Basic Statistics
Measure | Value |
---|---|
Filename | 1HL_33A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2708943 |
Sequences flagged as poor quality | 0 |
Sequence length | 92 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 13481 | 0.4976479756126282 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 8517 | 0.31440307160394293 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 6092 | 0.2248847613257274 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 5915 | 0.2183508475445958 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 5590 | 0.20635354822895868 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5030 | 0.18568127863893777 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 4897 | 0.1807716146113078 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 4844 | 0.17881513195368082 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 4615 | 0.17036165028204728 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 4137 | 0.15271639159627942 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 3771 | 0.13920558682851578 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 3455 | 0.12754052041700398 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 3366 | 0.12425510614287566 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 3331 | 0.12296308929349935 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 3200 | 0.11812725480011944 | No Hit |
CAGCGATCAAATCGCTTACATTCCCTAATTTAACTCGCAATGCCTCGTCA | 3142 | 0.1159861983068673 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 3075 | 0.11351290890948978 | No Hit |
CAGCTACTACCCTTGCACAGCAAGGCATTGCTAATAAGTTATTCAAGCGC | 2948 | 0.10882473348461005 | No Hit |
CAGCACTTTGAACTTTGTTCACCATTTCTTCGTAGTCGTTGATACGTTGT | 2738 | 0.10107263238835222 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCTGCTA | 50 | 0.0 | 85.99949 | 3 |
AGCAGCG | 55 | 0.0 | 85.99949 | 2 |
GCTGCTC | 15 | 9.829928E-4 | 85.99948 | 3 |
AGCTGCT | 105 | 0.0 | 85.99948 | 2 |
GCAGCCT | 20 | 2.8586232E-5 | 85.99948 | 3 |
GCAGCAC | 15 | 9.829928E-4 | 85.99948 | 3 |
TGCAGCA | 40 | 2.1827873E-11 | 85.99948 | 2 |
CAGCTGC | 390 | 0.0 | 84.89693 | 1 |
CAGCAGC | 385 | 0.0 | 83.765724 | 1 |
CTGCTGC | 125 | 0.0 | 82.5595 | 1 |
AGCAGCC | 105 | 0.0 | 81.90427 | 2 |
AGCAGCT | 95 | 0.0 | 81.4732 | 2 |
CTGCAGC | 85 | 0.0 | 80.94069 | 1 |
CAGCCCT | 15720 | 0.0 | 80.747604 | 1 |
GCTGCCC | 75 | 0.0 | 80.26618 | 3 |
AGCTGCC | 150 | 0.0 | 80.26618 | 2 |
CAGCGTA | 5830 | 0.0 | 79.14018 | 1 |
GCAGCTA | 60 | 0.0 | 78.832855 | 3 |
AGCCCTT | 13290 | 0.0 | 78.55784 | 2 |
GCTGCAT | 50 | 1.8189894E-12 | 77.399536 | 3 |