Basic Statistics
Measure | Value |
---|---|
Filename | 160123_I132_FCH3YHMBBXX_L4_OYSzenG1AAD96FAAPEI-109_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 364261046 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCGATTCGGCCCAAATTTGCACCACATCAGGCCCTTGACAGGGCGCTT | 2588284 | 0.7105574500546512 | No Hit |
CAGCGAATCGCACCAAATTTGCACCATCGAAGCGCCCTGTCAAGGGCCTG | 1596170 | 0.43819398684755323 | No Hit |
CAGCGAATCGCGCCAAATTTGCACCATCGAAGCGCCCTGTCAAGGGCCTG | 482996 | 0.13259611624790646 | No Hit |
NAGCGATTCGGCCCAAATTTGCACCACATCAGGCCCTTGACAGGGCGCTT | 418352 | 0.11484950273820933 | No Hit |
GAGCGATTCGGCCCAAATTTGCACCACATCAGGCCCTTGACAGGGCGCTT | 402145 | 0.11040022105465541 | No Hit |
CAGCAAATCGCACCAAATTTGCACCATCGAAGCGCCCTGTCAAGGGCCTG | 377902 | 0.1037448291959278 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGCCC | 721205 | 0.0 | 89.530495 | 8 |
CAGCGAA | 372905 | 0.0 | 86.60482 | 1 |
TTCGGCC | 749485 | 0.0 | 86.505486 | 7 |
CGGCCCA | 750410 | 0.0 | 86.09306 | 9 |
ATTCGGC | 765035 | 0.0 | 84.80317 | 6 |
TCGCACC | 676290 | 0.0 | 84.48887 | 8 |
GATTCGG | 834930 | 0.0 | 83.64595 | 5 |
ATCGCAC | 686580 | 0.0 | 83.306465 | 7 |
AGCGAAT | 500060 | 0.0 | 83.064606 | 2 |
CAGCGAT | 456540 | 0.0 | 82.95635 | 1 |
ATCGCGC | 326330 | 0.0 | 82.84779 | 7 |
CAGCTGC | 20345 | 0.0 | 79.39535 | 1 |
GCGAATC | 597660 | 0.0 | 79.23955 | 3 |
TCACCGG | 1100840 | 0.0 | 79.18778 | 8 |
AATCGCG | 341820 | 0.0 | 79.18711 | 6 |
AGCGATT | 532170 | 0.0 | 78.743195 | 2 |
TCGCGCC | 343240 | 0.0 | 78.59912 | 8 |
GTGTGGC | 986980 | 0.0 | 78.59777 | 7 |
CGCGCCA | 348090 | 0.0 | 77.313774 | 9 |
AATCGCA | 741545 | 0.0 | 77.30547 | 6 |