Basic Statistics
Measure | Value |
---|---|
Filename | 1HL_11A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 3568503 |
Sequences flagged as poor quality | 0 |
Sequence length | 93 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 16902 | 0.4736439902110212 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 10258 | 0.28745947530378985 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 8090 | 0.2267057082479684 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 7464 | 0.2091633382401528 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 6571 | 0.1841388391714957 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 6100 | 0.17094002723270796 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 6064 | 0.16993120084248214 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5816 | 0.1629815079320376 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 5455 | 0.15286522107449538 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 5346 | 0.14981071894853387 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 5003 | 0.14019884528610457 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 4985 | 0.13969443209099164 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 4834 | 0.13546296584310002 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 4709 | 0.1319600964325937 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 4478 | 0.12548679376197808 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 4184 | 0.11724804490846723 | No Hit |
CAGCGATCAAATCGCTTACATTCCCTAATTTAACTCGCAATGCCTCGTCA | 3876 | 0.10861697468097967 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCAGCC | 35 | 6.6393113E-10 | 86.99991 | 2 |
AGCAGCC | 110 | 0.0 | 86.99991 | 2 |
GCTGCTA | 40 | 2.0008883E-11 | 86.9999 | 3 |
GCTGCCT | 50 | 0.0 | 86.9999 | 3 |
GCTGCAA | 85 | 0.0 | 86.9999 | 3 |
AGCTGCA | 160 | 0.0 | 86.9999 | 2 |
GCAGCCC | 25 | 7.804101E-7 | 86.9999 | 3 |
GCTGCTT | 30 | 2.2702807E-8 | 86.99989 | 3 |
GCAGCCT | 30 | 2.2702807E-8 | 86.99989 | 3 |
GCAGCCG | 15 | 9.388781E-4 | 86.99989 | 3 |
CAGCAGC | 510 | 0.0 | 84.44108 | 1 |
CTGCTGC | 145 | 0.0 | 83.99991 | 1 |
CAGCTGC | 550 | 0.0 | 83.836266 | 1 |
AGCTGCT | 185 | 0.0 | 82.2972 | 2 |
CAGCCCT | 18655 | 0.0 | 81.21701 | 1 |
AGCAGCA | 225 | 0.0 | 81.19991 | 2 |
AGCAGCT | 70 | 0.0 | 80.78563 | 2 |
AGCTGCC | 135 | 0.0 | 80.555466 | 2 |
GCTGCAT | 65 | 0.0 | 80.3076 | 3 |
CAGCGTA | 8205 | 0.0 | 79.84268 | 1 |