[2017-07-06T00:31:12.194122] [node170.cm.cluster] [39620_1] [WorkflowRunner] Initiating pyFlow run [2017-07-06T00:31:12.196875] [node170.cm.cluster] [39620_1] [WorkflowRunner] pyFlowClientWorkflowClass: DemuxWorkflowRunner [2017-07-06T00:31:12.199034] [node170.cm.cluster] [39620_1] [WorkflowRunner] pyFlowVersion: 1.1.2 [2017-07-06T00:31:12.200983] [node170.cm.cluster] [39620_1] [WorkflowRunner] pythonVersion: 2.7.6.final.0 [2017-07-06T00:31:12.203097] [node170.cm.cluster] [39620_1] [WorkflowRunner] WorkingDir: '/illumina/scratch/Voyager/BUILDS/raptor_builds/IsasNS4/demux/65367.backup' [2017-07-06T00:31:12.205277] [node170.cm.cluster] [39620_1] [WorkflowRunner] ProcessCmdLine: '/illumina/scripts/WGS/DemuxWorkflow/DemuxWorkflow.Voyager/scripts/demuxWorkflow.py --sample-config /illumina/scratch/Voyager/BUILDS/raptor_builds/IsasNS4/demux/65367.workspace/raptor_rqfc_config_65367.yaml' [2017-07-06T00:31:12.207163] [node170.cm.cluster] [39620_1] [WorkflowRunner] [RunParameters] mode: local [2017-07-06T00:31:12.209507] [node170.cm.cluster] [39620_1] [WorkflowRunner] [RunParameters] nCores: 28 [2017-07-06T00:31:12.211909] [node170.cm.cluster] [39620_1] [WorkflowRunner] [RunParameters] memMb: 57344 [2017-07-06T00:31:12.214220] [node170.cm.cluster] [39620_1] [WorkflowRunner] [RunParameters] dataDir: /illumina/scratch/Voyager/BUILDS/raptor_builds/IsasNS4/demux/65367/pyflow.data [2017-07-06T00:31:12.217526] [node170.cm.cluster] [39620_1] [WorkflowRunner] [RunParameters] isDryRun: False [2017-07-06T00:31:12.219896] [node170.cm.cluster] [39620_1] [WorkflowRunner] [RunParameters] isContinue: False [2017-07-06T00:31:12.222003] [node170.cm.cluster] [39620_1] [WorkflowRunner] [RunParameters] isForceContinue: False [2017-07-06T00:31:12.223898] [node170.cm.cluster] [39620_1] [WorkflowRunner] [RunParameters] mailTo: '' [2017-07-06T00:31:12.226823] [node170.cm.cluster] [39620_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow [2017-07-06T00:31:12.339772] [node170.cm.cluster] [39620_1] [WorkflowRunner] Adding command task 'run_isis_demux' to master workflow [2017-07-06T00:31:12.357253] [node170.cm.cluster] [39620_1] [WorkflowRunner] Adding command task 'touch_run_isis_demux' to master workflow [2017-07-06T00:31:12.378151] [node170.cm.cluster] [39620_1] [TaskManager] Launching command task: 'run_isis_demux' from master workflow [2017-07-06T00:31:12.386005] [node170.cm.cluster] [39620_1] [TaskRunner:run_isis_demux] Task initiated on local node [2017-07-06T00:31:12.390179] [node170.cm.cluster] [39620_1] [WorkflowRunner] Adding command task 'create_build_stats' to master workflow [2017-07-06T00:31:12.401198] [node170.cm.cluster] [39620_1] [WorkflowRunner] Adding command task 'touch_create_build_stats' to master workflow [2017-07-06T00:31:12.410941] [node170.cm.cluster] [39620_1] [WorkflowRunner] Adding command task 'create_deliverable' to master workflow [2017-07-06T00:31:12.420686] [node170.cm.cluster] [39620_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow, waiting for task completion [2017-07-06T01:12:18.693782] [node170.cm.cluster] [39620_1] [TaskManager] Completed command task: 'run_isis_demux' launched from master workflow [2017-07-06T01:12:18.725439] [node170.cm.cluster] [39620_1] [TaskManager] Launching command task: 'touch_run_isis_demux' from master workflow [2017-07-06T01:12:18.773279] [node170.cm.cluster] [39620_1] [TaskRunner:touch_run_isis_demux] Task initiated on local node [2017-07-06T01:12:20.254072] [node170.cm.cluster] [39620_1] [TaskManager] Completed command task: 'touch_run_isis_demux' launched from master workflow [2017-07-06T01:12:20.270813] [node170.cm.cluster] [39620_1] [TaskManager] Launching command task: 'create_deliverable' from master workflow [2017-07-06T01:12:20.278603] [node170.cm.cluster] [39620_1] [TaskRunner:create_deliverable] Task initiated on local node [2017-07-06T01:12:20.286420] [node170.cm.cluster] [39620_1] [TaskManager] Launching command task: 'create_build_stats' from master workflow [2017-07-06T01:12:20.294483] [node170.cm.cluster] [39620_1] [TaskRunner:create_build_stats] Task initiated on local node [2017-07-06T01:12:22.363908] [node170.cm.cluster] [39620_1] [TaskManager] Completed command task: 'create_deliverable' launched from master workflow [2017-07-06T01:12:39.794922] [node170.cm.cluster] [39620_1] [TaskManager] Completed command task: 'create_build_stats' launched from master workflow [2017-07-06T01:12:39.813039] [node170.cm.cluster] [39620_1] [TaskManager] Launching command task: 'touch_create_build_stats' from master workflow [2017-07-06T01:12:39.823003] [node170.cm.cluster] [39620_1] [TaskRunner:touch_create_build_stats] Task initiated on local node [2017-07-06T01:12:39.987096] [node170.cm.cluster] [39620_1] [TaskManager] Completed command task: 'touch_create_build_stats' launched from master workflow [2017-07-06T01:12:47.971544] [node170.cm.cluster] [39620_1] [WorkflowRunner] Workflow successfully completed all tasks [2017-07-06T01:12:47.977353] [node170.cm.cluster] [39620_1] [WorkflowRunner] Elapsed time for full workflow: 2496 sec