17-03-17 18:04:00.848 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:04:00.858 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:04:00.858 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 18:04:00.858 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:04:00.858 -07 000000541 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:04:00.868 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:04:00.868 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:04:00.868 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:04:00.868 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:04:00.868 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:04:00.978 -07 000000482 INF: FPGA: Recv YMVTO 154377 871
17-03-17 18:04:00.988 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 111 ms to get response, and 118 ms overall
17-03-17 18:04:00.988 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 18:04:00.988 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 871 steps (0.544 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 18:04:00.988 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.548 mm, average velocity = 4.645 mm/sec
17-03-17 18:04:01.558 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:04:01.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=70, R2=79, Total=149. Warn if over 250 bubbles per interval.
17-03-17 18:04:02.908 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.000345,
17-03-17 18:04:03.988 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:04:03.988 -07 000000623 INF: FPGA: Recv YRDPOS 154380
17-03-17 18:04:03.998 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:04:03.998 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:04:04.008 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:04:04.008 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 18:04:04.008 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3155 ms
17-03-17 18:04:04.018 -07 000000610 INF: =================== Cycle #9, Flow Cell Temp 60° ===================
17-03-17 18:04:04.018 -07 000000610 INF: =================== Cycle #9, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:04:04.018 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 18:04:04.018 -07 000000561 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:04:04.028 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:04:04.028 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:04:04.028 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-17 18:04:04.038 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:04:04.038 -07 000000610 INF: =================== Cycle #9, Flow Cell Temp 60° ===================
17-03-17 18:04:04.038 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:04:04.038 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:04:04.038 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:04:04.068 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:04:04.068 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:04:04.068 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:04:04.368 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:04:04.388 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:04:04.388 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:04:04.438 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:04:04.458 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:04:04.458 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:04:04.558 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:04:04.558 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:04:04.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:04.648 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:04:04.648 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:04:04.648 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:04:04.778 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:04:04.818 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:06.558 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:04:06.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=71, R2=79, Total=150. Warn if over 250 bubbles per interval.
17-03-17 18:04:07.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:07.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:08.268 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.008536,
17-03-17 18:04:08.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:08.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:08.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:08.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:08.878 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:04:08.878 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:04:09.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:09.038 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:04:09.038 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:04:09.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:09.198 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:04:09.198 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:04:09.198 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:04:09.328 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:04:09.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:09.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:09.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:09.818 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:04:09.818 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:04:11.038 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:04:11.038 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:04:11.038 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:04:11.058 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:04:11.058 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:04:11.058 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:04:11.188 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:04:11.208 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:04:11.208 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:04:11.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:04:11.278 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:04:11.278 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:04:11.378 -07 000000610 INF: =================== Cycle #9, Pumping Reagent CMS (4) ===================
17-03-17 18:04:11.378 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:04:11.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:11.408 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:04:11.408 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:04:11.408 -07 000000610 INF: =================== Cycle #9, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:04:11.538 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:04:11.558 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 6
17-03-17 18:04:11.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=6, R2=6, Total=12. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=85, Total=162. Warn if over 250 bubbles per interval.
17-03-17 18:04:11.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:13.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:13.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:13.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:13.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:13.498 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:04:13.498 -07 000000610 INF: =================== Cycle #9, Pumping Reagent CMS (4) ===================
17-03-17 18:04:13.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:13.628 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.020806,
17-03-17 18:04:13.658 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:04:13.658 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:04:13.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:13.818 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:04:13.818 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:04:13.818 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:04:13.948 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:04:13.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:14.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:14.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:14.438 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:04:14.438 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:04:15.658 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:04:15.658 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:04:15.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:04:15.678 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:04:15.678 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:04:15.678 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:04:15.828 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:04:15.848 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:04:15.848 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:04:15.898 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:04:15.918 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:04:15.918 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:04:16.018 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:04:16.018 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:04:16.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:16.048 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:04:16.048 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:04:16.048 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:04:16.178 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:04:16.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:16.558 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:04:16.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:04:17.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:17.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:17.118 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:04:17.118 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:04:17.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:17.278 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:04:17.278 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:04:17.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:17.438 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:04:17.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:04:17.438 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:04:17.568 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:04:17.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:18.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:18.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:18.058 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:04:18.058 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:04:18.058 -07 000000593 INF: WaitCommand(10000) start
17-03-17 18:04:18.058 -07 000000458 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:04:18.058 -07 000000458 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:04:18.988 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.02213,
17-03-17 18:04:19.278 -07 000000458 INF: AsyncDelayTimer waited 1213ms
17-03-17 18:04:19.278 -07 000000458 INF: LanePump: Xmit /1?\r
17-03-17 18:04:20.258 -07 000000458 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:04:20.258 -07 000000458 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:04:20.388 -07 000000458 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:04:20.428 -07 000000458 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:21.558 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:04:21.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:04:21.958 -07 000000458 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:21.988 -07 000000458 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:22.408 -07 000000458 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:22.438 -07 000000458 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:22.438 -07 000000458 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:04:22.438 -07 000000458 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:04:22.438 -07 000000458 INF: ===================  ===================
17-03-17 18:04:24.968 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.007176,
17-03-17 18:04:26.558 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:04:26.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:04:28.068 -07 000000593 INF: WaitCommand(10000) end
17-03-17 18:04:28.068 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:04:28.068 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:04:28.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:28.098 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:04:28.098 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:04:28.098 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:04:28.228 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:04:28.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:30.328 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.018051,
17-03-17 18:04:31.558 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:04:31.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:04:34.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:34.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:34.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:34.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:35.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:35.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:35.688 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.99219,
17-03-17 18:04:35.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:36.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:36.558 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:04:36.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:04:36.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:36.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:36.698 -07 000000610 INF: LanePump: Waited 8429 ms for pump motion to complete
17-03-17 18:04:36.698 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:04:36.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:36.858 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:04:36.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:04:36.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:37.018 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:04:37.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:04:37.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:04:37.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:04:37.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:37.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:37.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:37.638 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:04:37.638 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:04:38.858 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:04:38.858 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:04:38.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:04:38.878 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:04:38.878 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:04:38.878 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:04:39.088 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:04:39.108 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:04:39.108 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:04:39.158 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:04:39.178 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:04:39.178 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:04:39.278 -07 000000610 INF: =================== Cycle #9, Pumping Reagent IMT (1) ===================
17-03-17 18:04:39.278 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:04:39.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:39.308 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:04:39.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:04:39.308 -07 000000610 INF: =================== Cycle #9, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:04:39.438 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:04:39.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:40.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:40.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:41.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:41.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:41.398 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 18:04:41.398 -07 000000610 INF: =================== Cycle #9, Pumping Reagent IMT (1) ===================
17-03-17 18:04:41.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:41.558 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:04:41.558 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:04:41.558 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:04:41.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:04:41.578 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.974486,
17-03-17 18:04:41.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:41.718 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:04:41.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:04:41.718 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:04:41.848 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:04:41.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:42.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:42.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:42.338 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:04:42.338 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:04:43.558 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:04:43.558 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:04:43.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:04:43.578 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:04:43.578 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:04:43.578 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:04:43.808 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:04:43.828 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:04:43.828 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:04:43.878 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:04:43.898 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:04:43.898 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:04:43.998 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:04:43.998 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:04:43.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:44.028 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:04:44.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:04:44.028 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:04:44.158 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:04:44.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:04:45.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:45.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:45.098 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:04:45.098 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:04:45.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:45.258 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:04:45.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:04:45.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:04:45.418 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:04:45.418 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:04:45.418 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:04:45.548 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:04:45.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:46.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:04:46.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:04:46.038 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:04:46.038 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:04:46.038 -07 000000610 INF: =================== Cycle #9, Flow Cell Temp 65° ===================
17-03-17 18:04:46.038 -07 000000610 INF: =================== Cycle #9, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:04:46.038 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:04:46.038 -07 000000459 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:04:46.048 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:04:46.048 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:04:46.048 -07 000000576 INF: FPGA: Recv TEC2EN 
17-03-17 18:04:46.058 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:04:46.058 -07 000000610 INF: =================== Cycle #9, Flow Cell Temp 65° ===================
17-03-17 18:04:46.058 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:04:46.058 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:04:46.558 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:04:46.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:04:46.948 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.956714,
17-03-17 18:04:51.558 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:04:51.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:04:52.318 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.001704,
17-03-17 18:04:56.558 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:04:56.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:04:57.678 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.014009,
17-03-17 18:05:01.558 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:05:01.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:05:03.038 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.985358,
17-03-17 18:05:06.558 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:05:06.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:05:08.398 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.014009,
17-03-17 18:05:11.558 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:05:11.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:05:13.758 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.027603,
17-03-17 18:05:16.068 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:05:16.068 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:05:16.068 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:05:16.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:05:16.198 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:05:16.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:05:16.198 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:05:16.328 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:05:16.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:05:16.558 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:05:16.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:05:16.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:05:16.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:05:16.938 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 18:05:16.938 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:05:17.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:05:17.098 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:05:17.098 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:05:17.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:05:17.258 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:05:17.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:05:17.258 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:05:17.388 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:05:17.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:05:17.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:05:17.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:05:17.878 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:05:17.878 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:05:17.878 -07 000000409 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:05:17.878 -07 000000462 INF: WaitCommand(30000) start
17-03-17 18:05:17.878 -07 000000409 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:05:19.098 -07 000000409 INF: AsyncDelayTimer waited 1215ms
17-03-17 18:05:19.098 -07 000000409 INF: LanePump: Xmit /1?\r
17-03-17 18:05:19.118 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.020806,
17-03-17 18:05:19.128 -07 000000409 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:05:19.128 -07 000000409 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:05:19.258 -07 000000409 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:05:19.848 -07 000000409 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:05:21.558 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:05:21.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:05:22.188 -07 000000409 INF: LanePump: Xmit /1Q\r
17-03-17 18:05:22.218 -07 000000409 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:05:22.218 -07 000000409 INF: LanePump: Waited 2368 ms for pump motion to complete
17-03-17 18:05:22.218 -07 000000409 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:05:22.218 -07 000000409 INF: ===================  ===================
17-03-17 18:05:24.478 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.983999,
17-03-17 18:05:26.558 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:05:26.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:05:29.838 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.993549,
17-03-17 18:05:31.558 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:05:31.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:05:35.198 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.005817,
17-03-17 18:05:36.558 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:05:36.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:05:40.558 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.977204,
17-03-17 18:05:41.558 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:05:41.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:05:45.918 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.020806,
17-03-17 18:05:46.558 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:05:46.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=77, R2=86, Total=163. Warn if over 250 bubbles per interval.
17-03-17 18:05:47.888 -07 000000462 INF: WaitCommand(30000) end
17-03-17 18:05:47.888 -07 000000610 INF: =================== Cycle #9, Flow Cell Temp 22° ===================
17-03-17 18:05:47.888 -07 000000610 INF: =================== Cycle #9, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:05:47.888 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:05:47.888 -07 000000476 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:05:47.898 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:05:47.898 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:05:47.898 -07 000000476 INF: FPGA: Recv TEC2EN 
17-03-17 18:05:47.908 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:05:47.908 -07 000000610 INF: =================== Cycle #9, Flow Cell Temp 22° ===================
17-03-17 18:05:47.908 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:05:47.908 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:05:47.908 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:05:47.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:05:47.948 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:05:47.948 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:05:47.948 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:05:48.078 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:05:48.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:05:51.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:05:51.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:05:51.278 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.016692,
17-03-17 18:05:51.558 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 3
17-03-17 18:05:51.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=3, R2=0, Total=3. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=86, Total=166. Warn if over 250 bubbles per interval.
17-03-17 18:05:51.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:05:51.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:05:52.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:05:52.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:05:52.178 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:05:52.178 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:05:52.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:05:52.338 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:05:52.338 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:05:52.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:05:52.498 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:05:52.498 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:05:52.498 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:05:52.628 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:05:52.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:05:53.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:05:53.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:05:53.118 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:05:53.118 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:05:54.338 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:05:54.338 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:05:54.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:05:54.358 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:05:54.358 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:05:54.358 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:05:54.508 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:05:54.528 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:05:54.528 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:05:54.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:05:54.598 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:05:54.598 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:05:54.698 -07 000000610 INF: =================== Cycle #9, Pumping Reagent USM (2) ===================
17-03-17 18:05:54.698 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:05:54.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:05:54.728 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:05:54.728 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:05:54.728 -07 000000610 INF: =================== Cycle #9, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:05:54.858 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:05:54.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:05:56.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:05:56.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:05:56.558 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 0
17-03-17 18:05:56.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=3, Total=3. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:05:56.638 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.001704,
17-03-17 18:05:56.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:05:56.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:05:56.818 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:05:56.818 -07 000000610 INF: =================== Cycle #9, Pumping Reagent USM (2) ===================
17-03-17 18:05:56.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:05:56.978 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:05:56.978 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:05:57.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:05:57.138 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:05:57.138 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:05:57.138 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:05:57.268 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:05:57.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:05:57.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:05:57.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:05:57.758 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:05:57.758 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:05:58.978 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 18:05:58.978 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:05:58.978 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:05:58.998 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:05:58.998 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:05:58.998 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:05:59.148 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:05:59.168 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:05:59.168 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:05:59.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:05:59.238 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:05:59.238 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:05:59.338 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:05:59.338 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:05:59.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:05:59.368 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:05:59.368 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:05:59.368 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:05:59.498 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:05:59.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:06:00.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:06:00.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:06:00.438 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:06:00.438 -07 000000610 INF: =================== Cycle #9, Pumping Reagent PR2 (3) ===================
17-03-17 18:06:00.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:06:00.598 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:06:00.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:06:00.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:06:00.758 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:06:00.758 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:06:00.758 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:06:00.888 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:06:00.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:06:01.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:06:01.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:06:01.378 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:06:01.378 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:06:01.378 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:06:01.378 -07 000000476 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:06:01.378 -07 000000480 INF: WaitCommand(10000) start
17-03-17 18:06:01.558 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:01.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:01.998 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.990831,
17-03-17 18:06:02.598 -07 000000476 INF: AsyncDelayTimer waited 1214ms
17-03-17 18:06:02.598 -07 000000476 INF: LanePump: Xmit /1?\r
17-03-17 18:06:02.628 -07 000000476 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:06:02.628 -07 000000476 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:06:02.758 -07 000000476 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:06:02.798 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:06:04.328 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 18:06:04.358 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:06:04.778 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 18:06:05.258 -07 000000476 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:06:05.258 -07 000000476 INF: LanePump: Waited 2459 ms for pump motion to complete
17-03-17 18:06:05.258 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:06:05.258 -07 000000476 INF: ===================  ===================
17-03-17 18:06:06.558 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:06.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:07.358 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.978563,
17-03-17 18:06:11.388 -07 000000480 INF: WaitCommand(10000) end
17-03-17 18:06:11.388 -07 000000610 INF: =================== Cycle #9, Imaging ===================
17-03-17 18:06:11.398 -07 000000610 INF: Imaging Cycle 9: ScanTilesCommand Cycle 9 time start.
17-03-17 18:06:11.398 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:06:11.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:06:11.418 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:06:11.418 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:06:11.418 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:06:11.558 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:11.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:11.718 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:06:11.738 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:06:11.738 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:06:11.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:06:11.808 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:06:11.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:11.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:11.808 -07 000000480 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:06:11.808 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:11.808 -07 000000480 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:06:11.818 -07 000000409 INF: FPGA: Recv EXLED1ON 
17-03-17 18:06:11.818 -07 000000480 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:06:11.818 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:06:11.818 -07 000000459 INF: FPGA: Recv EXLED1ADCR 23165
17-03-17 18:06:11.828 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:06:11.828 -07 000000480 INF: RedLED: Using Red data: Photodiode ADC 23165 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-17 18:06:11.828 -07 000000480 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:06:11.828 -07 000000623 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:06:11.838 -07 000000480 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:11.838 -07 000000480 INF: RedLED: LED was on for 17 ms
17-03-17 18:06:11.848 -07 000000480 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 31 ms.
17-03-17 18:06:11.848 -07 000000480 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:06:11.848 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:11.848 -07 000000480 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:06:11.848 -07 000000409 INF: FPGA: Recv EXLED2ON 
17-03-17 18:06:11.858 -07 000000480 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:06:11.858 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:06:11.858 -07 000000409 INF: FPGA: Recv EXLED1ADCR 2104
17-03-17 18:06:11.868 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:11.868 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 2104 --> 0.9 mW (old method), or 182.8 mW (new method). Difference = 181.9 mW
17-03-17 18:06:11.868 -07 000000480 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:06:11.868 -07 000000459 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:06:11.878 -07 000000480 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:11.878 -07 000000480 INF: GreenLED: LED was on for 19 ms
17-03-17 18:06:11.878 -07 000000480 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 37 ms.
17-03-17 18:06:11.888 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:06:11.888 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-17 18:06:11.898 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:06:11.898 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:06:12.398 -07 000000480 INF: FPGA: Recv EMOUT
17-03-17 18:06:12.398 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 498 ms to get response, and 508 ms overall
17-03-17 18:06:12.408 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:06:12.408 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 18:06:12.418 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:06:12.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:06:12.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.12708804739641. ------
17-03-17 18:06:12.418 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17901 mm
17-03-17 18:06:12.418 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:06:12.418 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:12.418 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:06:12.418 -07 000000458 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 18:06:12.418 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 39105, sync = True, waitForSettling = False)
17-03-17 18:06:12.418 -07 000000476 INF: Z Motor: Moving to -0.179011 mm, started at -0.127088 mm, distance = -51.92 um
17-03-17 18:06:12.418 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:12.428 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:06:12.428 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:12.428 -07 000000623 INF: FPGA: Recv YRDPOS 154381
17-03-17 18:06:12.438 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:06:12.438 -07 000000458 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:12.438 -07 000000476 INF: FPGA: Xmit ZDACW 39105\n [Z Motor]
17-03-17 18:06:12.438 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 18:06:12.438 -07 000000458 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:06:12.438 -07 000000458 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:06:12.448 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:06:12.448 -07 000000476 INF: FPGA: 'ZDACW 39105' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:06:12.458 -07 000000458 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:06:12.468 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:12.468 -07 000000623 INF: FPGA: Recv ZDACR 39105
17-03-17 18:06:12.478 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:06:12.478 -07 000000476 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:06:12.648 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:06:12.648 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:06:12.718 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.969015,
17-03-17 18:06:14.138 -07 000000409 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 18:06:14.138 -07 000000458 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1702 ms overall
17-03-17 18:06:14.138 -07 000000458 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:06:14.138 -07 000000458 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24750 steps, but required 24776 steps (15.485 mm). Slippage = 0.016 mm (0.00%).
17-03-17 18:06:14.138 -07 000000458 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1702 ms, distance = 15.468 mm, average velocity = 9.088 mm/sec
17-03-17 18:06:16.558 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:16.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:16.988 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:16.988 -07 000000476 INF: FPGA: Recv YRDPOS 122697
17-03-17 18:06:16.998 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:16.998 -07 000000458 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:17.018 -07 000000458 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:06:17.018 -07 000000458 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 18:06:17.018 -07 000000458 INF: Y Motor: Moved to 59.9106 after 4594 ms
17-03-17 18:06:17.018 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179011 mm (DAC = 39105)
17-03-17 18:06:17.018 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:17.018 -07 000000476 INF: FPGA: Recv ZSGSRD 37154
17-03-17 18:06:17.028 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:06:17.028 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:17.028 -07 000000476 INF: FPGA: Recv ZSGSRD 37154
17-03-17 18:06:17.038 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.038 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:17.038 -07 000000409 INF: FPGA: Recv ZSGSRD 37160
17-03-17 18:06:17.048 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.048 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:17.048 -07 000000409 INF: FPGA: Recv ZSGSRD 37159
17-03-17 18:06:17.058 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.058 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:17.058 -07 000000458 INF: FPGA: Recv ZSGSRD 37156
17-03-17 18:06:17.068 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.068 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:17.068 -07 000000409 INF: FPGA: Recv ZSGSRD 37154
17-03-17 18:06:17.078 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.078 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:17.078 -07 000000409 INF: FPGA: Recv ZSGSRD 37157
17-03-17 18:06:17.088 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.088 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:17.088 -07 000000476 INF: FPGA: Recv ZSGSRD 37155
17-03-17 18:06:17.098 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.098 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:17.098 -07 000000458 INF: FPGA: Recv ZSGSRD 37152
17-03-17 18:06:17.108 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.108 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:17.108 -07 000000409 INF: FPGA: Recv ZSGSRD 37151
17-03-17 18:06:17.118 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.118 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:17.118 -07 000000409 INF: FPGA: Recv ZPIEZORD 33513
17-03-17 18:06:17.128 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.128 -07 000000462 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.967 V. Piezo Error = -8.1 V.
17-03-17 18:06:17.128 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37155 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37154 (-178.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37151 (-178.1 uncal um), Max = 37160 (-178.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:06:17.128 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37155, posNoise = 5, negNoise = 4
17-03-17 18:06:17.128 -07 000000462 INF: Z Motor: After move to -0.179011, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:17.128 -07 000000462 INF: Z Motor: Settle wait time = 4597 ms, measure time = 104 ms (allowed 150 ms), total time = 4701 ms
17-03-17 18:06:17.128 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:06:17.178 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4753 ms
17-03-17 18:06:17.178 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:06:17.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:17.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:17.178 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:17.178 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:17.178 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:06:17.178 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:17.188 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:06:17.188 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:06:17.208 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-17 18:06:17.208 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:06:17.208 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:06:17.208 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:06:17.208 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:06:17.208 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 18:06:17.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:06:17.268 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:06:17.458 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:06:17.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:06:17.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:06:17.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 18:06:17.498 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:06:17.508 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 18:06:17.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:06:17.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 18:06:17.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:17.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:06:17.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:06:17.608 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:17.608 -07 000000462 INF: Image SNR check: start
17-03-17 18:06:17.608 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:17.618 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:17.618 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:06:17.628 -07 000000462 INF: Image SNR check: pass  [peak (Max-Min)=82.50]
17-03-17 18:06:17.628 -07 000000462 INF: Autofocus start
17-03-17 18:06:17.628 -07 000000462 INF: MeasureProfile start
17-03-17 18:06:17.638 -07 000000462 INF: MeasureProfile done
17-03-17 18:06:17.638 -07 000000462 INF: X=64  Z correction [um]=0.2557664
17-03-17 18:06:17.638 -07 000000462 INF: Autofocus finished
17-03-17 18:06:17.818 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:06:17.818 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:06:17.818 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179014954138263. ----------
17-03-17 18:06:17.818 -07 000000610 INF: Cycle	9	Tile	1	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:06:17.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37673, sync = True, waitForSettling = True)
17-03-17 18:06:17.828 -07 000000610 INF: Z Motor: Moving to -0.172456 mm, started at -0.179015 mm, distance = 6.56 um
17-03-17 18:06:17.828 -07 000000610 INF: FPGA: Xmit ZDACW 37673\n [Z Motor]
17-03-17 18:06:17.828 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:06:17.838 -07 000000610 INF: FPGA: 'ZDACW 37673' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:17.838 -07 000000409 INF: FPGA: Recv ZDACR 37673
17-03-17 18:06:17.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:17.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:06:17.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:17.998 -07 000000462 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:06:18.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:18.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:18.008 -07 000000458 INF: FPGA: Recv ZSGSRD 36128
17-03-17 18:06:18.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:18.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:18.018 -07 000000409 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:06:18.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:18.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:18.028 -07 000000409 INF: FPGA: Recv ZSGSRD 36133
17-03-17 18:06:18.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:18.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:18.038 -07 000000409 INF: FPGA: Recv ZSGSRD 36136
17-03-17 18:06:18.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:06:18.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:18.048 -07 000000480 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:06:18.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:18.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:18.058 -07 000000462 INF: FPGA: Recv ZSGSRD 36135
17-03-17 18:06:18.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:18.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:18.078 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.970374,
17-03-17 18:06:18.078 -07 000000480 INF: FPGA: Recv ZSGSRD 36134
17-03-17 18:06:18.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:06:18.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:18.088 -07 000000458 INF: FPGA: Recv ZSGSRD 36138
17-03-17 18:06:18.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:18.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:18.118 -07 000000462 INF: FPGA: Recv ZSGSRD 36139
17-03-17 18:06:18.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:06:18.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:18.138 -07 000000476 INF: FPGA: Recv ZPIEZORD 32146
17-03-17 18:06:18.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:06:18.148 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.8 V.
17-03-17 18:06:18.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36135 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36135 (-171.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36128 (-171.5 uncal um), Max = 36139 (-171.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:06:18.148 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36135, posNoise = 4, negNoise = 7
17-03-17 18:06:18.148 -07 000000610 INF: Z Motor: After move to -0.172456, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:18.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms)
17-03-17 18:06:18.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:18.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:18.148 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:18.148 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:18.148 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:06:18.148 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:06:18.148 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:06:18.148 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:18.148 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:06:18.148 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:06:18.148 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:18.148 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:06:18.148 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:06:18.148 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:06:18.158 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:06:18.158 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:06:18.168 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 18:06:18.168 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:06:18.178 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:06:18.178 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:06:18.178 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:06:18.178 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-17 18:06:18.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37850 150\n [Camera]
17-03-17 18:06:18.388 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:06:18.778 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:06:18.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:06:18.778 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:18.778 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:18.778 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:06:18.778 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:06:18.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:06:18.778 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:18.778 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:18.778 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 18:06:18.968 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37850 776
17-03-17 18:06:19.118 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:06:19.178 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:06:19.178 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:06:19.178 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:19.188 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:06:19.188 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:06:19.188 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:06:19.188 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:06:19.188 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:19.188 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:06:19.198 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 18:06:19.308 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:06:19.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:06:19.308 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:19.438 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:06:19.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:06:19.438 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:19.438 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:19.438 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:06:19.448 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:19.448 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:06:19.498 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:06:19.498 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:06:19.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37850 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-17 18:06:19.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:06:19.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172462257753667. ------
17-03-17 18:06:19.508 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17879 mm
17-03-17 18:06:19.508 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:06:19.508 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:19.508 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:06:19.508 -07 000000476 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 18:06:19.508 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:19.508 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 39056, sync = True, waitForSettling = False)
17-03-17 18:06:19.508 -07 000000480 INF: Z Motor: Moving to -0.178787 mm, started at -0.172462 mm, distance = -6.32 um
17-03-17 18:06:19.518 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:06:19.518 -07 000000480 INF: FPGA: Xmit ZDACW 39056\n [Z Motor]
17-03-17 18:06:19.518 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:06:19.528 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:19.528 -07 000000480 INF: FPGA: 'ZDACW 39056' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:06:19.528 -07 000000478 INF: FPGA: Recv YRDPOS 122697
17-03-17 18:06:19.538 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:06:19.538 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:06:19.538 -07 000000476 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:19.538 -07 000000476 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:06:19.538 -07 000000476 INF: Y Motor: Moving 1331 steps2
17-03-17 18:06:19.548 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:19.548 -07 000000576 INF: FPGA: Recv ZDACR 39056
17-03-17 18:06:19.558 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:06:19.558 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:06:19.558 -07 000000480 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:06:19.738 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:06:19.738 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:06:19.828 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:06:19.828 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:06:19.828 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:19.828 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:06:19.828 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:06:19.828 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:19.838 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:19.838 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 18:06:19.838 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:19.838 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:06:19.928 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:06:19.928 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:06:19.958 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:19.958 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 18:06:19.968 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:06:19.968 -07 000000476 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:19.968 -07 000000476 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 18:06:19.968 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.832 mm, average velocity = 2.106 mm/sec
17-03-17 18:06:20.918 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:20.918 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 18:06:20.928 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:20.928 -07 000000476 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:20.948 -07 000000476 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:06:20.948 -07 000000476 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:06:20.948 -07 000000476 INF: Y Motor: Moved to 60.7329 after 1437 ms (table move)
17-03-17 18:06:20.948 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178787 mm (DAC = 39056)
17-03-17 18:06:20.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:20.948 -07 000000480 INF: FPGA: Recv ZSGSRD 37121
17-03-17 18:06:20.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:06:20.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:20.958 -07 000000576 INF: FPGA: Recv ZSGSRD 37116
17-03-17 18:06:20.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:20.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:20.968 -07 000000623 INF: FPGA: Recv ZSGSRD 37113
17-03-17 18:06:20.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:20.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:20.978 -07 000000459 INF: FPGA: Recv ZSGSRD 37118
17-03-17 18:06:20.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:20.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:20.988 -07 000000480 INF: FPGA: Recv ZSGSRD 37117
17-03-17 18:06:20.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:20.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:20.998 -07 000000478 INF: FPGA: Recv ZSGSRD 37123
17-03-17 18:06:21.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.008 -07 000000478 INF: FPGA: Recv ZSGSRD 37118
17-03-17 18:06:21.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.018 -07 000000478 INF: FPGA: Recv ZSGSRD 37120
17-03-17 18:06:21.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.028 -07 000000458 INF: FPGA: Recv ZSGSRD 37121
17-03-17 18:06:21.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.038 -07 000000458 INF: FPGA: Recv ZSGSRD 37118
17-03-17 18:06:21.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.048 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:21.048 -07 000000458 INF: FPGA: Recv ZPIEZORD 33457
17-03-17 18:06:21.058 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.058 -07 000000431 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.960 V. Piezo Error = -8.1 V.
17-03-17 18:06:21.058 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37118 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37118 (-177.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37113 (-177.8 uncal um), Max = 37123 (-177.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:06:21.058 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37118, posNoise = 5, negNoise = 5
17-03-17 18:06:21.058 -07 000000431 INF: Z Motor: After move to -0.178787, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:21.058 -07 000000431 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:06:21.058 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:06:21.108 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:06:21.108 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:06:21.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:21.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:21.108 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:21.108 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:06:21.108 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:21.108 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:21.108 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:21.108 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:06:21.118 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:06:21.118 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:06:21.118 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:06:21.118 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:06:21.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:06:21.168 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:06:21.368 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:06:21.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:06:21.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:06:21.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start.
17-03-17 18:06:21.408 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:06:21.408 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:06:21.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:06:21.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:06:21.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:21.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:06:21.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:06:21.508 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:21.508 -07 000000431 INF: Autofocus start
17-03-17 18:06:21.508 -07 000000431 INF: MeasureProfile start
17-03-17 18:06:21.508 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:21.518 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:21.518 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:06:21.528 -07 000000431 INF: MeasureProfile done
17-03-17 18:06:21.528 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:06:21.528 -07 000000431 INF: Autofocus finished
17-03-17 18:06:21.558 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:21.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:21.718 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:06:21.718 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:06:21.718 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.178777258289018. ----------
17-03-17 18:06:21.718 -07 000000610 INF: Cycle	9	Tile	2	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:06:21.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37571, sync = True, waitForSettling = True)
17-03-17 18:06:21.728 -07 000000610 INF: Z Motor: Moving to -0.171989 mm, started at -0.178777 mm, distance = 6.79 um
17-03-17 18:06:21.728 -07 000000610 INF: FPGA: Xmit ZDACW 37571\n [Z Motor]
17-03-17 18:06:21.728 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 18:06:21.738 -07 000000610 INF: FPGA: 'ZDACW 37571' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:06:21.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:21.738 -07 000000478 INF: FPGA: Recv ZDACR 37571
17-03-17 18:06:21.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:06:21.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.898 -07 000000478 INF: FPGA: Recv ZSGSRD 36062
17-03-17 18:06:21.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.908 -07 000000478 INF: FPGA: Recv ZSGSRD 36057
17-03-17 18:06:21.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.918 -07 000000431 INF: FPGA: Recv ZSGSRD 36059
17-03-17 18:06:21.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.928 -07 000000478 INF: FPGA: Recv ZSGSRD 36060
17-03-17 18:06:21.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.938 -07 000000547 INF: FPGA: Recv ZSGSRD 36067
17-03-17 18:06:21.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.948 -07 000000547 INF: FPGA: Recv ZSGSRD 36060
17-03-17 18:06:21.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.958 -07 000000458 INF: FPGA: Recv ZSGSRD 36059
17-03-17 18:06:21.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.968 -07 000000431 INF: FPGA: Recv ZSGSRD 36063
17-03-17 18:06:21.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.978 -07 000000431 INF: FPGA: Recv ZSGSRD 36066
17-03-17 18:06:21.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:21.988 -07 000000478 INF: FPGA: Recv ZSGSRD 36064
17-03-17 18:06:21.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:21.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:21.998 -07 000000429 INF: FPGA: Recv ZPIEZORD 32035
17-03-17 18:06:22.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:22.008 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.9 V.
17-03-17 18:06:22.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36062 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36061 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36057 (-171.1 uncal um), Max = 36067 (-171.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:06:22.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36062, posNoise = 5, negNoise = 5
17-03-17 18:06:22.008 -07 000000610 INF: Z Motor: After move to -0.171989, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:22.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:06:22.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:22.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:22.008 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:22.008 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:06:22.008 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:22.008 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:06:22.008 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:06:22.008 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:22.008 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:22.008 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:06:22.008 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:06:22.008 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:06:22.018 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:06:22.018 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:06:22.018 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:06:22.018 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:06:22.028 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:06:22.028 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:06:22.028 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:06:22.028 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:06:22.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37747 150\n [Camera]
17-03-17 18:06:22.228 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:06:22.618 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:06:22.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:06:22.618 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:22.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:06:22.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:06:22.628 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:22.748 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:22.748 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) start.
17-03-17 18:06:22.758 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:22.758 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:06:22.808 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37747 776
17-03-17 18:06:22.958 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:06:23.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) end. Duration was 371 ms.
17-03-17 18:06:23.118 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:06:23.118 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:23.128 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:06:23.128 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:06:23.128 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:23.128 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:23.128 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 18:06:23.128 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:06:23.138 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-17 18:06:23.148 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:06:23.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:06:23.148 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:23.158 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:06:23.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:06:23.158 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:23.168 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:23.168 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:06:23.168 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:23.168 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:06:23.338 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:06:23.338 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:06:23.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37747 150' command took 2 ms to send, 1309 ms to get response, and 1313 ms overall
17-03-17 18:06:23.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:06:23.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.171993290267319. ------
17-03-17 18:06:23.348 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:23.348 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17860 mm
17-03-17 18:06:23.348 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:06:23.348 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:23.358 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:06:23.358 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:06:23.358 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 39015, sync = True, waitForSettling = False)
17-03-17 18:06:23.358 -07 000000459 INF: Z Motor: Moving to -0.178599 mm, started at -0.171993 mm, distance = -6.61 um
17-03-17 18:06:23.358 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:06:23.358 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 18:06:23.368 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:23.368 -07 000000480 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:06:23.378 -07 000000459 INF: FPGA: Xmit ZDACW 39015\n [Z Motor]
17-03-17 18:06:23.378 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:06:23.378 -07 000000576 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:23.378 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:06:23.378 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:06:23.378 -07 000000576 INF: Y Motor: Moving 1343 steps-20
17-03-17 18:06:23.388 -07 000000459 INF: FPGA: 'ZDACW 39015' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:06:23.388 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:06:23.398 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:23.398 -07 000000480 INF: FPGA: Recv ZDACR 39015
17-03-17 18:06:23.408 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:06:23.408 -07 000000459 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:06:23.478 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.96762,
17-03-17 18:06:23.538 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:06:23.538 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:06:23.538 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:23.538 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:06:23.548 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:06:23.548 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:23.548 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:06:23.548 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:23.548 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:06:23.558 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:06:24.248 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:06:24.248 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:06:24.248 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 880 ms to get response, and 890 ms overall
17-03-17 18:06:24.248 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 850 ms to get response, and 865 ms overall
17-03-17 18:06:24.278 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:24.278 -07 000000501 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:06:24.288 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:24.288 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:24.288 -07 000000576 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:06:24.288 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 866 ms, distance = 0.840 mm, average velocity = 0.970 mm/sec
17-03-17 18:06:25.238 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:25.238 -07 000000476 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:06:25.248 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:25.248 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:25.268 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:06:25.268 -07 000000576 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:06:25.268 -07 000000576 INF: Y Motor: Moved to 61.5640 after 1918 ms (table move)
17-03-17 18:06:25.278 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178599 mm (DAC = 39015)
17-03-17 18:06:25.278 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:25.278 -07 000000501 INF: FPGA: Recv ZSGSRD 37093
17-03-17 18:06:25.288 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:06:25.288 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:25.288 -07 000000576 INF: FPGA: Recv ZSGSRD 37093
17-03-17 18:06:25.298 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:25.298 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:25.298 -07 000000501 INF: FPGA: Recv ZSGSRD 37087
17-03-17 18:06:25.308 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:25.308 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:25.308 -07 000000431 INF: FPGA: Recv ZSGSRD 37090
17-03-17 18:06:25.318 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:25.318 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:25.318 -07 000000431 INF: FPGA: Recv ZSGSRD 37095
17-03-17 18:06:25.328 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:25.328 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:25.328 -07 000000501 INF: FPGA: Recv ZSGSRD 37089
17-03-17 18:06:25.338 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:25.338 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:25.338 -07 000000576 INF: FPGA: Recv ZSGSRD 37091
17-03-17 18:06:25.348 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:25.348 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:25.348 -07 000000576 INF: FPGA: Recv ZSGSRD 37086
17-03-17 18:06:25.358 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:25.358 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:25.358 -07 000000476 INF: FPGA: Recv ZSGSRD 37086
17-03-17 18:06:25.368 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:25.368 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:25.368 -07 000000476 INF: FPGA: Recv ZSGSRD 37094
17-03-17 18:06:25.378 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:25.378 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:25.378 -07 000000476 INF: FPGA: Recv ZPIEZORD 33402
17-03-17 18:06:25.388 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:25.388 -07 000000409 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.953 V. Piezo Error = -8.2 V.
17-03-17 18:06:25.388 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37090 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37090 (-177.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37086 (-177.7 uncal um), Max = 37095 (-177.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:06:25.388 -07 000000409 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37090, posNoise = 5, negNoise = 4
17-03-17 18:06:25.388 -07 000000409 INF: Z Motor: After move to -0.178599, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:25.388 -07 000000409 INF: Z Motor: Settle wait time = 1923 ms, measure time = 106 ms (allowed 150 ms), total time = 2029 ms
17-03-17 18:06:25.388 -07 000000409 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:06:25.438 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2085 ms
17-03-17 18:06:25.438 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:06:25.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:25.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:25.438 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:25.438 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:25.438 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:06:25.438 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:25.438 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:25.438 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:06:25.448 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:06:25.448 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:06:25.458 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:06:25.458 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:06:25.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:06:25.498 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:06:25.698 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:06:25.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:06:25.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:06:25.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-17 18:06:25.738 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:06:25.738 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 18:06:25.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:06:25.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:06:25.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:25.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:06:25.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 18:06:25.938 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:25.938 -07 000000576 INF: Autofocus start
17-03-17 18:06:25.938 -07 000000576 INF: MeasureProfile start
17-03-17 18:06:25.938 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:25.948 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:25.948 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:06:25.948 -07 000000576 INF: MeasureProfile done
17-03-17 18:06:25.948 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:06:25.948 -07 000000576 INF: Autofocus finished
17-03-17 18:06:26.148 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:06:26.148 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 18:06:26.148 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178597380349049. ----------
17-03-17 18:06:26.148 -07 000000610 INF: Cycle	9	Tile	3	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:06:26.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37512, sync = True, waitForSettling = True)
17-03-17 18:06:26.158 -07 000000610 INF: Z Motor: Moving to -0.171719 mm, started at -0.178597 mm, distance = 6.88 um
17-03-17 18:06:26.158 -07 000000610 INF: FPGA: Xmit ZDACW 37512\n [Z Motor]
17-03-17 18:06:26.158 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 18:06:26.168 -07 000000610 INF: FPGA: 'ZDACW 37512' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:26.168 -07 000000409 INF: FPGA: Recv ZDACR 37512
17-03-17 18:06:26.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:06:26.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:26.328 -07 000000409 INF: FPGA: Recv ZSGSRD 36023
17-03-17 18:06:26.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:26.338 -07 000000576 INF: FPGA: Recv ZSGSRD 36019
17-03-17 18:06:26.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:26.348 -07 000000409 INF: FPGA: Recv ZSGSRD 36022
17-03-17 18:06:26.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:26.358 -07 000000409 INF: FPGA: Recv ZSGSRD 36018
17-03-17 18:06:26.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:26.368 -07 000000576 INF: FPGA: Recv ZSGSRD 36019
17-03-17 18:06:26.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:26.378 -07 000000501 INF: FPGA: Recv ZSGSRD 36022
17-03-17 18:06:26.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:26.388 -07 000000409 INF: FPGA: Recv ZSGSRD 36014
17-03-17 18:06:26.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:26.398 -07 000000476 INF: FPGA: Recv ZSGSRD 36022
17-03-17 18:06:26.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:26.408 -07 000000501 INF: FPGA: Recv ZSGSRD 36020
17-03-17 18:06:26.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:26.418 -07 000000409 INF: FPGA: Recv ZSGSRD 36021
17-03-17 18:06:26.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:26.428 -07 000000501 INF: FPGA: Recv ZPIEZORD 31952
17-03-17 18:06:26.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:26.438 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -9.0 V.
17-03-17 18:06:26.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36020 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36020 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36014 (-170.8 uncal um), Max = 36023 (-170.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:06:26.438 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36020, posNoise = 3, negNoise = 6
17-03-17 18:06:26.438 -07 000000610 INF: Z Motor: After move to -0.171719, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:26.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 18:06:26.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:26.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:26.438 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:26.438 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:06:26.438 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:06:26.438 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:06:26.438 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:26.438 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:26.448 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:06:26.448 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:06:26.448 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:26.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:06:26.448 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:06:26.448 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:06:26.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:06:26.448 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:06:26.458 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:06:26.458 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:06:26.458 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:06:26.458 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:06:26.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37689 150\n [Camera]
17-03-17 18:06:26.558 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:26.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:26.668 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:06:27.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:06:27.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:06:27.058 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:27.058 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:06:27.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:06:27.068 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:27.068 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:27.068 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:06:27.068 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:27.068 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:06:27.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37689 776
17-03-17 18:06:27.398 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:06:27.448 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:06:27.448 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:06:27.448 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:27.448 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:06:27.448 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:06:27.448 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:27.448 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:27.448 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:06:27.448 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:27.458 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:06:27.588 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:06:27.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:06:27.588 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:27.588 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:06:27.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:06:27.598 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:27.598 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:27.598 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:06:27.598 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:27.598 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 18:06:27.778 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:06:27.778 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:06:27.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37689 150' command took 2 ms to send, 1308 ms to get response, and 1316 ms overall
17-03-17 18:06:27.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:06:27.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171723473357365. ------
17-03-17 18:06:27.788 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:27.788 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17790 mm
17-03-17 18:06:27.788 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:06:27.788 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:06:27.788 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 18:06:27.788 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38862, sync = True, waitForSettling = False)
17-03-17 18:06:27.788 -07 000000576 INF: Z Motor: Moving to -0.177899 mm, started at -0.171723 mm, distance = -6.18 um
17-03-17 18:06:27.788 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:27.798 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:06:27.798 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:27.798 -07 000000547 INF: FPGA: Recv YRDPOS 126083
17-03-17 18:06:27.808 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:06:27.808 -07 000000480 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:27.808 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:06:27.808 -07 000000480 INF: Y Motor: Moving 1342 steps-18
17-03-17 18:06:27.808 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:06:27.818 -07 000000576 INF: FPGA: Xmit ZDACW 38862\n [Z Motor]
17-03-17 18:06:27.818 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:06:27.828 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:06:27.828 -07 000000576 INF: FPGA: 'ZDACW 38862' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:06:27.838 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:27.838 -07 000000459 INF: FPGA: Recv ZDACR 38862
17-03-17 18:06:27.848 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:06:27.848 -07 000000576 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:06:27.988 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:06:27.988 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:06:27.988 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:27.988 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:06:27.998 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:06:27.998 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:06:27.998 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:27.998 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:06:27.998 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:06:27.998 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:06:28.008 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:06:28.008 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 216 ms overall
17-03-17 18:06:28.198 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:06:28.198 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:06:28.238 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:28.238 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:06:28.248 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:28.248 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:28.248 -07 000000480 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:06:28.248 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-17 18:06:28.838 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.003063,
17-03-17 18:06:29.198 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:29.198 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:06:29.208 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:29.208 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:29.228 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:06:29.228 -07 000000480 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:06:29.228 -07 000000480 INF: Y Motor: Moved to 62.3955 after 1432 ms (table move)
17-03-17 18:06:29.228 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177899 mm (DAC = 38862)
17-03-17 18:06:29.228 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:29.228 -07 000000576 INF: FPGA: Recv ZSGSRD 36984
17-03-17 18:06:29.238 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:29.238 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:29.238 -07 000000480 INF: FPGA: Recv ZSGSRD 36984
17-03-17 18:06:29.248 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:29.248 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:29.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36978
17-03-17 18:06:29.258 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:29.258 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:29.258 -07 000000576 INF: FPGA: Recv ZSGSRD 36987
17-03-17 18:06:29.268 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:29.268 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:29.268 -07 000000576 INF: FPGA: Recv ZSGSRD 36988
17-03-17 18:06:29.278 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:29.278 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:29.278 -07 000000576 INF: FPGA: Recv ZSGSRD 36986
17-03-17 18:06:29.288 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:29.288 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:29.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36987
17-03-17 18:06:29.298 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:29.298 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:29.298 -07 000000480 INF: FPGA: Recv ZSGSRD 36979
17-03-17 18:06:29.308 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:29.308 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:29.308 -07 000000576 INF: FPGA: Recv ZSGSRD 36983
17-03-17 18:06:29.318 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:29.318 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:29.318 -07 000000480 INF: FPGA: Recv ZSGSRD 36985
17-03-17 18:06:29.328 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:29.328 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:29.328 -07 000000480 INF: FPGA: Recv ZPIEZORD 33203
17-03-17 18:06:29.338 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:29.338 -07 000000409 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.930 V. Piezo Error = -8.4 V.
17-03-17 18:06:29.338 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36984 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36984 (-177.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36978 (-177.0 uncal um), Max = 36988 (-177.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:06:29.338 -07 000000409 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36984, posNoise = 4, negNoise = 6
17-03-17 18:06:29.338 -07 000000409 INF: Z Motor: After move to -0.177899, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:29.338 -07 000000409 INF: Z Motor: Settle wait time = 1434 ms, measure time = 107 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:06:29.338 -07 000000409 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:06:29.388 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:06:29.388 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:06:29.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:29.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:29.388 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:29.388 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:29.388 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:06:29.388 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:29.388 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:29.388 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:06:29.398 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:06:29.398 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:06:29.408 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:06:29.408 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:06:29.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:06:29.458 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:06:29.648 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:06:29.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:06:29.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:06:29.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) start.
17-03-17 18:06:29.688 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:06:29.688 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 18:06:29.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:06:29.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:06:29.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:29.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:06:29.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:06:29.798 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:29.798 -07 000000458 INF: Autofocus start
17-03-17 18:06:29.798 -07 000000458 INF: MeasureProfile start
17-03-17 18:06:29.798 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:29.808 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:29.808 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:06:29.808 -07 000000458 INF: MeasureProfile done
17-03-17 18:06:29.808 -07 000000458 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:06:29.808 -07 000000458 INF: Autofocus finished
17-03-17 18:06:30.008 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:06:30.008 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 18:06:30.008 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177916413862022. ----------
17-03-17 18:06:30.008 -07 000000610 INF: Cycle	9	Tile	4	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:06:30.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37395, sync = True, waitForSettling = True)
17-03-17 18:06:30.018 -07 000000610 INF: Z Motor: Moving to -0.171183 mm, started at -0.177916 mm, distance = 6.73 um
17-03-17 18:06:30.018 -07 000000610 INF: FPGA: Xmit ZDACW 37395\n [Z Motor]
17-03-17 18:06:30.018 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:06:30.028 -07 000000610 INF: FPGA: 'ZDACW 37395' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:30.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:30.028 -07 000000459 INF: FPGA: Recv ZDACR 37395
17-03-17 18:06:30.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:30.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:06:30.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:30.188 -07 000000431 INF: FPGA: Recv ZSGSRD 35941
17-03-17 18:06:30.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:30.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:30.198 -07 000000459 INF: FPGA: Recv ZSGSRD 35935
17-03-17 18:06:30.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:30.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:30.208 -07 000000431 INF: FPGA: Recv ZSGSRD 35937
17-03-17 18:06:30.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:30.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:30.218 -07 000000623 INF: FPGA: Recv ZSGSRD 35939
17-03-17 18:06:30.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:30.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:30.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35936
17-03-17 18:06:30.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:30.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:30.238 -07 000000458 INF: FPGA: Recv ZSGSRD 35931
17-03-17 18:06:30.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:30.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:30.258 -07 000000623 INF: FPGA: Recv ZSGSRD 35941
17-03-17 18:06:30.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:06:30.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:30.268 -07 000000576 INF: FPGA: Recv ZSGSRD 35933
17-03-17 18:06:30.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:30.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:30.278 -07 000000459 INF: FPGA: Recv ZSGSRD 35937
17-03-17 18:06:30.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:06:30.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:30.288 -07 000000480 INF: FPGA: Recv ZSGSRD 35937
17-03-17 18:06:30.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:30.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:30.298 -07 000000459 INF: FPGA: Recv ZPIEZORD 31817
17-03-17 18:06:30.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:30.308 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -9.1 V.
17-03-17 18:06:30.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35937 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35937 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35931 (-170.3 uncal um), Max = 35941 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:06:30.308 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35937, posNoise = 4, negNoise = 6
17-03-17 18:06:30.308 -07 000000610 INF: Z Motor: After move to -0.171183, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:30.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 18:06:30.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:30.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:30.308 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:30.308 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:30.308 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:06:30.308 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:30.308 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:06:30.308 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:06:30.308 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:30.308 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:06:30.308 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:06:30.308 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:06:30.318 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:06:30.318 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:06:30.318 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:06:30.318 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:06:30.318 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:06:30.318 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:06:30.318 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:06:30.318 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:06:30.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37571 150\n [Camera]
17-03-17 18:06:30.528 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:06:30.918 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:06:30.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:06:30.918 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:30.918 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:30.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) start.
17-03-17 18:06:30.918 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:06:30.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:06:30.918 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:30.918 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:30.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:06:31.118 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37571 778
17-03-17 18:06:31.258 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:06:31.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:06:31.318 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:06:31.318 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:31.318 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:06:31.318 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:06:31.318 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:31.318 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:31.318 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:06:31.318 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:31.328 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:06:31.448 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:06:31.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:06:31.448 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:31.448 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:31.448 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:06:31.448 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:06:31.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:06:31.448 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:31.448 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:31.448 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:06:31.558 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:31.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:31.638 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:06:31.638 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:06:31.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37571 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-17 18:06:31.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:06:31.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171190263749598. ------
17-03-17 18:06:31.758 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:31.758 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17786 mm
17-03-17 18:06:31.758 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:06:31.768 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:31.768 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:06:31.768 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:06:31.768 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 38853, sync = True, waitForSettling = False)
17-03-17 18:06:31.768 -07 000000409 INF: Z Motor: Moving to -0.177858 mm, started at -0.171190 mm, distance = -6.67 um
17-03-17 18:06:31.768 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:06:31.768 -07 000000478 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 18:06:31.778 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:31.778 -07 000000431 INF: FPGA: Recv YRDPOS 127786
17-03-17 18:06:31.788 -07 000000409 INF: FPGA: Xmit ZDACW 38853\n [Z Motor]
17-03-17 18:06:31.788 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:06:31.788 -07 000000478 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:31.788 -07 000000478 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:06:31.788 -07 000000478 INF: Y Motor: Moving 1339 steps-15
17-03-17 18:06:31.788 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:06:31.798 -07 000000409 INF: FPGA: 'ZDACW 38853' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:06:31.798 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:06:31.808 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:31.808 -07 000000431 INF: FPGA: Recv ZDACR 38853
17-03-17 18:06:31.818 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:06:31.818 -07 000000409 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 18:06:31.848 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:06:31.848 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:06:31.848 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:31.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:06:31.848 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:06:31.848 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:31.858 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:06:31.858 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 18:06:31.858 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:06:31.858 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:06:32.748 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:06:32.748 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 18:06:32.748 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 970 ms to get response, and 978 ms overall
17-03-17 18:06:32.748 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 941 ms to get response, and 960 ms overall
17-03-17 18:06:32.778 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:32.778 -07 000000547 INF: FPGA: Recv YRDPOS 129483
17-03-17 18:06:32.788 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:06:32.788 -07 000000478 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:32.788 -07 000000478 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:06:32.788 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 960 ms, distance = 0.837 mm, average velocity = 0.872 mm/sec
17-03-17 18:06:33.738 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:33.738 -07 000000476 INF: FPGA: Recv YRDPOS 129483
17-03-17 18:06:33.748 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:33.748 -07 000000478 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:33.768 -07 000000478 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:06:33.768 -07 000000478 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:06:33.768 -07 000000478 INF: Y Motor: Moved to 63.2241 after 1998 ms (table move)
17-03-17 18:06:33.768 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177858 mm (DAC = 38853)
17-03-17 18:06:33.768 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:33.768 -07 000000478 INF: FPGA: Recv ZSGSRD 36978
17-03-17 18:06:33.778 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:06:33.778 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:33.778 -07 000000478 INF: FPGA: Recv ZSGSRD 36975
17-03-17 18:06:33.788 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:33.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:33.788 -07 000000547 INF: FPGA: Recv ZSGSRD 36982
17-03-17 18:06:33.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:33.798 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:33.798 -07 000000409 INF: FPGA: Recv ZSGSRD 36974
17-03-17 18:06:33.808 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:33.808 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:33.808 -07 000000480 INF: FPGA: Recv ZSGSRD 36971
17-03-17 18:06:33.818 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:33.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:33.818 -07 000000462 INF: FPGA: Recv ZSGSRD 36983
17-03-17 18:06:33.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:33.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:33.828 -07 000000409 INF: FPGA: Recv ZSGSRD 36969
17-03-17 18:06:33.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:33.838 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:33.838 -07 000000431 INF: FPGA: Recv ZSGSRD 36974
17-03-17 18:06:33.848 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:33.848 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:33.848 -07 000000458 INF: FPGA: Recv ZSGSRD 36975
17-03-17 18:06:33.858 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:33.858 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:33.858 -07 000000478 INF: FPGA: Recv ZSGSRD 36978
17-03-17 18:06:33.868 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:33.868 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:33.868 -07 000000480 INF: FPGA: Recv ZPIEZORD 33217
17-03-17 18:06:33.878 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:33.878 -07 000000623 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.3 V.
17-03-17 18:06:33.878 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36976 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36975 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36969 (-176.9 uncal um), Max = 36983 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:06:33.878 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36976, posNoise = 7, negNoise = 7
17-03-17 18:06:33.878 -07 000000623 INF: Z Motor: After move to -0.177858, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:33.878 -07 000000623 INF: Z Motor: Settle wait time = 2002 ms, measure time = 107 ms (allowed 150 ms), total time = 2109 ms
17-03-17 18:06:33.878 -07 000000623 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:06:33.928 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2160 ms
17-03-17 18:06:33.928 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:06:33.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:33.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:33.928 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:33.928 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:33.928 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:06:33.928 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:33.928 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:33.928 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:06:33.938 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:06:33.938 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:06:33.948 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:06:33.948 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:06:33.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:06:33.988 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:06:34.188 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:06:34.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:06:34.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:06:34.198 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.996267,
17-03-17 18:06:34.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:06:34.228 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:06:34.228 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:06:34.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:06:34.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:06:34.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:34.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:06:34.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:06:34.328 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:34.328 -07 000000429 INF: Autofocus start
17-03-17 18:06:34.328 -07 000000429 INF: MeasureProfile start
17-03-17 18:06:34.328 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:34.338 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:34.338 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:06:34.348 -07 000000429 INF: MeasureProfile done
17-03-17 18:06:34.348 -07 000000429 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:06:34.348 -07 000000429 INF: Autofocus finished
17-03-17 18:06:34.538 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:06:34.538 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:06:34.538 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177865020164888. ----------
17-03-17 18:06:34.538 -07 000000610 INF: Cycle	9	Tile	5	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:06:34.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37333, sync = True, waitForSettling = True)
17-03-17 18:06:34.548 -07 000000610 INF: Z Motor: Moving to -0.170900 mm, started at -0.177865 mm, distance = 6.97 um
17-03-17 18:06:34.548 -07 000000610 INF: FPGA: Xmit ZDACW 37333\n [Z Motor]
17-03-17 18:06:34.548 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:06:34.558 -07 000000610 INF: FPGA: 'ZDACW 37333' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:34.558 -07 000000547 INF: FPGA: Recv ZDACR 37333
17-03-17 18:06:34.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:06:34.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:34.718 -07 000000462 INF: FPGA: Recv ZSGSRD 35891
17-03-17 18:06:34.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:34.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:34.728 -07 000000462 INF: FPGA: Recv ZSGSRD 35894
17-03-17 18:06:34.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:34.738 -07 000000409 INF: FPGA: Recv ZSGSRD 35891
17-03-17 18:06:34.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:34.748 -07 000000409 INF: FPGA: Recv ZSGSRD 35893
17-03-17 18:06:34.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:34.758 -07 000000409 INF: FPGA: Recv ZSGSRD 35895
17-03-17 18:06:34.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:34.768 -07 000000476 INF: FPGA: Recv ZSGSRD 35889
17-03-17 18:06:34.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:34.778 -07 000000476 INF: FPGA: Recv ZSGSRD 35892
17-03-17 18:06:34.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:34.788 -07 000000462 INF: FPGA: Recv ZSGSRD 35894
17-03-17 18:06:34.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:34.798 -07 000000462 INF: FPGA: Recv ZSGSRD 35891
17-03-17 18:06:34.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:34.808 -07 000000476 INF: FPGA: Recv ZSGSRD 35895
17-03-17 18:06:34.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:34.818 -07 000000476 INF: FPGA: Recv ZPIEZORD 31778
17-03-17 18:06:34.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:34.828 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -9.1 V.
17-03-17 18:06:34.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35892 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35892 (-170.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35889 (-170.0 uncal um), Max = 35895 (-170.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:06:34.828 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35892, posNoise = 3, negNoise = 3
17-03-17 18:06:34.828 -07 000000610 INF: Z Motor: After move to -0.170900, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:34.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:06:34.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:34.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:34.828 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:34.828 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:34.828 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:06:34.828 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:34.828 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:06:34.828 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:06:34.828 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:06:34.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:06:34.828 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:06:34.828 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:06:34.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:06:34.838 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 18:06:34.838 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:06:34.838 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:06:34.848 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:06:34.848 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:06:34.848 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:06:34.848 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:06:34.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37510 150\n [Camera]
17-03-17 18:06:35.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:06:35.438 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:06:35.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:06:35.438 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:35.438 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:06:35.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:06:35.438 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:35.438 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:35.438 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:06:35.448 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:35.448 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:06:35.628 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37510 776
17-03-17 18:06:35.778 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:06:35.838 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:06:35.838 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:06:35.838 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:35.838 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:06:35.838 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:06:35.838 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:06:35.838 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:06:35.838 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:35.848 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:35.848 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:06:35.968 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:06:35.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:06:35.968 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:35.968 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:06:35.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:06:35.968 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:36.088 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:36.088 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:06:36.088 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:36.088 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:06:36.158 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:06:36.158 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:06:36.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37510 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 18:06:36.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:06:36.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170901174203219. ------
17-03-17 18:06:36.168 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:36.168 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17737 mm
17-03-17 18:06:36.168 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:06:36.168 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:36.168 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38746, sync = True, waitForSettling = False)
17-03-17 18:06:36.168 -07 000000429 INF: Z Motor: Moving to -0.177368 mm, started at -0.170901 mm, distance = -6.47 um
17-03-17 18:06:36.168 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:06:36.168 -07 000000431 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 18:06:36.178 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:36.178 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:36.178 -07 000000409 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:06:36.188 -07 000000429 INF: FPGA: Xmit ZDACW 38746\n [Z Motor]
17-03-17 18:06:36.188 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:06:36.188 -07 000000431 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:36.188 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:06:36.188 -07 000000431 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:06:36.188 -07 000000431 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:06:36.198 -07 000000429 INF: FPGA: 'ZDACW 38746' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:06:36.198 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:06:36.208 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:06:36.218 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:36.218 -07 000000501 INF: FPGA: Recv ZDACR 38746
17-03-17 18:06:36.228 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:06:36.228 -07 000000429 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:06:36.398 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:06:36.398 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:06:36.468 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:06:36.468 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:06:36.468 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:36.468 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:06:36.468 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:06:36.468 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:36.468 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:06:36.478 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:36.478 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 18:06:36.478 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 18:06:36.558 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:36.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:36.578 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:06:36.578 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:06:36.618 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:36.618 -07 000000462 INF: FPGA: Recv YRDPOS 131188
17-03-17 18:06:36.628 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:06:36.628 -07 000000431 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:36.628 -07 000000431 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 18:06:36.628 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.134 mm/sec
17-03-17 18:06:37.578 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:37.578 -07 000000458 INF: FPGA: Recv YRDPOS 131189
17-03-17 18:06:37.588 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:37.588 -07 000000431 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:37.598 -07 000000431 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:06:37.598 -07 000000431 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:06:37.598 -07 000000431 INF: Y Motor: Moved to 64.0571 after 1429 ms (table move)
17-03-17 18:06:37.608 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177368 mm (DAC = 38746)
17-03-17 18:06:37.608 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:37.608 -07 000000429 INF: FPGA: Recv ZSGSRD 36893
17-03-17 18:06:37.618 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:37.618 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:37.618 -07 000000431 INF: FPGA: Recv ZSGSRD 36903
17-03-17 18:06:37.628 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:37.628 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:37.628 -07 000000623 INF: FPGA: Recv ZSGSRD 36894
17-03-17 18:06:37.638 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:37.638 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:37.638 -07 000000623 INF: FPGA: Recv ZSGSRD 36907
17-03-17 18:06:37.648 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:37.648 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:37.648 -07 000000480 INF: FPGA: Recv ZSGSRD 36902
17-03-17 18:06:37.658 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:37.658 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:37.658 -07 000000480 INF: FPGA: Recv ZSGSRD 36901
17-03-17 18:06:37.668 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:37.668 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:37.668 -07 000000623 INF: FPGA: Recv ZSGSRD 36901
17-03-17 18:06:37.678 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:37.678 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:37.678 -07 000000623 INF: FPGA: Recv ZSGSRD 36897
17-03-17 18:06:37.688 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:37.688 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:37.688 -07 000000623 INF: FPGA: Recv ZSGSRD 36898
17-03-17 18:06:37.698 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:37.698 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:37.698 -07 000000429 INF: FPGA: Recv ZSGSRD 36896
17-03-17 18:06:37.708 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:37.708 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:37.708 -07 000000429 INF: FPGA: Recv ZPIEZORD 33134
17-03-17 18:06:37.718 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:37.718 -07 000000547 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.912 V. Piezo Error = -8.3 V.
17-03-17 18:06:37.718 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36899 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36900 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36893 (-176.4 uncal um), Max = 36907 (-176.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:06:37.718 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36899, posNoise = 8, negNoise = 6
17-03-17 18:06:37.718 -07 000000547 INF: Z Motor: After move to -0.177368, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:37.718 -07 000000547 INF: Z Motor: Settle wait time = 1433 ms, measure time = 111 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:06:37.718 -07 000000547 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:06:37.758 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 18:06:37.758 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:06:37.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:37.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:37.758 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:37.758 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:37.758 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:06:37.758 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:37.758 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:37.758 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:06:37.768 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:06:37.768 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:06:37.778 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:06:37.778 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:06:37.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:06:37.828 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:06:38.028 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:06:38.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:06:38.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:06:38.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 18:06:38.068 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:06:38.068 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 18:06:38.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 18:06:38.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:06:38.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:38.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:06:38.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:06:38.168 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:38.168 -07 000000501 INF: Autofocus start
17-03-17 18:06:38.168 -07 000000501 INF: MeasureProfile start
17-03-17 18:06:38.168 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:38.178 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:38.178 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:06:38.188 -07 000000501 INF: MeasureProfile done
17-03-17 18:06:38.188 -07 000000501 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:06:38.188 -07 000000501 INF: Autofocus finished
17-03-17 18:06:38.378 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:06:38.378 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:06:38.378 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177370355829972. ----------
17-03-17 18:06:38.378 -07 000000610 INF: Cycle	9	Tile	6	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:06:38.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37279, sync = True, waitForSettling = True)
17-03-17 18:06:38.388 -07 000000610 INF: Z Motor: Moving to -0.170652 mm, started at -0.177370 mm, distance = 6.72 um
17-03-17 18:06:38.388 -07 000000610 INF: FPGA: Xmit ZDACW 37279\n [Z Motor]
17-03-17 18:06:38.388 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:06:38.398 -07 000000610 INF: FPGA: 'ZDACW 37279' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:06:38.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:38.398 -07 000000409 INF: FPGA: Recv ZDACR 37279
17-03-17 18:06:38.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:38.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:06:38.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:38.558 -07 000000409 INF: FPGA: Recv ZSGSRD 35850
17-03-17 18:06:38.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:38.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:38.568 -07 000000478 INF: FPGA: Recv ZSGSRD 35855
17-03-17 18:06:38.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:38.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:38.578 -07 000000547 INF: FPGA: Recv ZSGSRD 35856
17-03-17 18:06:38.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:38.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:38.588 -07 000000459 INF: FPGA: Recv ZSGSRD 35850
17-03-17 18:06:38.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:38.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:38.598 -07 000000409 INF: FPGA: Recv ZSGSRD 35852
17-03-17 18:06:38.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:38.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:38.608 -07 000000458 INF: FPGA: Recv ZSGSRD 35859
17-03-17 18:06:38.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:38.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:38.618 -07 000000547 INF: FPGA: Recv ZSGSRD 35857
17-03-17 18:06:38.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:38.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:38.628 -07 000000459 INF: FPGA: Recv ZSGSRD 35853
17-03-17 18:06:38.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:38.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:38.638 -07 000000476 INF: FPGA: Recv ZSGSRD 35850
17-03-17 18:06:38.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:38.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:38.648 -07 000000458 INF: FPGA: Recv ZSGSRD 35858
17-03-17 18:06:38.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:38.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:38.658 -07 000000480 INF: FPGA: Recv ZPIEZORD 31742
17-03-17 18:06:38.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:38.668 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.688 V. Piezo Error = -9.1 V.
17-03-17 18:06:38.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35854 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35854 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35850 (-169.8 uncal um), Max = 35859 (-169.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:06:38.668 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35854, posNoise = 5, negNoise = 4
17-03-17 18:06:38.668 -07 000000610 INF: Z Motor: After move to -0.170652, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:38.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:06:38.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:38.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:38.668 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:38.668 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:06:38.668 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:38.668 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:06:38.668 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:06:38.668 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:38.668 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:38.668 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:06:38.668 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:06:38.668 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:06:38.668 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:06:38.678 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:06:38.678 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:06:38.678 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:06:38.688 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:06:38.688 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:06:38.688 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:06:38.688 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:06:38.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37456 150\n [Camera]
17-03-17 18:06:38.888 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:06:39.278 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:06:39.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:06:39.288 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:39.288 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:06:39.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:06:39.288 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:39.288 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:39.288 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:06:39.288 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:39.288 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 18:06:39.478 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37456 776
17-03-17 18:06:39.558 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.988112,
17-03-17 18:06:39.628 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:06:39.678 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:06:39.678 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:06:39.678 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:39.688 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:06:39.688 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:06:39.688 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:39.688 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:06:39.688 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:06:39.688 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:06:39.698 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:06:39.818 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-17 18:06:39.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-17 18:06:39.818 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:39.818 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-17 18:06:39.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-17 18:06:39.818 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:39.828 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:39.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:06:39.828 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:39.828 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 18:06:40.008 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:06:40.008 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:06:40.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37456 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 18:06:40.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:06:40.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170657054141832. ------
17-03-17 18:06:40.008 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:40.008 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17709 mm
17-03-17 18:06:40.008 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:06:40.008 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:06:40.008 -07 000000576 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 18:06:40.008 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38686, sync = True, waitForSettling = False)
17-03-17 18:06:40.018 -07 000000478 INF: Z Motor: Moving to -0.177093 mm, started at -0.170657 mm, distance = -6.44 um
17-03-17 18:06:40.018 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:40.018 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:06:40.018 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:40.018 -07 000000429 INF: FPGA: Recv YRDPOS 131189
17-03-17 18:06:40.028 -07 000000478 INF: FPGA: Xmit ZDACW 38686\n [Z Motor]
17-03-17 18:06:40.028 -07 000000576 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:40.028 -07 000000576 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:40.028 -07 000000576 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:06:40.028 -07 000000576 INF: Y Motor: Moving 1337 steps-12
17-03-17 18:06:40.028 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:06:40.038 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:06:40.038 -07 000000478 INF: FPGA: 'ZDACW 38686' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:06:40.048 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:06:40.058 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:40.058 -07 000000431 INF: FPGA: Recv ZDACR 38686
17-03-17 18:06:40.068 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:06:40.068 -07 000000478 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:06:40.228 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:06:40.228 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:06:40.228 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:40.228 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:06:40.228 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:06:40.228 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:40.228 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:40.228 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:40.228 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 18:06:40.238 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:06:40.238 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:06:40.238 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 18:06:40.418 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:06:40.418 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:06:40.458 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:40.458 -07 000000458 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:06:40.468 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:40.468 -07 000000576 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:40.468 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:06:40.468 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 18:06:41.418 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:41.418 -07 000000459 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:06:41.428 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:41.428 -07 000000576 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:41.448 -07 000000576 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:06:41.448 -07 000000576 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:06:41.448 -07 000000576 INF: Y Motor: Moved to 64.8789 after 1431 ms (table move)
17-03-17 18:06:41.448 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177093 mm (DAC = 38686)
17-03-17 18:06:41.448 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:41.448 -07 000000462 INF: FPGA: Recv ZSGSRD 36853
17-03-17 18:06:41.458 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:06:41.458 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:41.458 -07 000000576 INF: FPGA: Recv ZSGSRD 36851
17-03-17 18:06:41.468 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:41.468 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:41.468 -07 000000462 INF: FPGA: Recv ZSGSRD 36857
17-03-17 18:06:41.478 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:41.478 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:41.478 -07 000000480 INF: FPGA: Recv ZSGSRD 36852
17-03-17 18:06:41.488 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:41.488 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:41.488 -07 000000459 INF: FPGA: Recv ZSGSRD 36869
17-03-17 18:06:41.498 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:41.498 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:41.498 -07 000000480 INF: FPGA: Recv ZSGSRD 36861
17-03-17 18:06:41.508 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:41.508 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:41.508 -07 000000459 INF: FPGA: Recv ZSGSRD 36859
17-03-17 18:06:41.518 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:41.518 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:41.518 -07 000000480 INF: FPGA: Recv ZSGSRD 36855
17-03-17 18:06:41.528 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:41.528 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:41.528 -07 000000576 INF: FPGA: Recv ZSGSRD 36852
17-03-17 18:06:41.538 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:41.538 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:41.538 -07 000000547 INF: FPGA: Recv ZSGSRD 36854
17-03-17 18:06:41.548 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:41.548 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:41.548 -07 000000576 INF: FPGA: Recv ZPIEZORD 33095
17-03-17 18:06:41.558 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:41.558 -07 000000623 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.903 V. Piezo Error = -8.3 V.
17-03-17 18:06:41.558 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36856 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36854 (-176.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36851 (-176.2 uncal um), Max = 36869 (-176.3 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:06:41.558 -07 000000623 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36856, posNoise = 13, negNoise = 5
17-03-17 18:06:41.558 -07 000000623 INF: Z Motor: After move to -0.177093, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:41.558 -07 000000623 INF: Z Motor: Settle wait time = 1434 ms, measure time = 108 ms (allowed 150 ms), total time = 1542 ms
17-03-17 18:06:41.558 -07 000000623 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:06:41.558 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:41.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:41.608 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 18:06:41.608 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:06:41.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:41.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:41.608 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:41.608 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:06:41.608 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:41.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:41.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:41.608 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:06:41.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:06:41.618 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:06:41.628 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:06:41.628 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:06:41.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:06:41.678 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:06:41.878 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:06:41.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:06:41.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:06:41.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 18:06:41.918 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:06:41.918 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:06:41.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 18:06:42.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:06:42.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:42.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:06:42.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:06:42.018 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:42.018 -07 000000501 INF: Autofocus start
17-03-17 18:06:42.018 -07 000000501 INF: MeasureProfile start
17-03-17 18:06:42.018 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:42.028 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:42.028 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:06:42.028 -07 000000501 INF: MeasureProfile done
17-03-17 18:06:42.028 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:06:42.028 -07 000000501 INF: Autofocus finished
17-03-17 18:06:42.228 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:06:42.228 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:06:42.228 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.177094114707877. ----------
17-03-17 18:06:42.228 -07 000000610 INF: Cycle	9	Tile	7	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:06:42.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37183, sync = True, waitForSettling = True)
17-03-17 18:06:42.238 -07 000000610 INF: Z Motor: Moving to -0.170213 mm, started at -0.177094 mm, distance = 6.88 um
17-03-17 18:06:42.238 -07 000000610 INF: FPGA: Xmit ZDACW 37183\n [Z Motor]
17-03-17 18:06:42.238 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 18:06:42.248 -07 000000610 INF: FPGA: 'ZDACW 37183' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:06:42.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:42.248 -07 000000576 INF: FPGA: Recv ZDACR 37183
17-03-17 18:06:42.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:06:42.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:42.408 -07 000000459 INF: FPGA: Recv ZSGSRD 35791
17-03-17 18:06:42.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:42.418 -07 000000429 INF: FPGA: Recv ZSGSRD 35787
17-03-17 18:06:42.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:42.428 -07 000000623 INF: FPGA: Recv ZSGSRD 35788
17-03-17 18:06:42.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:42.438 -07 000000462 INF: FPGA: Recv ZSGSRD 35779
17-03-17 18:06:42.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:42.448 -07 000000459 INF: FPGA: Recv ZSGSRD 35789
17-03-17 18:06:42.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:42.458 -07 000000429 INF: FPGA: Recv ZSGSRD 35791
17-03-17 18:06:42.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:42.468 -07 000000458 INF: FPGA: Recv ZSGSRD 35786
17-03-17 18:06:42.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:42.478 -07 000000431 INF: FPGA: Recv ZSGSRD 35789
17-03-17 18:06:42.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:42.488 -07 000000480 INF: FPGA: Recv ZSGSRD 35788
17-03-17 18:06:42.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:42.498 -07 000000476 INF: FPGA: Recv ZSGSRD 35786
17-03-17 18:06:42.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:42.508 -07 000000501 INF: FPGA: Recv ZPIEZORD 31669
17-03-17 18:06:42.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:42.518 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -9.1 V.
17-03-17 18:06:42.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35787 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35788 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35779 (-169.3 uncal um), Max = 35791 (-169.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:06:42.518 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35787, posNoise = 4, negNoise = 8
17-03-17 18:06:42.518 -07 000000610 INF: Z Motor: After move to -0.170213, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:42.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:06:42.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:42.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:42.518 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:42.518 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:06:42.518 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:42.518 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:42.518 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:06:42.518 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:06:42.518 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:06:42.518 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:06:42.518 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:06:42.518 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:06:42.518 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:06:42.518 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:06:42.518 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:06:42.518 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:06:42.528 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:06:42.538 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:06:42.538 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:06:42.538 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:06:42.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37360 150\n [Camera]
17-03-17 18:06:42.738 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:06:43.128 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:06:43.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:06:43.128 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:43.128 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:43.128 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:06:43.128 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:06:43.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:06:43.138 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:43.138 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:43.138 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:06:43.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37360 776
17-03-17 18:06:43.468 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:06:43.528 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:06:43.528 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:06:43.528 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:43.538 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:06:43.538 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:06:43.538 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:06:43.538 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:06:43.538 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:43.538 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:06:43.548 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:06:43.658 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:06:43.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:06:43.658 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:43.778 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:06:43.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:06:43.778 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:43.778 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:43.778 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:06:43.778 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:43.778 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:06:43.848 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:06:43.848 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:06:43.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37360 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-17 18:06:43.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:06:43.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170226631928334. ------
17-03-17 18:06:43.858 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17674 mm
17-03-17 18:06:43.858 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:06:43.858 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:43.858 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:06:43.858 -07 000000623 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 18:06:43.868 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:44.178 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:06:44.178 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:06:44.178 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:44.178 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:06:44.178 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:06:44.178 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:44.178 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:44.178 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:44.178 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 18:06:44.188 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:06:44.238 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:44.238 -07 000000576 INF: FPGA: Recv YRDPOS 132872
17-03-17 18:06:44.238 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 372 ms to get response, and 376 ms overall
17-03-17 18:06:44.238 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 362 ms to get response, and 373 ms overall
17-03-17 18:06:44.238 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:44.238 -07 000000623 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:06:44.238 -07 000000623 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:06:44.238 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38608, sync = True, waitForSettling = False)
17-03-17 18:06:44.238 -07 000000431 INF: Z Motor: Moving to -0.176736 mm, started at -0.170227 mm, distance = -6.51 um
17-03-17 18:06:44.238 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:06:44.248 -07 000000431 INF: FPGA: Xmit ZDACW 38608\n [Z Motor]
17-03-17 18:06:44.248 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 18:06:44.258 -07 000000431 INF: FPGA: 'ZDACW 38608' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:06:44.258 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:06:44.268 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:44.268 -07 000000576 INF: FPGA: Recv ZDACR 38608
17-03-17 18:06:44.278 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:06:44.288 -07 000000431 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:06:44.438 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:06:44.438 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 18:06:44.628 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:06:44.628 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:06:44.668 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:44.668 -07 000000576 INF: FPGA: Recv YRDPOS 134582
17-03-17 18:06:44.678 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:44.678 -07 000000623 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:44.678 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:06:44.678 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-17 18:06:44.918 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.996267,
17-03-17 18:06:45.628 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:45.628 -07 000000576 INF: FPGA: Recv YRDPOS 134583
17-03-17 18:06:45.638 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:45.638 -07 000000623 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:45.658 -07 000000623 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:06:45.658 -07 000000623 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:06:45.658 -07 000000623 INF: Y Motor: Moved to 65.7144 after 1796 ms (table move)
17-03-17 18:06:45.658 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176736 mm (DAC = 38608)
17-03-17 18:06:45.658 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:45.668 -07 000000547 INF: FPGA: Recv ZSGSRD 36801
17-03-17 18:06:45.668 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:06:45.668 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:45.668 -07 000000431 INF: FPGA: Recv ZSGSRD 36804
17-03-17 18:06:45.678 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:06:45.678 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:45.678 -07 000000623 INF: FPGA: Recv ZSGSRD 36796
17-03-17 18:06:45.688 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:45.688 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:45.688 -07 000000458 INF: FPGA: Recv ZSGSRD 36803
17-03-17 18:06:45.698 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:45.698 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:45.698 -07 000000576 INF: FPGA: Recv ZSGSRD 36806
17-03-17 18:06:45.708 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:45.708 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:45.708 -07 000000480 INF: FPGA: Recv ZSGSRD 36799
17-03-17 18:06:45.718 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:45.718 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:45.718 -07 000000547 INF: FPGA: Recv ZSGSRD 36806
17-03-17 18:06:45.728 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:45.728 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:45.728 -07 000000480 INF: FPGA: Recv ZSGSRD 36792
17-03-17 18:06:45.738 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:45.738 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:45.738 -07 000000429 INF: FPGA: Recv ZSGSRD 36800
17-03-17 18:06:45.748 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:45.748 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:45.748 -07 000000431 INF: FPGA: Recv ZSGSRD 36804
17-03-17 18:06:45.758 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:45.758 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:45.758 -07 000000576 INF: FPGA: Recv ZPIEZORD 33002
17-03-17 18:06:45.768 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:45.768 -07 000000476 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.891 V. Piezo Error = -8.4 V.
17-03-17 18:06:45.768 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36801 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36802 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36792 (-175.8 uncal um), Max = 36806 (-175.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:06:45.768 -07 000000476 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36801, posNoise = 5, negNoise = 9
17-03-17 18:06:45.768 -07 000000476 INF: Z Motor: After move to -0.176736, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:45.768 -07 000000476 INF: Z Motor: Settle wait time = 1424 ms, measure time = 103 ms (allowed 150 ms), total time = 1527 ms
17-03-17 18:06:45.768 -07 000000476 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 18:06:45.818 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1954 ms
17-03-17 18:06:45.818 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:06:45.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:45.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:45.818 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:45.818 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:45.818 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:06:45.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:45.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:45.818 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:06:45.828 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:06:45.828 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:06:45.838 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:06:45.838 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:06:45.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:06:45.878 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:06:46.078 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:06:46.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:06:46.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:06:46.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 18:06:46.118 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:06:46.118 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 18:06:46.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:06:46.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:06:46.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:46.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:06:46.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:06:46.318 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:46.318 -07 000000480 INF: Autofocus start
17-03-17 18:06:46.318 -07 000000480 INF: MeasureProfile start
17-03-17 18:06:46.318 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:46.328 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:46.328 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:06:46.328 -07 000000480 INF: MeasureProfile done
17-03-17 18:06:46.328 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:06:46.328 -07 000000480 INF: Autofocus finished
17-03-17 18:06:46.528 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:06:46.528 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:06:46.528 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.17674078304008. ----------
17-03-17 18:06:46.528 -07 000000610 INF: Cycle	9	Tile	8	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:06:46.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37105, sync = True, waitForSettling = True)
17-03-17 18:06:46.538 -07 000000610 INF: Z Motor: Moving to -0.169856 mm, started at -0.176741 mm, distance = 6.88 um
17-03-17 18:06:46.538 -07 000000610 INF: FPGA: Xmit ZDACW 37105\n [Z Motor]
17-03-17 18:06:46.538 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:06:46.548 -07 000000610 INF: FPGA: 'ZDACW 37105' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:06:46.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:46.548 -07 000000576 INF: FPGA: Recv ZDACR 37105
17-03-17 18:06:46.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:46.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:06:46.558 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:46.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:46.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:46.708 -07 000000476 INF: FPGA: Recv ZSGSRD 35735
17-03-17 18:06:46.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:46.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:46.718 -07 000000429 INF: FPGA: Recv ZSGSRD 35731
17-03-17 18:06:46.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:46.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:46.728 -07 000000547 INF: FPGA: Recv ZSGSRD 35729
17-03-17 18:06:46.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:46.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:46.738 -07 000000458 INF: FPGA: Recv ZSGSRD 35732
17-03-17 18:06:46.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:46.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:46.748 -07 000000576 INF: FPGA: Recv ZSGSRD 35729
17-03-17 18:06:46.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:46.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:46.758 -07 000000429 INF: FPGA: Recv ZSGSRD 35729
17-03-17 18:06:46.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:46.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:46.768 -07 000000431 INF: FPGA: Recv ZSGSRD 35735
17-03-17 18:06:46.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:46.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:46.778 -07 000000458 INF: FPGA: Recv ZSGSRD 35736
17-03-17 18:06:46.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:46.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:46.788 -07 000000576 INF: FPGA: Recv ZSGSRD 35733
17-03-17 18:06:46.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:46.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:46.798 -07 000000429 INF: FPGA: Recv ZSGSRD 35724
17-03-17 18:06:46.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:46.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:46.808 -07 000000431 INF: FPGA: Recv ZPIEZORD 31579
17-03-17 18:06:46.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:46.818 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -9.2 V.
17-03-17 18:06:46.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35731 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35732 (-169.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35724 (-168.9 uncal um), Max = 35736 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:06:46.818 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35731, posNoise = 5, negNoise = 7
17-03-17 18:06:46.818 -07 000000610 INF: Z Motor: After move to -0.169856, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:46.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:06:46.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:46.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:46.818 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:46.818 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:46.818 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:06:46.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:46.818 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:06:46.818 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:06:46.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:46.818 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:06:46.818 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:06:46.818 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:06:46.818 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:06:46.828 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:06:46.828 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:06:46.828 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:06:46.838 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:06:46.838 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:06:46.838 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:06:46.838 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:06:46.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37282 150\n [Camera]
17-03-17 18:06:47.038 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:06:47.428 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:06:47.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:06:47.438 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:47.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:06:47.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:06:47.438 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:47.438 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:47.438 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) start.
17-03-17 18:06:47.548 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:47.548 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) start.
17-03-17 18:06:47.628 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37282 776
17-03-17 18:06:47.778 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:06:47.818 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:06:47.818 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:06:47.828 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:47.828 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:06:47.828 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:06:47.928 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:06:47.928 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:06:47.928 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:47.928 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:06:47.938 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 18:06:47.958 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:06:47.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:06:47.968 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:47.968 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:06:47.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:06:47.968 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:47.968 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:47.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:06:47.968 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:47.978 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:06:48.158 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:06:48.158 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:06:48.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37282 150' command took 2 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-17 18:06:48.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:06:48.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.169866876048396. ------
17-03-17 18:06:48.158 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:48.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:06:48.358 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:06:48.358 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:48.358 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:06:48.358 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:06:48.358 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:48.358 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:48.358 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:06:48.368 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:48.368 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:06:48.398 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17625 mm
17-03-17 18:06:48.398 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:06:48.398 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:48.398 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 236 ms to get response, and 239 ms overall
17-03-17 18:06:48.398 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:06:48.398 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:06:48.398 -07 000000480 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 18:06:48.408 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:49.248 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38502, sync = True, waitForSettling = False)
17-03-17 18:06:49.248 -07 000000462 INF: Z Motor: Moving to -0.176251 mm, started at -0.169867 mm, distance = -6.38 um
17-03-17 18:06:49.248 -07 000000462 INF: FPGA: Xmit ZDACW 38502\n [Z Motor]
17-03-17 18:06:50.248 -07 000000409 INF: FPGA: Recv YRDPOS 134583
17-03-17 18:06:50.248 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:06:50.248 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 18:06:50.248 -07 000000462 INF: FPGA: 'ZDACW 38502' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 18:06:50.248 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:50.248 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1830 ms to get response, and 1842 ms overall
17-03-17 18:06:50.248 -07 000000480 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:50.248 -07 000000480 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:06:50.248 -07 000000480 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:06:50.248 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1840 ms to get response, and 1844 ms overall
17-03-17 18:06:50.248 -07 000000409 INF: FPGA: Recv ZDACR 38502
17-03-17 18:06:50.258 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:06:50.258 -07 000000462 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 18:06:50.258 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:06:50.558 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.999021,
17-03-17 18:06:50.628 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 18:06:50.628 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:06:50.668 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:50.668 -07 000000409 INF: FPGA: Recv YRDPOS 136272
17-03-17 18:06:50.678 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:50.678 -07 000000480 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:50.678 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:06:50.678 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.172 mm/sec
17-03-17 18:06:51.558 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:51.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:51.628 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:51.628 -07 000000462 INF: FPGA: Recv YRDPOS 136272
17-03-17 18:06:51.638 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:51.638 -07 000000480 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:51.658 -07 000000480 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:06:51.658 -07 000000480 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:06:51.658 -07 000000480 INF: Y Motor: Moved to 66.5391 after 3253 ms (table move)
17-03-17 18:06:51.658 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176251 mm (DAC = 38502)
17-03-17 18:06:51.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:51.658 -07 000000478 INF: FPGA: Recv ZSGSRD 36730
17-03-17 18:06:51.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:06:51.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:51.668 -07 000000459 INF: FPGA: Recv ZSGSRD 36727
17-03-17 18:06:51.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:51.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:51.678 -07 000000462 INF: FPGA: Recv ZSGSRD 36723
17-03-17 18:06:51.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:51.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:51.688 -07 000000480 INF: FPGA: Recv ZSGSRD 36729
17-03-17 18:06:51.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:51.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:51.698 -07 000000458 INF: FPGA: Recv ZSGSRD 36733
17-03-17 18:06:51.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:51.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:51.708 -07 000000480 INF: FPGA: Recv ZSGSRD 36726
17-03-17 18:06:51.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:51.718 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:51.718 -07 000000458 INF: FPGA: Recv ZSGSRD 36732
17-03-17 18:06:51.728 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:51.728 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:51.728 -07 000000501 INF: FPGA: Recv ZSGSRD 36715
17-03-17 18:06:51.738 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:51.738 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:51.738 -07 000000462 INF: FPGA: Recv ZSGSRD 36719
17-03-17 18:06:51.748 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:51.748 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:51.748 -07 000000501 INF: FPGA: Recv ZSGSRD 36728
17-03-17 18:06:51.758 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:51.758 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:51.758 -07 000000458 INF: FPGA: Recv ZPIEZORD 32885
17-03-17 18:06:51.768 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:51.768 -07 000000429 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.5 V.
17-03-17 18:06:51.768 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36726 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36728 (-175.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36715 (-175.3 uncal um), Max = 36733 (-175.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:06:51.768 -07 000000429 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36726, posNoise = 7, negNoise = 11
17-03-17 18:06:51.768 -07 000000429 INF: Z Motor: After move to -0.176251, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:51.768 -07 000000429 INF: Z Motor: Settle wait time = 2413 ms, measure time = 106 ms (allowed 150 ms), total time = 2519 ms
17-03-17 18:06:51.768 -07 000000429 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:06:51.818 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3419 ms
17-03-17 18:06:51.818 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:06:51.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:51.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:51.818 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:51.818 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:51.818 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:06:51.818 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:51.818 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:51.818 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:06:51.828 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:06:51.828 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:06:51.838 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:06:51.838 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:06:51.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:06:51.888 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:06:52.078 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:06:52.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:06:52.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:06:52.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 18:06:52.118 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:06:52.118 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 18:06:52.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:06:52.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 18:06:52.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:52.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:06:52.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 18:06:52.218 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:52.218 -07 000000480 INF: Autofocus start
17-03-17 18:06:52.218 -07 000000480 INF: MeasureProfile start
17-03-17 18:06:52.218 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:52.228 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:06:52.228 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:06:52.238 -07 000000480 INF: MeasureProfile done
17-03-17 18:06:52.238 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:06:52.238 -07 000000480 INF: Autofocus finished
17-03-17 18:06:52.428 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:06:52.428 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:06:52.428 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176258967129448. ----------
17-03-17 18:06:52.438 -07 000000610 INF: Cycle	9	Tile	9	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:06:52.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36999, sync = True, waitForSettling = True)
17-03-17 18:06:52.438 -07 000000610 INF: Z Motor: Moving to -0.169371 mm, started at -0.176259 mm, distance = 6.89 um
17-03-17 18:06:52.438 -07 000000610 INF: FPGA: Xmit ZDACW 36999\n [Z Motor]
17-03-17 18:06:52.438 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:06:52.448 -07 000000610 INF: FPGA: 'ZDACW 36999' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:06:52.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:52.448 -07 000000458 INF: FPGA: Recv ZDACR 36999
17-03-17 18:06:52.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:06:52.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:52.608 -07 000000462 INF: FPGA: Recv ZSGSRD 35651
17-03-17 18:06:52.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:52.618 -07 000000462 INF: FPGA: Recv ZSGSRD 35656
17-03-17 18:06:52.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:52.628 -07 000000462 INF: FPGA: Recv ZSGSRD 35655
17-03-17 18:06:52.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:52.638 -07 000000462 INF: FPGA: Recv ZSGSRD 35658
17-03-17 18:06:52.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:52.648 -07 000000462 INF: FPGA: Recv ZSGSRD 35655
17-03-17 18:06:52.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:52.658 -07 000000462 INF: FPGA: Recv ZSGSRD 35647
17-03-17 18:06:52.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:52.668 -07 000000501 INF: FPGA: Recv ZSGSRD 35659
17-03-17 18:06:52.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:52.678 -07 000000480 INF: FPGA: Recv ZSGSRD 35657
17-03-17 18:06:52.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:52.688 -07 000000458 INF: FPGA: Recv ZSGSRD 35654
17-03-17 18:06:52.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:52.698 -07 000000462 INF: FPGA: Recv ZSGSRD 35655
17-03-17 18:06:52.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:52.708 -07 000000501 INF: FPGA: Recv ZPIEZORD 31489
17-03-17 18:06:52.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:52.718 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.2 V.
17-03-17 18:06:52.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35655 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35655 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35647 (-168.5 uncal um), Max = 35659 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:06:52.718 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35655, posNoise = 4, negNoise = 8
17-03-17 18:06:52.718 -07 000000610 INF: Z Motor: After move to -0.169371, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:52.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:06:52.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:52.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:52.718 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:52.718 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:06:52.718 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:52.718 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:06:52.718 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:06:52.718 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:52.718 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:06:52.718 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:06:52.718 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:06:52.718 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:06:52.728 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:06:52.728 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:06:52.728 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:06:52.728 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:06:52.738 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:06:52.738 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:06:52.738 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:06:52.738 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:06:52.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37175 150\n [Camera]
17-03-17 18:06:52.938 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:06:53.328 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:06:53.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:06:53.328 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:53.328 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:53.328 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:06:53.328 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:06:53.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:06:53.338 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:53.338 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:53.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:06:53.728 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:06:53.728 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:06:53.728 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:53.738 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:06:53.738 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:06:53.738 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:53.738 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:06:53.738 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:06:53.738 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:06:53.748 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:06:53.748 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37175 776
17-03-17 18:06:53.758 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:06:53.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:06:53.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:06:53.858 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:06:53.868 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:06:53.868 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:06:53.868 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:06:53.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:06:53.868 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:06:53.868 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:06:53.868 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 18:06:54.258 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:06:54.258 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:06:54.258 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:54.268 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:06:54.268 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:06:54.268 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:54.268 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:54.268 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:06:54.268 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:06:54.278 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:06:54.338 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:06:54.338 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:06:54.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37175 150' command took 2 ms to send, 1594 ms to get response, and 1598 ms overall
17-03-17 18:06:54.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:06:54.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169378635925622. ------
17-03-17 18:06:54.348 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:54.398 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17621 mm
17-03-17 18:06:54.398 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:06:55.248 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:55.248 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 890 ms to get response, and 900 ms overall
17-03-17 18:06:55.248 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:06:55.248 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:06:55.248 -07 000000623 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 18:06:55.258 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:56.248 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38493, sync = True, waitForSettling = False)
17-03-17 18:06:56.248 -07 000000476 INF: Z Motor: Moving to -0.176210 mm, started at -0.169379 mm, distance = -6.83 um
17-03-17 18:06:56.248 -07 000000476 INF: FPGA: Xmit ZDACW 38493\n [Z Motor]
17-03-17 18:06:57.248 -07 000000478 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:06:57.248 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:06:57.248 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:06:57.248 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:06:57.248 -07 000000476 INF: FPGA: 'ZDACW 38493' command took 0 ms to send, 990 ms to get response, and 997 ms overall
17-03-17 18:06:57.248 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:57.248 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:06:57.248 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1980 ms to get response, and 1998 ms overall
17-03-17 18:06:57.248 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1990 ms to get response, and 1999 ms overall
17-03-17 18:06:57.248 -07 000000623 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:57.248 -07 000000459 INF: FPGA: Recv ZDACR 38493
17-03-17 18:06:57.248 -07 000000623 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:06:57.248 -07 000000623 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:06:57.258 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:06:57.258 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:06:57.258 -07 000000476 INF: Z Motor: MoveAbsStepped took 1006 ms (did NOT wait for settling yet))
17-03-17 18:06:57.558 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.018051,
17-03-17 18:06:57.628 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:06:57.628 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 18:06:57.668 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:57.668 -07 000000478 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:06:57.678 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:06:57.678 -07 000000623 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:57.678 -07 000000623 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 18:06:57.678 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.208 mm/sec
17-03-17 18:06:58.628 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:06:58.628 -07 000000501 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:06:58.638 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:58.638 -07 000000623 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:06:58.658 -07 000000623 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:06:58.658 -07 000000623 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:06:58.658 -07 000000623 INF: Y Motor: Moved to 67.3721 after 3408 ms (table move)
17-03-17 18:06:58.658 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176210 mm (DAC = 38493)
17-03-17 18:06:58.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:58.658 -07 000000429 INF: FPGA: Recv ZSGSRD 36719
17-03-17 18:06:58.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:06:58.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:58.668 -07 000000462 INF: FPGA: Recv ZSGSRD 36714
17-03-17 18:06:58.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:58.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:58.678 -07 000000480 INF: FPGA: Recv ZSGSRD 36712
17-03-17 18:06:58.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:58.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:58.688 -07 000000501 INF: FPGA: Recv ZSGSRD 36717
17-03-17 18:06:58.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:58.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:58.698 -07 000000462 INF: FPGA: Recv ZSGSRD 36728
17-03-17 18:06:58.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:58.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:58.708 -07 000000480 INF: FPGA: Recv ZSGSRD 36716
17-03-17 18:06:58.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:58.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:58.718 -07 000000501 INF: FPGA: Recv ZSGSRD 36715
17-03-17 18:06:58.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:58.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:58.728 -07 000000462 INF: FPGA: Recv ZSGSRD 36720
17-03-17 18:06:58.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:58.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:58.738 -07 000000478 INF: FPGA: Recv ZSGSRD 36713
17-03-17 18:06:58.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:58.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:58.748 -07 000000462 INF: FPGA: Recv ZSGSRD 36721
17-03-17 18:06:58.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:58.758 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:58.758 -07 000000478 INF: FPGA: Recv ZPIEZORD 32882
17-03-17 18:06:58.768 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:58.768 -07 000000431 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.874 V. Piezo Error = -8.5 V.
17-03-17 18:06:58.768 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36718 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36716 (-175.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36712 (-175.3 uncal um), Max = 36728 (-175.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:06:58.768 -07 000000431 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36718, posNoise = 10, negNoise = 6
17-03-17 18:06:58.768 -07 000000431 INF: Z Motor: After move to -0.176210, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:58.768 -07 000000431 INF: Z Motor: Settle wait time = 2412 ms, measure time = 105 ms (allowed 150 ms), total time = 2517 ms
17-03-17 18:06:58.768 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:06:58.818 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4419 ms
17-03-17 18:06:58.818 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:06:58.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:58.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:58.818 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:58.818 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:58.818 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:06:58.818 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:58.818 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:58.818 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:06:58.828 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:06:58.828 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:06:58.838 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:06:58.838 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:06:58.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:06:58.888 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:06:59.088 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:06:59.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:06:59.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:06:59.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2638394752, 0x0, 559484976) start.
17-03-17 18:06:59.128 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:06:59.128 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:06:59.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:06:59.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2638394752, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:06:59.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:06:59.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:06:59.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:06:59.228 -07 000000431 INF: Autofocus start
17-03-17 18:06:59.228 -07 000000431 INF: MeasureProfile start
17-03-17 18:06:59.228 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:06:59.228 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:06:59.238 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:06:59.238 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:06:59.238 -07 000000431 INF: MeasureProfile done
17-03-17 18:06:59.238 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:06:59.238 -07 000000431 INF: Autofocus finished
17-03-17 18:06:59.438 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:06:59.438 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:06:59.438 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176207573432314. ----------
17-03-17 18:06:59.438 -07 000000610 INF: Cycle	9	Tile	10	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:06:59.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37008, sync = True, waitForSettling = True)
17-03-17 18:06:59.448 -07 000000610 INF: Z Motor: Moving to -0.169412 mm, started at -0.176208 mm, distance = 6.80 um
17-03-17 18:06:59.448 -07 000000610 INF: FPGA: Xmit ZDACW 37008\n [Z Motor]
17-03-17 18:06:59.448 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:06:59.458 -07 000000610 INF: FPGA: 'ZDACW 37008' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:06:59.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:06:59.458 -07 000000429 INF: FPGA: Recv ZDACR 37008
17-03-17 18:06:59.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:59.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:06:59.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:59.618 -07 000000576 INF: FPGA: Recv ZSGSRD 35657
17-03-17 18:06:59.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:06:59.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:59.628 -07 000000462 INF: FPGA: Recv ZSGSRD 35664
17-03-17 18:06:59.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:59.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:59.638 -07 000000623 INF: FPGA: Recv ZSGSRD 35661
17-03-17 18:06:59.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:59.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:59.648 -07 000000429 INF: FPGA: Recv ZSGSRD 35660
17-03-17 18:06:59.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:59.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:59.658 -07 000000476 INF: FPGA: Recv ZSGSRD 35657
17-03-17 18:06:59.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:59.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:59.668 -07 000000576 INF: FPGA: Recv ZSGSRD 35661
17-03-17 18:06:59.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:59.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:59.678 -07 000000478 INF: FPGA: Recv ZSGSRD 35662
17-03-17 18:06:59.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:59.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:59.688 -07 000000576 INF: FPGA: Recv ZSGSRD 35662
17-03-17 18:06:59.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:59.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:59.698 -07 000000429 INF: FPGA: Recv ZSGSRD 35664
17-03-17 18:06:59.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:59.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:06:59.708 -07 000000576 INF: FPGA: Recv ZSGSRD 35666
17-03-17 18:06:59.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:59.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:06:59.718 -07 000000623 INF: FPGA: Recv ZPIEZORD 31459
17-03-17 18:06:59.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:06:59.728 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.3 V.
17-03-17 18:06:59.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35661 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35662 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35657 (-168.5 uncal um), Max = 35666 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:06:59.728 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35661, posNoise = 5, negNoise = 4
17-03-17 18:06:59.728 -07 000000610 INF: Z Motor: After move to -0.169412, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:06:59.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:06:59.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:06:59.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:06:59.728 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:06:59.728 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:06:59.728 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:06:59.728 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:06:59.728 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:06:59.728 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:06:59.728 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:06:59.728 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:06:59.728 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:06:59.728 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:06:59.738 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:06:59.738 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:06:59.738 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:06:59.738 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:06:59.748 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 18:06:59.748 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 18:06:59.748 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 18:06:59.748 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:06:59.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 37184 150\n [Camera]
17-03-17 18:06:59.958 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:00.348 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:00.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:00.348 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:00.348 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:00.348 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:07:00.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:00.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:00.348 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:00.348 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:00.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 18:07:00.538 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37184 776
17-03-17 18:07:00.688 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:00.728 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:07:00.728 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:07:00.728 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:00.738 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:07:00.738 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:07:00.738 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:00.738 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:00.738 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:07:00.738 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:00.748 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:07:00.878 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:00.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:00.878 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:00.878 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:00.878 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 18:07:00.878 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:00.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:00.878 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:00.878 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:00.878 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 18:07:01.068 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:07:01.068 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:01.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 37184 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-17 18:07:01.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:07:01.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169417181198472. ------
17-03-17 18:07:01.078 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:01.268 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:07:01.268 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:07:01.268 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:01.278 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:07:01.278 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:07:01.278 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:01.278 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:07:01.278 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:07:01.278 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:01.288 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:07:01.318 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17526 mm
17-03-17 18:07:01.318 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:01.378 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:01.378 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 293 ms to get response, and 302 ms overall
17-03-17 18:07:01.378 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:01.378 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:07:01.378 -07 000000458 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 18:07:01.388 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:02.248 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 38285, sync = True, waitForSettling = False)
17-03-17 18:07:02.248 -07 000000409 INF: Z Motor: Moving to -0.175257 mm, started at -0.169417 mm, distance = -5.84 um
17-03-17 18:07:02.248 -07 000000409 INF: FPGA: Xmit ZDACW 38285\n [Z Motor]
17-03-17 18:07:03.248 -07 000000547 INF: FPGA: Recv YRDPOS 137978
17-03-17 18:07:03.248 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:03.248 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1850 ms to get response, and 1866 ms overall
17-03-17 18:07:03.248 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:03.248 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:07:03.248 -07 000000409 INF: FPGA: 'ZDACW 38285' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-17 18:07:03.248 -07 000000458 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:03.248 -07 000000458 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:03.248 -07 000000458 INF: Y Motor: Moving 1345 steps-22
17-03-17 18:07:03.248 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:03.248 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1860 ms to get response, and 1867 ms overall
17-03-17 18:07:03.248 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:03.248 -07 000000501 INF: FPGA: Recv ZDACR 38285
17-03-17 18:07:03.258 -07 000000409 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:03.258 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:03.258 -07 000000409 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 18:07:03.558 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.015368,
17-03-17 18:07:03.628 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 18:07:03.628 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 18:07:03.668 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:03.668 -07 000000547 INF: FPGA: Recv YRDPOS 139683
17-03-17 18:07:03.678 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:03.678 -07 000000458 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:03.678 -07 000000458 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:07:03.678 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.841 mm, average velocity = 2.178 mm/sec
17-03-17 18:07:04.628 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:04.628 -07 000000459 INF: FPGA: Recv YRDPOS 139684
17-03-17 18:07:04.638 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:04.638 -07 000000458 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:04.648 -07 000000458 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:04.648 -07 000000458 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:07:04.658 -07 000000458 INF: Y Motor: Moved to 68.2051 after 3275 ms (table move)
17-03-17 18:07:04.658 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175257 mm (DAC = 38285)
17-03-17 18:07:04.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:04.658 -07 000000501 INF: FPGA: Recv ZSGSRD 36575
17-03-17 18:07:04.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:04.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:04.668 -07 000000409 INF: FPGA: Recv ZSGSRD 36569
17-03-17 18:07:04.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:04.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:04.678 -07 000000478 INF: FPGA: Recv ZSGSRD 36576
17-03-17 18:07:04.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:04.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:04.688 -07 000000458 INF: FPGA: Recv ZSGSRD 36583
17-03-17 18:07:04.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:04.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:04.698 -07 000000459 INF: FPGA: Recv ZSGSRD 36571
17-03-17 18:07:04.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:04.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:04.708 -07 000000478 INF: FPGA: Recv ZSGSRD 36575
17-03-17 18:07:04.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:04.718 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:04.718 -07 000000501 INF: FPGA: Recv ZSGSRD 36571
17-03-17 18:07:04.728 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:04.728 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:04.728 -07 000000458 INF: FPGA: Recv ZSGSRD 36564
17-03-17 18:07:04.738 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:04.738 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:04.738 -07 000000409 INF: FPGA: Recv ZSGSRD 36569
17-03-17 18:07:04.748 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:04.748 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:04.748 -07 000000458 INF: FPGA: Recv ZSGSRD 36571
17-03-17 18:07:04.758 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:04.758 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:04.758 -07 000000409 INF: FPGA: Recv ZPIEZORD 32681
17-03-17 18:07:04.768 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:04.768 -07 000000429 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.6 V.
17-03-17 18:07:04.768 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36572 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36571 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36564 (-174.3 uncal um), Max = 36583 (-174.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:07:04.768 -07 000000429 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36572, posNoise = 11, negNoise = 8
17-03-17 18:07:04.768 -07 000000429 INF: Z Motor: After move to -0.175257, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:04.768 -07 000000429 INF: Z Motor: Settle wait time = 2412 ms, measure time = 107 ms (allowed 150 ms), total time = 2519 ms
17-03-17 18:07:04.768 -07 000000429 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:04.818 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3499 ms
17-03-17 18:07:04.818 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:04.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:04.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:04.818 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:04.818 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:04.818 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:04.818 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:04.818 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:07:04.818 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:04.828 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:04.828 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:04.828 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:07:04.828 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:07:04.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:04.878 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:07:05.078 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:07:05.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:07:05.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:05.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) start.
17-03-17 18:07:05.118 -07 000000547 INF: FPGA: Recv @CAMSNAP 281
17-03-17 18:07:05.118 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:05.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 286 ms overall
17-03-17 18:07:05.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:07:05.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:05.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:07:05.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:07:05.318 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:05.318 -07 000000478 INF: Autofocus start
17-03-17 18:07:05.318 -07 000000478 INF: MeasureProfile start
17-03-17 18:07:05.318 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:05.328 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:05.328 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:05.328 -07 000000478 INF: MeasureProfile done
17-03-17 18:07:05.328 -07 000000478 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:07:05.328 -07 000000478 INF: Autofocus finished
17-03-17 18:07:05.528 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:05.528 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:07:05.528 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175269638459617. ----------
17-03-17 18:07:05.538 -07 000000610 INF: Cycle	9	Tile	11	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:05.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36818, sync = True, waitForSettling = True)
17-03-17 18:07:05.538 -07 000000610 INF: Z Motor: Moving to -0.168542 mm, started at -0.175270 mm, distance = 6.73 um
17-03-17 18:07:05.538 -07 000000610 INF: FPGA: Xmit ZDACW 36818\n [Z Motor]
17-03-17 18:07:05.538 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:07:05.548 -07 000000610 INF: FPGA: 'ZDACW 36818' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:07:05.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:05.548 -07 000000501 INF: FPGA: Recv ZDACR 36818
17-03-17 18:07:05.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:05.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:05.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:05.708 -07 000000478 INF: FPGA: Recv ZSGSRD 35528
17-03-17 18:07:05.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:05.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:05.718 -07 000000547 INF: FPGA: Recv ZSGSRD 35525
17-03-17 18:07:05.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:05.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:05.728 -07 000000429 INF: FPGA: Recv ZSGSRD 35523
17-03-17 18:07:05.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:05.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:05.738 -07 000000501 INF: FPGA: Recv ZSGSRD 35523
17-03-17 18:07:05.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:05.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:05.748 -07 000000458 INF: FPGA: Recv ZSGSRD 35527
17-03-17 18:07:05.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:05.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:05.758 -07 000000459 INF: FPGA: Recv ZSGSRD 35534
17-03-17 18:07:05.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:05.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:05.768 -07 000000429 INF: FPGA: Recv ZSGSRD 35530
17-03-17 18:07:05.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:05.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:05.778 -07 000000409 INF: FPGA: Recv ZSGSRD 35531
17-03-17 18:07:05.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:05.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:05.788 -07 000000478 INF: FPGA: Recv ZSGSRD 35529
17-03-17 18:07:05.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:05.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:05.798 -07 000000409 INF: FPGA: Recv ZSGSRD 35526
17-03-17 18:07:05.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:05.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:05.808 -07 000000462 INF: FPGA: Recv ZPIEZORD 31270
17-03-17 18:07:05.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:05.818 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.4 V.
17-03-17 18:07:05.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35528 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35523 (-167.7 uncal um), Max = 35534 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:07:05.818 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35528, posNoise = 6, negNoise = 5
17-03-17 18:07:05.818 -07 000000610 INF: Z Motor: After move to -0.168542, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:05.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:07:05.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:05.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:05.818 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:05.818 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:05.818 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:05.818 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:05.818 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:05.818 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:05.818 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:07:05.818 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:05.818 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:05.818 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:05.828 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:07:05.828 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:05.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:07:05.828 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:05.838 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:07:05.838 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:07:05.838 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:07:05.838 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:07:05.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36994 150\n [Camera]
17-03-17 18:07:06.038 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:06.438 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:06.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:06.438 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:06.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:06.438 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:06.438 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:06.438 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 18:07:06.438 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:06.438 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:06.438 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 18:07:06.558 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:06.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:06.628 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36994 776
17-03-17 18:07:06.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:06.818 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:07:06.818 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:07:06.818 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:06.828 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:06.828 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:07:06.828 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:07:06.828 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:07:06.828 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:06.838 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:06.838 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:07:06.968 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:06.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:06.968 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:06.968 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:06.968 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 18:07:06.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:06.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:06.968 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:06.968 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:06.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 18:07:07.158 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:07:07.158 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:07.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36994 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 18:07:07.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:07:07.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168562760983618. ------
17-03-17 18:07:07.158 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:07.158 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17510 mm
17-03-17 18:07:07.158 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:07.168 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:07:07.168 -07 000000458 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 18:07:07.168 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:07.368 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 18:07:07.368 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:07:07.368 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:07.368 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:07:07.368 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:07:07.368 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:07.378 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:07.378 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:07:07.378 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:07:07.378 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:07:07.458 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38250, sync = True, waitForSettling = False)
17-03-17 18:07:07.458 -07 000000547 INF: Z Motor: Moving to -0.175097 mm, started at -0.168563 mm, distance = -6.53 um
17-03-17 18:07:07.458 -07 000000547 INF: FPGA: Xmit ZDACW 38250\n [Z Motor]
17-03-17 18:07:07.468 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:07.468 -07 000000429 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:07:07.468 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:07:07.468 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 303 ms to get response, and 306 ms overall
17-03-17 18:07:07.468 -07 000000547 INF: FPGA: 'ZDACW 38250' command took 0 ms to send, 3 ms to get response, and 12 ms overall
17-03-17 18:07:07.468 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 293 ms to get response, and 300 ms overall
17-03-17 18:07:07.468 -07 000000458 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:07.468 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:07.468 -07 000000458 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:07.468 -07 000000458 INF: Y Motor: Moving 1339 steps-16
17-03-17 18:07:07.468 -07 000000429 INF: FPGA: Recv ZDACR 38250
17-03-17 18:07:07.478 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:07.478 -07 000000547 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-17 18:07:07.478 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:07.488 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:07.678 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:07.678 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 18:07:07.858 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 18:07:07.858 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 392 ms overall
17-03-17 18:07:07.898 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:07.898 -07 000000547 INF: FPGA: Recv YRDPOS 141367
17-03-17 18:07:07.908 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:07.908 -07 000000458 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:07.908 -07 000000458 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:07:07.908 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.131 mm/sec
17-03-17 18:07:08.858 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:08.858 -07 000000547 INF: FPGA: Recv YRDPOS 141368
17-03-17 18:07:08.868 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:08.868 -07 000000458 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:08.888 -07 000000458 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:08.888 -07 000000458 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:07:08.888 -07 000000458 INF: Y Motor: Moved to 69.0273 after 1718 ms (table move)
17-03-17 18:07:08.888 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175097 mm (DAC = 38250)
17-03-17 18:07:08.888 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:08.888 -07 000000429 INF: FPGA: Recv ZSGSRD 36549
17-03-17 18:07:08.898 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:07:08.898 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:08.898 -07 000000547 INF: FPGA: Recv ZSGSRD 36544
17-03-17 18:07:08.908 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:08.918 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.020806,
17-03-17 18:07:08.928 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:08.928 -07 000000458 INF: FPGA: Recv ZSGSRD 36547
17-03-17 18:07:08.938 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:07:08.958 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:08.958 -07 000000547 INF: FPGA: Recv ZSGSRD 36550
17-03-17 18:07:08.968 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:07:08.968 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:08.968 -07 000000476 INF: FPGA: Recv ZSGSRD 36550
17-03-17 18:07:08.978 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:08.998 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:08.998 -07 000000476 INF: FPGA: Recv ZSGSRD 36547
17-03-17 18:07:09.008 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:07:09.008 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.008 -07 000000547 INF: FPGA: Recv ZSGSRD 36550
17-03-17 18:07:09.018 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.018 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.018 -07 000000429 INF: FPGA: Recv ZSGSRD 36540
17-03-17 18:07:09.028 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.028 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.028 -07 000000429 INF: FPGA: Recv ZSGSRD 36542
17-03-17 18:07:09.038 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.038 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.038 -07 000000458 INF: FPGA: Recv ZSGSRD 36548
17-03-17 18:07:09.048 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.048 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:09.048 -07 000000429 INF: FPGA: Recv ZPIEZORD 32719
17-03-17 18:07:09.058 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.058 -07 000000409 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.837 V. Piezo Error = -8.5 V.
17-03-17 18:07:09.058 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36547 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36548 (-174.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36540 (-174.2 uncal um), Max = 36550 (-174.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:07:09.058 -07 000000409 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36547, posNoise = 3, negNoise = 7
17-03-17 18:07:09.058 -07 000000409 INF: Z Motor: After move to -0.175097, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:09.058 -07 000000409 INF: Z Motor: Settle wait time = 1433 ms, measure time = 166 ms (allowed 150 ms), total time = 1599 ms
17-03-17 18:07:09.058 -07 000000409 INF: Z Motor: Warning: Actual position measuring time = 166 ms, longer than max expected time of 150 ms
17-03-17 18:07:09.058 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1891 ms
17-03-17 18:07:09.058 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:09.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:09.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:09.058 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:09.068 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:09.068 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:09.068 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:09.068 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:09.068 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:09.068 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:09.068 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:09.078 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:07:09.078 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:07:09.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:09.128 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:07:09.328 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:07:09.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:07:09.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:09.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2505849160, 0x0, 559484976) start.
17-03-17 18:07:09.358 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:09.358 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:09.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:07:09.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2505849160, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:07:09.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:09.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:07:09.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:07:09.458 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:09.458 -07 000000476 INF: Autofocus start
17-03-17 18:07:09.458 -07 000000476 INF: MeasureProfile start
17-03-17 18:07:09.458 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:09.468 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:09.468 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:09.478 -07 000000476 INF: MeasureProfile done
17-03-17 18:07:09.478 -07 000000476 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:07:09.478 -07 000000476 INF: Autofocus finished
17-03-17 18:07:09.668 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:09.668 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:07:09.668 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175109033156073. ----------
17-03-17 18:07:09.668 -07 000000610 INF: Cycle	9	Tile	12	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:09.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36765, sync = True, waitForSettling = True)
17-03-17 18:07:09.678 -07 000000610 INF: Z Motor: Moving to -0.168299 mm, started at -0.175109 mm, distance = 6.81 um
17-03-17 18:07:09.678 -07 000000610 INF: FPGA: Xmit ZDACW 36765\n [Z Motor]
17-03-17 18:07:09.678 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:07:09.688 -07 000000610 INF: FPGA: 'ZDACW 36765' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:09.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:09.688 -07 000000480 INF: FPGA: Recv ZDACR 36765
17-03-17 18:07:09.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:09.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.848 -07 000000476 INF: FPGA: Recv ZSGSRD 35494
17-03-17 18:07:09.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:09.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.858 -07 000000431 INF: FPGA: Recv ZSGSRD 35485
17-03-17 18:07:09.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.868 -07 000000458 INF: FPGA: Recv ZSGSRD 35490
17-03-17 18:07:09.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.878 -07 000000429 INF: FPGA: Recv ZSGSRD 35490
17-03-17 18:07:09.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.888 -07 000000458 INF: FPGA: Recv ZSGSRD 35491
17-03-17 18:07:09.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.898 -07 000000429 INF: FPGA: Recv ZSGSRD 35485
17-03-17 18:07:09.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.908 -07 000000476 INF: FPGA: Recv ZSGSRD 35486
17-03-17 18:07:09.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.918 -07 000000431 INF: FPGA: Recv ZSGSRD 35488
17-03-17 18:07:09.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35486
17-03-17 18:07:09.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:09.938 -07 000000480 INF: FPGA: Recv ZSGSRD 35488
17-03-17 18:07:09.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:09.948 -07 000000409 INF: FPGA: Recv ZPIEZORD 31277
17-03-17 18:07:09.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:09.958 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.3 V.
17-03-17 18:07:09.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35488 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35488 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35485 (-167.4 uncal um), Max = 35494 (-167.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:07:09.958 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35488, posNoise = 6, negNoise = 3
17-03-17 18:07:09.958 -07 000000610 INF: Z Motor: After move to -0.168299, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:09.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:07:09.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:09.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:09.958 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:09.958 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:09.958 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:09.958 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:09.958 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:09.958 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:09.958 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:09.958 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:09.958 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:07:09.958 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:09.968 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:07:09.968 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:09.968 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:07:09.968 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:09.968 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:07:09.968 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:07:09.968 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:07:09.968 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:07:09.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36942 150\n [Camera]
17-03-17 18:07:10.178 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:10.568 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:10.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:10.568 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:10.568 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:10.568 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 18:07:10.578 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:10.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:10.578 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:10.578 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:10.578 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 18:07:10.768 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36942 776
17-03-17 18:07:10.908 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:10.948 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:07:10.958 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:07:10.958 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:10.958 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:07:10.958 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:07:10.958 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:10.958 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:10.958 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:07:10.958 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:07:10.968 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:07:11.098 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:11.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:11.098 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:11.238 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:11.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:11.238 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:11.238 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 18:07:11.238 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:11.248 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:11.248 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:07:11.288 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:07:11.298 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:11.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36942 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-17 18:07:11.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:07:11.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168305792497948. ------
17-03-17 18:07:11.298 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17473 mm
17-03-17 18:07:11.298 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:11.298 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:11.298 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:07:11.298 -07 000000476 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 18:07:11.298 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:11.308 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:07:11.308 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:11.308 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38170, sync = True, waitForSettling = False)
17-03-17 18:07:11.308 -07 000000623 INF: Z Motor: Moving to -0.174731 mm, started at -0.168306 mm, distance = -6.43 um
17-03-17 18:07:11.308 -07 000000547 INF: FPGA: Recv YRDPOS 141368
17-03-17 18:07:11.318 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:11.318 -07 000000476 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:11.318 -07 000000476 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:11.318 -07 000000476 INF: Y Motor: Moving 1352 steps-32
17-03-17 18:07:11.318 -07 000000623 INF: FPGA: Xmit ZDACW 38170\n [Z Motor]
17-03-17 18:07:11.318 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 18:07:11.328 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:11.328 -07 000000623 INF: FPGA: 'ZDACW 38170' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:07:11.338 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:11.348 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:11.348 -07 000000501 INF: FPGA: Recv ZDACR 38170
17-03-17 18:07:11.358 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:07:11.358 -07 000000623 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:07:11.618 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:07:11.618 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:07:11.618 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:11.618 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:07:11.618 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:07:11.618 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:11.628 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:11.628 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 18:07:11.628 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:11.628 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:07:11.658 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:11.658 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:11.658 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 320 ms to get response, and 350 ms overall
17-03-17 18:07:11.658 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:11.708 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:07:11.708 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:07:11.748 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:11.748 -07 000000576 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:07:11.758 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:11.758 -07 000000476 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:11.758 -07 000000476 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:07:11.758 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-17 18:07:12.708 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:12.708 -07 000000576 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:07:12.718 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:12.718 -07 000000476 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:12.738 -07 000000476 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:12.738 -07 000000476 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:07:12.738 -07 000000476 INF: Y Motor: Moved to 69.8633 after 1431 ms (table move)
17-03-17 18:07:12.738 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174731 mm (DAC = 38170)
17-03-17 18:07:12.738 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:12.738 -07 000000476 INF: FPGA: Recv ZSGSRD 36490
17-03-17 18:07:12.748 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:12.748 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:12.748 -07 000000576 INF: FPGA: Recv ZSGSRD 36486
17-03-17 18:07:12.758 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:12.758 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:12.758 -07 000000482 INF: FPGA: Recv ZSGSRD 36496
17-03-17 18:07:12.768 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:12.768 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:12.768 -07 000000482 INF: FPGA: Recv ZSGSRD 36490
17-03-17 18:07:12.778 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:12.778 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:12.778 -07 000000482 INF: FPGA: Recv ZSGSRD 36496
17-03-17 18:07:12.788 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:12.788 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:12.788 -07 000000476 INF: FPGA: Recv ZSGSRD 36490
17-03-17 18:07:12.798 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:12.798 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:12.798 -07 000000482 INF: FPGA: Recv ZSGSRD 36484
17-03-17 18:07:12.808 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:12.808 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:12.808 -07 000000476 INF: FPGA: Recv ZSGSRD 36490
17-03-17 18:07:12.818 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:12.818 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:12.818 -07 000000576 INF: FPGA: Recv ZSGSRD 36483
17-03-17 18:07:12.828 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:12.828 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:12.828 -07 000000476 INF: FPGA: Recv ZSGSRD 36492
17-03-17 18:07:12.838 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:12.838 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:12.838 -07 000000576 INF: FPGA: Recv ZPIEZORD 32625
17-03-17 18:07:12.848 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:12.848 -07 000000429 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.5 V.
17-03-17 18:07:12.848 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36490 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36490 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36483 (-173.8 uncal um), Max = 36496 (-173.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:07:12.848 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36490, posNoise = 6, negNoise = 7
17-03-17 18:07:12.848 -07 000000429 INF: Z Motor: After move to -0.174731, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:12.848 -07 000000429 INF: Z Motor: Settle wait time = 1433 ms, measure time = 106 ms (allowed 150 ms), total time = 1539 ms
17-03-17 18:07:12.848 -07 000000429 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:12.898 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 18:07:12.898 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:12.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:12.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:12.898 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:12.898 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:12.898 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:12.898 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:12.898 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:07:12.898 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:12.908 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:07:12.908 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:12.908 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:07:12.908 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:07:12.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:12.958 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:07:13.158 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:07:13.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:07:13.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:13.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 18:07:13.198 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:13.198 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:13.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 18:07:13.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:07:13.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:13.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:07:13.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:07:13.298 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:13.298 -07 000000476 INF: Autofocus start
17-03-17 18:07:13.298 -07 000000476 INF: MeasureProfile start
17-03-17 18:07:13.298 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:13.308 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:13.308 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:13.308 -07 000000476 INF: MeasureProfile done
17-03-17 18:07:13.308 -07 000000476 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:07:13.308 -07 000000476 INF: Autofocus finished
17-03-17 18:07:13.508 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:13.508 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:07:13.508 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174742853063992. ----------
17-03-17 18:07:13.508 -07 000000610 INF: Cycle	9	Tile	13	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:13.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36650, sync = True, waitForSettling = True)
17-03-17 18:07:13.518 -07 000000610 INF: Z Motor: Moving to -0.167773 mm, started at -0.174743 mm, distance = 6.97 um
17-03-17 18:07:13.518 -07 000000610 INF: FPGA: Xmit ZDACW 36650\n [Z Motor]
17-03-17 18:07:13.518 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:07:13.528 -07 000000610 INF: FPGA: 'ZDACW 36650' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:13.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:13.528 -07 000000623 INF: FPGA: Recv ZDACR 36650
17-03-17 18:07:13.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:13.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:13.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:13.688 -07 000000623 INF: FPGA: Recv ZSGSRD 35410
17-03-17 18:07:13.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:13.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:13.698 -07 000000476 INF: FPGA: Recv ZSGSRD 35410
17-03-17 18:07:13.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:13.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:13.708 -07 000000482 INF: FPGA: Recv ZSGSRD 35408
17-03-17 18:07:13.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:13.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:13.718 -07 000000576 INF: FPGA: Recv ZSGSRD 35404
17-03-17 18:07:13.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:13.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:13.728 -07 000000623 INF: FPGA: Recv ZSGSRD 35409
17-03-17 18:07:13.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:13.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:13.738 -07 000000480 INF: FPGA: Recv ZSGSRD 35407
17-03-17 18:07:13.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:13.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:13.748 -07 000000482 INF: FPGA: Recv ZSGSRD 35401
17-03-17 18:07:13.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:13.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:13.758 -07 000000480 INF: FPGA: Recv ZSGSRD 35410
17-03-17 18:07:13.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:13.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:13.768 -07 000000482 INF: FPGA: Recv ZSGSRD 35410
17-03-17 18:07:13.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:13.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:13.778 -07 000000480 INF: FPGA: Recv ZSGSRD 35406
17-03-17 18:07:13.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:13.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:13.788 -07 000000429 INF: FPGA: Recv ZPIEZORD 31215
17-03-17 18:07:13.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:13.798 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.2 V.
17-03-17 18:07:13.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35408 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35408 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35401 (-166.9 uncal um), Max = 35410 (-166.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:07:13.798 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35408, posNoise = 2, negNoise = 7
17-03-17 18:07:13.798 -07 000000610 INF: Z Motor: After move to -0.167773, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:13.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:07:13.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:13.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:13.798 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:13.798 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:13.798 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:13.798 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:13.798 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:07:13.798 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:13.798 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:13.798 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:13.798 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:07:13.798 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:13.798 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:07:13.798 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:13.808 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:13.808 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:13.808 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:07:13.808 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:07:13.818 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:07:13.818 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:07:13.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36827 150\n [Camera]
17-03-17 18:07:14.018 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:14.318 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.005817,
17-03-17 18:07:14.408 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:14.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:14.408 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:14.408 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:14.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:14.418 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:14.418 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:14.418 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) start.
17-03-17 18:07:14.418 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:14.418 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) start.
17-03-17 18:07:14.598 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36827 776
17-03-17 18:07:14.748 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:14.788 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 18:07:14.788 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 18:07:14.788 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:14.788 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:07:14.788 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:07:14.788 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:14.798 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:14.798 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:14.798 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:07:14.918 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 18:07:14.938 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:14.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:14.938 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:14.948 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:14.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:14.948 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:14.958 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:14.958 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:14.958 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2430599328, 0x0, 418435064) start.
17-03-17 18:07:14.958 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:07:15.128 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:07:15.128 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:15.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36827 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-17 18:07:15.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:07:15.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.167791855526607. ------
17-03-17 18:07:15.138 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17421 mm
17-03-17 18:07:15.138 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:15.138 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:15.138 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:07:15.138 -07 000000476 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 18:07:15.138 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38057, sync = True, waitForSettling = False)
17-03-17 18:07:15.138 -07 000000459 INF: Z Motor: Moving to -0.174214 mm, started at -0.167792 mm, distance = -6.42 um
17-03-17 18:07:15.148 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:15.148 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:15.148 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:15.148 -07 000000478 INF: FPGA: Recv YRDPOS 143080
17-03-17 18:07:15.158 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:07:15.158 -07 000000476 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:15.158 -07 000000476 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:15.158 -07 000000476 INF: Y Motor: Moving 1343 steps-19
17-03-17 18:07:15.158 -07 000000459 INF: FPGA: Xmit ZDACW 38057\n [Z Motor]
17-03-17 18:07:15.158 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:07:15.168 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:15.168 -07 000000459 INF: FPGA: 'ZDACW 38057' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:07:15.178 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:15.188 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:15.328 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2430599328, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:07:15.328 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:07:15.328 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:15.328 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:15.328 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:07:15.328 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:07:15.328 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:15.338 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:15.338 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:07:15.338 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:07:16.248 -07 000000480 INF: FPGA: Recv ZDACR 38057
17-03-17 18:07:16.248 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:16.248 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:07:16.248 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 1050 ms to get response, and 1080 ms overall
17-03-17 18:07:16.258 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1061 ms to get response, and 1090 ms overall
17-03-17 18:07:16.258 -07 000000459 INF: Z Motor: MoveAbsStepped took 1114 ms (did NOT wait for settling yet))
17-03-17 18:07:16.258 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1071 ms to get response, and 1100 ms overall
17-03-17 18:07:16.288 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:16.288 -07 000000626 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:07:16.298 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:07:16.298 -07 000000476 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:16.298 -07 000000476 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 18:07:16.298 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1101 ms, distance = 0.839 mm, average velocity = 0.762 mm/sec
17-03-17 18:07:16.558 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:16.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:17.248 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:17.248 -07 000000623 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:07:17.258 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:17.258 -07 000000476 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:17.278 -07 000000476 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:17.278 -07 000000476 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:07:17.278 -07 000000476 INF: Y Motor: Moved to 70.6885 after 2133 ms (table move)
17-03-17 18:07:17.278 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174214 mm (DAC = 38057)
17-03-17 18:07:17.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:17.278 -07 000000429 INF: FPGA: Recv ZSGSRD 36413
17-03-17 18:07:17.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:17.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:17.288 -07 000000501 INF: FPGA: Recv ZSGSRD 36404
17-03-17 18:07:17.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:17.298 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:17.298 -07 000000480 INF: FPGA: Recv ZSGSRD 36410
17-03-17 18:07:17.308 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:17.308 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:17.308 -07 000000476 INF: FPGA: Recv ZSGSRD 36408
17-03-17 18:07:17.318 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:17.318 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:17.318 -07 000000476 INF: FPGA: Recv ZSGSRD 36406
17-03-17 18:07:17.328 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:17.328 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:17.328 -07 000000501 INF: FPGA: Recv ZSGSRD 36410
17-03-17 18:07:17.338 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:17.338 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:17.338 -07 000000429 INF: FPGA: Recv ZSGSRD 36410
17-03-17 18:07:17.348 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:17.348 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:17.348 -07 000000462 INF: FPGA: Recv ZSGSRD 36407
17-03-17 18:07:17.358 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:17.358 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:17.358 -07 000000462 INF: FPGA: Recv ZSGSRD 36413
17-03-17 18:07:17.368 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:17.368 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:17.368 -07 000000462 INF: FPGA: Recv ZSGSRD 36408
17-03-17 18:07:17.378 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:17.378 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:17.378 -07 000000462 INF: FPGA: Recv ZPIEZORD 32505
17-03-17 18:07:17.388 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:17.388 -07 000000482 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.807 V. Piezo Error = -8.6 V.
17-03-17 18:07:17.388 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36409 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36409 (-173.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36404 (-173.3 uncal um), Max = 36413 (-173.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:07:17.388 -07 000000482 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36409, posNoise = 4, negNoise = 5
17-03-17 18:07:17.388 -07 000000482 INF: Z Motor: After move to -0.174214, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:17.388 -07 000000482 INF: Z Motor: Settle wait time = 2136 ms, measure time = 107 ms (allowed 150 ms), total time = 2243 ms
17-03-17 18:07:17.388 -07 000000482 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:17.438 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2296 ms
17-03-17 18:07:17.438 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:17.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:17.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:17.438 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:17.438 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:17.438 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:17.438 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:17.438 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:07:17.438 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:17.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:17.448 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:17.458 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:07:17.458 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:07:17.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:17.508 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:07:17.708 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:07:17.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:07:17.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:17.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2482896656, 0x0, 559484976) start.
17-03-17 18:07:17.738 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:17.748 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:17.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:07:17.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2482896656, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 18:07:17.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:17.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:07:17.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:07:17.948 -07 000000462 INF: Autofocus start
17-03-17 18:07:17.948 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:17.948 -07 000000462 INF: MeasureProfile start
17-03-17 18:07:17.948 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:17.958 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:07:17.958 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:17.968 -07 000000462 INF: MeasureProfile done
17-03-17 18:07:17.968 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:07:17.968 -07 000000462 INF: Autofocus finished
17-03-17 18:07:18.158 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:18.158 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:07:18.158 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.17422249188051. ----------
17-03-17 18:07:18.158 -07 000000610 INF: Cycle	9	Tile	14	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:18.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36589, sync = True, waitForSettling = True)
17-03-17 18:07:18.168 -07 000000610 INF: Z Motor: Moving to -0.167494 mm, started at -0.174222 mm, distance = 6.73 um
17-03-17 18:07:18.168 -07 000000610 INF: FPGA: Xmit ZDACW 36589\n [Z Motor]
17-03-17 18:07:18.168 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:07:18.178 -07 000000610 INF: FPGA: 'ZDACW 36589' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:07:18.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:18.178 -07 000000547 INF: FPGA: Recv ZDACR 36589
17-03-17 18:07:18.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:18.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:18.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:18.338 -07 000000547 INF: FPGA: Recv ZSGSRD 35358
17-03-17 18:07:18.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:18.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:18.348 -07 000000626 INF: FPGA: Recv ZSGSRD 35365
17-03-17 18:07:18.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:18.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:18.358 -07 000000626 INF: FPGA: Recv ZSGSRD 35363
17-03-17 18:07:18.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:18.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:18.368 -07 000000626 INF: FPGA: Recv ZSGSRD 35359
17-03-17 18:07:18.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:18.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:18.378 -07 000000626 INF: FPGA: Recv ZSGSRD 35367
17-03-17 18:07:18.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:18.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:18.388 -07 000000459 INF: FPGA: Recv ZSGSRD 35352
17-03-17 18:07:18.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:18.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:18.398 -07 000000482 INF: FPGA: Recv ZSGSRD 35363
17-03-17 18:07:18.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:18.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:18.408 -07 000000482 INF: FPGA: Recv ZSGSRD 35360
17-03-17 18:07:18.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:18.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:18.418 -07 000000482 INF: FPGA: Recv ZSGSRD 35360
17-03-17 18:07:18.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:18.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:18.428 -07 000000462 INF: FPGA: Recv ZSGSRD 35373
17-03-17 18:07:18.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:18.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:18.438 -07 000000476 INF: FPGA: Recv ZPIEZORD 31135
17-03-17 18:07:18.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:18.448 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.3 V.
17-03-17 18:07:18.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35362 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35362 (-166.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 35352 (-166.6 uncal um), Max = 35373 (-166.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:07:18.448 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35362, posNoise = 11, negNoise = 10
17-03-17 18:07:18.448 -07 000000610 INF: Z Motor: After move to -0.167494, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:18.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:07:18.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:18.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:18.448 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:18.448 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:18.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:18.448 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:18.448 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:18.448 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:18.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:18.448 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:18.448 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:07:18.448 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:18.458 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:07:18.458 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:18.458 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:07:18.458 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:18.468 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:07:18.468 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:07:18.468 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:07:18.468 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:07:18.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36766 150\n [Camera]
17-03-17 18:07:18.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:19.058 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:19.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:19.058 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:19.058 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:19.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:19.058 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:19.068 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:19.068 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:07:19.068 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:19.068 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:07:19.248 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36766 776
17-03-17 18:07:19.398 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:19.438 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:07:19.438 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:07:19.438 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:19.438 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:07:19.438 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:07:19.438 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:19.448 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:07:19.448 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:07:19.448 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:19.448 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:07:19.588 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 18:07:19.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 18:07:19.588 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:19.588 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 18:07:19.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 18:07:19.598 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:19.598 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:19.598 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:07:19.598 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:19.598 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:07:19.688 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.014009,
17-03-17 18:07:19.778 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:07:19.778 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:19.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36766 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 18:07:19.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:07:19.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.167496341768086. ------
17-03-17 18:07:19.788 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17419 mm
17-03-17 18:07:19.788 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:19.788 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:19.788 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:19.788 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:07:19.788 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 18:07:19.798 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:07:19.798 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:19.798 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38051, sync = True, waitForSettling = False)
17-03-17 18:07:19.798 -07 000000623 INF: Z Motor: Moving to -0.174186 mm, started at -0.167496 mm, distance = -6.69 um
17-03-17 18:07:19.798 -07 000000626 INF: FPGA: Recv YRDPOS 144770
17-03-17 18:07:19.808 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:19.808 -07 000000623 INF: FPGA: Xmit ZDACW 38051\n [Z Motor]
17-03-17 18:07:19.808 -07 000000462 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:19.808 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:19.808 -07 000000462 INF: Y Motor: Moving 1351 steps-29
17-03-17 18:07:19.808 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:07:19.818 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:19.818 -07 000000623 INF: FPGA: 'ZDACW 38051' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:07:19.828 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:19.838 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:19.838 -07 000000576 INF: FPGA: Recv ZDACR 38051
17-03-17 18:07:19.848 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:07:19.848 -07 000000623 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:07:19.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:07:19.978 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:07:19.978 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:19.978 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:07:19.978 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:07:19.978 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:19.978 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:19.978 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:19.978 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:07:19.988 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:07:20.018 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:20.018 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:07:20.198 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:07:20.198 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:07:20.238 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:20.238 -07 000000458 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:07:20.248 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:20.248 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:20.248 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:07:20.248 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 18:07:21.198 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:21.198 -07 000000478 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:07:21.208 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:21.208 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:21.228 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:21.228 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:07:21.228 -07 000000462 INF: Y Motor: Moved to 71.5190 after 1430 ms (table move)
17-03-17 18:07:21.228 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174186 mm (DAC = 38051)
17-03-17 18:07:21.228 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:21.228 -07 000000431 INF: FPGA: Recv ZSGSRD 36404
17-03-17 18:07:21.238 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:07:21.238 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:21.238 -07 000000429 INF: FPGA: Recv ZSGSRD 36407
17-03-17 18:07:21.248 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:21.248 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:21.248 -07 000000462 INF: FPGA: Recv ZSGSRD 36405
17-03-17 18:07:21.258 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:21.258 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:21.258 -07 000000547 INF: FPGA: Recv ZSGSRD 36403
17-03-17 18:07:21.268 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:21.268 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:21.268 -07 000000626 INF: FPGA: Recv ZSGSRD 36403
17-03-17 18:07:21.278 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:21.278 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:21.278 -07 000000431 INF: FPGA: Recv ZSGSRD 36410
17-03-17 18:07:21.288 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:21.288 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:21.288 -07 000000462 INF: FPGA: Recv ZSGSRD 36404
17-03-17 18:07:21.298 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:21.298 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:21.298 -07 000000429 INF: FPGA: Recv ZSGSRD 36399
17-03-17 18:07:21.308 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:21.308 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:21.308 -07 000000501 INF: FPGA: Recv ZSGSRD 36396
17-03-17 18:07:21.318 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:21.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:21.318 -07 000000626 INF: FPGA: Recv ZSGSRD 36407
17-03-17 18:07:21.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:21.328 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:21.328 -07 000000458 INF: FPGA: Recv ZPIEZORD 32548
17-03-17 18:07:21.338 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:21.338 -07 000000459 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.806 V. Piezo Error = -8.5 V.
17-03-17 18:07:21.338 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36404 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36404 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36396 (-173.3 uncal um), Max = 36410 (-173.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:07:21.338 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36404, posNoise = 6, negNoise = 8
17-03-17 18:07:21.338 -07 000000459 INF: Z Motor: After move to -0.174186, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:21.338 -07 000000459 INF: Z Motor: Settle wait time = 1434 ms, measure time = 106 ms (allowed 150 ms), total time = 1540 ms
17-03-17 18:07:21.338 -07 000000459 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:21.388 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:07:21.388 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:21.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:21.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:21.388 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:21.388 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:21.398 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:21.398 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:21.398 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:21.398 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:21.398 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:21.398 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:21.408 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:07:21.408 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:07:21.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:21.458 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:07:21.558 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:21.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:21.658 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:07:21.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:07:21.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:21.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 18:07:21.688 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:21.698 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:21.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:07:21.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:07:21.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:21.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:07:21.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:07:21.798 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:21.798 -07 000000501 INF: Autofocus start
17-03-17 18:07:21.798 -07 000000501 INF: MeasureProfile start
17-03-17 18:07:21.798 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:21.808 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:07:21.808 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:21.808 -07 000000501 INF: MeasureProfile done
17-03-17 18:07:21.808 -07 000000501 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:07:21.808 -07 000000501 INF: Autofocus finished
17-03-17 18:07:22.008 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:22.008 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:07:22.008 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174190370819801. ----------
17-03-17 18:07:22.008 -07 000000610 INF: Cycle	9	Tile	15	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:22.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36531, sync = True, waitForSettling = True)
17-03-17 18:07:22.018 -07 000000610 INF: Z Motor: Moving to -0.167228 mm, started at -0.174190 mm, distance = 6.96 um
17-03-17 18:07:22.018 -07 000000610 INF: FPGA: Xmit ZDACW 36531\n [Z Motor]
17-03-17 18:07:22.018 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:07:22.028 -07 000000610 INF: FPGA: 'ZDACW 36531' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:22.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:22.028 -07 000000480 INF: FPGA: Recv ZDACR 36531
17-03-17 18:07:22.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:22.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:22.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:22.188 -07 000000501 INF: FPGA: Recv ZSGSRD 35316
17-03-17 18:07:22.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:22.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:22.198 -07 000000478 INF: FPGA: Recv ZSGSRD 35325
17-03-17 18:07:22.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:22.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:22.208 -07 000000462 INF: FPGA: Recv ZSGSRD 35321
17-03-17 18:07:22.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:22.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:22.218 -07 000000480 INF: FPGA: Recv ZSGSRD 35320
17-03-17 18:07:22.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:22.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:22.228 -07 000000476 INF: FPGA: Recv ZSGSRD 35324
17-03-17 18:07:22.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:22.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:22.238 -07 000000431 INF: FPGA: Recv ZSGSRD 35328
17-03-17 18:07:22.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:22.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:22.268 -07 000000623 INF: FPGA: Recv ZSGSRD 35323
17-03-17 18:07:22.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:22.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:22.278 -07 000000480 INF: FPGA: Recv ZSGSRD 35320
17-03-17 18:07:22.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:22.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:22.288 -07 000000476 INF: FPGA: Recv ZSGSRD 35318
17-03-17 18:07:22.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:22.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:22.298 -07 000000478 INF: FPGA: Recv ZSGSRD 35325
17-03-17 18:07:22.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:22.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:22.308 -07 000000431 INF: FPGA: Recv ZPIEZORD 31070
17-03-17 18:07:22.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:22.318 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.4 V.
17-03-17 18:07:22.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35322 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35322 (-166.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35316 (-166.3 uncal um), Max = 35328 (-166.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:07:22.318 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35322, posNoise = 6, negNoise = 6
17-03-17 18:07:22.318 -07 000000610 INF: Z Motor: After move to -0.167228, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:22.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 303 ms)
17-03-17 18:07:22.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:22.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:22.318 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:22.328 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:22.328 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:22.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:22.328 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:22.328 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:22.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:07:22.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:22.328 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:07:22.328 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:22.328 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:07:22.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:07:22.328 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:22.328 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:22.348 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:07:22.348 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:07:22.348 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:07:22.348 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:07:22.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36708 150\n [Camera]
17-03-17 18:07:22.548 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:22.938 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:22.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:22.938 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:22.938 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:22.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:22.948 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:22.948 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:07:22.948 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:22.948 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:22.948 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:07:23.128 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36708 776
17-03-17 18:07:23.278 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:23.318 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 366 ms.
17-03-17 18:07:23.318 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 366 ms.
17-03-17 18:07:23.318 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:23.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:07:23.318 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:07:23.318 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:23.318 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:23.318 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:23.318 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:07:23.328 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:07:23.468 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:23.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:23.468 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:23.578 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:23.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:23.578 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:23.578 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:23.578 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:23.578 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:07:23.578 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:07:23.658 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:07:23.658 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:23.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36708 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 18:07:23.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:07:23.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167239373282415. ------
17-03-17 18:07:23.668 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17325 mm
17-03-17 18:07:23.668 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:23.668 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:23.668 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:07:23.668 -07 000000429 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 18:07:23.668 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37847, sync = True, waitForSettling = False)
17-03-17 18:07:23.668 -07 000000480 INF: Z Motor: Moving to -0.173252 mm, started at -0.167239 mm, distance = -6.01 um
17-03-17 18:07:23.668 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:23.678 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:07:23.678 -07 000000480 INF: FPGA: Xmit ZDACW 37847\n [Z Motor]
17-03-17 18:07:23.678 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:07:23.688 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:23.688 -07 000000480 INF: FPGA: 'ZDACW 37847' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:07:23.688 -07 000000626 INF: FPGA: Recv YRDPOS 146471
17-03-17 18:07:23.698 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:23.698 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:07:23.698 -07 000000429 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:23.698 -07 000000429 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:23.698 -07 000000429 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:07:23.708 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:23.708 -07 000000476 INF: FPGA: Recv ZDACR 37847
17-03-17 18:07:23.718 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:23.718 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:07:23.718 -07 000000480 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:07:23.898 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:23.898 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:07:23.958 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:07:23.958 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:07:23.958 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:23.958 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:07:23.958 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:07:23.958 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:23.968 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:07:23.968 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:23.968 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-17 18:07:23.968 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:07:24.088 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 18:07:24.088 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:07:24.128 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:24.128 -07 000000458 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:07:24.138 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:07:24.138 -07 000000429 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:24.138 -07 000000429 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:07:24.138 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 18:07:25.048 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.993549,
17-03-17 18:07:25.088 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:25.088 -07 000000626 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:07:25.098 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:25.098 -07 000000429 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:25.118 -07 000000429 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:25.118 -07 000000429 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:07:25.118 -07 000000429 INF: Y Motor: Moved to 72.3496 after 1445 ms (table move)
17-03-17 18:07:25.118 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173252 mm (DAC = 37847)
17-03-17 18:07:25.118 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:25.118 -07 000000409 INF: FPGA: Recv ZSGSRD 36264
17-03-17 18:07:25.128 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:07:25.128 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:25.128 -07 000000476 INF: FPGA: Recv ZSGSRD 36254
17-03-17 18:07:25.138 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:25.138 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:25.138 -07 000000458 INF: FPGA: Recv ZSGSRD 36258
17-03-17 18:07:25.148 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:25.148 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:25.148 -07 000000476 INF: FPGA: Recv ZSGSRD 36258
17-03-17 18:07:25.158 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:25.158 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:25.158 -07 000000476 INF: FPGA: Recv ZSGSRD 36265
17-03-17 18:07:25.168 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:25.168 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:25.168 -07 000000476 INF: FPGA: Recv ZSGSRD 36261
17-03-17 18:07:25.178 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:25.178 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:25.178 -07 000000431 INF: FPGA: Recv ZSGSRD 36259
17-03-17 18:07:25.188 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:25.188 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:25.188 -07 000000429 INF: FPGA: Recv ZSGSRD 36252
17-03-17 18:07:25.198 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:25.198 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:25.198 -07 000000429 INF: FPGA: Recv ZSGSRD 36252
17-03-17 18:07:25.208 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:25.208 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:25.208 -07 000000429 INF: FPGA: Recv ZSGSRD 36256
17-03-17 18:07:25.218 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:25.218 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:25.218 -07 000000429 INF: FPGA: Recv ZPIEZORD 32382
17-03-17 18:07:25.228 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:25.228 -07 000000576 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.775 V. Piezo Error = -8.6 V.
17-03-17 18:07:25.228 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36258 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36258 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36252 (-172.3 uncal um), Max = 36265 (-172.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:07:25.228 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36258, posNoise = 7, negNoise = 6
17-03-17 18:07:25.228 -07 000000576 INF: Z Motor: After move to -0.173252, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:25.228 -07 000000576 INF: Z Motor: Settle wait time = 1449 ms, measure time = 106 ms (allowed 150 ms), total time = 1555 ms
17-03-17 18:07:25.228 -07 000000576 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:25.278 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:07:25.278 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:25.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:25.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:25.278 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:25.278 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:25.288 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:25.288 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:25.288 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:25.288 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:25.288 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:25.288 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:25.298 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:07:25.298 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:07:25.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:25.338 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:07:25.538 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:07:25.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:07:25.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:25.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 18:07:25.578 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:25.578 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:25.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:07:25.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:07:25.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:25.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:07:25.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:07:25.678 -07 000000480 INF: Autofocus start
17-03-17 18:07:25.678 -07 000000480 INF: MeasureProfile start
17-03-17 18:07:25.678 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:25.678 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:25.688 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:07:25.688 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:25.698 -07 000000480 INF: MeasureProfile done
17-03-17 18:07:25.698 -07 000000480 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:07:25.698 -07 000000480 INF: Autofocus finished
17-03-17 18:07:25.888 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:25.888 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 18:07:25.888 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173252435847104. ----------
17-03-17 18:07:25.898 -07 000000610 INF: Cycle	9	Tile	16	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:25.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36379, sync = True, waitForSettling = True)
17-03-17 18:07:25.898 -07 000000610 INF: Z Motor: Moving to -0.166532 mm, started at -0.173252 mm, distance = 6.72 um
17-03-17 18:07:25.898 -07 000000610 INF: FPGA: Xmit ZDACW 36379\n [Z Motor]
17-03-17 18:07:25.898 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:07:25.908 -07 000000610 INF: FPGA: 'ZDACW 36379' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:07:25.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:25.908 -07 000000576 INF: FPGA: Recv ZDACR 36379
17-03-17 18:07:25.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:25.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:26.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:26.068 -07 000000458 INF: FPGA: Recv ZSGSRD 35214
17-03-17 18:07:26.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:26.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:26.078 -07 000000458 INF: FPGA: Recv ZSGSRD 35213
17-03-17 18:07:26.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:26.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:26.088 -07 000000576 INF: FPGA: Recv ZSGSRD 35214
17-03-17 18:07:26.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:26.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:26.098 -07 000000480 INF: FPGA: Recv ZSGSRD 35218
17-03-17 18:07:26.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:26.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:26.108 -07 000000480 INF: FPGA: Recv ZSGSRD 35215
17-03-17 18:07:26.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:26.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:26.118 -07 000000480 INF: FPGA: Recv ZSGSRD 35212
17-03-17 18:07:26.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:26.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:26.128 -07 000000431 INF: FPGA: Recv ZSGSRD 35213
17-03-17 18:07:26.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:26.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:26.138 -07 000000431 INF: FPGA: Recv ZSGSRD 35217
17-03-17 18:07:26.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:26.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:26.148 -07 000000431 INF: FPGA: Recv ZSGSRD 35214
17-03-17 18:07:26.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:26.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:26.158 -07 000000626 INF: FPGA: Recv ZSGSRD 35211
17-03-17 18:07:26.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:26.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:26.168 -07 000000626 INF: FPGA: Recv ZPIEZORD 30938
17-03-17 18:07:26.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:26.178 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -9.4 V.
17-03-17 18:07:26.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35214 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35214 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35211 (-165.7 uncal um), Max = 35218 (-165.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:07:26.178 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35214, posNoise = 4, negNoise = 3
17-03-17 18:07:26.178 -07 000000610 INF: Z Motor: After move to -0.166532, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:26.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:07:26.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:26.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:26.178 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:26.178 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:26.178 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:26.178 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:26.178 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:26.178 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:26.178 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:26.178 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:26.178 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:07:26.178 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:26.188 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:07:26.188 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:26.188 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:07:26.188 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:26.198 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:07:26.198 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:07:26.198 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:07:26.198 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:07:26.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36556 150\n [Camera]
17-03-17 18:07:26.408 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:26.558 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:26.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:26.798 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:26.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:26.798 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:26.798 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:26.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:26.798 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:26.798 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:26.798 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) start.
17-03-17 18:07:26.798 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:26.798 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:07:26.988 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36556 776
17-03-17 18:07:27.138 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:27.198 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:07:27.198 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:07:27.198 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:27.198 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:27.198 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:07:27.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 500 ms.
17-03-17 18:07:27.308 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 18:07:27.308 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:27.308 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:27.318 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 18:07:27.328 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:27.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:27.328 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:27.328 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:27.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:27.328 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:27.338 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:27.338 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:07:27.338 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:27.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:07:27.518 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:07:27.518 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:27.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36556 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 18:07:27.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:07:27.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.166545558371105. ------
17-03-17 18:07:27.528 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:27.528 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17305 mm
17-03-17 18:07:27.528 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:27.528 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:27.528 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:07:27.528 -07 000000476 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 18:07:27.528 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37802, sync = True, waitForSettling = False)
17-03-17 18:07:27.528 -07 000000431 INF: Z Motor: Moving to -0.173046 mm, started at -0.166546 mm, distance = -6.50 um
17-03-17 18:07:27.538 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:27.538 -07 000000431 INF: FPGA: Xmit ZDACW 37802\n [Z Motor]
17-03-17 18:07:27.538 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 18:07:27.548 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:27.548 -07 000000431 INF: FPGA: 'ZDACW 37802' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:07:27.548 -07 000000547 INF: FPGA: Recv YRDPOS 148172
17-03-17 18:07:27.558 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:27.558 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:07:27.558 -07 000000476 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:27.558 -07 000000476 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:27.558 -07 000000476 INF: Y Motor: Moving 1349 steps-27
17-03-17 18:07:27.568 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:27.568 -07 000000623 INF: FPGA: Recv ZDACR 37802
17-03-17 18:07:27.578 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:07:27.578 -07 000000431 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:07:27.578 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:27.738 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:07:27.738 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:07:27.738 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:27.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:07:27.738 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:07:27.738 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:27.748 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:27.748 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 18:07:27.748 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:27.748 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 18:07:27.758 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:27.758 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:07:27.948 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:07:27.948 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:07:27.988 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:27.988 -07 000000431 INF: FPGA: Recv YRDPOS 149864
17-03-17 18:07:27.998 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:27.998 -07 000000476 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:27.998 -07 000000476 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 18:07:27.998 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 18:07:28.948 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:28.948 -07 000000462 INF: FPGA: Recv YRDPOS 149864
17-03-17 18:07:28.958 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:28.958 -07 000000476 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:28.968 -07 000000476 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:28.978 -07 000000476 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:07:28.978 -07 000000476 INF: Y Motor: Moved to 73.1758 after 1442 ms (table move)
17-03-17 18:07:28.978 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173046 mm (DAC = 37802)
17-03-17 18:07:28.978 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:28.978 -07 000000462 INF: FPGA: Recv ZSGSRD 36234
17-03-17 18:07:28.988 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:28.988 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:28.988 -07 000000409 INF: FPGA: Recv ZSGSRD 36222
17-03-17 18:07:28.998 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:28.998 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:28.998 -07 000000476 INF: FPGA: Recv ZSGSRD 36229
17-03-17 18:07:29.008 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.008 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.008 -07 000000459 INF: FPGA: Recv ZSGSRD 36226
17-03-17 18:07:29.018 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.018 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.018 -07 000000409 INF: FPGA: Recv ZSGSRD 36235
17-03-17 18:07:29.028 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.028 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.028 -07 000000458 INF: FPGA: Recv ZSGSRD 36226
17-03-17 18:07:29.038 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.038 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.038 -07 000000476 INF: FPGA: Recv ZSGSRD 36231
17-03-17 18:07:29.048 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.048 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.048 -07 000000458 INF: FPGA: Recv ZSGSRD 36222
17-03-17 18:07:29.058 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.058 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.058 -07 000000476 INF: FPGA: Recv ZSGSRD 36224
17-03-17 18:07:29.068 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.068 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.068 -07 000000480 INF: FPGA: Recv ZSGSRD 36222
17-03-17 18:07:29.078 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.078 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:29.078 -07 000000623 INF: FPGA: Recv ZPIEZORD 32315
17-03-17 18:07:29.088 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.088 -07 000000576 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.768 V. Piezo Error = -8.6 V.
17-03-17 18:07:29.088 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36227 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36226 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36222 (-172.1 uncal um), Max = 36235 (-172.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:07:29.088 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36227, posNoise = 8, negNoise = 5
17-03-17 18:07:29.088 -07 000000576 INF: Z Motor: After move to -0.173046, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:29.088 -07 000000576 INF: Z Motor: Settle wait time = 1444 ms, measure time = 108 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:07:29.088 -07 000000576 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:29.138 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 18:07:29.138 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:29.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:29.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:29.138 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:29.138 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:29.138 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:29.138 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:29.138 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:07:29.138 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:29.148 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:29.148 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:29.158 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:07:29.158 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:07:29.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:29.208 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:07:29.408 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:07:29.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:07:29.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:29.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 18:07:29.438 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:29.448 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:29.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:07:29.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:07:29.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:29.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:07:29.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:07:29.548 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:29.548 -07 000000476 INF: Autofocus start
17-03-17 18:07:29.548 -07 000000476 INF: MeasureProfile start
17-03-17 18:07:29.548 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:29.558 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:07:29.558 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:29.558 -07 000000476 INF: MeasureProfile done
17-03-17 18:07:29.558 -07 000000476 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:07:29.558 -07 000000476 INF: Autofocus finished
17-03-17 18:07:29.758 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:29.758 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:07:29.758 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173053285270709. ----------
17-03-17 18:07:29.758 -07 000000610 INF: Cycle	9	Tile	17	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:29.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36335, sync = True, waitForSettling = True)
17-03-17 18:07:29.768 -07 000000610 INF: Z Motor: Moving to -0.166331 mm, started at -0.173053 mm, distance = 6.72 um
17-03-17 18:07:29.768 -07 000000610 INF: FPGA: Xmit ZDACW 36335\n [Z Motor]
17-03-17 18:07:29.768 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:07:29.778 -07 000000610 INF: FPGA: 'ZDACW 36335' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:29.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:29.778 -07 000000459 INF: FPGA: Recv ZDACR 36335
17-03-17 18:07:29.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:29.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.938 -07 000000623 INF: FPGA: Recv ZSGSRD 35188
17-03-17 18:07:29.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:29.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.948 -07 000000623 INF: FPGA: Recv ZSGSRD 35183
17-03-17 18:07:29.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.958 -07 000000623 INF: FPGA: Recv ZSGSRD 35184
17-03-17 18:07:29.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.968 -07 000000623 INF: FPGA: Recv ZSGSRD 35183
17-03-17 18:07:29.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.978 -07 000000623 INF: FPGA: Recv ZSGSRD 35183
17-03-17 18:07:29.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.988 -07 000000623 INF: FPGA: Recv ZSGSRD 35181
17-03-17 18:07:29.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:29.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:29.998 -07 000000623 INF: FPGA: Recv ZSGSRD 35181
17-03-17 18:07:30.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:30.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:30.008 -07 000000623 INF: FPGA: Recv ZSGSRD 35185
17-03-17 18:07:30.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:30.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:30.018 -07 000000459 INF: FPGA: Recv ZSGSRD 35186
17-03-17 18:07:30.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:30.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:30.028 -07 000000459 INF: FPGA: Recv ZSGSRD 35175
17-03-17 18:07:30.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:30.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:30.038 -07 000000459 INF: FPGA: Recv ZPIEZORD 30916
17-03-17 18:07:30.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:30.048 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.544 V. Piezo Error = -9.4 V.
17-03-17 18:07:30.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35183 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35183 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35175 (-165.4 uncal um), Max = 35188 (-165.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:07:30.048 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35183, posNoise = 5, negNoise = 8
17-03-17 18:07:30.048 -07 000000610 INF: Z Motor: After move to -0.166331, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:30.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:07:30.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:30.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:30.048 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:30.048 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:30.048 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:30.048 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:30.048 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:30.048 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:30.048 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:30.048 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:30.048 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:07:30.048 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:30.058 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:07:30.058 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:30.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:07:30.058 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:30.068 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:07:30.068 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:07:30.068 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:07:30.068 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:07:30.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36512 150\n [Camera]
17-03-17 18:07:30.268 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:30.428 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.019446,
17-03-17 18:07:30.668 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:30.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:30.668 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:30.668 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:30.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:30.668 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:30.668 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:30.668 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:07:30.678 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:30.678 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 18:07:30.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36512 776
17-03-17 18:07:31.008 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:31.038 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:07:31.038 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:07:31.048 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:31.048 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:07:31.048 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:07:31.048 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:31.048 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:31.048 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:07:31.048 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:31.058 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:07:31.198 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:31.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:31.198 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:31.198 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:31.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:31.198 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:31.198 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:07:31.198 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:31.198 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:31.198 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:07:31.388 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:07:31.388 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:31.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36512 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:07:31.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:07:31.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166346407794711. ------
17-03-17 18:07:31.398 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:31.398 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17278 mm
17-03-17 18:07:31.398 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:31.398 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:31.398 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:07:31.398 -07 000000626 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 18:07:31.398 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37743, sync = True, waitForSettling = False)
17-03-17 18:07:31.398 -07 000000576 INF: Z Motor: Moving to -0.172776 mm, started at -0.166346 mm, distance = -6.43 um
17-03-17 18:07:31.408 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:07:31.408 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:31.408 -07 000000501 INF: FPGA: Recv YRDPOS 149864
17-03-17 18:07:31.418 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:07:31.418 -07 000000626 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:31.418 -07 000000626 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:31.418 -07 000000626 INF: Y Motor: Moving 1355 steps-34
17-03-17 18:07:31.418 -07 000000576 INF: FPGA: Xmit ZDACW 37743\n [Z Motor]
17-03-17 18:07:31.418 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:07:31.428 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:31.428 -07 000000576 INF: FPGA: 'ZDACW 37743' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:07:31.438 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:31.448 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:31.448 -07 000000501 INF: FPGA: Recv ZDACR 37743
17-03-17 18:07:31.458 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:07:31.458 -07 000000576 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:07:31.558 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:31.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:31.588 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:07:31.588 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:07:31.588 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:31.588 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:31.588 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 18:07:31.588 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:07:31.588 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:31.598 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:31.598 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:07:31.598 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:07:31.628 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:31.628 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-17 18:07:31.808 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 18:07:31.808 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:07:31.838 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:31.838 -07 000000482 INF: FPGA: Recv YRDPOS 151568
17-03-17 18:07:31.848 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:07:31.848 -07 000000626 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:31.848 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:07:31.848 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-17 18:07:32.798 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:32.798 -07 000000482 INF: FPGA: Recv YRDPOS 151568
17-03-17 18:07:32.808 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:32.808 -07 000000626 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:32.818 -07 000000626 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:32.818 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:07:32.818 -07 000000626 INF: Y Motor: Moved to 74.0078 after 1418 ms (table move)
17-03-17 18:07:32.818 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172776 mm (DAC = 37743)
17-03-17 18:07:32.818 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:32.828 -07 000000626 INF: FPGA: Recv ZSGSRD 36190
17-03-17 18:07:32.828 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:07:32.828 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:32.828 -07 000000623 INF: FPGA: Recv ZSGSRD 36192
17-03-17 18:07:32.838 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:32.838 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:32.838 -07 000000623 INF: FPGA: Recv ZSGSRD 36187
17-03-17 18:07:32.848 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:32.848 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:32.848 -07 000000476 INF: FPGA: Recv ZSGSRD 36184
17-03-17 18:07:32.858 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:32.858 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:32.858 -07 000000626 INF: FPGA: Recv ZSGSRD 36182
17-03-17 18:07:32.868 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:32.868 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:32.868 -07 000000482 INF: FPGA: Recv ZSGSRD 36192
17-03-17 18:07:32.878 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:32.878 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:32.878 -07 000000623 INF: FPGA: Recv ZSGSRD 36192
17-03-17 18:07:32.888 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:32.888 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:32.888 -07 000000626 INF: FPGA: Recv ZSGSRD 36192
17-03-17 18:07:32.898 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:32.898 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:32.898 -07 000000626 INF: FPGA: Recv ZSGSRD 36187
17-03-17 18:07:32.908 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:32.908 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:32.908 -07 000000478 INF: FPGA: Recv ZSGSRD 36182
17-03-17 18:07:32.918 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:32.918 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:32.918 -07 000000626 INF: FPGA: Recv ZPIEZORD 32275
17-03-17 18:07:32.928 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:32.948 -07 000000458 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.6 V.
17-03-17 18:07:32.948 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36188 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36188 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36182 (-171.9 uncal um), Max = 36192 (-171.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:07:32.948 -07 000000458 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36188, posNoise = 4, negNoise = 6
17-03-17 18:07:32.948 -07 000000458 INF: Z Motor: After move to -0.172776, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:32.948 -07 000000458 INF: Z Motor: Settle wait time = 1420 ms, measure time = 125 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:07:32.948 -07 000000458 INF: Z Motor: Waiting extra 25 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:32.978 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 18:07:32.978 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:32.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:32.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:32.978 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:32.978 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:32.978 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:32.978 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:32.978 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:32.978 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:32.988 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:07:32.988 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:32.998 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:07:32.998 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:07:32.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:33.048 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:07:33.248 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:07:33.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:07:33.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:33.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2504177024, 0x0, 559484976) start.
17-03-17 18:07:33.288 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:33.288 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:33.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:07:33.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2504177024, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:07:33.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:33.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:07:33.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:07:33.388 -07 000000547 INF: Autofocus start
17-03-17 18:07:33.388 -07 000000547 INF: MeasureProfile start
17-03-17 18:07:33.388 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:33.388 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:33.398 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:33.398 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:33.398 -07 000000547 INF: MeasureProfile done
17-03-17 18:07:33.398 -07 000000547 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:07:33.398 -07 000000547 INF: Autofocus finished
17-03-17 18:07:33.598 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:33.598 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:07:33.598 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.17280274099718. ----------
17-03-17 18:07:33.598 -07 000000610 INF: Cycle	9	Tile	18	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:33.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36240, sync = True, waitForSettling = True)
17-03-17 18:07:33.608 -07 000000610 INF: Z Motor: Moving to -0.165896 mm, started at -0.172803 mm, distance = 6.91 um
17-03-17 18:07:33.608 -07 000000610 INF: FPGA: Xmit ZDACW 36240\n [Z Motor]
17-03-17 18:07:33.608 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:07:33.618 -07 000000610 INF: FPGA: 'ZDACW 36240' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:33.618 -07 000000476 INF: FPGA: Recv ZDACR 36240
17-03-17 18:07:33.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:33.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:33.778 -07 000000476 INF: FPGA: Recv ZSGSRD 35118
17-03-17 18:07:33.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:33.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:33.788 -07 000000478 INF: FPGA: Recv ZSGSRD 35106
17-03-17 18:07:33.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:33.798 -07 000000623 INF: FPGA: Recv ZSGSRD 35113
17-03-17 18:07:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:33.808 -07 000000623 INF: FPGA: Recv ZSGSRD 35118
17-03-17 18:07:33.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:33.818 -07 000000623 INF: FPGA: Recv ZSGSRD 35117
17-03-17 18:07:33.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:33.828 -07 000000623 INF: FPGA: Recv ZSGSRD 35112
17-03-17 18:07:33.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:33.838 -07 000000623 INF: FPGA: Recv ZSGSRD 35112
17-03-17 18:07:33.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:33.848 -07 000000478 INF: FPGA: Recv ZSGSRD 35119
17-03-17 18:07:33.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:33.858 -07 000000623 INF: FPGA: Recv ZSGSRD 35116
17-03-17 18:07:33.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:33.868 -07 000000626 INF: FPGA: Recv ZSGSRD 35116
17-03-17 18:07:33.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:33.878 -07 000000626 INF: FPGA: Recv ZPIEZORD 30822
17-03-17 18:07:33.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:33.888 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -9.5 V.
17-03-17 18:07:33.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35115 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35116 (-165.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35106 (-165.0 uncal um), Max = 35119 (-165.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:07:33.888 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35115, posNoise = 4, negNoise = 9
17-03-17 18:07:33.888 -07 000000610 INF: Z Motor: After move to -0.165896, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:33.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:07:33.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:33.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:33.888 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:33.888 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:33.888 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:33.888 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:33.888 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:33.888 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:33.888 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:33.888 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:33.888 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:07:33.888 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:33.888 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:07:33.888 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:33.888 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:07:33.898 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:33.898 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:07:33.898 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:07:33.898 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:07:33.898 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:07:33.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36417 150\n [Camera]
17-03-17 18:07:34.108 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:34.498 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:34.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:34.498 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:34.498 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:34.498 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:07:34.498 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:34.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:34.498 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:34.608 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:34.608 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:07:34.688 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36417 776
17-03-17 18:07:34.838 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:34.888 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:07:34.888 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:07:34.888 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:34.898 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:34.898 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:07:35.008 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:07:35.008 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:07:35.008 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:35.008 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:07:35.018 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 18:07:35.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:07:35.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:07:35.028 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:35.038 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:07:35.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:07:35.038 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:35.038 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:35.038 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:07:35.038 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:35.038 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:07:35.218 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:07:35.218 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:35.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36417 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-17 18:07:35.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:07:35.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165909561369071. ------
17-03-17 18:07:35.228 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:35.228 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17224 mm
17-03-17 18:07:35.228 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:35.228 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:35.228 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:07:35.228 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37627, sync = True, waitForSettling = False)
17-03-17 18:07:35.228 -07 000000431 INF: Z Motor: Moving to -0.172245 mm, started at -0.165910 mm, distance = -6.34 um
17-03-17 18:07:35.228 -07 000000626 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 18:07:35.238 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:07:35.238 -07 000000431 INF: FPGA: Xmit ZDACW 37627\n [Z Motor]
17-03-17 18:07:35.238 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:07:35.248 -07 000000431 INF: FPGA: 'ZDACW 37627' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:35.248 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:35.248 -07 000000462 INF: FPGA: Recv YRDPOS 151569
17-03-17 18:07:35.258 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:35.258 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:07:35.258 -07 000000626 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:35.258 -07 000000626 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:35.258 -07 000000626 INF: Y Motor: Moving 1351 steps-30
17-03-17 18:07:35.268 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:35.268 -07 000000429 INF: FPGA: Recv ZDACR 37627
17-03-17 18:07:35.278 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:07:35.278 -07 000000431 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:07:35.278 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:35.428 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:07:35.428 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:07:35.428 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:35.428 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:35.428 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 18:07:35.428 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:07:35.428 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:35.438 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:07:35.438 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:35.438 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:07:35.458 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:35.458 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:07:35.648 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 18:07:35.648 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:07:35.668 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:35.678 -07 000000482 INF: FPGA: Recv YRDPOS 153256
17-03-17 18:07:35.678 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:07:35.678 -07 000000626 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:35.678 -07 000000626 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 18:07:35.678 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.133 mm/sec
17-03-17 18:07:35.788 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.989471,
17-03-17 18:07:36.558 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:36.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:36.628 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:36.628 -07 000000476 INF: FPGA: Recv YRDPOS 153256
17-03-17 18:07:36.638 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:36.638 -07 000000626 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:36.648 -07 000000626 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:36.648 -07 000000626 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:07:36.648 -07 000000626 INF: Y Motor: Moved to 74.8320 after 1415 ms (table move)
17-03-17 18:07:36.648 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172245 mm (DAC = 37627)
17-03-17 18:07:36.648 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:36.658 -07 000000626 INF: FPGA: Recv ZSGSRD 36101
17-03-17 18:07:36.658 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:07:36.658 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:36.658 -07 000000480 INF: FPGA: Recv ZSGSRD 36103
17-03-17 18:07:36.668 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:07:36.668 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:36.668 -07 000000431 INF: FPGA: Recv ZSGSRD 36096
17-03-17 18:07:36.678 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:36.678 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:36.678 -07 000000480 INF: FPGA: Recv ZSGSRD 36102
17-03-17 18:07:36.688 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:36.688 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:36.688 -07 000000626 INF: FPGA: Recv ZSGSRD 36096
17-03-17 18:07:36.698 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:36.698 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:36.698 -07 000000476 INF: FPGA: Recv ZSGSRD 36101
17-03-17 18:07:36.708 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:36.708 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:36.708 -07 000000626 INF: FPGA: Recv ZSGSRD 36105
17-03-17 18:07:36.718 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:36.718 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:36.718 -07 000000626 INF: FPGA: Recv ZSGSRD 36111
17-03-17 18:07:36.728 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:36.728 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:36.728 -07 000000409 INF: FPGA: Recv ZSGSRD 36094
17-03-17 18:07:36.738 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:36.738 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:36.738 -07 000000626 INF: FPGA: Recv ZSGSRD 36099
17-03-17 18:07:36.748 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:36.748 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:36.748 -07 000000429 INF: FPGA: Recv ZPIEZORD 32179
17-03-17 18:07:36.758 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:36.758 -07 000000576 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.742 V. Piezo Error = -8.7 V.
17-03-17 18:07:36.758 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36101 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36101 (-171.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36094 (-171.3 uncal um), Max = 36111 (-171.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:07:36.758 -07 000000576 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36101, posNoise = 10, negNoise = 7
17-03-17 18:07:36.758 -07 000000576 INF: Z Motor: After move to -0.172245, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:36.758 -07 000000576 INF: Z Motor: Settle wait time = 1419 ms, measure time = 102 ms (allowed 150 ms), total time = 1521 ms
17-03-17 18:07:36.758 -07 000000576 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:36.808 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 18:07:36.808 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:36.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:36.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:36.808 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:36.808 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:36.808 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:36.808 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:36.808 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:36.808 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:36.818 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:36.818 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:36.828 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:07:36.828 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:07:36.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:36.878 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:07:37.078 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:07:37.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:07:37.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:37.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 18:07:37.118 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:37.118 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:37.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:07:37.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:07:37.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:37.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:07:37.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:07:37.428 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:37.428 -07 000000431 INF: Autofocus start
17-03-17 18:07:37.428 -07 000000431 INF: MeasureProfile start
17-03-17 18:07:37.428 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:37.438 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:07:37.438 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:37.438 -07 000000431 INF: MeasureProfile done
17-03-17 18:07:37.438 -07 000000431 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:07:37.438 -07 000000431 INF: Autofocus finished
17-03-17 18:07:37.638 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:37.638 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:07:37.638 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172243834540847. ----------
17-03-17 18:07:37.638 -07 000000610 INF: Cycle	9	Tile	19	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:37.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36124, sync = True, waitForSettling = True)
17-03-17 18:07:37.648 -07 000000610 INF: Z Motor: Moving to -0.165365 mm, started at -0.172244 mm, distance = 6.88 um
17-03-17 18:07:37.648 -07 000000610 INF: FPGA: Xmit ZDACW 36124\n [Z Motor]
17-03-17 18:07:37.648 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:07:37.658 -07 000000610 INF: FPGA: 'ZDACW 36124' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:37.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:37.658 -07 000000482 INF: FPGA: Recv ZDACR 36124
17-03-17 18:07:37.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:37.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:37.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:37.818 -07 000000429 INF: FPGA: Recv ZSGSRD 35038
17-03-17 18:07:37.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:37.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:37.828 -07 000000429 INF: FPGA: Recv ZSGSRD 35029
17-03-17 18:07:37.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:37.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:37.838 -07 000000482 INF: FPGA: Recv ZSGSRD 35036
17-03-17 18:07:37.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:37.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:37.848 -07 000000429 INF: FPGA: Recv ZSGSRD 35032
17-03-17 18:07:37.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:37.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:37.858 -07 000000482 INF: FPGA: Recv ZSGSRD 35031
17-03-17 18:07:37.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:37.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:37.868 -07 000000429 INF: FPGA: Recv ZSGSRD 35031
17-03-17 18:07:37.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:37.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:37.878 -07 000000429 INF: FPGA: Recv ZSGSRD 35033
17-03-17 18:07:37.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:37.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:37.888 -07 000000482 INF: FPGA: Recv ZSGSRD 35034
17-03-17 18:07:37.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:37.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:37.898 -07 000000429 INF: FPGA: Recv ZSGSRD 35032
17-03-17 18:07:37.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:37.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:37.908 -07 000000482 INF: FPGA: Recv ZSGSRD 35031
17-03-17 18:07:37.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:37.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:37.918 -07 000000429 INF: FPGA: Recv ZPIEZORD 30742
17-03-17 18:07:37.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:37.928 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.512 V. Piezo Error = -9.4 V.
17-03-17 18:07:37.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35033 (-164.5 uncal um), Error = 0.8 uncal um, Median = 35032 (-164.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35029 (-164.5 uncal um), Max = 35038 (-164.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:07:37.928 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35033, posNoise = 5, negNoise = 4
17-03-17 18:07:37.928 -07 000000610 INF: Z Motor: After move to -0.165365, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:37.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:07:37.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:37.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:37.928 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:37.928 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:37.928 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:37.928 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:37.928 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:37.928 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:37.928 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:37.928 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:37.928 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:07:37.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:37.938 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:37.938 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:37.938 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:07:37.938 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:37.948 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:07:37.948 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:07:37.948 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:07:37.948 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:07:37.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 36300 150\n [Camera]
17-03-17 18:07:38.148 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:38.548 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:38.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:38.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:38.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:38.568 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:38.568 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:38.578 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:38.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 18:07:38.578 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:38.578 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:07:38.738 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36300 776
17-03-17 18:07:38.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:38.958 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:07:38.958 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:07:38.958 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:38.958 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:38.968 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:07:38.968 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:07:38.968 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:38.968 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:07:38.968 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:38.968 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:07:39.078 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:39.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:39.078 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:39.078 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:39.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:39.078 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:39.088 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:39.088 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) start.
17-03-17 18:07:39.088 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:39.088 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:07:39.268 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:07:39.268 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:39.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 36300 150' command took 2 ms to send, 1303 ms to get response, and 1314 ms overall
17-03-17 18:07:39.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:07:39.488 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:07:39.488 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:39.488 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 18:07:39.488 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:07:39.488 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:39.488 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:39.498 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:39.498 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-17 18:07:39.498 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:07:39.498 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 18:07:39.538 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:07:39.538 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:07:39.578 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:07:39.578 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:07:39.578 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:07:39.578 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-17 18:07:39.588 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:07:39.588 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:07:40.088 -07 000000623 INF: FPGA: Recv EMIN
17-03-17 18:07:40.088 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 1 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:07:40.088 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:07:40.088 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-17 18:07:40.098 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:40.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:07:40.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165382775973447. ------
17-03-17 18:07:40.098 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:40.098 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14000 mm
17-03-17 18:07:40.098 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:40.098 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:07:40.098 -07 000000459 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 18:07:40.098 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30583, sync = True, waitForSettling = False)
17-03-17 18:07:40.098 -07 000000576 INF: Z Motor: Moving to -0.140000 mm, started at -0.165383 mm, distance = 25.38 um
17-03-17 18:07:40.098 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:40.108 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:07:40.108 -07 000000576 INF: FPGA: Xmit ZDACW 30583\n [Z Motor]
17-03-17 18:07:40.108 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:07:40.118 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:40.118 -07 000000576 INF: FPGA: 'ZDACW 30583' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:07:40.118 -07 000000480 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:07:40.128 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:07:40.128 -07 000000459 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:40.128 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:40.128 -07 000000459 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:07:40.128 -07 000000459 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:07:40.138 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:40.138 -07 000000478 INF: FPGA: Recv ZDACR 30583
17-03-17 18:07:40.148 -07 000000459 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:07:40.148 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:07:40.148 -07 000000576 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:07:40.328 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:40.328 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:07:41.158 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.026244,
17-03-17 18:07:41.558 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:41.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:41.768 -07 000000626 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 18:07:41.768 -07 000000459 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall
17-03-17 18:07:41.768 -07 000000459 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 18:07:41.768 -07 000000459 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:07:41.768 -07 000000459 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.081 mm/sec
17-03-17 18:07:44.618 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:44.618 -07 000000576 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:07:44.628 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:44.628 -07 000000459 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:44.648 -07 000000459 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:44.648 -07 000000459 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 18:07:44.648 -07 000000459 INF: Y Motor: Moved to 59.9116 after 4547 ms
17-03-17 18:07:44.648 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140000 mm (DAC = 30583)
17-03-17 18:07:44.648 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:44.658 -07 000000459 INF: FPGA: Recv ZSGSRD 31080
17-03-17 18:07:44.668 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:44.668 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:44.668 -07 000000459 INF: FPGA: Recv ZSGSRD 31080
17-03-17 18:07:44.678 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:44.678 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:44.678 -07 000000576 INF: FPGA: Recv ZSGSRD 31078
17-03-17 18:07:44.688 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:44.688 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:44.688 -07 000000576 INF: FPGA: Recv ZSGSRD 31084
17-03-17 18:07:44.698 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:44.698 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:44.698 -07 000000480 INF: FPGA: Recv ZSGSRD 31086
17-03-17 18:07:44.708 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:44.708 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:44.708 -07 000000480 INF: FPGA: Recv ZSGSRD 31081
17-03-17 18:07:44.718 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:44.718 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:44.718 -07 000000480 INF: FPGA: Recv ZSGSRD 31082
17-03-17 18:07:44.728 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:44.728 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:44.728 -07 000000429 INF: FPGA: Recv ZSGSRD 31087
17-03-17 18:07:44.738 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:44.738 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:44.738 -07 000000480 INF: FPGA: Recv ZSGSRD 31085
17-03-17 18:07:44.748 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:44.748 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:44.748 -07 000000476 INF: FPGA: Recv ZSGSRD 31077
17-03-17 18:07:44.758 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:44.758 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:44.758 -07 000000429 INF: FPGA: Recv ZPIEZORD 26613
17-03-17 18:07:44.768 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:44.768 -07 000000409 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.667 V. Piezo Error = -9.8 V.
17-03-17 18:07:44.768 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31082 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31082 (-139.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31077 (-139.2 uncal um), Max = 31087 (-139.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:07:44.768 -07 000000409 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31082, posNoise = 5, negNoise = 5
17-03-17 18:07:44.768 -07 000000409 INF: Z Motor: After move to -0.140000, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:44.768 -07 000000409 INF: Z Motor: Settle wait time = 4551 ms, measure time = 111 ms (allowed 150 ms), total time = 4662 ms
17-03-17 18:07:44.768 -07 000000409 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:44.808 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4705 ms
17-03-17 18:07:44.808 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:44.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:44.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:44.808 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:44.808 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:44.808 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:44.808 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:44.808 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:44.808 -07 000000409 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:07:44.838 -07 000000409 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 18:07:44.838 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:44.838 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:07:44.838 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:44.858 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:07:44.858 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 18:07:44.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:44.898 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:07:45.098 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:07:45.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:07:45.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:45.208 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:45.208 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:45.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) start.
17-03-17 18:07:45.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 344 ms to get response, and 350 ms overall
17-03-17 18:07:45.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602438304, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:07:45.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:45.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:07:45.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 233 ms.
17-03-17 18:07:45.408 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:45.408 -07 000000482 INF: Image SNR check: start
17-03-17 18:07:45.408 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:45.418 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:45.418 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:45.418 -07 000000482 INF: Image SNR check: pass  [peak (Max-Min)=78.10]
17-03-17 18:07:45.418 -07 000000482 INF: Autofocus start
17-03-17 18:07:45.418 -07 000000482 INF: MeasureProfile start
17-03-17 18:07:45.438 -07 000000482 INF: MeasureProfile done
17-03-17 18:07:45.438 -07 000000482 INF: X=23  Z correction [um]=0.08669062
17-03-17 18:07:45.438 -07 000000482 INF: Autofocus finished
17-03-17 18:07:45.618 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:45.618 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:07:45.618 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.140000713801349. ----------
17-03-17 18:07:45.618 -07 000000610 INF: Cycle	9	Tile	1	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:45.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29114, sync = True, waitForSettling = True)
17-03-17 18:07:45.628 -07 000000610 INF: Z Motor: Moving to -0.133275 mm, started at -0.140001 mm, distance = 6.73 um
17-03-17 18:07:45.628 -07 000000610 INF: FPGA: Xmit ZDACW 29114\n [Z Motor]
17-03-17 18:07:45.628 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:07:45.638 -07 000000610 INF: FPGA: 'ZDACW 29114' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:45.638 -07 000000480 INF: FPGA: Recv ZDACR 29114
17-03-17 18:07:45.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:45.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:45.798 -07 000000623 INF: FPGA: Recv ZSGSRD 30038
17-03-17 18:07:45.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:45.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:45.808 -07 000000480 INF: FPGA: Recv ZSGSRD 30041
17-03-17 18:07:45.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:45.818 -07 000000458 INF: FPGA: Recv ZSGSRD 30039
17-03-17 18:07:45.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:45.828 -07 000000429 INF: FPGA: Recv ZSGSRD 30029
17-03-17 18:07:45.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:45.838 -07 000000623 INF: FPGA: Recv ZSGSRD 30035
17-03-17 18:07:45.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:45.848 -07 000000476 INF: FPGA: Recv ZSGSRD 30041
17-03-17 18:07:45.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:45.858 -07 000000458 INF: FPGA: Recv ZSGSRD 30033
17-03-17 18:07:45.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:45.868 -07 000000626 INF: FPGA: Recv ZSGSRD 30035
17-03-17 18:07:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:45.878 -07 000000429 INF: FPGA: Recv ZSGSRD 30033
17-03-17 18:07:45.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:45.888 -07 000000626 INF: FPGA: Recv ZSGSRD 30038
17-03-17 18:07:45.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:45.898 -07 000000476 INF: FPGA: Recv ZPIEZORD 25473
17-03-17 18:07:45.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:45.908 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -10.0 V.
17-03-17 18:07:45.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30036 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30036 (-132.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30029 (-132.4 uncal um), Max = 30041 (-132.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:07:45.908 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30036, posNoise = 5, negNoise = 7
17-03-17 18:07:45.908 -07 000000610 INF: Z Motor: After move to -0.133275, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:45.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:07:45.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:45.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:45.908 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:45.908 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:45.908 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:45.908 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:45.908 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:45.908 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:45.908 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:45.908 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:45.908 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:07:45.908 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:07:45.908 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:45.908 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:45.928 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:07:45.928 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:07:45.928 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 18:07:45.928 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:45.938 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:07:45.938 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:45.948 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:07:45.948 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 18:07:45.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29291 150\n [Camera]
17-03-17 18:07:46.148 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:46.528 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.000345,
17-03-17 18:07:46.538 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:46.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:46.538 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:46.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:46.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:46.548 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:46.548 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:46.548 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 18:07:46.548 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:46.548 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:07:46.558 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:46.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:46.738 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29291 776
17-03-17 18:07:46.888 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:46.938 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:07:46.938 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:07:46.938 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:46.938 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:07:46.938 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:07:46.938 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:46.938 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:46.938 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:07:46.938 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:46.948 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:07:47.068 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:47.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:47.078 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:47.078 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:47.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:47.078 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:47.078 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:47.078 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 18:07:47.078 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:47.078 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 18:07:47.268 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:07:47.268 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:47.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29291 150' command took 2 ms to send, 1301 ms to get response, and 1314 ms overall
17-03-17 18:07:47.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:07:47.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133280987901067. ------
17-03-17 18:07:47.268 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:47.268 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13978 mm
17-03-17 18:07:47.268 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:47.268 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:07:47.268 -07 000000429 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:07:47.268 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30535, sync = True, waitForSettling = False)
17-03-17 18:07:47.268 -07 000000623 INF: Z Motor: Moving to -0.139780 mm, started at -0.133281 mm, distance = -6.50 um
17-03-17 18:07:47.268 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:47.278 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:07:47.278 -07 000000623 INF: FPGA: Xmit ZDACW 30535\n [Z Motor]
17-03-17 18:07:47.278 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:07:47.288 -07 000000623 INF: FPGA: 'ZDACW 30535' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:47.288 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:47.288 -07 000000480 INF: FPGA: Recv ZDACR 30535
17-03-17 18:07:47.298 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:47.298 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:47.298 -07 000000623 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 18:07:47.298 -07 000000626 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:07:47.308 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:07:47.308 -07 000000429 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:47.308 -07 000000429 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:47.308 -07 000000429 INF: Y Motor: Moving 1330 steps2
17-03-17 18:07:47.308 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:47.318 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:47.478 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:07:47.478 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:07:47.478 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:47.478 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:07:47.478 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:07:47.478 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:47.478 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:47.478 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:47.478 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:07:47.488 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:07:47.508 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:47.508 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 233 ms overall
17-03-17 18:07:47.698 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 18:07:47.698 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 391 ms overall
17-03-17 18:07:47.718 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:47.728 -07 000000623 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:07:47.728 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:07:47.728 -07 000000429 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:47.728 -07 000000429 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:07:47.728 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.831 mm, average velocity = 2.125 mm/sec
17-03-17 18:07:48.678 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:48.678 -07 000000478 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:07:48.688 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:48.688 -07 000000429 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:48.708 -07 000000429 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:48.708 -07 000000429 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:07:48.708 -07 000000429 INF: Y Motor: Moved to 60.7334 after 1431 ms (table move)
17-03-17 18:07:48.708 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139780 mm (DAC = 30535)
17-03-17 18:07:48.708 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:48.708 -07 000000458 INF: FPGA: Recv ZSGSRD 31051
17-03-17 18:07:48.718 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:07:48.718 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:48.718 -07 000000458 INF: FPGA: Recv ZSGSRD 31045
17-03-17 18:07:48.728 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:48.728 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:48.728 -07 000000482 INF: FPGA: Recv ZSGSRD 31049
17-03-17 18:07:48.738 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:48.738 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:48.738 -07 000000458 INF: FPGA: Recv ZSGSRD 31042
17-03-17 18:07:48.748 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:48.748 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:48.748 -07 000000482 INF: FPGA: Recv ZSGSRD 31050
17-03-17 18:07:48.758 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:48.758 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:48.758 -07 000000482 INF: FPGA: Recv ZSGSRD 31051
17-03-17 18:07:48.768 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:48.768 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:48.768 -07 000000482 INF: FPGA: Recv ZSGSRD 31054
17-03-17 18:07:48.778 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:48.778 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:48.778 -07 000000458 INF: FPGA: Recv ZSGSRD 31052
17-03-17 18:07:48.788 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:48.788 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:48.788 -07 000000482 INF: FPGA: Recv ZSGSRD 31043
17-03-17 18:07:48.798 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:48.798 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:48.798 -07 000000547 INF: FPGA: Recv ZSGSRD 31048
17-03-17 18:07:48.808 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:48.808 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:48.808 -07 000000547 INF: FPGA: Recv ZPIEZORD 26892
17-03-17 18:07:48.818 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:48.818 -07 000000476 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.659 V. Piezo Error = -9.1 V.
17-03-17 18:07:48.818 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31048 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31050 (-139.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31042 (-138.9 uncal um), Max = 31054 (-139.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:07:48.818 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31048, posNoise = 6, negNoise = 6
17-03-17 18:07:48.818 -07 000000476 INF: Z Motor: After move to -0.139780, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:48.818 -07 000000476 INF: Z Motor: Settle wait time = 1435 ms, measure time = 106 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:07:48.818 -07 000000476 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:48.868 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:07:48.868 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:48.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:48.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:48.868 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:48.868 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:48.868 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:48.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:48.878 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:48.878 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:48.878 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:48.878 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:48.888 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:07:48.888 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:07:48.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:48.938 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 18:07:49.138 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 18:07:49.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 18:07:49.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:49.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-17 18:07:49.168 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:49.168 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:49.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:07:49.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:07:49.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:49.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:07:49.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:07:49.368 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:49.368 -07 000000501 INF: Autofocus start
17-03-17 18:07:49.368 -07 000000501 INF: MeasureProfile start
17-03-17 18:07:49.368 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:49.378 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:49.378 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:49.378 -07 000000501 INF: MeasureProfile done
17-03-17 18:07:49.378 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:07:49.378 -07 000000501 INF: Autofocus finished
17-03-17 18:07:49.578 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:49.578 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:07:49.578 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139782290588529. ----------
17-03-17 18:07:49.578 -07 000000610 INF: Cycle	9	Tile	2	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:49.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29042, sync = True, waitForSettling = True)
17-03-17 18:07:49.588 -07 000000610 INF: Z Motor: Moving to -0.132946 mm, started at -0.139782 mm, distance = 6.84 um
17-03-17 18:07:49.588 -07 000000610 INF: FPGA: Xmit ZDACW 29042\n [Z Motor]
17-03-17 18:07:49.588 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:07:49.598 -07 000000610 INF: FPGA: 'ZDACW 29042' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:49.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:49.598 -07 000000429 INF: FPGA: Recv ZDACR 29042
17-03-17 18:07:49.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:49.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:49.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:49.758 -07 000000476 INF: FPGA: Recv ZSGSRD 29986
17-03-17 18:07:49.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:49.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:49.768 -07 000000429 INF: FPGA: Recv ZSGSRD 29986
17-03-17 18:07:49.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:49.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:49.778 -07 000000547 INF: FPGA: Recv ZSGSRD 29988
17-03-17 18:07:49.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:49.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:49.788 -07 000000547 INF: FPGA: Recv ZSGSRD 29986
17-03-17 18:07:49.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:49.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:49.798 -07 000000547 INF: FPGA: Recv ZSGSRD 29982
17-03-17 18:07:49.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:49.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:49.808 -07 000000547 INF: FPGA: Recv ZSGSRD 29986
17-03-17 18:07:49.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:49.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:49.818 -07 000000482 INF: FPGA: Recv ZSGSRD 29985
17-03-17 18:07:49.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:49.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:49.828 -07 000000501 INF: FPGA: Recv ZSGSRD 29988
17-03-17 18:07:49.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:49.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:49.838 -07 000000458 INF: FPGA: Recv ZSGSRD 29986
17-03-17 18:07:49.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:49.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:49.848 -07 000000623 INF: FPGA: Recv ZSGSRD 29983
17-03-17 18:07:49.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:49.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:49.858 -07 000000429 INF: FPGA: Recv ZPIEZORD 25529
17-03-17 18:07:49.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:49.868 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.432 V. Piezo Error = -9.8 V.
17-03-17 18:07:49.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29986 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29986 (-132.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29982 (-132.1 uncal um), Max = 29988 (-132.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:07:49.868 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29986, posNoise = 2, negNoise = 4
17-03-17 18:07:49.868 -07 000000610 INF: Z Motor: After move to -0.132946, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:49.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:07:49.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:49.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:49.868 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:49.868 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:49.878 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:49.878 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:49.878 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:49.878 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:49.878 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:07:49.878 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:49.878 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:49.878 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:49.878 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:07:49.878 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:49.878 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:49.878 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:49.888 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:07:49.888 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:07:49.888 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:07:49.888 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:07:49.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29219 150\n [Camera]
17-03-17 18:07:50.088 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:50.478 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:07:50.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:07:50.488 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:50.488 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:07:50.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:07:50.488 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:50.488 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:50.488 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:07:50.488 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:50.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2612709080, 0x0, 391868352) start.
17-03-17 18:07:50.678 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29219 776
17-03-17 18:07:50.828 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:50.878 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:07:50.878 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:07:50.878 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:50.878 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2612709080, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:07:50.878 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:07:50.878 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:50.888 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:50.888 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:50.888 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:07:50.898 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:07:51.008 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:51.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:51.018 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:51.118 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:51.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:51.118 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:51.128 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:51.128 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:51.128 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:07:51.128 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:07:51.208 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:07:51.208 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:51.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29219 150' command took 2 ms to send, 1311 ms to get response, and 1314 ms overall
17-03-17 18:07:51.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:07:51.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.132959777293979. ------
17-03-17 18:07:51.208 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:51.208 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13960 mm
17-03-17 18:07:51.208 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:51.208 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:07:51.208 -07 000000478 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 18:07:51.208 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30495, sync = True, waitForSettling = False)
17-03-17 18:07:51.208 -07 000000626 INF: Z Motor: Moving to -0.139597 mm, started at -0.132960 mm, distance = -6.64 um
17-03-17 18:07:51.208 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:51.218 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:07:51.218 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:51.218 -07 000000458 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:07:51.228 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:51.228 -07 000000478 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:51.228 -07 000000626 INF: FPGA: Xmit ZDACW 30495\n [Z Motor]
17-03-17 18:07:51.228 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 18:07:51.228 -07 000000478 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:51.228 -07 000000478 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:07:51.238 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:51.238 -07 000000626 INF: FPGA: 'ZDACW 30495' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:07:51.248 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:51.258 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:51.258 -07 000000458 INF: FPGA: Recv ZDACR 30495
17-03-17 18:07:51.268 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:07:51.268 -07 000000626 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:07:51.438 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:51.438 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:07:51.508 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:07:51.508 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:07:51.508 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:51.518 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:07:51.518 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:07:51.518 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:51.518 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:51.518 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:51.518 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 18:07:51.528 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:07:51.558 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:51.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:51.618 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:07:51.618 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:07:51.658 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:51.658 -07 000000476 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:07:51.668 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:51.668 -07 000000478 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:51.668 -07 000000478 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:07:51.668 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-17 18:07:51.898 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.997626,
17-03-17 18:07:52.618 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:52.618 -07 000000480 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:07:52.628 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:52.628 -07 000000478 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:52.648 -07 000000478 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:52.648 -07 000000478 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:07:52.648 -07 000000478 INF: Y Motor: Moved to 61.5645 after 1431 ms (table move)
17-03-17 18:07:52.648 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139597 mm (DAC = 30495)
17-03-17 18:07:52.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:52.648 -07 000000409 INF: FPGA: Recv ZSGSRD 31017
17-03-17 18:07:52.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:07:52.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:52.658 -07 000000626 INF: FPGA: Recv ZSGSRD 31011
17-03-17 18:07:52.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:52.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:52.668 -07 000000458 INF: FPGA: Recv ZSGSRD 31018
17-03-17 18:07:52.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:52.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:52.678 -07 000000547 INF: FPGA: Recv ZSGSRD 31023
17-03-17 18:07:52.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:52.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:52.688 -07 000000409 INF: FPGA: Recv ZSGSRD 31025
17-03-17 18:07:52.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:52.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:52.698 -07 000000626 INF: FPGA: Recv ZSGSRD 31024
17-03-17 18:07:52.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:52.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:52.708 -07 000000458 INF: FPGA: Recv ZSGSRD 31020
17-03-17 18:07:52.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:52.718 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:52.718 -07 000000476 INF: FPGA: Recv ZSGSRD 31021
17-03-17 18:07:52.728 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:52.728 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:52.728 -07 000000458 INF: FPGA: Recv ZSGSRD 31016
17-03-17 18:07:52.738 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:52.738 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:52.738 -07 000000409 INF: FPGA: Recv ZSGSRD 31015
17-03-17 18:07:52.748 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:52.748 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:52.748 -07 000000458 INF: FPGA: Recv ZPIEZORD 26863
17-03-17 18:07:52.758 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:52.758 -07 000000429 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.653 V. Piezo Error = -9.1 V.
17-03-17 18:07:52.758 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31019 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31019 (-138.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31011 (-138.7 uncal um), Max = 31025 (-138.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:07:52.758 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31019, posNoise = 6, negNoise = 8
17-03-17 18:07:52.758 -07 000000429 INF: Z Motor: After move to -0.139597, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:52.758 -07 000000429 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:07:52.758 -07 000000429 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:52.808 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:07:52.808 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:52.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:52.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:52.808 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:52.808 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:52.808 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:52.808 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:52.808 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:52.808 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:52.818 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:52.818 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:52.828 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:07:52.828 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:07:52.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:52.878 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:07:53.078 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:07:53.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:07:53.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:53.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 18:07:53.118 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:53.118 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:53.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 18:07:53.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:07:53.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:53.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:07:53.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:07:53.218 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:53.218 -07 000000547 INF: Autofocus start
17-03-17 18:07:53.218 -07 000000547 INF: MeasureProfile start
17-03-17 18:07:53.218 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:53.228 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:07:53.228 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:53.228 -07 000000547 INF: MeasureProfile done
17-03-17 18:07:53.228 -07 000000547 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:07:53.228 -07 000000547 INF: Autofocus finished
17-03-17 18:07:53.428 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:53.428 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:07:53.428 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139595988436418. ----------
17-03-17 18:07:53.428 -07 000000610 INF: Cycle	9	Tile	3	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:53.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29019, sync = True, waitForSettling = True)
17-03-17 18:07:53.438 -07 000000610 INF: Z Motor: Moving to -0.132840 mm, started at -0.139596 mm, distance = 6.76 um
17-03-17 18:07:53.438 -07 000000610 INF: FPGA: Xmit ZDACW 29019\n [Z Motor]
17-03-17 18:07:53.438 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:07:53.448 -07 000000610 INF: FPGA: 'ZDACW 29019' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:07:53.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:53.448 -07 000000459 INF: FPGA: Recv ZDACR 29019
17-03-17 18:07:53.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:53.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:53.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:53.608 -07 000000478 INF: FPGA: Recv ZSGSRD 29975
17-03-17 18:07:53.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:53.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:53.618 -07 000000459 INF: FPGA: Recv ZSGSRD 29969
17-03-17 18:07:53.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:53.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:53.628 -07 000000547 INF: FPGA: Recv ZSGSRD 29967
17-03-17 18:07:53.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:53.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:53.638 -07 000000480 INF: FPGA: Recv ZSGSRD 29966
17-03-17 18:07:53.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:53.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:53.648 -07 000000476 INF: FPGA: Recv ZSGSRD 29967
17-03-17 18:07:53.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:53.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:53.658 -07 000000409 INF: FPGA: Recv ZSGSRD 29975
17-03-17 18:07:53.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:53.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:53.668 -07 000000458 INF: FPGA: Recv ZSGSRD 29965
17-03-17 18:07:53.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:53.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:53.678 -07 000000459 INF: FPGA: Recv ZSGSRD 29969
17-03-17 18:07:53.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:53.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:53.688 -07 000000547 INF: FPGA: Recv ZSGSRD 29971
17-03-17 18:07:53.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:53.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:53.698 -07 000000429 INF: FPGA: Recv ZSGSRD 29967
17-03-17 18:07:53.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:53.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:53.708 -07 000000626 INF: FPGA: Recv ZPIEZORD 25495
17-03-17 18:07:53.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:53.718 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.428 V. Piezo Error = -9.8 V.
17-03-17 18:07:53.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29969 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29968 (-132.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29965 (-132.0 uncal um), Max = 29975 (-132.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:07:53.718 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29969, posNoise = 6, negNoise = 4
17-03-17 18:07:53.718 -07 000000610 INF: Z Motor: After move to -0.132840, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:53.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:07:53.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:53.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:53.718 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:53.718 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:53.718 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:53.718 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:53.718 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:53.718 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:53.718 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:53.718 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:53.718 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:07:53.718 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:53.728 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:07:53.728 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:53.728 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:07:53.728 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:53.738 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:07:53.738 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:07:53.738 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:07:53.738 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:07:53.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29196 150\n [Camera]
17-03-17 18:07:53.938 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:54.338 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:07:54.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:07:54.348 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:07:54.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:07:54.348 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:54.348 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:54.458 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:54.458 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2581692120, 0x0, 391868352) start.
17-03-17 18:07:54.458 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:54.458 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:07:54.528 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29196 776
17-03-17 18:07:54.678 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:54.838 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:07:54.838 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:07:54.838 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:54.848 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2581692120, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:07:54.848 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:07:54.848 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:54.848 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:54.848 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:07:54.848 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 18:07:54.848 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 18:07:54.868 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:54.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:54.868 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:54.868 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:54.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:54.868 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:54.878 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:54.878 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:07:54.878 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:54.878 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2482896656, 0x0, 418435064) start.
17-03-17 18:07:55.058 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:07:55.058 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:55.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29196 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 18:07:55.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:07:55.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132850565687569. ------
17-03-17 18:07:55.058 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:55.058 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13918 mm
17-03-17 18:07:55.058 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:55.068 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:55.068 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:07:55.068 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:55.068 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30404, sync = True, waitForSettling = False)
17-03-17 18:07:55.068 -07 000000462 INF: Z Motor: Moving to -0.139181 mm, started at -0.132851 mm, distance = -6.33 um
17-03-17 18:07:55.068 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:07:55.068 -07 000000459 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:07:55.078 -07 000000462 INF: FPGA: Xmit ZDACW 30404\n [Z Motor]
17-03-17 18:07:55.078 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:07:55.088 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:55.088 -07 000000462 INF: FPGA: 'ZDACW 30404' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:07:55.088 -07 000000429 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:07:55.098 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:55.098 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:07:55.098 -07 000000459 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:55.098 -07 000000459 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:55.098 -07 000000459 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:07:55.098 -07 000000569 INF: FPGA: Recv ZDACR 30404
17-03-17 18:07:55.108 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:07:55.108 -07 000000462 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 18:07:55.108 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:55.258 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:07:55.258 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:07:55.258 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:55.258 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2482896656, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:07:55.258 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:07:55.258 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:55.258 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:07:55.258 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:07:55.258 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:07:55.268 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:55.268 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 18:07:55.268 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:07:55.488 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:07:55.488 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 18:07:55.518 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:55.518 -07 000000476 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:07:55.528 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:55.528 -07 000000459 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:55.528 -07 000000459 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:07:55.528 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.838 mm, average velocity = 2.155 mm/sec
17-03-17 18:07:56.478 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:56.478 -07 000000475 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:07:56.488 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:56.488 -07 000000459 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:56.498 -07 000000459 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:07:56.498 -07 000000459 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:07:56.498 -07 000000459 INF: Y Motor: Moved to 62.3960 after 1434 ms (table move)
17-03-17 18:07:56.508 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139181 mm (DAC = 30404)
17-03-17 18:07:56.508 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:56.508 -07 000000569 INF: FPGA: Recv ZSGSRD 30961
17-03-17 18:07:56.518 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:07:56.518 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:56.518 -07 000000424 INF: FPGA: Recv ZSGSRD 30960
17-03-17 18:07:56.528 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:56.528 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:56.528 -07 000000424 INF: FPGA: Recv ZSGSRD 30962
17-03-17 18:07:56.538 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:56.538 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:56.538 -07 000000476 INF: FPGA: Recv ZSGSRD 30957
17-03-17 18:07:56.548 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:56.548 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:56.548 -07 000000569 INF: FPGA: Recv ZSGSRD 30953
17-03-17 18:07:56.558 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:56.558 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:56.558 -07 000000569 INF: FPGA: Recv ZSGSRD 30961
17-03-17 18:07:56.558 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:07:56.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:07:56.568 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:56.568 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:56.568 -07 000000475 INF: FPGA: Recv ZSGSRD 30952
17-03-17 18:07:56.578 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:56.578 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:56.578 -07 000000459 INF: FPGA: Recv ZSGSRD 30947
17-03-17 18:07:56.588 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:56.588 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:56.588 -07 000000459 INF: FPGA: Recv ZSGSRD 30953
17-03-17 18:07:56.598 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:56.598 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:56.598 -07 000000569 INF: FPGA: Recv ZSGSRD 30942
17-03-17 18:07:56.608 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:56.608 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:56.608 -07 000000459 INF: FPGA: Recv ZPIEZORD 26809
17-03-17 18:07:56.618 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:56.618 -07 000000458 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.639 V. Piezo Error = -9.1 V.
17-03-17 18:07:56.618 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30955 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30955 (-138.4 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30942 (-138.3 uncal um), Max = 30962 (-138.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 18:07:56.618 -07 000000458 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30955, posNoise = 7, negNoise = 13
17-03-17 18:07:56.618 -07 000000458 INF: Z Motor: After move to -0.139181, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:56.618 -07 000000458 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms
17-03-17 18:07:56.618 -07 000000458 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:07:56.668 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 18:07:56.668 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:07:56.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:56.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:56.668 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:56.668 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:56.668 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:07:56.668 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:56.668 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:56.668 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:07:56.678 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:56.678 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:07:56.688 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:07:56.688 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:07:56.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:07:56.738 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:07:56.938 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:07:56.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:07:56.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:07:56.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 18:07:56.978 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:07:56.978 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 18:07:56.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:07:57.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:07:57.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:57.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:07:57.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:07:57.078 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:57.078 -07 000000476 INF: Autofocus start
17-03-17 18:07:57.078 -07 000000476 INF: MeasureProfile start
17-03-17 18:07:57.078 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:57.088 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:07:57.088 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:07:57.088 -07 000000476 INF: MeasureProfile done
17-03-17 18:07:57.088 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:07:57.088 -07 000000476 INF: Autofocus finished
17-03-17 18:07:57.268 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.983999,
17-03-17 18:07:57.288 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:07:57.288 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:07:57.298 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139184838859345. ----------
17-03-17 18:07:57.298 -07 000000610 INF: Cycle	9	Tile	4	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:07:57.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28912, sync = True, waitForSettling = True)
17-03-17 18:07:57.298 -07 000000610 INF: Z Motor: Moving to -0.132351 mm, started at -0.139185 mm, distance = 6.83 um
17-03-17 18:07:57.318 -07 000000610 INF: FPGA: Xmit ZDACW 28912\n [Z Motor]
17-03-17 18:07:57.318 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:07:57.328 -07 000000610 INF: FPGA: 'ZDACW 28912' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:07:57.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:57.328 -07 000000459 INF: FPGA: Recv ZDACR 28912
17-03-17 18:07:57.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:57.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:07:57.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:57.488 -07 000000478 INF: FPGA: Recv ZSGSRD 29896
17-03-17 18:07:57.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:57.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:57.498 -07 000000569 INF: FPGA: Recv ZSGSRD 29895
17-03-17 18:07:57.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:57.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:57.508 -07 000000478 INF: FPGA: Recv ZSGSRD 29890
17-03-17 18:07:57.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:57.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:57.518 -07 000000476 INF: FPGA: Recv ZSGSRD 29889
17-03-17 18:07:57.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:57.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:57.528 -07 000000475 INF: FPGA: Recv ZSGSRD 29893
17-03-17 18:07:57.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:57.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:57.538 -07 000000569 INF: FPGA: Recv ZSGSRD 29899
17-03-17 18:07:57.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:57.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:57.548 -07 000000475 INF: FPGA: Recv ZSGSRD 29896
17-03-17 18:07:57.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:57.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:57.558 -07 000000476 INF: FPGA: Recv ZSGSRD 29889
17-03-17 18:07:57.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:57.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:57.568 -07 000000459 INF: FPGA: Recv ZSGSRD 29891
17-03-17 18:07:57.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:57.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:07:57.588 -07 000000458 INF: FPGA: Recv ZSGSRD 29890
17-03-17 18:07:57.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:07:57.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:07:57.598 -07 000000478 INF: FPGA: Recv ZPIEZORD 25399
17-03-17 18:07:57.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:07:57.608 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.9 V.
17-03-17 18:07:57.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29893 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29892 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29889 (-131.6 uncal um), Max = 29899 (-131.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:07:57.608 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29893, posNoise = 6, negNoise = 4
17-03-17 18:07:57.608 -07 000000610 INF: Z Motor: After move to -0.132351, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:07:57.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-17 18:07:57.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:07:57.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:07:57.608 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:07:57.608 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:07:57.608 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:07:57.608 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:07:57.608 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:07:57.608 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:07:57.608 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:07:57.608 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:07:57.608 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:07:57.608 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:07:57.618 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:07:57.618 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:07:57.618 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:07:57.618 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:07:57.628 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:07:57.628 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:07:57.628 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:07:57.628 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:07:57.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29088 150\n [Camera]
17-03-17 18:07:57.848 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:07:58.238 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:07:58.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:07:58.238 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:07:58.238 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:58.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:07:58.238 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:58.238 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:58.238 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:07:58.248 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:58.248 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) start.
17-03-17 18:07:58.428 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29088 776
17-03-17 18:07:58.578 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:07:58.618 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2617114384, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:07:58.618 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:07:58.618 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:58.618 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:07:58.618 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:07:58.618 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:58.618 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:58.618 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:07:58.628 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:58.628 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:07:58.768 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:07:58.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:07:58.768 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:07:58.768 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:07:58.768 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:07:58.768 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:07:58.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:07:58.768 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:07:58.768 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:07:58.768 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:07:58.958 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:07:58.958 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:07:58.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29088 150' command took 2 ms to send, 1304 ms to get response, and 1324 ms overall
17-03-17 18:07:58.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:07:58.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132362325564795. ------
17-03-17 18:07:58.958 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:07:58.958 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13907 mm
17-03-17 18:07:58.968 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:07:58.968 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:07:58.968 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:07:58.968 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:07:58.968 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:07:58.968 -07 000000623 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 18:07:58.968 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30380, sync = True, waitForSettling = False)
17-03-17 18:07:58.968 -07 000000569 INF: Z Motor: Moving to -0.139071 mm, started at -0.132362 mm, distance = -6.71 um
17-03-17 18:07:58.978 -07 000000569 INF: FPGA: Xmit ZDACW 30380\n [Z Motor]
17-03-17 18:07:58.978 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:07:58.988 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:58.988 -07 000000569 INF: FPGA: 'ZDACW 30380' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:07:58.988 -07 000000478 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:07:58.998 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 18:07:58.998 -07 000000623 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:58.998 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:07:58.998 -07 000000623 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:07:58.998 -07 000000623 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:07:58.998 -07 000000626 INF: FPGA: Recv ZDACR 30380
17-03-17 18:07:59.008 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:07:59.008 -07 000000569 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 18:07:59.008 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:07:59.148 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:07:59.148 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:07:59.148 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:59.148 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:07:59.148 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:07:59.148 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:07:59.158 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:07:59.158 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:07:59.158 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:07:59.168 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:07:59.168 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:07:59.168 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 18:07:59.378 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 18:07:59.378 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 18:07:59.418 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:07:59.418 -07 000000459 INF: FPGA: Recv YRDPOS 129484
17-03-17 18:07:59.428 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:07:59.428 -07 000000623 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:07:59.428 -07 000000623 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:07:59.428 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.173 mm/sec
17-03-17 18:08:00.378 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:00.378 -07 000000462 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:08:00.388 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:00.388 -07 000000623 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:00.398 -07 000000623 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:00.398 -07 000000623 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:08:00.398 -07 000000623 INF: Y Motor: Moved to 63.2251 after 1435 ms (table move)
17-03-17 18:08:00.408 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139071 mm (DAC = 30380)
17-03-17 18:08:00.408 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:00.408 -07 000000462 INF: FPGA: Recv ZSGSRD 30937
17-03-17 18:08:00.418 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:08:00.418 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:00.418 -07 000000462 INF: FPGA: Recv ZSGSRD 30932
17-03-17 18:08:00.428 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:00.428 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:00.428 -07 000000462 INF: FPGA: Recv ZSGSRD 30936
17-03-17 18:08:00.438 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:00.438 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:00.438 -07 000000462 INF: FPGA: Recv ZSGSRD 30947
17-03-17 18:08:00.448 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:00.448 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:00.448 -07 000000626 INF: FPGA: Recv ZSGSRD 30944
17-03-17 18:08:00.458 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:00.458 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:00.458 -07 000000459 INF: FPGA: Recv ZSGSRD 30943
17-03-17 18:08:00.468 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:00.468 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:00.468 -07 000000623 INF: FPGA: Recv ZSGSRD 30935
17-03-17 18:08:00.478 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:00.478 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:00.478 -07 000000623 INF: FPGA: Recv ZSGSRD 30933
17-03-17 18:08:00.488 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:00.488 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:00.488 -07 000000459 INF: FPGA: Recv ZSGSRD 30938
17-03-17 18:08:00.498 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:00.498 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:00.498 -07 000000626 INF: FPGA: Recv ZSGSRD 30938
17-03-17 18:08:00.508 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:00.508 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:00.508 -07 000000459 INF: FPGA: Recv ZPIEZORD 26841
17-03-17 18:08:00.518 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:00.518 -07 000000475 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -9.0 V.
17-03-17 18:08:00.518 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30938 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30938 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30932 (-138.2 uncal um), Max = 30947 (-138.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:08:00.518 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30938, posNoise = 9, negNoise = 6
17-03-17 18:08:00.518 -07 000000475 INF: Z Motor: After move to -0.139071, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:00.518 -07 000000475 INF: Z Motor: Settle wait time = 1439 ms, measure time = 106 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:08:00.518 -07 000000475 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:00.568 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:08:00.568 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:00.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:00.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:00.568 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:00.568 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:00.568 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:00.568 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:00.568 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:00.568 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:00.578 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:00.578 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:00.588 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:08:00.588 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:08:00.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:00.638 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:00.838 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:00.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:00.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:00.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-17 18:08:00.868 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:00.878 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:00.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:08:00.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:08:00.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:00.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:08:00.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:08:00.978 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:00.978 -07 000000626 INF: Autofocus start
17-03-17 18:08:00.978 -07 000000626 INF: MeasureProfile start
17-03-17 18:08:00.978 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:00.988 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:00.988 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:00.988 -07 000000626 INF: MeasureProfile done
17-03-17 18:08:00.988 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:08:00.988 -07 000000626 INF: Autofocus finished
17-03-17 18:08:01.188 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:01.188 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:01.188 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.139075627252935. ----------
17-03-17 18:08:01.188 -07 000000610 INF: Cycle	9	Tile	5	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:01.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28904, sync = True, waitForSettling = True)
17-03-17 18:08:01.198 -07 000000610 INF: Z Motor: Moving to -0.132314 mm, started at -0.139076 mm, distance = 6.76 um
17-03-17 18:08:01.198 -07 000000610 INF: FPGA: Xmit ZDACW 28904\n [Z Motor]
17-03-17 18:08:01.198 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:08:01.208 -07 000000610 INF: FPGA: 'ZDACW 28904' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:01.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:01.208 -07 000000462 INF: FPGA: Recv ZDACR 28904
17-03-17 18:08:01.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:01.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:01.368 -07 000000626 INF: FPGA: Recv ZSGSRD 29897
17-03-17 18:08:01.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:01.378 -07 000000462 INF: FPGA: Recv ZSGSRD 29888
17-03-17 18:08:01.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:01.388 -07 000000462 INF: FPGA: Recv ZSGSRD 29882
17-03-17 18:08:01.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:01.398 -07 000000623 INF: FPGA: Recv ZSGSRD 29883
17-03-17 18:08:01.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:01.408 -07 000000475 INF: FPGA: Recv ZSGSRD 29888
17-03-17 18:08:01.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:01.418 -07 000000462 INF: FPGA: Recv ZSGSRD 29889
17-03-17 18:08:01.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:01.428 -07 000000462 INF: FPGA: Recv ZSGSRD 29875
17-03-17 18:08:01.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:01.438 -07 000000459 INF: FPGA: Recv ZSGSRD 29890
17-03-17 18:08:01.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:01.448 -07 000000462 INF: FPGA: Recv ZSGSRD 29894
17-03-17 18:08:01.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:01.458 -07 000000623 INF: FPGA: Recv ZSGSRD 29884
17-03-17 18:08:01.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:01.468 -07 000000626 INF: FPGA: Recv ZPIEZORD 25431
17-03-17 18:08:01.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:01.478 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.8 V.
17-03-17 18:08:01.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29887 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29888 (-131.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 29875 (-131.5 uncal um), Max = 29897 (-131.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 18:08:01.478 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29887, posNoise = 10, negNoise = 12
17-03-17 18:08:01.478 -07 000000610 INF: Z Motor: After move to -0.132314, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:01.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:08:01.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:01.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:01.478 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:01.478 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:01.478 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:01.478 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:01.478 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:01.478 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:01.478 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:01.478 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:01.478 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:01.478 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:01.488 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:01.488 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:01.488 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:08:01.488 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:01.498 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:08:01.498 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:08:01.498 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:08:01.498 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:08:01.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29081 150\n [Camera]
17-03-17 18:08:01.558 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:01.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:01.698 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:02.098 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:02.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:02.098 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:02.098 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:02.098 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:08:02.098 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:02.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:02.098 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:02.098 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:02.098 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:08:02.288 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29081 776
17-03-17 18:08:02.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:08:02.478 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:08:02.478 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:08:02.478 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:02.478 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:02.488 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:08:02.488 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:08:02.488 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:08:02.488 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:02.488 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:02.498 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:08:02.628 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:02.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:02.628 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:02.628 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:02.628 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:08:02.628 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:02.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:02.628 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:02.628 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:02.628 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:08:02.638 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.974486,
17-03-17 18:08:02.818 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:08:02.818 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:02.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29081 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 18:08:02.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:02.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132323780291945. ------
17-03-17 18:08:02.938 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:02.938 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13881 mm
17-03-17 18:08:02.938 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:02.938 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:02.938 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:08:02.938 -07 000000623 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:08:02.938 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 30322, sync = True, waitForSettling = False)
17-03-17 18:08:02.938 -07 000000409 INF: Z Motor: Moving to -0.138805 mm, started at -0.132324 mm, distance = -6.48 um
17-03-17 18:08:02.948 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:02.948 -07 000000409 INF: FPGA: Xmit ZDACW 30322\n [Z Motor]
17-03-17 18:08:02.948 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:08:02.958 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:02.958 -07 000000409 INF: FPGA: 'ZDACW 30322' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:08:02.958 -07 000000482 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:08:02.968 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:02.968 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:08:02.968 -07 000000623 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:02.968 -07 000000623 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:02.968 -07 000000623 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:08:02.978 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:02.978 -07 000000576 INF: FPGA: Recv ZDACR 30322
17-03-17 18:08:02.988 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:02.988 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:08:02.988 -07 000000409 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:08:03.018 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:08:03.018 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:08:03.018 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:03.018 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 18:08:03.018 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:08:03.018 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:03.018 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:03.018 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:08:03.018 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:08:03.028 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:08:03.168 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:03.168 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:08:03.358 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:08:03.358 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:08:03.388 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:03.398 -07 000000459 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:08:03.398 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 6 ms to get response, and 6 ms overall
17-03-17 18:08:03.398 -07 000000623 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:03.398 -07 000000623 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:08:03.398 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 18:08:04.348 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:04.348 -07 000000482 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:08:04.358 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:04.358 -07 000000623 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:04.368 -07 000000623 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:04.368 -07 000000623 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:04.368 -07 000000623 INF: Y Motor: Moved to 64.0576 after 1431 ms (table move)
17-03-17 18:08:04.378 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138805 mm (DAC = 30322)
17-03-17 18:08:04.378 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:04.378 -07 000000459 INF: FPGA: Recv ZSGSRD 30895
17-03-17 18:08:04.388 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:04.388 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:04.388 -07 000000424 INF: FPGA: Recv ZSGSRD 30893
17-03-17 18:08:04.398 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:04.398 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:04.398 -07 000000576 INF: FPGA: Recv ZSGSRD 30895
17-03-17 18:08:04.408 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:04.408 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:04.408 -07 000000475 INF: FPGA: Recv ZSGSRD 30897
17-03-17 18:08:04.418 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:04.418 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:04.418 -07 000000501 INF: FPGA: Recv ZSGSRD 30900
17-03-17 18:08:04.428 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:04.428 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:04.428 -07 000000482 INF: FPGA: Recv ZSGSRD 30901
17-03-17 18:08:04.438 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:04.438 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:04.438 -07 000000576 INF: FPGA: Recv ZSGSRD 30904
17-03-17 18:08:04.448 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:04.448 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:04.448 -07 000000501 INF: FPGA: Recv ZSGSRD 30894
17-03-17 18:08:04.458 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:04.458 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:04.458 -07 000000429 INF: FPGA: Recv ZSGSRD 30888
17-03-17 18:08:04.468 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:04.468 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:04.468 -07 000000501 INF: FPGA: Recv ZSGSRD 30896
17-03-17 18:08:04.478 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:04.478 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:04.478 -07 000000429 INF: FPGA: Recv ZPIEZORD 26803
17-03-17 18:08:04.488 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:04.488 -07 000000462 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.0 V.
17-03-17 18:08:04.488 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30896 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30896 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30888 (-138.0 uncal um), Max = 30904 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:08:04.488 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30896, posNoise = 8, negNoise = 8
17-03-17 18:08:04.488 -07 000000462 INF: Z Motor: After move to -0.138805, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:04.488 -07 000000462 INF: Z Motor: Settle wait time = 1435 ms, measure time = 109 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:08:04.488 -07 000000462 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:04.538 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:08:04.538 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:04.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:04.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:04.538 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:04.538 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:04.538 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:04.538 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:04.548 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:08:04.548 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:04.548 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:04.548 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:04.558 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:08:04.558 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:08:04.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:04.608 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:04.808 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:04.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:04.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:04.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:08:04.848 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:04.848 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:04.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:08:04.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:08:04.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:04.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:08:04.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:08:04.948 -07 000000429 INF: Autofocus start
17-03-17 18:08:04.948 -07 000000429 INF: MeasureProfile start
17-03-17 18:08:04.948 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:04.948 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:04.958 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:08:04.958 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:04.968 -07 000000429 INF: MeasureProfile done
17-03-17 18:08:04.968 -07 000000429 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:08:04.968 -07 000000429 INF: Autofocus finished
17-03-17 18:08:05.158 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:05.158 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:05.158 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138805810342982. ----------
17-03-17 18:08:05.158 -07 000000610 INF: Cycle	9	Tile	6	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:05.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28846, sync = True, waitForSettling = True)
17-03-17 18:08:05.168 -07 000000610 INF: Z Motor: Moving to -0.132049 mm, started at -0.138806 mm, distance = 6.76 um
17-03-17 18:08:05.168 -07 000000610 INF: FPGA: Xmit ZDACW 28846\n [Z Motor]
17-03-17 18:08:05.168 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 18:08:05.178 -07 000000610 INF: FPGA: 'ZDACW 28846' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:08:05.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:05.178 -07 000000501 INF: FPGA: Recv ZDACR 28846
17-03-17 18:08:05.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:05.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:05.338 -07 000000482 INF: FPGA: Recv ZSGSRD 29850
17-03-17 18:08:05.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:05.348 -07 000000501 INF: FPGA: Recv ZSGSRD 29850
17-03-17 18:08:05.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:05.358 -07 000000482 INF: FPGA: Recv ZSGSRD 29845
17-03-17 18:08:05.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:05.368 -07 000000482 INF: FPGA: Recv ZSGSRD 29839
17-03-17 18:08:05.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:05.378 -07 000000429 INF: FPGA: Recv ZSGSRD 29846
17-03-17 18:08:05.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:05.388 -07 000000482 INF: FPGA: Recv ZSGSRD 29844
17-03-17 18:08:05.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:05.398 -07 000000429 INF: FPGA: Recv ZSGSRD 29841
17-03-17 18:08:05.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:05.408 -07 000000482 INF: FPGA: Recv ZSGSRD 29849
17-03-17 18:08:05.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:05.418 -07 000000409 INF: FPGA: Recv ZSGSRD 29841
17-03-17 18:08:05.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:05.428 -07 000000482 INF: FPGA: Recv ZSGSRD 29848
17-03-17 18:08:05.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:05.438 -07 000000409 INF: FPGA: Recv ZPIEZORD 25389
17-03-17 18:08:05.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:05.448 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.8 V.
17-03-17 18:08:05.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29845 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29839 (-131.2 uncal um), Max = 29850 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:08:05.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29845, posNoise = 5, negNoise = 6
17-03-17 18:08:05.448 -07 000000610 INF: Z Motor: After move to -0.132049, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:05.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:08:05.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:05.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:05.448 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:05.448 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:05.448 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:05.448 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:05.448 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:05.448 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:05.448 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:05.448 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:05.448 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:05.448 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:05.458 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:05.458 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:05.458 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:08:05.458 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:05.468 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:08:05.468 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:08:05.468 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:08:05.468 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:08:05.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 29023 150\n [Camera]
17-03-17 18:08:05.678 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:06.068 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:06.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:06.068 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:06.068 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:06.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:06.068 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:06.068 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:06.068 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:08:06.078 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:06.078 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:08:06.258 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29023 776
17-03-17 18:08:06.408 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:06.468 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:08:06.468 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:08:06.468 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:06.468 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:08:06.468 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:08:06.468 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:06.478 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:08:06.478 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:08:06.478 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:06.478 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:08:06.558 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:06.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:06.598 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:06.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:06.598 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:06.598 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:06.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:06.598 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:06.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:08:06.598 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:06.608 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:06.608 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 18:08:06.788 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:08:06.788 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:06.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 29023 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 18:08:06.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:06.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132053963381991. ------
17-03-17 18:08:06.788 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:06.788 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13857 mm
17-03-17 18:08:06.788 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:06.908 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:06.908 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 117 ms to get response, and 118 ms overall
17-03-17 18:08:06.908 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:06.908 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30271, sync = True, waitForSettling = False)
17-03-17 18:08:06.908 -07 000000458 INF: Z Motor: Moving to -0.138572 mm, started at -0.132054 mm, distance = -6.52 um
17-03-17 18:08:06.908 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:08:06.908 -07 000000429 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:08:06.918 -07 000000458 INF: FPGA: Xmit ZDACW 30271\n [Z Motor]
17-03-17 18:08:06.918 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:08:06.928 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:06.928 -07 000000458 INF: FPGA: 'ZDACW 30271' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:08:06.928 -07 000000547 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:08:06.938 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:08:06.938 -07 000000429 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:06.938 -07 000000429 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:06.938 -07 000000429 INF: Y Motor: Moving 1336 steps-10
17-03-17 18:08:06.938 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:06.938 -07 000000480 INF: FPGA: Recv ZDACR 30271
17-03-17 18:08:06.948 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:08:06.948 -07 000000458 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 18:08:06.948 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:06.988 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:08:06.988 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:08:06.988 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:06.998 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:08:06.998 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:08:06.998 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:06.998 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:06.998 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:06.998 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:08:07.008 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:08:07.118 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:07.118 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 18:08:07.318 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:08:07.318 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:08:07.348 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:07.358 -07 000000475 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:08:07.358 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:08:07.358 -07 000000429 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:07.358 -07 000000429 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:08:07.358 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.835 mm, average velocity = 2.152 mm/sec
17-03-17 18:08:08.008 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.960826,
17-03-17 18:08:08.308 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:08.308 -07 000000482 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:08:08.318 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:08.318 -07 000000429 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:08.338 -07 000000429 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:08.338 -07 000000429 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:08.338 -07 000000429 INF: Y Motor: Moved to 64.8794 after 1421 ms (table move)
17-03-17 18:08:08.338 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138572 mm (DAC = 30271)
17-03-17 18:08:08.338 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:08.338 -07 000000482 INF: FPGA: Recv ZSGSRD 30861
17-03-17 18:08:08.348 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:08.348 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:08.348 -07 000000462 INF: FPGA: Recv ZSGSRD 30857
17-03-17 18:08:08.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:08.358 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:08.358 -07 000000424 INF: FPGA: Recv ZSGSRD 30859
17-03-17 18:08:08.368 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:08.378 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:08.378 -07 000000569 INF: FPGA: Recv ZSGSRD 30865
17-03-17 18:08:08.388 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:08:08.408 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:08.408 -07 000000478 INF: FPGA: Recv ZSGSRD 30856
17-03-17 18:08:08.418 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:08:08.438 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:08.438 -07 000000458 INF: FPGA: Recv ZSGSRD 30863
17-03-17 18:08:08.448 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:08:08.448 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:08.448 -07 000000431 INF: FPGA: Recv ZSGSRD 30864
17-03-17 18:08:08.458 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:08.458 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:08.458 -07 000000458 INF: FPGA: Recv ZSGSRD 30861
17-03-17 18:08:08.468 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:08.468 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:08.468 -07 000000462 INF: FPGA: Recv ZSGSRD 30868
17-03-17 18:08:08.478 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:08.478 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:08.478 -07 000000475 INF: FPGA: Recv ZSGSRD 30863
17-03-17 18:08:08.488 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:08.488 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:08.488 -07 000000462 INF: FPGA: Recv ZPIEZORD 26716
17-03-17 18:08:08.498 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:08.498 -07 000000501 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -9.1 V.
17-03-17 18:08:08.498 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30862 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30862 (-137.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30856 (-137.7 uncal um), Max = 30868 (-137.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:08:08.498 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30862, posNoise = 6, negNoise = 6
17-03-17 18:08:08.498 -07 000000501 INF: Z Motor: After move to -0.138572, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:08.498 -07 000000501 INF: Z Motor: Settle wait time = 1424 ms, measure time = 158 ms (allowed 150 ms), total time = 1582 ms
17-03-17 18:08:08.498 -07 000000501 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-17 18:08:08.498 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1701 ms
17-03-17 18:08:08.498 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:08.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:08.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:08.498 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:08.498 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:08.498 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:08.498 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:08.508 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:08:08.508 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:08.508 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:08.508 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:08.518 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:08:08.518 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:08:08.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:08.568 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:08.768 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:08.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:08.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:08.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:08:08.808 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:08.808 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:08.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 18:08:08.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 18:08:08.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:08.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:08:08.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 18:08:08.908 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:08.908 -07 000000569 INF: Autofocus start
17-03-17 18:08:08.908 -07 000000569 INF: MeasureProfile start
17-03-17 18:08:08.908 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:08.918 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:08:08.918 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:08.918 -07 000000569 INF: MeasureProfile done
17-03-17 18:08:08.918 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:08:08.918 -07 000000569 INF: Autofocus finished
17-03-17 18:08:09.118 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:09.118 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:09.118 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138587387130162. ----------
17-03-17 18:08:09.118 -07 000000610 INF: Cycle	9	Tile	7	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:09.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28778, sync = True, waitForSettling = True)
17-03-17 18:08:09.128 -07 000000610 INF: Z Motor: Moving to -0.131737 mm, started at -0.138587 mm, distance = 6.85 um
17-03-17 18:08:09.128 -07 000000610 INF: FPGA: Xmit ZDACW 28778\n [Z Motor]
17-03-17 18:08:09.128 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:08:09.138 -07 000000610 INF: FPGA: 'ZDACW 28778' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:09.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:09.138 -07 000000462 INF: FPGA: Recv ZDACR 28778
17-03-17 18:08:09.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:09.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:09.298 -07 000000462 INF: FPGA: Recv ZSGSRD 29805
17-03-17 18:08:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:09.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:09.308 -07 000000462 INF: FPGA: Recv ZSGSRD 29794
17-03-17 18:08:09.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:09.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:09.318 -07 000000462 INF: FPGA: Recv ZSGSRD 29798
17-03-17 18:08:09.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:09.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:09.328 -07 000000429 INF: FPGA: Recv ZSGSRD 29796
17-03-17 18:08:09.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:09.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:09.338 -07 000000569 INF: FPGA: Recv ZSGSRD 29798
17-03-17 18:08:09.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:09.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:09.348 -07 000000569 INF: FPGA: Recv ZSGSRD 29804
17-03-17 18:08:09.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:09.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:09.358 -07 000000462 INF: FPGA: Recv ZSGSRD 29794
17-03-17 18:08:09.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:09.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:09.368 -07 000000480 INF: FPGA: Recv ZSGSRD 29796
17-03-17 18:08:09.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:09.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:09.378 -07 000000429 INF: FPGA: Recv ZSGSRD 29799
17-03-17 18:08:09.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:09.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:09.388 -07 000000429 INF: FPGA: Recv ZSGSRD 29795
17-03-17 18:08:09.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:09.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:09.398 -07 000000569 INF: FPGA: Recv ZPIEZORD 25330
17-03-17 18:08:09.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:09.408 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.8 V.
17-03-17 18:08:09.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29798 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29797 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29794 (-130.9 uncal um), Max = 29805 (-131.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:08:09.408 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29798, posNoise = 7, negNoise = 4
17-03-17 18:08:09.408 -07 000000610 INF: Z Motor: After move to -0.131737, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:09.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:08:09.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:09.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:09.408 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:09.408 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:09.408 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:09.408 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:09.408 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:09.408 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:09.408 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:09.408 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:09.408 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:09.408 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:09.418 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:08:09.418 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:09.418 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:09.418 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:09.428 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:08:09.428 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:08:09.428 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:08:09.428 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:08:09.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28955 150\n [Camera]
17-03-17 18:08:09.628 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:10.028 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:10.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:10.028 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:10.028 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:10.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:10.028 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:10.028 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:10.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:08:10.038 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:10.038 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:08:10.218 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28955 776
17-03-17 18:08:10.368 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:10.408 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:08:10.408 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:08:10.408 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:10.408 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:08:10.408 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:08:10.408 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:10.408 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:10.418 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:10.418 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:08:10.418 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:08:10.558 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:10.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:10.558 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:10.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:10.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:10.558 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:10.568 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:10.568 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 18:08:10.568 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:10.568 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 18:08:10.748 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:08:10.748 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:10.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28955 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 18:08:10.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:10.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131752025411328. ------
17-03-17 18:08:10.758 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:10.758 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13832 mm
17-03-17 18:08:10.758 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:10.758 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:10.758 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:08:10.758 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:08:10.758 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30216, sync = True, waitForSettling = False)
17-03-17 18:08:10.758 -07 000000623 INF: Z Motor: Moving to -0.138320 mm, started at -0.131752 mm, distance = -6.57 um
17-03-17 18:08:10.768 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:10.768 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:10.768 -07 000000626 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:08:10.778 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:08:10.778 -07 000000623 INF: FPGA: Xmit ZDACW 30216\n [Z Motor]
17-03-17 18:08:10.778 -07 000000462 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:10.778 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:08:10.778 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:10.778 -07 000000462 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:08:10.788 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:10.788 -07 000000623 INF: FPGA: 'ZDACW 30216' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:08:10.798 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:10.808 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:10.808 -07 000000459 INF: FPGA: Recv ZDACR 30216
17-03-17 18:08:10.818 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:08:10.818 -07 000000623 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:08:10.968 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:08:10.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:08:10.968 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:08:10.968 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:10.968 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:08:10.968 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:10.968 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:10.968 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:08:10.968 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:10.978 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:08:10.988 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:10.988 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:08:11.168 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:08:11.168 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:08:11.208 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:11.208 -07 000000626 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:08:11.218 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:11.218 -07 000000462 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:11.218 -07 000000462 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:08:11.218 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-17 18:08:11.558 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:11.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:12.168 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:12.168 -07 000000576 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:08:12.178 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:12.178 -07 000000462 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:12.198 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:12.198 -07 000000462 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:12.198 -07 000000462 INF: Y Motor: Moved to 65.7148 after 1434 ms (table move)
17-03-17 18:08:12.198 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138320 mm (DAC = 30216)
17-03-17 18:08:12.198 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:12.198 -07 000000480 INF: FPGA: Recv ZSGSRD 30820
17-03-17 18:08:12.208 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:08:12.208 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:12.208 -07 000000480 INF: FPGA: Recv ZSGSRD 30820
17-03-17 18:08:12.218 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:12.218 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:12.218 -07 000000424 INF: FPGA: Recv ZSGSRD 30817
17-03-17 18:08:12.228 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:12.228 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:12.228 -07 000000431 INF: FPGA: Recv ZSGSRD 30828
17-03-17 18:08:12.238 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:12.238 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:12.238 -07 000000431 INF: FPGA: Recv ZSGSRD 30816
17-03-17 18:08:12.248 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:12.248 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:12.248 -07 000000431 INF: FPGA: Recv ZSGSRD 30824
17-03-17 18:08:12.258 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:12.258 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:12.258 -07 000000431 INF: FPGA: Recv ZSGSRD 30825
17-03-17 18:08:12.268 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:12.268 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:12.268 -07 000000480 INF: FPGA: Recv ZSGSRD 30814
17-03-17 18:08:12.278 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:12.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:12.278 -07 000000623 INF: FPGA: Recv ZSGSRD 30816
17-03-17 18:08:12.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:12.288 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:12.288 -07 000000623 INF: FPGA: Recv ZSGSRD 30823
17-03-17 18:08:12.298 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:12.298 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:12.298 -07 000000626 INF: FPGA: Recv ZPIEZORD 26670
17-03-17 18:08:12.308 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:12.308 -07 000000476 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.611 V. Piezo Error = -9.1 V.
17-03-17 18:08:12.308 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30820 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30820 (-137.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30814 (-137.5 uncal um), Max = 30828 (-137.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:08:12.308 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30820, posNoise = 8, negNoise = 6
17-03-17 18:08:12.308 -07 000000476 INF: Z Motor: After move to -0.138320, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:12.308 -07 000000476 INF: Z Motor: Settle wait time = 1438 ms, measure time = 106 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:08:12.308 -07 000000476 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:12.358 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 18:08:12.358 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:12.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:12.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:12.358 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:12.358 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:12.358 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:12.358 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:12.358 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:12.358 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:12.368 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:12.368 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:12.378 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:08:12.378 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:08:12.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:12.428 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:12.628 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:12.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:12.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:12.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 18:08:12.668 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:12.668 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:12.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:08:12.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:08:12.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:12.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:08:12.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:08:12.768 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:12.768 -07 000000480 INF: Autofocus start
17-03-17 18:08:12.768 -07 000000480 INF: MeasureProfile start
17-03-17 18:08:12.768 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:12.778 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:08:12.778 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:12.778 -07 000000480 INF: MeasureProfile done
17-03-17 18:08:12.778 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:08:12.778 -07 000000480 INF: Autofocus finished
17-03-17 18:08:12.978 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:12.978 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:12.978 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138317570220208. ----------
17-03-17 18:08:12.978 -07 000000610 INF: Cycle	9	Tile	8	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:12.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28723, sync = True, waitForSettling = True)
17-03-17 18:08:12.988 -07 000000610 INF: Z Motor: Moving to -0.131485 mm, started at -0.138318 mm, distance = 6.83 um
17-03-17 18:08:12.988 -07 000000610 INF: FPGA: Xmit ZDACW 28723\n [Z Motor]
17-03-17 18:08:12.988 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:08:12.998 -07 000000610 INF: FPGA: 'ZDACW 28723' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:12.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:12.998 -07 000000462 INF: FPGA: Recv ZDACR 28723
17-03-17 18:08:13.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:13.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:13.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:13.158 -07 000000623 INF: FPGA: Recv ZSGSRD 29762
17-03-17 18:08:13.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:13.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:13.168 -07 000000462 INF: FPGA: Recv ZSGSRD 29763
17-03-17 18:08:13.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:13.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:13.178 -07 000000623 INF: FPGA: Recv ZSGSRD 29757
17-03-17 18:08:13.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:13.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:13.188 -07 000000462 INF: FPGA: Recv ZSGSRD 29755
17-03-17 18:08:13.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:13.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:13.198 -07 000000623 INF: FPGA: Recv ZSGSRD 29757
17-03-17 18:08:13.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:13.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:13.208 -07 000000626 INF: FPGA: Recv ZSGSRD 29764
17-03-17 18:08:13.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:13.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:13.218 -07 000000480 INF: FPGA: Recv ZSGSRD 29759
17-03-17 18:08:13.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:13.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:13.228 -07 000000623 INF: FPGA: Recv ZSGSRD 29750
17-03-17 18:08:13.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:13.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:13.238 -07 000000480 INF: FPGA: Recv ZSGSRD 29752
17-03-17 18:08:13.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:13.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:13.248 -07 000000626 INF: FPGA: Recv ZSGSRD 29756
17-03-17 18:08:13.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:13.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:13.258 -07 000000462 INF: FPGA: Recv ZPIEZORD 25296
17-03-17 18:08:13.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:13.268 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -9.8 V.
17-03-17 18:08:13.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29758 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29757 (-130.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29750 (-130.7 uncal um), Max = 29764 (-130.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:08:13.268 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29758, posNoise = 6, negNoise = 8
17-03-17 18:08:13.268 -07 000000610 INF: Z Motor: After move to -0.131485, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:13.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:08:13.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:13.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:13.268 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:13.268 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:13.268 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:13.268 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:13.268 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:13.268 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:13.268 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:13.268 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:13.268 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:13.268 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:13.278 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:13.278 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:13.278 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:08:13.278 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:13.288 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:08:13.288 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:08:13.288 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:08:13.288 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:08:13.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28900 150\n [Camera]
17-03-17 18:08:13.368 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.986717,
17-03-17 18:08:13.488 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:13.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:13.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:13.888 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:13.888 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:13.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:08:13.888 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:13.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:13.888 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:13.888 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:13.888 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:08:14.078 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28900 776
17-03-17 18:08:14.228 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:14.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:08:14.268 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:08:14.268 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:14.268 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:08:14.268 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:08:14.268 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:14.268 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:14.268 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:08:14.268 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:14.278 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:08:14.418 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:14.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:14.418 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:14.418 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:14.418 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:08:14.418 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:14.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:14.418 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:14.418 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:14.418 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:08:14.608 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:08:14.608 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:14.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28900 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 18:08:14.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:14.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131495056925658. ------
17-03-17 18:08:14.608 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13786 mm
17-03-17 18:08:14.608 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:14.608 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:14.618 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:14.618 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:08:14.618 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30116, sync = True, waitForSettling = False)
17-03-17 18:08:14.618 -07 000000547 INF: Z Motor: Moving to -0.137862 mm, started at -0.131495 mm, distance = -6.37 um
17-03-17 18:08:14.618 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:14.618 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:08:14.618 -07 000000431 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:08:14.628 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:14.628 -07 000000482 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:08:14.638 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 18:08:14.638 -07 000000431 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:14.638 -07 000000547 INF: FPGA: Xmit ZDACW 30116\n [Z Motor]
17-03-17 18:08:14.748 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 18:08:14.748 -07 000000547 INF: FPGA: 'ZDACW 30116' command took 0 ms to send, 0 ms to get response, and 129 ms overall
17-03-17 18:08:14.748 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:14.748 -07 000000431 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:14.748 -07 000000431 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:08:14.748 -07 000000475 INF: FPGA: Recv ZDACR 30116
17-03-17 18:08:14.758 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:14.758 -07 000000547 INF: Z Motor: MoveAbsStepped took 136 ms (did NOT wait for settling yet))
17-03-17 18:08:14.758 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:14.798 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:08:14.798 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 18:08:14.798 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:14.798 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 18:08:14.798 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 18:08:14.798 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:14.798 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:14.798 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:08:14.798 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:08:14.808 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:08:14.818 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:14.818 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 18:08:15.128 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:08:15.128 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:08:15.168 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:15.168 -07 000000424 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:08:15.178 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:15.178 -07 000000431 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:15.178 -07 000000431 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:08:15.178 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.182 mm/sec
17-03-17 18:08:16.128 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:16.128 -07 000000409 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:08:16.138 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:16.138 -07 000000431 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:16.158 -07 000000431 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:16.158 -07 000000431 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:08:16.158 -07 000000431 INF: Y Motor: Moved to 66.5400 after 1536 ms (table move)
17-03-17 18:08:16.158 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137862 mm (DAC = 30116)
17-03-17 18:08:16.158 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:16.158 -07 000000476 INF: FPGA: Recv ZSGSRD 30758
17-03-17 18:08:16.168 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:16.168 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:16.168 -07 000000431 INF: FPGA: Recv ZSGSRD 30748
17-03-17 18:08:16.178 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:16.178 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:16.178 -07 000000458 INF: FPGA: Recv ZSGSRD 30748
17-03-17 18:08:16.188 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:16.188 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:16.188 -07 000000476 INF: FPGA: Recv ZSGSRD 30755
17-03-17 18:08:16.198 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:16.198 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:16.198 -07 000000458 INF: FPGA: Recv ZSGSRD 30758
17-03-17 18:08:16.208 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:16.208 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:16.208 -07 000000569 INF: FPGA: Recv ZSGSRD 30746
17-03-17 18:08:16.218 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:16.218 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:16.218 -07 000000547 INF: FPGA: Recv ZSGSRD 30744
17-03-17 18:08:16.228 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:16.228 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:16.228 -07 000000409 INF: FPGA: Recv ZSGSRD 30741
17-03-17 18:08:16.238 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:16.238 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:16.238 -07 000000458 INF: FPGA: Recv ZSGSRD 30755
17-03-17 18:08:16.248 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:16.248 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:16.248 -07 000000476 INF: FPGA: Recv ZSGSRD 30748
17-03-17 18:08:16.258 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:16.258 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:16.258 -07 000000576 INF: FPGA: Recv ZPIEZORD 26625
17-03-17 18:08:16.268 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:16.268 -07 000000462 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.595 V. Piezo Error = -9.1 V.
17-03-17 18:08:16.268 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30750 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30748 (-137.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30741 (-137.0 uncal um), Max = 30758 (-137.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:08:16.268 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30750, posNoise = 8, negNoise = 9
17-03-17 18:08:16.268 -07 000000462 INF: Z Motor: After move to -0.137862, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:16.268 -07 000000462 INF: Z Motor: Settle wait time = 1540 ms, measure time = 107 ms (allowed 150 ms), total time = 1647 ms
17-03-17 18:08:16.268 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:16.318 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1700 ms
17-03-17 18:08:16.318 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:16.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:16.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:16.318 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:16.318 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:16.318 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:16.318 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:16.318 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:16.318 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:16.328 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:16.328 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:16.338 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:08:16.338 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:08:16.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:16.378 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:16.558 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:16.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:16.578 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:16.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:16.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:16.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:08:16.618 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:16.618 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:16.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:08:16.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:08:16.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:16.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:08:16.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:08:16.818 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:16.818 -07 000000462 INF: Autofocus start
17-03-17 18:08:16.818 -07 000000462 INF: MeasureProfile start
17-03-17 18:08:16.818 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:16.828 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:08:16.828 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:16.828 -07 000000462 INF: MeasureProfile done
17-03-17 18:08:16.828 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:08:16.828 -07 000000462 INF: Autofocus finished
17-03-17 18:08:17.028 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:17.028 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:17.028 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.137867875370284. ----------
17-03-17 18:08:17.028 -07 000000610 INF: Cycle	9	Tile	9	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:17.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28640, sync = True, waitForSettling = True)
17-03-17 18:08:17.038 -07 000000610 INF: Z Motor: Moving to -0.131106 mm, started at -0.137868 mm, distance = 6.76 um
17-03-17 18:08:17.038 -07 000000610 INF: FPGA: Xmit ZDACW 28640\n [Z Motor]
17-03-17 18:08:17.038 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 18:08:17.048 -07 000000610 INF: FPGA: 'ZDACW 28640' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:17.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:17.048 -07 000000547 INF: FPGA: Recv ZDACR 28640
17-03-17 18:08:17.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:17.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:17.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:17.208 -07 000000458 INF: FPGA: Recv ZSGSRD 29705
17-03-17 18:08:17.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:17.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:17.218 -07 000000431 INF: FPGA: Recv ZSGSRD 29698
17-03-17 18:08:17.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:17.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:17.228 -07 000000424 INF: FPGA: Recv ZSGSRD 29694
17-03-17 18:08:17.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:17.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:17.238 -07 000000409 INF: FPGA: Recv ZSGSRD 29698
17-03-17 18:08:17.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:17.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:17.248 -07 000000458 INF: FPGA: Recv ZSGSRD 29699
17-03-17 18:08:17.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:17.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:17.258 -07 000000475 INF: FPGA: Recv ZSGSRD 29698
17-03-17 18:08:17.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:17.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:17.268 -07 000000626 INF: FPGA: Recv ZSGSRD 29699
17-03-17 18:08:17.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:17.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:17.278 -07 000000424 INF: FPGA: Recv ZSGSRD 29701
17-03-17 18:08:17.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:17.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:17.288 -07 000000458 INF: FPGA: Recv ZSGSRD 29700
17-03-17 18:08:17.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:17.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:17.298 -07 000000475 INF: FPGA: Recv ZSGSRD 29700
17-03-17 18:08:17.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:17.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:17.308 -07 000000547 INF: FPGA: Recv ZPIEZORD 25200
17-03-17 18:08:17.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:17.318 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.9 V.
17-03-17 18:08:17.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29699 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29699 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29694 (-130.3 uncal um), Max = 29705 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:08:17.318 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29699, posNoise = 6, negNoise = 5
17-03-17 18:08:17.318 -07 000000610 INF: Z Motor: After move to -0.131106, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:17.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:08:17.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:17.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:17.318 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:17.318 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:17.318 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:17.318 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:17.318 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:17.318 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:17.318 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:17.318 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:17.318 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:17.318 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:17.328 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:17.328 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:17.328 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:08:17.328 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:17.338 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:08:17.338 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:08:17.338 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:08:17.338 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:08:17.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28817 150\n [Camera]
17-03-17 18:08:17.548 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:17.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:17.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:17.938 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:17.938 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:17.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:17.938 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:17.938 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:08:17.938 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:17.948 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:17.948 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 18:08:18.128 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28817 776
17-03-17 18:08:18.278 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:18.318 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:08:18.318 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:08:18.318 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:18.318 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 18:08:18.318 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 18:08:18.318 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:18.318 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:08:18.318 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:08:18.318 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:18.328 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:08:18.468 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:18.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:18.468 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:18.468 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:18.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:18.468 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:18.478 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:18.478 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:08:18.478 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:18.478 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 18:08:18.658 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:08:18.658 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:18.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28817 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 18:08:18.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:18.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131116028409294. ------
17-03-17 18:08:18.658 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:18.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:08:18.848 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:08:18.848 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:18.858 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:08:18.858 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:08:18.868 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:08:18.868 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:08:18.868 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:18.868 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:08:18.868 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:08:18.918 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13788 mm
17-03-17 18:08:18.918 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:19.028 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:19.028 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 367 ms to get response, and 368 ms overall
17-03-17 18:08:19.028 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:19.028 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:08:19.028 -07 000000480 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:08:19.038 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:19.748 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.001704,
17-03-17 18:08:19.748 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30120, sync = True, waitForSettling = False)
17-03-17 18:08:19.748 -07 000000501 INF: Z Motor: Moving to -0.137881 mm, started at -0.131116 mm, distance = -6.76 um
17-03-17 18:08:19.758 -07 000000501 INF: FPGA: Xmit ZDACW 30120\n [Z Motor]
17-03-17 18:08:20.748 -07 000000459 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:08:20.748 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:20.748 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:08:20.748 -07 000000501 INF: FPGA: 'ZDACW 30120' command took 0 ms to send, 980 ms to get response, and 998 ms overall
17-03-17 18:08:20.748 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1710 ms to get response, and 1712 ms overall
17-03-17 18:08:20.748 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1700 ms to get response, and 1710 ms overall
17-03-17 18:08:20.748 -07 000000480 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:20.748 -07 000000480 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:20.748 -07 000000480 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:08:20.778 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:20.778 -07 000000459 INF: FPGA: Recv ZDACR 30120
17-03-17 18:08:20.788 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 18:08:20.788 -07 000000501 INF: Z Motor: MoveAbsStepped took 1037 ms (did NOT wait for settling yet))
17-03-17 18:08:20.788 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:21.158 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:08:21.158 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 416 ms overall
17-03-17 18:08:21.198 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:21.198 -07 000000462 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:08:21.208 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:21.208 -07 000000480 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:21.208 -07 000000480 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:08:21.208 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 416 ms, distance = 0.843 mm, average velocity = 2.025 mm/sec
17-03-17 18:08:21.558 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:21.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:22.158 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:22.158 -07 000000459 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:08:22.168 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:22.168 -07 000000480 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:22.188 -07 000000480 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:22.188 -07 000000480 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:22.188 -07 000000480 INF: Y Motor: Moved to 67.3726 after 3152 ms (table move)
17-03-17 18:08:22.188 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137881 mm (DAC = 30120)
17-03-17 18:08:22.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:22.188 -07 000000476 INF: FPGA: Recv ZSGSRD 30753
17-03-17 18:08:22.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:08:22.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:22.198 -07 000000501 INF: FPGA: Recv ZSGSRD 30746
17-03-17 18:08:22.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:22.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:22.208 -07 000000462 INF: FPGA: Recv ZSGSRD 30759
17-03-17 18:08:22.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:22.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:22.218 -07 000000501 INF: FPGA: Recv ZSGSRD 30758
17-03-17 18:08:22.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:22.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:22.228 -07 000000462 INF: FPGA: Recv ZSGSRD 30760
17-03-17 18:08:22.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:22.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:22.238 -07 000000501 INF: FPGA: Recv ZSGSRD 30758
17-03-17 18:08:22.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:22.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:22.248 -07 000000429 INF: FPGA: Recv ZSGSRD 30754
17-03-17 18:08:22.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:22.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:22.258 -07 000000476 INF: FPGA: Recv ZSGSRD 30754
17-03-17 18:08:22.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:22.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:22.268 -07 000000623 INF: FPGA: Recv ZSGSRD 30748
17-03-17 18:08:22.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:22.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:22.278 -07 000000429 INF: FPGA: Recv ZSGSRD 30750
17-03-17 18:08:22.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:22.288 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:22.288 -07 000000480 INF: FPGA: Recv ZPIEZORD 26636
17-03-17 18:08:22.298 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:22.298 -07 000000431 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -9.1 V.
17-03-17 18:08:22.298 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30754 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30754 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30746 (-137.0 uncal um), Max = 30760 (-137.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:08:22.298 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30754, posNoise = 6, negNoise = 8
17-03-17 18:08:22.298 -07 000000431 INF: Z Motor: After move to -0.137881, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:22.298 -07 000000431 INF: Z Motor: Settle wait time = 2443 ms, measure time = 104 ms (allowed 150 ms), total time = 2547 ms
17-03-17 18:08:22.298 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:22.348 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3429 ms
17-03-17 18:08:22.348 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:22.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:22.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:22.348 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:22.348 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:22.348 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:22.348 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:22.358 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:22.358 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:22.358 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:22.358 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:22.358 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:08:22.368 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:08:22.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:22.408 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:22.608 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:22.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:22.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:22.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:08:22.648 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:22.648 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:22.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 18:08:22.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:08:22.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:22.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:08:22.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:08:22.758 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:22.758 -07 000000429 INF: Autofocus start
17-03-17 18:08:22.758 -07 000000429 INF: MeasureProfile start
17-03-17 18:08:22.758 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:22.768 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:08:22.768 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:22.768 -07 000000429 INF: MeasureProfile done
17-03-17 18:08:22.768 -07 000000429 INF: X=-3  Z correction [um]=-0.01800644
17-03-17 18:08:22.768 -07 000000429 INF: Autofocus finished
17-03-17 18:08:22.968 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:22.968 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:22.968 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137893572218851. ----------
17-03-17 18:08:22.978 -07 000000610 INF: Cycle	9	Tile	10	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:22.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28628, sync = True, waitForSettling = True)
17-03-17 18:08:22.978 -07 000000610 INF: Z Motor: Moving to -0.131051 mm, started at -0.137894 mm, distance = 6.84 um
17-03-17 18:08:22.978 -07 000000610 INF: FPGA: Xmit ZDACW 28628\n [Z Motor]
17-03-17 18:08:22.978 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:08:22.988 -07 000000610 INF: FPGA: 'ZDACW 28628' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:08:22.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:22.988 -07 000000480 INF: FPGA: Recv ZDACR 28628
17-03-17 18:08:22.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:22.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:23.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:23.148 -07 000000424 INF: FPGA: Recv ZSGSRD 29693
17-03-17 18:08:23.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:23.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:23.158 -07 000000424 INF: FPGA: Recv ZSGSRD 29691
17-03-17 18:08:23.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:23.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:23.168 -07 000000480 INF: FPGA: Recv ZSGSRD 29690
17-03-17 18:08:23.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:23.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:23.178 -07 000000480 INF: FPGA: Recv ZSGSRD 29686
17-03-17 18:08:23.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:23.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:23.188 -07 000000476 INF: FPGA: Recv ZSGSRD 29694
17-03-17 18:08:23.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:23.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:23.198 -07 000000459 INF: FPGA: Recv ZSGSRD 29688
17-03-17 18:08:23.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:23.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:23.208 -07 000000459 INF: FPGA: Recv ZSGSRD 29695
17-03-17 18:08:23.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:23.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:23.218 -07 000000459 INF: FPGA: Recv ZSGSRD 29689
17-03-17 18:08:23.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:23.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:23.228 -07 000000459 INF: FPGA: Recv ZSGSRD 29693
17-03-17 18:08:23.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:23.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:23.238 -07 000000459 INF: FPGA: Recv ZSGSRD 29692
17-03-17 18:08:23.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:23.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:23.248 -07 000000623 INF: FPGA: Recv ZPIEZORD 25226
17-03-17 18:08:23.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:23.258 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.8 V.
17-03-17 18:08:23.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29691 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29692 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29686 (-130.3 uncal um), Max = 29695 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:08:23.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29691, posNoise = 4, negNoise = 5
17-03-17 18:08:23.258 -07 000000610 INF: Z Motor: After move to -0.131051, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:23.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:08:23.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:23.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:23.258 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:23.258 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:23.258 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:23.258 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:23.258 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:23.258 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:23.258 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:23.258 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:23.258 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:23.258 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:23.268 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:23.268 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:23.268 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:08:23.268 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:23.268 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:08:23.268 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:08:23.278 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:08:23.278 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:08:23.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28805 150\n [Camera]
17-03-17 18:08:23.478 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:23.868 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:23.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:23.868 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:23.868 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:23.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:23.868 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:23.878 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:23.878 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:08:23.878 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:23.878 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:08:24.058 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28805 776
17-03-17 18:08:24.208 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:24.248 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:08:24.248 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 18:08:24.248 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:24.248 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 18:08:24.248 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 18:08:24.248 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:24.258 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:24.258 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:08:24.258 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:08:24.258 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:08:24.398 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:24.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:24.398 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:24.398 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:24.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:24.398 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:24.518 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:24.518 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:08:24.518 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:24.518 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:08:24.588 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:08:24.588 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:24.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28805 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 18:08:24.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:24.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.13106463471216. ------
17-03-17 18:08:24.598 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:24.598 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13703 mm
17-03-17 18:08:24.598 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:24.598 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:08:24.598 -07 000000623 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:08:24.608 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:24.888 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:08:24.898 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:08:24.898 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:24.898 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:24.898 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:08:24.898 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:08:24.898 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:24.908 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:24.908 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 18:08:24.908 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 18:08:24.928 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:24.928 -07 000000480 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:08:24.928 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 319 ms to get response, and 333 ms overall
17-03-17 18:08:24.928 -07 000000623 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:24.938 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 329 ms to get response, and 338 ms overall
17-03-17 18:08:24.938 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29935, sync = True, waitForSettling = False)
17-03-17 18:08:24.938 -07 000000475 INF: Z Motor: Moving to -0.137034 mm, started at -0.131065 mm, distance = -5.97 um
17-03-17 18:08:24.938 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:24.938 -07 000000623 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:24.938 -07 000000623 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:08:24.948 -07 000000475 INF: FPGA: Xmit ZDACW 29935\n [Z Motor]
17-03-17 18:08:24.948 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:08:24.958 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:24.958 -07 000000475 INF: FPGA: 'ZDACW 29935' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:08:24.968 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:24.968 -07 000000480 INF: FPGA: Recv ZDACR 29935
17-03-17 18:08:24.978 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:08:24.978 -07 000000475 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:08:25.138 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:25.138 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:25.328 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:08:25.328 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:08:25.368 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:25.368 -07 000000480 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:08:25.378 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:25.378 -07 000000623 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:25.378 -07 000000623 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:08:25.378 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.138 mm/sec
17-03-17 18:08:26.128 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.020806,
17-03-17 18:08:26.328 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:26.328 -07 000000480 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:08:26.338 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:26.338 -07 000000623 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:26.348 -07 000000623 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:26.348 -07 000000623 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:26.348 -07 000000623 INF: Y Motor: Moved to 68.2056 after 1753 ms (table move)
17-03-17 18:08:26.358 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137034 mm (DAC = 29935)
17-03-17 18:08:26.358 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:26.358 -07 000000458 INF: FPGA: Recv ZSGSRD 30626
17-03-17 18:08:26.368 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:08:26.368 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:26.368 -07 000000431 INF: FPGA: Recv ZSGSRD 30623
17-03-17 18:08:26.378 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:26.378 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:26.378 -07 000000480 INF: FPGA: Recv ZSGSRD 30625
17-03-17 18:08:26.388 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:26.388 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:26.388 -07 000000409 INF: FPGA: Recv ZSGSRD 30625
17-03-17 18:08:26.398 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:26.398 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:26.398 -07 000000458 INF: FPGA: Recv ZSGSRD 30625
17-03-17 18:08:26.408 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:26.408 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:26.408 -07 000000409 INF: FPGA: Recv ZSGSRD 30617
17-03-17 18:08:26.418 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:26.418 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:26.418 -07 000000478 INF: FPGA: Recv ZSGSRD 30620
17-03-17 18:08:26.428 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:26.438 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:26.438 -07 000000458 INF: FPGA: Recv ZSGSRD 30617
17-03-17 18:08:26.448 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:08:26.458 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:26.458 -07 000000623 INF: FPGA: Recv ZSGSRD 30620
17-03-17 18:08:26.468 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:08:26.488 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:26.488 -07 000000480 INF: FPGA: Recv ZSGSRD 30616
17-03-17 18:08:26.498 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:08:26.508 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:26.508 -07 000000623 INF: FPGA: Recv ZPIEZORD 26496
17-03-17 18:08:26.518 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:08:26.518 -07 000000424 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.568 V. Piezo Error = -9.1 V.
17-03-17 18:08:26.518 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30621 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30622 (-136.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30616 (-136.2 uncal um), Max = 30626 (-136.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:08:26.518 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30621, posNoise = 5, negNoise = 5
17-03-17 18:08:26.518 -07 000000424 INF: Z Motor: After move to -0.137034, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:26.518 -07 000000424 INF: Z Motor: Settle wait time = 1421 ms, measure time = 158 ms (allowed 150 ms), total time = 1579 ms
17-03-17 18:08:26.518 -07 000000424 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-17 18:08:26.518 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1918 ms
17-03-17 18:08:26.518 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:26.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:26.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:26.518 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:26.518 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:26.518 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:26.518 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:26.528 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:26.528 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:26.528 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:26.528 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:26.538 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:08:26.538 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:08:26.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:26.568 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:26.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:26.588 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:26.788 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:26.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:26.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:26.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 18:08:26.818 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:26.828 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:26.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 18:08:26.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:08:26.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:26.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:08:26.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:08:26.928 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:26.928 -07 000000409 INF: Autofocus start
17-03-17 18:08:26.928 -07 000000409 INF: MeasureProfile start
17-03-17 18:08:26.928 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:26.938 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:26.938 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:26.948 -07 000000409 INF: MeasureProfile done
17-03-17 18:08:26.948 -07 000000409 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:08:26.948 -07 000000409 INF: Autofocus finished
17-03-17 18:08:27.138 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:27.138 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:08:27.138 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137039152003997. ----------
17-03-17 18:08:27.148 -07 000000610 INF: Cycle	9	Tile	11	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:27.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28442, sync = True, waitForSettling = True)
17-03-17 18:08:27.148 -07 000000610 INF: Z Motor: Moving to -0.130199 mm, started at -0.137039 mm, distance = 6.84 um
17-03-17 18:08:27.148 -07 000000610 INF: FPGA: Xmit ZDACW 28442\n [Z Motor]
17-03-17 18:08:27.148 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:08:27.158 -07 000000610 INF: FPGA: 'ZDACW 28442' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:27.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:27.158 -07 000000475 INF: FPGA: Recv ZDACR 28442
17-03-17 18:08:27.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:27.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:27.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:27.318 -07 000000409 INF: FPGA: Recv ZSGSRD 29559
17-03-17 18:08:27.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:27.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:27.328 -07 000000482 INF: FPGA: Recv ZSGSRD 29562
17-03-17 18:08:27.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:27.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:27.338 -07 000000458 INF: FPGA: Recv ZSGSRD 29552
17-03-17 18:08:27.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:27.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:27.348 -07 000000482 INF: FPGA: Recv ZSGSRD 29557
17-03-17 18:08:27.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:27.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:27.358 -07 000000458 INF: FPGA: Recv ZSGSRD 29558
17-03-17 18:08:27.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:27.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:27.368 -07 000000482 INF: FPGA: Recv ZSGSRD 29558
17-03-17 18:08:27.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:27.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:27.378 -07 000000409 INF: FPGA: Recv ZSGSRD 29555
17-03-17 18:08:27.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:27.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:27.388 -07 000000475 INF: FPGA: Recv ZSGSRD 29558
17-03-17 18:08:27.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:27.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:27.398 -07 000000482 INF: FPGA: Recv ZSGSRD 29562
17-03-17 18:08:27.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:27.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:27.408 -07 000000409 INF: FPGA: Recv ZSGSRD 29558
17-03-17 18:08:27.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:27.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:27.418 -07 000000547 INF: FPGA: Recv ZPIEZORD 25079
17-03-17 18:08:27.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:27.428 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.8 V.
17-03-17 18:08:27.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29558 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29558 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29552 (-129.4 uncal um), Max = 29562 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:08:27.428 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29558, posNoise = 4, negNoise = 6
17-03-17 18:08:27.428 -07 000000610 INF: Z Motor: After move to -0.130199, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:27.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:08:27.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:27.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:27.428 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:27.428 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:27.428 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:27.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:27.428 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:27.428 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:27.428 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:08:27.428 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:27.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:08:27.428 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:27.438 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:27.438 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:27.438 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:08:27.438 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:27.448 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:08:27.448 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:08:27.448 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:08:27.448 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:08:27.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28619 150\n [Camera]
17-03-17 18:08:27.648 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:28.038 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:28.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:28.038 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:28.048 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:28.048 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:08:28.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:28.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:28.048 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:28.048 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:28.048 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:08:28.228 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28619 776
17-03-17 18:08:28.378 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:28.418 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 363 ms.
17-03-17 18:08:28.418 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 363 ms.
17-03-17 18:08:28.418 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:28.418 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:28.418 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 18:08:28.418 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 18:08:28.418 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:28.418 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:28.418 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:08:28.428 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:08:28.568 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:28.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:28.568 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:28.568 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:28.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:28.578 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:28.578 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:28.578 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:08:28.578 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:28.628 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 18:08:28.758 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:08:28.758 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:28.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28619 150' command took 2 ms to send, 1308 ms to get response, and 1313 ms overall
17-03-17 18:08:28.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:28.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130210214497305. ------
17-03-17 18:08:28.768 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:28.768 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13680 mm
17-03-17 18:08:28.768 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:28.768 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:08:28.768 -07 000000478 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:08:28.778 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:28.958 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:08:28.958 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:08:28.958 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:28.958 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:28.968 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:08:28.978 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29885, sync = True, waitForSettling = False)
17-03-17 18:08:28.978 -07 000000547 INF: Z Motor: Moving to -0.136805 mm, started at -0.130210 mm, distance = -6.59 um
17-03-17 18:08:28.978 -07 000000547 INF: FPGA: Xmit ZDACW 29885\n [Z Motor]
17-03-17 18:08:29.008 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:08:29.008 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 426 ms.
17-03-17 18:08:29.008 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:29.008 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:08:29.008 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 434 ms.
17-03-17 18:08:29.018 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:29.018 -07 000000409 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:08:29.018 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 18:08:29.018 -07 000000547 INF: FPGA: 'ZDACW 29885' command took 0 ms to send, 33 ms to get response, and 37 ms overall
17-03-17 18:08:29.018 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:29.018 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 233 ms to get response, and 246 ms overall
17-03-17 18:08:29.018 -07 000000478 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:29.018 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 243 ms to get response, and 249 ms overall
17-03-17 18:08:29.018 -07 000000409 INF: FPGA: Recv ZDACR 29885
17-03-17 18:08:29.018 -07 000000478 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:29.018 -07 000000478 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:08:29.028 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:08:29.028 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:29.028 -07 000000547 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 18:08:29.038 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:29.238 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:29.238 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 217 ms overall
17-03-17 18:08:29.398 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 18:08:29.398 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 18:08:29.438 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:29.438 -07 000000480 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:08:29.448 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:29.448 -07 000000478 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:29.448 -07 000000478 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:08:29.448 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.837 mm, average velocity = 2.203 mm/sec
17-03-17 18:08:30.398 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:30.398 -07 000000547 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:08:30.408 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:30.408 -07 000000478 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:30.428 -07 000000478 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:30.428 -07 000000478 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:30.428 -07 000000478 INF: Y Motor: Moved to 69.0278 after 1653 ms (table move)
17-03-17 18:08:30.428 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136805 mm (DAC = 29885)
17-03-17 18:08:30.428 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:30.428 -07 000000409 INF: FPGA: Recv ZSGSRD 30582
17-03-17 18:08:30.438 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:08:30.438 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:30.438 -07 000000547 INF: FPGA: Recv ZSGSRD 30588
17-03-17 18:08:30.448 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:30.448 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:30.448 -07 000000480 INF: FPGA: Recv ZSGSRD 30577
17-03-17 18:08:30.458 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:30.458 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:30.458 -07 000000547 INF: FPGA: Recv ZSGSRD 30590
17-03-17 18:08:30.468 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:30.468 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:30.468 -07 000000409 INF: FPGA: Recv ZSGSRD 30582
17-03-17 18:08:30.478 -07 000000458 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:30.478 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:30.478 -07 000000547 INF: FPGA: Recv ZSGSRD 30583
17-03-17 18:08:30.488 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:30.488 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:30.488 -07 000000409 INF: FPGA: Recv ZSGSRD 30587
17-03-17 18:08:30.498 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:30.498 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:30.498 -07 000000480 INF: FPGA: Recv ZSGSRD 30576
17-03-17 18:08:30.508 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:30.508 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:30.508 -07 000000547 INF: FPGA: Recv ZSGSRD 30583
17-03-17 18:08:30.518 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:30.518 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:30.518 -07 000000480 INF: FPGA: Recv ZSGSRD 30585
17-03-17 18:08:30.528 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:30.528 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:30.528 -07 000000478 INF: FPGA: Recv ZPIEZORD 26457
17-03-17 18:08:30.538 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:30.538 -07 000000458 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.1 V.
17-03-17 18:08:30.538 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30583 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30583 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30576 (-136.0 uncal um), Max = 30590 (-136.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:08:30.538 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30583, posNoise = 7, negNoise = 7
17-03-17 18:08:30.538 -07 000000458 INF: Z Motor: After move to -0.136805, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:30.538 -07 000000458 INF: Z Motor: Settle wait time = 1448 ms, measure time = 106 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:08:30.538 -07 000000458 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:30.588 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1815 ms
17-03-17 18:08:30.588 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:30.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:30.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:30.588 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:30.588 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:30.588 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:30.588 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:30.588 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:08:30.588 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:30.598 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:30.598 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:30.598 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:08:30.598 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:08:30.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:30.648 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:30.848 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:30.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:30.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:30.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:08:30.888 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:30.888 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:30.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:08:30.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:08:30.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:30.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:08:30.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:08:30.988 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:30.988 -07 000000547 INF: Autofocus start
17-03-17 18:08:30.988 -07 000000547 INF: MeasureProfile start
17-03-17 18:08:30.988 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:30.998 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:30.998 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:31.008 -07 000000547 INF: MeasureProfile done
17-03-17 18:08:31.008 -07 000000547 INF: X=-6  Z correction [um]=-0.03260989
17-03-17 18:08:31.008 -07 000000547 INF: Autofocus finished
17-03-17 18:08:31.198 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:31.198 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:31.198 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.13679503194261. ----------
17-03-17 18:08:31.198 -07 000000610 INF: Cycle	9	Tile	12	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:31.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28390, sync = True, waitForSettling = True)
17-03-17 18:08:31.208 -07 000000610 INF: Z Motor: Moving to -0.129961 mm, started at -0.136795 mm, distance = 6.83 um
17-03-17 18:08:31.208 -07 000000610 INF: FPGA: Xmit ZDACW 28390\n [Z Motor]
17-03-17 18:08:31.208 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 18:08:31.218 -07 000000610 INF: FPGA: 'ZDACW 28390' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:08:31.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:31.218 -07 000000462 INF: FPGA: Recv ZDACR 28390
17-03-17 18:08:31.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:31.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:31.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:31.378 -07 000000478 INF: FPGA: Recv ZSGSRD 29519
17-03-17 18:08:31.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:31.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:31.388 -07 000000547 INF: FPGA: Recv ZSGSRD 29525
17-03-17 18:08:31.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:31.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:31.398 -07 000000547 INF: FPGA: Recv ZSGSRD 29518
17-03-17 18:08:31.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:31.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:31.408 -07 000000626 INF: FPGA: Recv ZSGSRD 29520
17-03-17 18:08:31.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:31.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:31.418 -07 000000478 INF: FPGA: Recv ZSGSRD 29516
17-03-17 18:08:31.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:31.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:31.428 -07 000000626 INF: FPGA: Recv ZSGSRD 29521
17-03-17 18:08:31.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:31.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:31.438 -07 000000409 INF: FPGA: Recv ZSGSRD 29522
17-03-17 18:08:31.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:31.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:31.448 -07 000000626 INF: FPGA: Recv ZSGSRD 29518
17-03-17 18:08:31.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:31.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:31.458 -07 000000409 INF: FPGA: Recv ZSGSRD 29520
17-03-17 18:08:31.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:31.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:31.468 -07 000000626 INF: FPGA: Recv ZSGSRD 29521
17-03-17 18:08:31.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:31.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:31.488 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.024884,
17-03-17 18:08:31.488 -07 000000478 INF: FPGA: Recv ZPIEZORD 25080
17-03-17 18:08:31.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:08:31.498 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -9.7 V.
17-03-17 18:08:31.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29520 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29520 (-129.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29516 (-129.2 uncal um), Max = 29525 (-129.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:08:31.498 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29520, posNoise = 5, negNoise = 4
17-03-17 18:08:31.498 -07 000000610 INF: Z Motor: After move to -0.129961, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:31.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 18:08:31.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:31.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:31.498 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:31.498 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:31.498 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:31.498 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:31.498 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:31.498 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:31.498 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:31.498 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:31.498 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:31.498 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:31.508 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:31.508 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:31.508 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:08:31.508 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:31.518 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:08:31.518 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:08:31.518 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:08:31.518 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:08:31.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28567 150\n [Camera]
17-03-17 18:08:31.568 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:31.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:31.728 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:32.128 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:32.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:32.128 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:32.128 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:32.128 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 18:08:32.128 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:32.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:32.128 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:32.128 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:32.128 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 18:08:32.318 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28567 776
17-03-17 18:08:32.468 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:32.498 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:08:32.498 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:08:32.498 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:32.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:08:32.508 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:08:32.508 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:32.508 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:32.508 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:08:32.508 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:32.518 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:08:32.658 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:32.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:32.658 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:32.658 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:32.658 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 18:08:32.658 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:32.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:32.658 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:32.658 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:32.658 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:08:32.848 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:08:32.848 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:32.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28567 150' command took 2 ms to send, 1304 ms to get response, and 1329 ms overall
17-03-17 18:08:32.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:32.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.129966094435918. ------
17-03-17 18:08:32.848 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:32.848 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13638 mm
17-03-17 18:08:32.848 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:32.858 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:08:32.858 -07 000000429 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:08:32.858 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:32.858 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:32.858 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:08:32.858 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29793, sync = True, waitForSettling = False)
17-03-17 18:08:32.858 -07 000000480 INF: Z Motor: Moving to -0.136384 mm, started at -0.129966 mm, distance = -6.42 um
17-03-17 18:08:32.858 -07 000000547 INF: FPGA: Recv YRDPOS 141370
17-03-17 18:08:32.868 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:32.868 -07 000000429 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:32.868 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:32.868 -07 000000429 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:32.868 -07 000000429 INF: Y Motor: Moving 1351 steps-30
17-03-17 18:08:32.878 -07 000000480 INF: FPGA: Xmit ZDACW 29793\n [Z Motor]
17-03-17 18:08:32.878 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 18:08:32.888 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:32.888 -07 000000480 INF: FPGA: 'ZDACW 29793' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:08:32.898 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:32.898 -07 000000409 INF: FPGA: Recv ZDACR 29793
17-03-17 18:08:32.908 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:08:32.908 -07 000000480 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 18:08:33.038 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:08:33.038 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:08:33.038 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:33.038 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:08:33.038 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:08:33.038 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:33.038 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:33.048 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:08:33.048 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:08:33.048 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:08:33.068 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:33.068 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 18:08:33.258 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 18:08:33.258 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:08:33.298 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:33.298 -07 000000501 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:08:33.308 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:33.308 -07 000000429 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:33.308 -07 000000429 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:08:33.308 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 18:08:34.258 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:34.258 -07 000000459 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:08:34.268 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:34.268 -07 000000429 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:34.278 -07 000000429 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:34.278 -07 000000429 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:08:34.278 -07 000000429 INF: Y Motor: Moved to 69.8643 after 1428 ms (table move)
17-03-17 18:08:34.288 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136384 mm (DAC = 29793)
17-03-17 18:08:34.288 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:34.288 -07 000000459 INF: FPGA: Recv ZSGSRD 30529
17-03-17 18:08:34.298 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:08:34.298 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:34.298 -07 000000501 INF: FPGA: Recv ZSGSRD 30521
17-03-17 18:08:34.308 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:34.308 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:34.308 -07 000000429 INF: FPGA: Recv ZSGSRD 30509
17-03-17 18:08:34.318 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:34.318 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:34.318 -07 000000459 INF: FPGA: Recv ZSGSRD 30525
17-03-17 18:08:34.328 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:34.328 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:34.328 -07 000000459 INF: FPGA: Recv ZSGSRD 30521
17-03-17 18:08:34.338 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:34.338 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:34.338 -07 000000429 INF: FPGA: Recv ZSGSRD 30523
17-03-17 18:08:34.348 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:34.348 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:34.348 -07 000000459 INF: FPGA: Recv ZSGSRD 30524
17-03-17 18:08:34.358 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:34.358 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:34.358 -07 000000576 INF: FPGA: Recv ZSGSRD 30514
17-03-17 18:08:34.368 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:34.368 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:34.368 -07 000000429 INF: FPGA: Recv ZSGSRD 30517
17-03-17 18:08:34.378 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:34.378 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:34.378 -07 000000459 INF: FPGA: Recv ZSGSRD 30520
17-03-17 18:08:34.388 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:34.388 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:34.388 -07 000000459 INF: FPGA: Recv ZPIEZORD 26392
17-03-17 18:08:34.398 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:34.398 -07 000000476 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -9.1 V.
17-03-17 18:08:34.398 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30520 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30521 (-135.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30509 (-135.5 uncal um), Max = 30529 (-135.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:08:34.398 -07 000000476 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30520, posNoise = 9, negNoise = 11
17-03-17 18:08:34.398 -07 000000476 INF: Z Motor: After move to -0.136384, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:34.398 -07 000000476 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-17 18:08:34.398 -07 000000476 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:34.448 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 18:08:34.448 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:34.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:34.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:34.448 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:34.448 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:34.448 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:34.448 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:34.448 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:08:34.448 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:34.458 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:34.458 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:34.468 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:08:34.468 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:08:34.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:34.518 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:34.718 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:34.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:34.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:34.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2508048144, 0x0, 559484976) start.
17-03-17 18:08:34.758 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:34.758 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:34.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:08:34.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2508048144, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:08:34.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:34.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:08:34.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:08:34.858 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:34.858 -07 000000576 INF: Autofocus start
17-03-17 18:08:34.858 -07 000000576 INF: MeasureProfile start
17-03-17 18:08:34.858 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:34.868 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:34.868 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:34.868 -07 000000576 INF: MeasureProfile done
17-03-17 18:08:34.868 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:08:34.868 -07 000000576 INF: Autofocus finished
17-03-17 18:08:35.068 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:35.068 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:35.068 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.136390306577679. ----------
17-03-17 18:08:35.068 -07 000000610 INF: Cycle	9	Tile	13	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:35.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28300, sync = True, waitForSettling = True)
17-03-17 18:08:35.078 -07 000000610 INF: Z Motor: Moving to -0.129549 mm, started at -0.136390 mm, distance = 6.84 um
17-03-17 18:08:35.078 -07 000000610 INF: FPGA: Xmit ZDACW 28300\n [Z Motor]
17-03-17 18:08:35.078 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:08:35.088 -07 000000610 INF: FPGA: 'ZDACW 28300' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:35.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:35.088 -07 000000459 INF: FPGA: Recv ZDACR 28300
17-03-17 18:08:35.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:35.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:35.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:35.248 -07 000000429 INF: FPGA: Recv ZSGSRD 29456
17-03-17 18:08:35.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:35.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:35.258 -07 000000501 INF: FPGA: Recv ZSGSRD 29457
17-03-17 18:08:35.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:35.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:35.268 -07 000000501 INF: FPGA: Recv ZSGSRD 29456
17-03-17 18:08:35.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:35.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:35.278 -07 000000476 INF: FPGA: Recv ZSGSRD 29454
17-03-17 18:08:35.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:35.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:35.288 -07 000000429 INF: FPGA: Recv ZSGSRD 29449
17-03-17 18:08:35.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:35.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:35.298 -07 000000476 INF: FPGA: Recv ZSGSRD 29456
17-03-17 18:08:35.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:35.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:35.308 -07 000000459 INF: FPGA: Recv ZSGSRD 29453
17-03-17 18:08:35.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:35.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:35.318 -07 000000576 INF: FPGA: Recv ZSGSRD 29455
17-03-17 18:08:35.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:35.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:35.328 -07 000000429 INF: FPGA: Recv ZSGSRD 29451
17-03-17 18:08:35.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:35.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:35.338 -07 000000459 INF: FPGA: Recv ZSGSRD 29457
17-03-17 18:08:35.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:35.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:35.348 -07 000000459 INF: FPGA: Recv ZPIEZORD 25016
17-03-17 18:08:35.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:35.358 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -9.7 V.
17-03-17 18:08:35.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29454 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29456 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29449 (-128.7 uncal um), Max = 29457 (-128.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:08:35.358 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29454, posNoise = 3, negNoise = 5
17-03-17 18:08:35.358 -07 000000610 INF: Z Motor: After move to -0.129549, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:35.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:08:35.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:35.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:35.358 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:35.358 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:35.358 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:35.358 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:35.358 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:35.358 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:35.358 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:35.358 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:35.358 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:35.358 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:35.368 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:35.368 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:35.368 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:08:35.368 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:35.378 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:08:35.378 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:08:35.378 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:08:35.378 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:08:35.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28477 150\n [Camera]
17-03-17 18:08:35.578 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:35.968 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:35.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:35.968 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:35.968 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:35.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:08:35.968 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:35.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:35.968 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:35.968 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:35.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:08:36.158 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28477 776
17-03-17 18:08:36.308 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 18:08:36.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:08:36.348 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:08:36.348 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:36.348 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:08:36.348 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:08:36.348 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:36.348 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:08:36.348 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:08:36.348 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:08:36.358 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:08:36.498 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:36.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:36.498 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:36.498 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:36.498 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 18:08:36.498 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:36.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:36.498 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:36.498 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:36.498 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 18:08:36.568 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:36.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:36.688 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:08:36.688 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:36.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28477 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 18:08:36.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:36.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.129542096434562. ------
17-03-17 18:08:36.698 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13592 mm
17-03-17 18:08:36.698 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:36.698 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:36.698 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:36.698 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:08:36.698 -07 000000429 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 18:08:36.698 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29692, sync = True, waitForSettling = False)
17-03-17 18:08:36.698 -07 000000431 INF: Z Motor: Moving to -0.135921 mm, started at -0.129542 mm, distance = -6.38 um
17-03-17 18:08:36.708 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:36.708 -07 000000431 INF: FPGA: Xmit ZDACW 29692\n [Z Motor]
17-03-17 18:08:36.708 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:08:36.718 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:36.718 -07 000000431 INF: FPGA: 'ZDACW 29692' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:08:36.718 -07 000000409 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:08:36.728 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:36.728 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:08:36.728 -07 000000429 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:36.728 -07 000000429 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:36.728 -07 000000429 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:08:36.738 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:36.738 -07 000000476 INF: FPGA: Recv ZDACR 29692
17-03-17 18:08:36.748 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:36.748 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:08:36.748 -07 000000431 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:08:36.878 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.004458,
17-03-17 18:08:36.888 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:08:36.888 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:08:36.888 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:36.898 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:08:36.898 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:08:36.898 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:36.898 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 11 ms.
17-03-17 18:08:36.898 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:08:36.898 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:36.908 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 18:08:36.928 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:36.928 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-17 18:08:37.118 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:08:37.118 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:08:37.158 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:37.158 -07 000000459 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:08:37.168 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:37.168 -07 000000429 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:37.168 -07 000000429 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:08:37.168 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.112 mm/sec
17-03-17 18:08:38.118 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:38.118 -07 000000576 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:08:38.128 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:38.128 -07 000000429 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:38.148 -07 000000429 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:38.148 -07 000000429 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:38.148 -07 000000429 INF: Y Motor: Moved to 70.6890 after 1443 ms (table move)
17-03-17 18:08:38.148 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135921 mm (DAC = 29692)
17-03-17 18:08:38.148 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:38.148 -07 000000576 INF: FPGA: Recv ZSGSRD 30447
17-03-17 18:08:38.158 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:08:38.158 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:38.158 -07 000000429 INF: FPGA: Recv ZSGSRD 30440
17-03-17 18:08:38.168 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:38.168 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:38.168 -07 000000476 INF: FPGA: Recv ZSGSRD 30449
17-03-17 18:08:38.178 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:38.178 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:38.178 -07 000000476 INF: FPGA: Recv ZSGSRD 30450
17-03-17 18:08:38.188 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:38.188 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:38.188 -07 000000476 INF: FPGA: Recv ZSGSRD 30451
17-03-17 18:08:38.198 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:38.198 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:38.198 -07 000000476 INF: FPGA: Recv ZSGSRD 30451
17-03-17 18:08:38.208 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:38.208 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:38.208 -07 000000409 INF: FPGA: Recv ZSGSRD 30443
17-03-17 18:08:38.218 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:38.218 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:38.218 -07 000000576 INF: FPGA: Recv ZSGSRD 30461
17-03-17 18:08:38.228 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:38.228 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:38.228 -07 000000409 INF: FPGA: Recv ZSGSRD 30445
17-03-17 18:08:38.238 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:38.238 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:38.238 -07 000000476 INF: FPGA: Recv ZSGSRD 30443
17-03-17 18:08:38.248 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:38.248 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:38.248 -07 000000476 INF: FPGA: Recv ZPIEZORD 26336
17-03-17 18:08:38.258 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:38.258 -07 000000623 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.531 V. Piezo Error = -9.0 V.
17-03-17 18:08:38.258 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30448 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30448 (-135.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30440 (-135.1 uncal um), Max = 30461 (-135.2 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:08:38.258 -07 000000623 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30448, posNoise = 13, negNoise = 8
17-03-17 18:08:38.258 -07 000000623 INF: Z Motor: After move to -0.135921, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:38.258 -07 000000623 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:08:38.258 -07 000000623 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:38.308 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 18:08:38.308 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:38.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:38.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:38.308 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:38.318 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:38.318 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:38.318 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:38.318 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:08:38.318 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:38.318 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:38.318 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:38.328 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:08:38.328 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:08:38.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:38.378 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:38.578 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:38.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:38.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:38.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 18:08:38.618 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:38.618 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:38.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:08:38.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 18:08:38.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:38.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:08:38.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:08:38.718 -07 000000476 INF: Autofocus start
17-03-17 18:08:38.718 -07 000000476 INF: MeasureProfile start
17-03-17 18:08:38.718 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:38.718 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:38.728 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:08:38.728 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:38.728 -07 000000476 INF: MeasureProfile done
17-03-17 18:08:38.728 -07 000000476 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:08:38.728 -07 000000476 INF: Autofocus finished
17-03-17 18:08:38.928 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:38.928 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:38.928 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.135927763303473. ----------
17-03-17 18:08:38.928 -07 000000610 INF: Cycle	9	Tile	14	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:38.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28216, sync = True, waitForSettling = True)
17-03-17 18:08:38.938 -07 000000610 INF: Z Motor: Moving to -0.129165 mm, started at -0.135928 mm, distance = 6.76 um
17-03-17 18:08:38.938 -07 000000610 INF: FPGA: Xmit ZDACW 28216\n [Z Motor]
17-03-17 18:08:38.938 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 18:08:38.948 -07 000000610 INF: FPGA: 'ZDACW 28216' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:38.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:38.948 -07 000000409 INF: FPGA: Recv ZDACR 28216
17-03-17 18:08:38.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:38.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:39.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:39.108 -07 000000409 INF: FPGA: Recv ZSGSRD 29396
17-03-17 18:08:39.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:39.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:39.118 -07 000000409 INF: FPGA: Recv ZSGSRD 29403
17-03-17 18:08:39.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:39.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:39.128 -07 000000623 INF: FPGA: Recv ZSGSRD 29395
17-03-17 18:08:39.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:39.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:39.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29394
17-03-17 18:08:39.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:39.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:39.148 -07 000000476 INF: FPGA: Recv ZSGSRD 29398
17-03-17 18:08:39.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:39.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:39.158 -07 000000623 INF: FPGA: Recv ZSGSRD 29396
17-03-17 18:08:39.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:39.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:39.168 -07 000000409 INF: FPGA: Recv ZSGSRD 29396
17-03-17 18:08:39.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:39.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:39.178 -07 000000409 INF: FPGA: Recv ZSGSRD 29395
17-03-17 18:08:39.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:39.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:39.188 -07 000000576 INF: FPGA: Recv ZSGSRD 29399
17-03-17 18:08:39.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:39.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:39.198 -07 000000409 INF: FPGA: Recv ZSGSRD 29398
17-03-17 18:08:39.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:39.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:39.208 -07 000000576 INF: FPGA: Recv ZPIEZORD 24933
17-03-17 18:08:39.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:39.218 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.305 V. Piezo Error = -9.8 V.
17-03-17 18:08:39.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29397 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29396 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29394 (-128.4 uncal um), Max = 29403 (-128.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:08:39.218 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29397, posNoise = 6, negNoise = 3
17-03-17 18:08:39.218 -07 000000610 INF: Z Motor: After move to -0.129165, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:39.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:08:39.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:39.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:39.218 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:39.218 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:39.218 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:39.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:39.218 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:39.218 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:39.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:39.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:39.218 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:39.218 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:39.228 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:39.228 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:39.228 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:08:39.228 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:39.238 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:08:39.238 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:08:39.238 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:08:39.238 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:08:39.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28393 150\n [Camera]
17-03-17 18:08:39.438 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:39.828 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:39.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:39.838 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:39.838 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:39.838 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 18:08:39.838 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:39.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:39.838 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:39.838 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:39.838 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 18:08:40.028 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28393 776
17-03-17 18:08:40.178 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:40.238 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:08:40.238 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:08:40.238 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:40.238 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:08:40.238 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:08:40.238 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:40.238 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:40.238 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:08:40.238 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:08:40.248 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:08:40.368 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:40.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:40.368 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:40.368 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:40.368 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 18:08:40.368 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:40.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:40.368 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:40.368 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:40.368 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 18:08:40.558 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:08:40.558 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:40.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28393 150' command took 2 ms to send, 1302 ms to get response, and 1313 ms overall
17-03-17 18:08:40.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:40.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129175916342482. ------
17-03-17 18:08:40.558 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:40.558 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13579 mm
17-03-17 18:08:40.558 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:40.568 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:08:40.568 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29663, sync = True, waitForSettling = False)
17-03-17 18:08:40.568 -07 000000623 INF: Z Motor: Moving to -0.135789 mm, started at -0.129176 mm, distance = -6.61 um
17-03-17 18:08:40.568 -07 000000623 INF: FPGA: Xmit ZDACW 29663\n [Z Motor]
17-03-17 18:08:40.568 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:40.568 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:08:40.568 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 18:08:40.568 -07 000000547 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:08:40.578 -07 000000623 INF: FPGA: 'ZDACW 29663' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:40.578 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:40.578 -07 000000458 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:08:40.588 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:08:40.588 -07 000000547 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:40.588 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:40.588 -07 000000547 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:40.588 -07 000000547 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:08:40.598 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:40.598 -07 000000431 INF: FPGA: Recv ZDACR 29663
17-03-17 18:08:40.608 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:08:40.608 -07 000000623 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:08:40.608 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:40.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:08:40.768 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:08:40.768 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:40.768 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:08:40.768 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:08:40.768 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:40.778 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:40.778 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:08:40.778 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:08:40.778 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:08:40.788 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:40.788 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 219 ms overall
17-03-17 18:08:40.988 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:08:40.988 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 396 ms overall
17-03-17 18:08:41.018 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:41.018 -07 000000476 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:08:41.028 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:08:41.028 -07 000000547 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:41.028 -07 000000547 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:08:41.028 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.844 mm, average velocity = 2.130 mm/sec
17-03-17 18:08:41.568 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:41.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:41.978 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:41.978 -07 000000626 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:08:41.988 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:41.988 -07 000000547 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:41.998 -07 000000547 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:42.008 -07 000000547 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:42.008 -07 000000547 INF: Y Motor: Moved to 71.5195 after 1440 ms (table move)
17-03-17 18:08:42.008 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135789 mm (DAC = 29663)
17-03-17 18:08:42.008 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:42.008 -07 000000480 INF: FPGA: Recv ZSGSRD 30431
17-03-17 18:08:42.018 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:08:42.018 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:42.018 -07 000000569 INF: FPGA: Recv ZSGSRD 30427
17-03-17 18:08:42.028 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.028 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:42.028 -07 000000626 INF: FPGA: Recv ZSGSRD 30430
17-03-17 18:08:42.038 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.038 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:42.038 -07 000000429 INF: FPGA: Recv ZSGSRD 30421
17-03-17 18:08:42.048 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.048 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:42.048 -07 000000478 INF: FPGA: Recv ZSGSRD 30422
17-03-17 18:08:42.058 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.058 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:42.058 -07 000000431 INF: FPGA: Recv ZSGSRD 30430
17-03-17 18:08:42.068 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.068 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:42.068 -07 000000482 INF: FPGA: Recv ZSGSRD 30430
17-03-17 18:08:42.078 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.078 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:42.078 -07 000000475 INF: FPGA: Recv ZSGSRD 30430
17-03-17 18:08:42.088 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.088 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:42.088 -07 000000576 INF: FPGA: Recv ZSGSRD 30433
17-03-17 18:08:42.098 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.098 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:42.098 -07 000000476 INF: FPGA: Recv ZSGSRD 30428
17-03-17 18:08:42.108 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.108 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:42.108 -07 000000462 INF: FPGA: Recv ZPIEZORD 26315
17-03-17 18:08:42.118 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.118 -07 000000409 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.526 V. Piezo Error = -9.0 V.
17-03-17 18:08:42.118 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30428 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30430 (-135.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30421 (-135.0 uncal um), Max = 30433 (-135.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:08:42.118 -07 000000409 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30428, posNoise = 5, negNoise = 7
17-03-17 18:08:42.118 -07 000000409 INF: Z Motor: After move to -0.135789, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:42.118 -07 000000409 INF: Z Motor: Settle wait time = 1443 ms, measure time = 106 ms (allowed 150 ms), total time = 1549 ms
17-03-17 18:08:42.118 -07 000000409 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:42.168 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:08:42.168 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:42.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:42.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:42.168 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:42.168 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:42.168 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:42.168 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:42.168 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:42.168 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:42.178 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:42.178 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:42.188 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:08:42.188 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:08:42.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:42.238 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:42.258 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 3.993549,
17-03-17 18:08:42.438 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:42.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:42.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:42.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 18:08:42.478 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:42.478 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:42.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:08:42.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:08:42.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:42.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:08:42.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:08:42.578 -07 000000569 INF: Autofocus start
17-03-17 18:08:42.578 -07 000000569 INF: MeasureProfile start
17-03-17 18:08:42.588 -07 000000569 INF: MeasureProfile done
17-03-17 18:08:42.588 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:08:42.588 -07 000000569 INF: Autofocus finished
17-03-17 18:08:42.598 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:42.598 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:42.608 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:08:42.618 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:42.818 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:42.818 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 18:08:42.818 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.135799279060637. ----------
17-03-17 18:08:42.818 -07 000000610 INF: Cycle	9	Tile	15	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:42.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28187, sync = True, waitForSettling = True)
17-03-17 18:08:42.828 -07 000000610 INF: Z Motor: Moving to -0.129032 mm, started at -0.135799 mm, distance = 6.77 um
17-03-17 18:08:42.828 -07 000000610 INF: FPGA: Xmit ZDACW 28187\n [Z Motor]
17-03-17 18:08:42.828 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:08:42.838 -07 000000610 INF: FPGA: 'ZDACW 28187' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:42.838 -07 000000409 INF: FPGA: Recv ZDACR 28187
17-03-17 18:08:42.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:42.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:42.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:42.998 -07 000000429 INF: FPGA: Recv ZSGSRD 29377
17-03-17 18:08:43.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:43.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:43.008 -07 000000429 INF: FPGA: Recv ZSGSRD 29376
17-03-17 18:08:43.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:43.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:43.018 -07 000000429 INF: FPGA: Recv ZSGSRD 29373
17-03-17 18:08:43.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:43.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:43.028 -07 000000482 INF: FPGA: Recv ZSGSRD 29375
17-03-17 18:08:43.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:43.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:43.038 -07 000000429 INF: FPGA: Recv ZSGSRD 29381
17-03-17 18:08:43.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:43.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:43.048 -07 000000482 INF: FPGA: Recv ZSGSRD 29373
17-03-17 18:08:43.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:43.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:43.058 -07 000000482 INF: FPGA: Recv ZSGSRD 29374
17-03-17 18:08:43.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:43.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:43.068 -07 000000409 INF: FPGA: Recv ZSGSRD 29381
17-03-17 18:08:43.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:43.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:43.078 -07 000000569 INF: FPGA: Recv ZSGSRD 29377
17-03-17 18:08:43.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:43.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:43.088 -07 000000409 INF: FPGA: Recv ZSGSRD 29372
17-03-17 18:08:43.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:43.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:43.098 -07 000000569 INF: FPGA: Recv ZPIEZORD 24936
17-03-17 18:08:43.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:43.108 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.7 V.
17-03-17 18:08:43.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29376 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29376 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29372 (-128.2 uncal um), Max = 29381 (-128.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:08:43.108 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29376, posNoise = 5, negNoise = 4
17-03-17 18:08:43.108 -07 000000610 INF: Z Motor: After move to -0.129032, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:43.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:08:43.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:43.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:43.108 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:43.108 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:43.108 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:43.108 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:43.108 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:43.108 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:43.108 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:43.108 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:43.108 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:43.108 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:43.108 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:08:43.108 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:43.118 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:08:43.118 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:43.128 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:08:43.128 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:08:43.128 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:08:43.128 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:08:43.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28364 150\n [Camera]
17-03-17 18:08:43.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:43.718 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:43.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:43.728 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:43.728 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:43.728 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 18:08:43.728 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:43.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:43.728 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:43.728 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:43.728 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 18:08:43.918 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28364 776
17-03-17 18:08:44.068 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:44.098 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:08:44.098 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:08:44.098 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:44.108 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:44.108 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:08:44.108 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:08:44.108 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:08:44.108 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:44.118 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:44.128 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:08:44.258 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:44.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:44.258 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:44.378 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:44.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:44.378 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:44.378 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:44.378 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 18:08:44.388 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:44.388 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:08:44.448 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:08:44.448 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:44.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28364 150' command took 2 ms to send, 1305 ms to get response, and 1317 ms overall
17-03-17 18:08:44.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:44.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129041007887505. ------
17-03-17 18:08:44.458 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:44.458 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13509 mm
17-03-17 18:08:44.458 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:44.458 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:44.458 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:08:44.458 -07 000000478 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 18:08:44.458 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29510, sync = True, waitForSettling = False)
17-03-17 18:08:44.458 -07 000000547 INF: Z Motor: Moving to -0.135088 mm, started at -0.129041 mm, distance = -6.05 um
17-03-17 18:08:44.468 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:08:44.468 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:44.468 -07 000000459 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:08:44.478 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:08:44.478 -07 000000478 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:44.478 -07 000000547 INF: FPGA: Xmit ZDACW 29510\n [Z Motor]
17-03-17 18:08:44.478 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 18:08:44.478 -07 000000478 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:44.478 -07 000000478 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:08:44.488 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:44.488 -07 000000547 INF: FPGA: 'ZDACW 29510' command took 2 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:08:44.498 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:44.508 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:44.508 -07 000000459 INF: FPGA: Recv ZDACR 29510
17-03-17 18:08:44.518 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:08:44.518 -07 000000547 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:08:44.688 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:44.688 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:08:44.778 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:08:44.778 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:08:44.778 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:44.788 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:08:44.788 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:08:44.788 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:44.788 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:44.788 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:44.788 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-17 18:08:44.788 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:08:44.868 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 18:08:44.868 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:08:44.908 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:44.908 -07 000000576 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:08:44.918 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:44.918 -07 000000478 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:44.918 -07 000000478 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:08:44.918 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.151 mm/sec
17-03-17 18:08:45.868 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:45.868 -07 000000623 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:08:45.878 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:45.878 -07 000000478 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:45.888 -07 000000478 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:45.898 -07 000000478 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:45.898 -07 000000478 INF: Y Motor: Moved to 72.3501 after 1433 ms (table move)
17-03-17 18:08:45.898 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135088 mm (DAC = 29510)
17-03-17 18:08:45.898 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:45.898 -07 000000547 INF: FPGA: Recv ZSGSRD 30318
17-03-17 18:08:45.908 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:45.908 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:45.908 -07 000000547 INF: FPGA: Recv ZSGSRD 30313
17-03-17 18:08:45.918 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:45.918 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:45.918 -07 000000475 INF: FPGA: Recv ZSGSRD 30313
17-03-17 18:08:45.928 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:45.928 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:45.928 -07 000000475 INF: FPGA: Recv ZSGSRD 30312
17-03-17 18:08:45.938 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:45.938 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:45.938 -07 000000475 INF: FPGA: Recv ZSGSRD 30315
17-03-17 18:08:45.948 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:45.948 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:45.948 -07 000000475 INF: FPGA: Recv ZSGSRD 30325
17-03-17 18:08:45.958 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:45.958 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:45.958 -07 000000475 INF: FPGA: Recv ZSGSRD 30323
17-03-17 18:08:45.968 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:45.968 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:45.968 -07 000000475 INF: FPGA: Recv ZSGSRD 30318
17-03-17 18:08:45.978 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:45.978 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:45.978 -07 000000458 INF: FPGA: Recv ZSGSRD 30323
17-03-17 18:08:45.988 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:45.988 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:45.988 -07 000000458 INF: FPGA: Recv ZSGSRD 30315
17-03-17 18:08:45.998 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:45.998 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:45.998 -07 000000409 INF: FPGA: Recv ZPIEZORD 26204
17-03-17 18:08:46.008 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:46.008 -07 000000476 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.503 V. Piezo Error = -9.1 V.
17-03-17 18:08:46.008 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30318 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30316 (-134.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30312 (-134.3 uncal um), Max = 30325 (-134.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:08:46.008 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30318, posNoise = 7, negNoise = 6
17-03-17 18:08:46.008 -07 000000476 INF: Z Motor: After move to -0.135088, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:46.008 -07 000000476 INF: Z Motor: Settle wait time = 1436 ms, measure time = 108 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:08:46.008 -07 000000476 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:46.058 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 18:08:46.058 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:46.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:46.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:46.058 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:46.058 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:46.058 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:46.058 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:46.058 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:08:46.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:46.068 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:46.068 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:46.078 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:08:46.078 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:08:46.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:46.118 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:46.318 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:46.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:46.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:46.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 18:08:46.358 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:46.358 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:46.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 18:08:46.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:08:46.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:46.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:08:46.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:08:46.558 -07 000000569 INF: Autofocus start
17-03-17 18:08:46.558 -07 000000569 INF: MeasureProfile start
17-03-17 18:08:46.558 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:46.558 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:46.568 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:08:46.568 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:46.568 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:46.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:46.568 -07 000000569 INF: MeasureProfile done
17-03-17 18:08:46.568 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:08:46.568 -07 000000569 INF: Autofocus finished
17-03-17 18:08:46.768 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:46.768 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:46.768 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135092615725044. ----------
17-03-17 18:08:46.768 -07 000000610 INF: Cycle	9	Tile	16	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:46.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28018, sync = True, waitForSettling = True)
17-03-17 18:08:46.778 -07 000000610 INF: Z Motor: Moving to -0.128258 mm, started at -0.135093 mm, distance = 6.83 um
17-03-17 18:08:46.778 -07 000000610 INF: FPGA: Xmit ZDACW 28018\n [Z Motor]
17-03-17 18:08:46.778 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:08:46.788 -07 000000610 INF: FPGA: 'ZDACW 28018' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:46.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:46.788 -07 000000547 INF: FPGA: Recv ZDACR 28018
17-03-17 18:08:46.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:46.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:46.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:46.948 -07 000000458 INF: FPGA: Recv ZSGSRD 29256
17-03-17 18:08:46.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:46.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:46.958 -07 000000482 INF: FPGA: Recv ZSGSRD 29255
17-03-17 18:08:46.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:46.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:46.968 -07 000000429 INF: FPGA: Recv ZSGSRD 29252
17-03-17 18:08:46.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:46.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:46.978 -07 000000482 INF: FPGA: Recv ZSGSRD 29253
17-03-17 18:08:46.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:46.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:46.988 -07 000000458 INF: FPGA: Recv ZSGSRD 29261
17-03-17 18:08:46.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:46.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:46.998 -07 000000482 INF: FPGA: Recv ZSGSRD 29252
17-03-17 18:08:47.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:47.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:47.008 -07 000000458 INF: FPGA: Recv ZSGSRD 29250
17-03-17 18:08:47.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:47.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:47.018 -07 000000482 INF: FPGA: Recv ZSGSRD 29253
17-03-17 18:08:47.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:08:47.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:47.028 -07 000000458 INF: FPGA: Recv ZSGSRD 29249
17-03-17 18:08:47.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:47.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:47.038 -07 000000482 INF: FPGA: Recv ZSGSRD 29255
17-03-17 18:08:47.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:47.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:47.048 -07 000000482 INF: FPGA: Recv ZPIEZORD 24823
17-03-17 18:08:47.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:47.058 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.275 V. Piezo Error = -9.7 V.
17-03-17 18:08:47.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29254 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29253 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29249 (-127.5 uncal um), Max = 29261 (-127.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:08:47.058 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29254, posNoise = 7, negNoise = 5
17-03-17 18:08:47.058 -07 000000610 INF: Z Motor: After move to -0.128258, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:47.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:08:47.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:47.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:47.058 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:47.058 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:47.058 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:47.058 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:47.058 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:47.058 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:47.058 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:47.058 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:47.058 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:47.058 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:47.068 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:47.068 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:47.068 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:08:47.068 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:47.078 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:08:47.078 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:08:47.078 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:08:47.078 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:08:47.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28194 150\n [Camera]
17-03-17 18:08:47.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:47.618 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.016692,
17-03-17 18:08:47.668 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:47.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:47.668 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:47.668 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:47.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:47.668 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:47.668 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:47.668 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) start.
17-03-17 18:08:47.678 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:47.678 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) start.
17-03-17 18:08:47.858 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28194 776
17-03-17 18:08:48.008 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:48.068 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:08:48.068 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:08:48.068 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:48.068 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:08:48.068 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:08:48.068 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:48.068 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:48.068 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:08:48.078 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:48.078 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:08:48.198 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:48.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:48.198 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:48.318 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:48.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:48.318 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:48.318 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:48.318 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2430599328, 0x0, 418435064) start.
17-03-17 18:08:48.318 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:48.318 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:08:48.388 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:08:48.388 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:48.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28194 150' command took 2 ms to send, 1306 ms to get response, and 1314 ms overall
17-03-17 18:08:48.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:48.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.12825725400621. ------
17-03-17 18:08:48.398 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:48.398 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13490 mm
17-03-17 18:08:48.398 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:48.398 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29468, sync = True, waitForSettling = False)
17-03-17 18:08:48.398 -07 000000459 INF: Z Motor: Moving to -0.134896 mm, started at -0.128257 mm, distance = -6.64 um
17-03-17 18:08:48.398 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:08:48.398 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:08:48.398 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:48.408 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:48.408 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:48.408 -07 000000626 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:08:48.418 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:08:48.418 -07 000000569 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:48.418 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:48.418 -07 000000569 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:08:48.418 -07 000000459 INF: FPGA: Xmit ZDACW 29468\n [Z Motor]
17-03-17 18:08:48.418 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:08:48.428 -07 000000459 INF: FPGA: 'ZDACW 29468' command took 2 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:08:48.428 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:48.438 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:48.448 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:48.448 -07 000000424 INF: FPGA: Recv ZDACR 29468
17-03-17 18:08:48.458 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:08:48.458 -07 000000459 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:08:48.628 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:48.628 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:08:48.708 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2430599328, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:08:48.708 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:08:48.708 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:48.708 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:08:48.708 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:08:48.708 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:48.708 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:48.718 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:48.718 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 18:08:48.718 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:08:48.808 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:08:48.808 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:08:48.838 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:48.848 -07 000000480 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:08:48.848 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 18:08:48.848 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:48.848 -07 000000569 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 18:08:48.848 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 18:08:49.798 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:49.798 -07 000000459 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:08:49.808 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:49.808 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:49.818 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:49.828 -07 000000569 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:49.828 -07 000000569 INF: Y Motor: Moved to 73.1763 after 1423 ms (table move)
17-03-17 18:08:49.828 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134896 mm (DAC = 29468)
17-03-17 18:08:49.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:49.828 -07 000000569 INF: FPGA: Recv ZSGSRD 30283
17-03-17 18:08:49.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:49.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:49.838 -07 000000569 INF: FPGA: Recv ZSGSRD 30286
17-03-17 18:08:49.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:49.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:49.848 -07 000000626 INF: FPGA: Recv ZSGSRD 30289
17-03-17 18:08:49.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:49.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:49.858 -07 000000626 INF: FPGA: Recv ZSGSRD 30280
17-03-17 18:08:49.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:49.868 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:49.868 -07 000000424 INF: FPGA: Recv ZSGSRD 30288
17-03-17 18:08:49.878 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:08:49.878 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:49.878 -07 000000424 INF: FPGA: Recv ZSGSRD 30293
17-03-17 18:08:49.888 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:49.888 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:49.888 -07 000000424 INF: FPGA: Recv ZSGSRD 30298
17-03-17 18:08:49.898 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:49.898 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:49.898 -07 000000480 INF: FPGA: Recv ZSGSRD 30296
17-03-17 18:08:49.908 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:49.908 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:49.908 -07 000000480 INF: FPGA: Recv ZSGSRD 30286
17-03-17 18:08:49.918 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:49.918 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:49.918 -07 000000424 INF: FPGA: Recv ZSGSRD 30282
17-03-17 18:08:49.928 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:49.928 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:49.928 -07 000000424 INF: FPGA: Recv ZPIEZORD 26166
17-03-17 18:08:49.938 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:49.938 -07 000000501 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.1 V.
17-03-17 18:08:49.938 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30288 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30287 (-134.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30280 (-134.1 uncal um), Max = 30298 (-134.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:08:49.938 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30288, posNoise = 10, negNoise = 8
17-03-17 18:08:49.938 -07 000000501 INF: Z Motor: After move to -0.134896, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:49.938 -07 000000501 INF: Z Motor: Settle wait time = 1426 ms, measure time = 108 ms (allowed 150 ms), total time = 1534 ms
17-03-17 18:08:49.938 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:49.988 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 18:08:49.988 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:49.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:49.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:49.988 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:49.988 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:49.988 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:49.988 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:49.998 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:49.998 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:49.998 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:08:49.998 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:50.008 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:08:50.008 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 21 ms.
17-03-17 18:08:50.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:50.058 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:50.258 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:50.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:50.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:50.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2482896656, 0x0, 559484976) start.
17-03-17 18:08:50.298 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:50.298 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:50.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 18:08:50.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2482896656, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:08:50.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:50.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:08:50.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:08:50.398 -07 000000458 INF: Autofocus start
17-03-17 18:08:50.398 -07 000000458 INF: MeasureProfile start
17-03-17 18:08:50.398 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:50.398 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:50.408 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:50.408 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:50.408 -07 000000458 INF: MeasureProfile done
17-03-17 18:08:50.408 -07 000000458 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:08:50.408 -07 000000458 INF: Autofocus finished
17-03-17 18:08:50.608 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:50.608 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:50.608 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134899889360791. ----------
17-03-17 18:08:50.608 -07 000000610 INF: Cycle	9	Tile	17	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:50.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27992, sync = True, waitForSettling = True)
17-03-17 18:08:50.618 -07 000000610 INF: Z Motor: Moving to -0.128139 mm, started at -0.134900 mm, distance = 6.76 um
17-03-17 18:08:50.618 -07 000000610 INF: FPGA: Xmit ZDACW 27992\n [Z Motor]
17-03-17 18:08:50.618 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:08:50.628 -07 000000610 INF: FPGA: 'ZDACW 27992' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:08:50.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:50.628 -07 000000569 INF: FPGA: Recv ZDACR 27992
17-03-17 18:08:50.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:50.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:50.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:50.788 -07 000000431 INF: FPGA: Recv ZSGSRD 29237
17-03-17 18:08:50.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:50.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:50.798 -07 000000569 INF: FPGA: Recv ZSGSRD 29239
17-03-17 18:08:50.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:50.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:50.808 -07 000000462 INF: FPGA: Recv ZSGSRD 29239
17-03-17 18:08:50.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:50.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:50.818 -07 000000459 INF: FPGA: Recv ZSGSRD 29234
17-03-17 18:08:50.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:50.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:50.828 -07 000000431 INF: FPGA: Recv ZSGSRD 29241
17-03-17 18:08:50.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:50.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:50.838 -07 000000569 INF: FPGA: Recv ZSGSRD 29240
17-03-17 18:08:50.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:50.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:50.848 -07 000000462 INF: FPGA: Recv ZSGSRD 29232
17-03-17 18:08:50.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:50.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:50.858 -07 000000459 INF: FPGA: Recv ZSGSRD 29235
17-03-17 18:08:50.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:50.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:50.868 -07 000000458 INF: FPGA: Recv ZSGSRD 29235
17-03-17 18:08:50.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:50.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:50.878 -07 000000501 INF: FPGA: Recv ZSGSRD 29242
17-03-17 18:08:50.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:50.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:50.888 -07 000000576 INF: FPGA: Recv ZPIEZORD 24789
17-03-17 18:08:50.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:50.898 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.8 V.
17-03-17 18:08:50.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29237 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29238 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29232 (-127.3 uncal um), Max = 29242 (-127.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:08:50.898 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29237, posNoise = 5, negNoise = 5
17-03-17 18:08:50.898 -07 000000610 INF: Z Motor: After move to -0.128139, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:50.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:08:50.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:50.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:50.898 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:50.898 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:50.898 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:50.898 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:50.898 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:50.898 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:50.898 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:08:50.898 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:50.898 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:08:50.898 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:50.908 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:08:50.908 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:50.908 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:50.908 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:50.918 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:08:50.918 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:08:50.918 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:08:50.918 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:08:50.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28169 150\n [Camera]
17-03-17 18:08:51.118 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:51.518 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 18:08:51.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 18:08:51.518 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:51.518 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 18:08:51.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 18:08:51.518 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:51.518 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:51.518 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:08:51.528 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:51.528 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:08:51.568 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:51.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:51.708 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28169 776
17-03-17 18:08:51.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:51.898 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:08:51.898 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:08:51.898 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:51.898 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 18:08:51.898 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:08:51.898 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:51.898 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:08:51.898 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:08:51.898 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:51.908 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:08:52.068 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:52.068 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:52.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:52.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:52.068 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:52.068 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:52.078 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:52.078 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:08:52.078 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:52.078 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:08:52.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:08:52.238 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:52.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28169 150' command took 2 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-17 18:08:52.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:52.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.1281480423998. ------
17-03-17 18:08:52.238 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:52.238 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13453 mm
17-03-17 18:08:52.238 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:52.238 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:08:52.238 -07 000000459 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 18:08:52.248 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:52.458 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:08:52.458 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:08:52.458 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:52.458 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:52.458 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:08:52.468 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:08:52.468 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:52.468 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:08:52.468 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:52.468 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:08:52.528 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:52.528 -07 000000626 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:08:52.528 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 278 ms to get response, and 289 ms overall
17-03-17 18:08:52.528 -07 000000459 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:52.528 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29388, sync = True, waitForSettling = False)
17-03-17 18:08:52.528 -07 000000424 INF: Z Motor: Moving to -0.134530 mm, started at -0.128148 mm, distance = -6.38 um
17-03-17 18:08:52.528 -07 000000424 INF: FPGA: Xmit ZDACW 29388\n [Z Motor]
17-03-17 18:08:52.528 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 288 ms to get response, and 292 ms overall
17-03-17 18:08:52.538 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:52.538 -07 000000459 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:52.538 -07 000000459 INF: Y Motor: Moving 1353 steps-33
17-03-17 18:08:52.538 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 18:08:52.538 -07 000000424 INF: FPGA: 'ZDACW 29388' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:08:52.548 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:52.558 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:52.558 -07 000000626 INF: FPGA: Recv ZDACR 29388
17-03-17 18:08:52.568 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:08:52.568 -07 000000424 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 18:08:52.738 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:52.738 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:08:52.928 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 18:08:52.928 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 389 ms overall
17-03-17 18:08:52.948 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:52.948 -07 000000626 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:08:52.958 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:08:52.958 -07 000000459 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:52.958 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:08:52.958 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.846 mm, average velocity = 2.176 mm/sec
17-03-17 18:08:52.988 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.031682,
17-03-17 18:08:53.908 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:53.908 -07 000000626 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:08:53.918 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:53.918 -07 000000459 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:53.928 -07 000000459 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:53.928 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:53.928 -07 000000459 INF: Y Motor: Moved to 74.0088 after 1686 ms (table move)
17-03-17 18:08:53.928 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134530 mm (DAC = 29388)
17-03-17 18:08:53.928 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:53.938 -07 000000626 INF: FPGA: Recv ZSGSRD 30241
17-03-17 18:08:53.938 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:08:53.938 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:53.938 -07 000000424 INF: FPGA: Recv ZSGSRD 30231
17-03-17 18:08:53.948 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:08:53.948 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:53.948 -07 000000476 INF: FPGA: Recv ZSGSRD 30236
17-03-17 18:08:53.958 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:53.958 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:53.958 -07 000000409 INF: FPGA: Recv ZSGSRD 30233
17-03-17 18:08:53.968 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:53.968 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:53.968 -07 000000459 INF: FPGA: Recv ZSGSRD 30225
17-03-17 18:08:53.978 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:53.978 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:53.978 -07 000000623 INF: FPGA: Recv ZSGSRD 30228
17-03-17 18:08:53.988 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:53.988 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:53.988 -07 000000476 INF: FPGA: Recv ZSGSRD 30232
17-03-17 18:08:53.998 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:53.998 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:53.998 -07 000000623 INF: FPGA: Recv ZSGSRD 30230
17-03-17 18:08:54.008 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.008 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.008 -07 000000424 INF: FPGA: Recv ZSGSRD 30233
17-03-17 18:08:54.018 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.018 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.018 -07 000000547 INF: FPGA: Recv ZSGSRD 30230
17-03-17 18:08:54.028 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.028 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:54.028 -07 000000476 INF: FPGA: Recv ZPIEZORD 26087
17-03-17 18:08:54.038 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.038 -07 000000480 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -9.1 V.
17-03-17 18:08:54.038 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30232 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30232 (-133.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30225 (-133.7 uncal um), Max = 30241 (-133.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:08:54.038 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30232, posNoise = 9, negNoise = 7
17-03-17 18:08:54.038 -07 000000480 INF: Z Motor: After move to -0.134530, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:54.038 -07 000000480 INF: Z Motor: Settle wait time = 1399 ms, measure time = 102 ms (allowed 150 ms), total time = 1501 ms
17-03-17 18:08:54.038 -07 000000480 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:54.088 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1843 ms
17-03-17 18:08:54.088 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:54.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:54.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:54.088 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:54.088 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:54.088 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:54.088 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:54.088 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:54.098 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:54.098 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:54.098 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:54.108 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:08:54.108 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:08:54.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:54.158 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:54.358 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:54.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:54.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:54.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 18:08:54.398 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:08:54.398 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:54.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:08:54.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:08:54.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:54.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:08:54.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:08:54.498 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:54.498 -07 000000459 INF: Autofocus start
17-03-17 18:08:54.498 -07 000000459 INF: MeasureProfile start
17-03-17 18:08:54.498 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:54.508 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:54.508 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:54.508 -07 000000459 INF: MeasureProfile done
17-03-17 18:08:54.508 -07 000000459 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 18:08:54.508 -07 000000459 INF: Autofocus finished
17-03-17 18:08:54.708 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:54.708 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:54.708 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134540133480852. ----------
17-03-17 18:08:54.718 -07 000000610 INF: Cycle	9	Tile	18	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:54.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27866, sync = True, waitForSettling = True)
17-03-17 18:08:54.718 -07 000000610 INF: Z Motor: Moving to -0.127562 mm, started at -0.134540 mm, distance = 6.98 um
17-03-17 18:08:54.718 -07 000000610 INF: FPGA: Xmit ZDACW 27866\n [Z Motor]
17-03-17 18:08:54.718 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 18:08:54.728 -07 000000610 INF: FPGA: 'ZDACW 27866' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:08:54.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:54.728 -07 000000547 INF: FPGA: Recv ZDACR 27866
17-03-17 18:08:54.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:54.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.888 -07 000000547 INF: FPGA: Recv ZSGSRD 29139
17-03-17 18:08:54.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:54.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.898 -07 000000547 INF: FPGA: Recv ZSGSRD 29153
17-03-17 18:08:54.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.908 -07 000000547 INF: FPGA: Recv ZSGSRD 29143
17-03-17 18:08:54.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.918 -07 000000459 INF: FPGA: Recv ZSGSRD 29146
17-03-17 18:08:54.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.928 -07 000000459 INF: FPGA: Recv ZSGSRD 29151
17-03-17 18:08:54.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.938 -07 000000547 INF: FPGA: Recv ZSGSRD 29142
17-03-17 18:08:54.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.948 -07 000000547 INF: FPGA: Recv ZSGSRD 29149
17-03-17 18:08:54.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.958 -07 000000547 INF: FPGA: Recv ZSGSRD 29148
17-03-17 18:08:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.968 -07 000000547 INF: FPGA: Recv ZSGSRD 29142
17-03-17 18:08:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:54.978 -07 000000547 INF: FPGA: Recv ZSGSRD 29150
17-03-17 18:08:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:54.988 -07 000000547 INF: FPGA: Recv ZPIEZORD 24695
17-03-17 18:08:54.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:54.998 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.252 V. Piezo Error = -9.8 V.
17-03-17 18:08:54.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29146 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29147 (-126.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29139 (-126.7 uncal um), Max = 29153 (-126.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:08:54.998 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29146, posNoise = 7, negNoise = 7
17-03-17 18:08:54.998 -07 000000610 INF: Z Motor: After move to -0.127562, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:54.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:08:54.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:54.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:54.998 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:54.998 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:54.998 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:54.998 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:54.998 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:54.998 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:54.998 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:08:54.998 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:54.998 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:08:54.998 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:55.008 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:08:55.008 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:55.008 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:08:55.008 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:55.008 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:08:55.008 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:08:55.008 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:08:55.008 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:08:55.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 28043 150\n [Camera]
17-03-17 18:08:55.218 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 18:08:55.608 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:55.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:55.608 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:55.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:55.608 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:55.608 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:55.618 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:55.618 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:08:55.618 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:55.618 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:08:55.798 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28043 776
17-03-17 18:08:55.948 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:55.988 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:08:55.988 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:08:55.988 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:55.998 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:08:55.998 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:08:55.998 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:55.998 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:55.998 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:55.998 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:08:56.008 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:08:56.138 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:56.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:56.138 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:56.258 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:08:56.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:08:56.258 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:56.268 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:56.268 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:08:56.268 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:56.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:08:56.328 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 18:08:56.328 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:08:56.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 28043 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-17 18:08:56.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:08:56.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.1275634390949. ------
17-03-17 18:08:56.338 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:56.338 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13383 mm
17-03-17 18:08:56.338 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:08:56.338 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:56.338 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29235, sync = True, waitForSettling = False)
17-03-17 18:08:56.338 -07 000000475 INF: Z Motor: Moving to -0.133829 mm, started at -0.127563 mm, distance = -6.27 um
17-03-17 18:08:56.338 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:08:56.338 -07 000000478 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:08:56.348 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:56.348 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:56.348 -07 000000480 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:08:56.358 -07 000000475 INF: FPGA: Xmit ZDACW 29235\n [Z Motor]
17-03-17 18:08:56.358 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:08:56.358 -07 000000478 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:56.358 -07 000000478 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:08:56.358 -07 000000478 INF: Y Motor: Moving 1350 steps-28
17-03-17 18:08:56.358 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:08:56.368 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:08:56.368 -07 000000475 INF: FPGA: 'ZDACW 29235' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:08:56.378 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:08:56.388 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:56.388 -07 000000476 INF: FPGA: Recv ZDACR 29235
17-03-17 18:08:56.398 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:08:56.398 -07 000000475 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 18:08:56.648 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:08:56.648 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:08:56.648 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:56.648 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:08:56.648 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:08:56.648 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:56.648 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:56.658 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:08:56.658 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 18:08:56.658 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:08:56.688 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:08:56.688 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:08:56.688 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 319 ms to get response, and 349 ms overall
17-03-17 18:08:56.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 8. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=80, R2=89, Total=169. Warn if over 250 bubbles per interval.
17-03-17 18:08:56.748 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 18:08:56.748 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:08:56.768 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:56.778 -07 000000458 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:08:56.778 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:08:56.778 -07 000000478 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:56.778 -07 000000478 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:08:56.778 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 18:08:57.728 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:08:57.728 -07 000000458 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:08:57.738 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:57.738 -07 000000478 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:08:57.748 -07 000000478 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:08:57.748 -07 000000478 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:08:57.748 -07 000000478 INF: Y Motor: Moved to 74.8325 after 1410 ms (table move)
17-03-17 18:08:57.748 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133829 mm (DAC = 29235)
17-03-17 18:08:57.748 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:57.758 -07 000000547 INF: FPGA: Recv ZSGSRD 30129
17-03-17 18:08:57.768 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:08:57.768 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:57.768 -07 000000547 INF: FPGA: Recv ZSGSRD 30122
17-03-17 18:08:57.778 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:57.778 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:57.778 -07 000000458 INF: FPGA: Recv ZSGSRD 30123
17-03-17 18:08:57.788 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:57.788 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:57.788 -07 000000458 INF: FPGA: Recv ZSGSRD 30117
17-03-17 18:08:57.798 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:57.798 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:57.798 -07 000000458 INF: FPGA: Recv ZSGSRD 30115
17-03-17 18:08:57.808 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:57.808 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:57.808 -07 000000458 INF: FPGA: Recv ZSGSRD 30120
17-03-17 18:08:57.818 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:57.818 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:57.818 -07 000000459 INF: FPGA: Recv ZSGSRD 30120
17-03-17 18:08:57.828 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:57.828 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:57.828 -07 000000459 INF: FPGA: Recv ZSGSRD 30131
17-03-17 18:08:57.838 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:57.838 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:57.838 -07 000000458 INF: FPGA: Recv ZSGSRD 30120
17-03-17 18:08:57.848 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:57.848 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:57.848 -07 000000478 INF: FPGA: Recv ZSGSRD 30127
17-03-17 18:08:57.858 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:57.858 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:57.858 -07 000000458 INF: FPGA: Recv ZPIEZORD 25992
17-03-17 18:08:57.868 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:57.868 -07 000000409 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.461 V. Piezo Error = -9.1 V.
17-03-17 18:08:57.868 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30122 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30121 (-133.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30115 (-133.0 uncal um), Max = 30131 (-133.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:08:57.868 -07 000000409 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30122, posNoise = 9, negNoise = 7
17-03-17 18:08:57.868 -07 000000409 INF: Z Motor: After move to -0.133829, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:57.868 -07 000000409 INF: Z Motor: Settle wait time = 1414 ms, measure time = 111 ms (allowed 150 ms), total time = 1525 ms
17-03-17 18:08:57.868 -07 000000409 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:08:57.908 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1567 ms
17-03-17 18:08:57.908 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:08:57.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:57.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:57.908 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:57.918 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:57.918 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:08:57.918 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:57.918 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:57.918 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:08:57.918 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:57.918 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:08:57.928 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:08:57.928 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:08:57.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:08:57.978 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:08:58.178 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:08:58.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:08:58.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:08:58.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 18:08:58.218 -07 000000409 INF: FPGA: Recv @CAMSNAP 281
17-03-17 18:08:58.218 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 18:08:58.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:08:58.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:08:58.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:58.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:08:58.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:08:58.318 -07 000000409 INF: Autofocus start
17-03-17 18:08:58.318 -07 000000409 INF: MeasureProfile start
17-03-17 18:08:58.318 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:08:58.318 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:08:58.328 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:08:58.328 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:08:58.328 -07 000000409 INF: MeasureProfile done
17-03-17 18:08:58.328 -07 000000409 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:08:58.328 -07 000000409 INF: Autofocus finished
17-03-17 18:08:58.358 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.020806,
17-03-17 18:08:58.528 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:08:58.528 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:08:58.528 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.133833470145259. ----------
17-03-17 18:08:58.528 -07 000000610 INF: Cycle	9	Tile	19	Exposure Settings		A	391	G	188	T	188	C	391
17-03-17 18:08:58.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27776, sync = True, waitForSettling = True)
17-03-17 18:08:58.538 -07 000000610 INF: Z Motor: Moving to -0.127150 mm, started at -0.133833 mm, distance = 6.68 um
17-03-17 18:08:58.538 -07 000000610 INF: FPGA: Xmit ZDACW 27776\n [Z Motor]
17-03-17 18:08:58.538 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 18:08:58.548 -07 000000610 INF: FPGA: 'ZDACW 27776' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:08:58.548 -07 000000409 INF: FPGA: Recv ZDACR 27776
17-03-17 18:08:58.558 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:08:58.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:58.708 -07 000000462 INF: FPGA: Recv ZSGSRD 29089
17-03-17 18:08:58.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:58.718 -07 000000547 INF: FPGA: Recv ZSGSRD 29086
17-03-17 18:08:58.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:58.738 -07 000000459 INF: FPGA: Recv ZSGSRD 29077
17-03-17 18:08:58.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:08:58.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:58.748 -07 000000458 INF: FPGA: Recv ZSGSRD 29085
17-03-17 18:08:58.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:58.758 -07 000000462 INF: FPGA: Recv ZSGSRD 29084
17-03-17 18:08:58.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:58.768 -07 000000458 INF: FPGA: Recv ZSGSRD 29077
17-03-17 18:08:58.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:58.778 -07 000000462 INF: FPGA: Recv ZSGSRD 29081
17-03-17 18:08:58.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:58.788 -07 000000478 INF: FPGA: Recv ZSGSRD 29082
17-03-17 18:08:58.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:58.798 -07 000000459 INF: FPGA: Recv ZSGSRD 29079
17-03-17 18:08:58.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:08:58.808 -07 000000547 INF: FPGA: Recv ZSGSRD 29081
17-03-17 18:08:58.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:08:58.818 -07 000000462 INF: FPGA: Recv ZPIEZORD 24621
17-03-17 18:08:58.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:08:58.828 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.238 V. Piezo Error = -9.8 V.
17-03-17 18:08:58.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29082 (-126.4 uncal um), Error = 0.8 uncal um, Median = 29082 (-126.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29077 (-126.3 uncal um), Max = 29089 (-126.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:08:58.828 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29082, posNoise = 7, negNoise = 5
17-03-17 18:08:58.828 -07 000000610 INF: Z Motor: After move to -0.127150, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:08:58.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 18:08:58.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:08:58.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:08:58.828 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:08:58.828 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:08:58.828 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:08:58.828 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:08:58.828 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:08:58.828 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:08:58.828 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:08:58.828 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:08:58.828 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:08:58.828 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:08:58.828 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:08:58.828 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:08:58.828 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:08:58.828 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:08:58.848 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:08:58.848 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:08:58.848 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:08:58.848 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:08:58.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 391 391 188 188 27952 150\n [Camera]
17-03-17 18:08:59.048 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:08:59.438 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 18:08:59.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 18:08:59.438 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:08:59.438 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 18:08:59.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 18:08:59.448 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:08:59.448 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:08:59.448 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) start.
17-03-17 18:08:59.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:08:59.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 18:08:59.628 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27952 776
17-03-17 18:08:59.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 18:08:59.828 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:08:59.828 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:08:59.828 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:59.828 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 18:08:59.828 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:08:59.828 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:08:59.838 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:59.838 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:08:59.838 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:08:59.838 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:08:59.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 18:08:59.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 18:08:59.968 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:09:00.078 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 18:09:00.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 18:09:00.078 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:09:00.088 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:09:00.088 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:09:00.088 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:09:00.088 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:09:00.158 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 18:09:00.158 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:09:00.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 391 391 188 188 27952 150' command took 2 ms to send, 1309 ms to get response, and 1313 ms overall
17-03-17 18:09:00.478 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:09:00.478 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:09:00.478 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:09:00.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:09:00.478 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:09:00.478 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:09:00.478 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:09:00.478 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:09:00.478 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 18:09:00.478 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:09:00.488 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:09:00.528 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 18:09:00.528 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:09:00.568 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 18:09:00.688 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-17 18:09:00.688 -07 000000610 INF: Imaging Cycle 9: ScanTilesCommand Cycle 9 time end. Duration was 169289 ms.
17-03-17 18:09:00.688 -07 000000610 INF: =================== Cycle #9 ===================
17-03-17 18:09:00.688 -07 000000610 INF: ===================  ===================
17-03-17 18:09:00.688 -07 000000458 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:09:00.688 -07 000000478 INF: FPGA: Recv EXLED1ADCR 23
17-03-17 18:09:00.688 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.
17-03-17 18:09:00.698 -07 000000458 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:09:00.698 -07 000000458 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-17 18:09:00.698 -07 000000458 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 9, FrontChillerTemperature: 4.020806, FrontChillerHeatSinkTemperature: 0.252148, AmbientTemperature: 18.72717, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.40944, GreenLEDSensorTemperature: 26.01547, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493