Basic Statistics
Measure | Value |
---|---|
Filename | 1HL_35A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2630313 |
Sequences flagged as poor quality | 0 |
Sequence length | 92 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 13186 | 0.5013091597844059 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 7304 | 0.2776855834267633 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 6771 | 0.2574218353481125 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 5617 | 0.21354872975193448 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 4947 | 0.18807647606957803 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 4915 | 0.18685989081907742 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 4737 | 0.1800926353631678 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 4701 | 0.17872397695635464 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 4536 | 0.17245095925846088 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 4223 | 0.1605512347770018 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 4091 | 0.15553282061868684 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 3975 | 0.15112269908562215 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 3528 | 0.13412852386769178 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 3475 | 0.13211355454655016 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 3457 | 0.13142922534314358 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 3227 | 0.12268501885517047 | No Hit |
CAGCGATCAAATCGCTTACATTCCCTAATTTAACTCGCAATGCCTCGTCA | 2897 | 0.11013898345938297 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCTGCTT | 45 | 0.0 | 86.0 | 3 |
GCTGCTA | 50 | 0.0 | 86.0 | 3 |
AGCTGCT | 150 | 0.0 | 86.0 | 2 |
GCAGCCG | 25 | 8.359184E-7 | 86.0 | 3 |
AGCAGCC | 140 | 0.0 | 86.0 | 2 |
GCAGCCC | 15 | 9.829662E-4 | 85.99999 | 3 |
GCAGCAC | 60 | 0.0 | 85.99999 | 3 |
CAGCTGC | 610 | 0.0 | 85.29508 | 1 |
AGCTGCA | 175 | 0.0 | 83.542854 | 2 |
CAGCAGC | 615 | 0.0 | 83.20325 | 1 |
AGCTGCC | 235 | 0.0 | 82.34043 | 2 |
GCTGCAA | 95 | 0.0 | 81.47369 | 3 |
GCTGCCC | 170 | 0.0 | 80.94118 | 3 |
CAGCCCT | 15725 | 0.0 | 80.831795 | 1 |
AGCAGCA | 240 | 0.0 | 80.62499 | 2 |
GCTGCAT | 70 | 0.0 | 79.85714 | 3 |
GCTGCAG | 70 | 0.0 | 79.85714 | 3 |
GCTGCCA | 65 | 0.0 | 79.38461 | 3 |
CTGCTGC | 190 | 0.0 | 79.210526 | 1 |
AGCAGCG | 125 | 0.0 | 79.119995 | 2 |