Basic Statistics
Measure | Value |
---|---|
Filename | 1HL_3A_2.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2211401 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCACCGG | 8470 | 0.0 | 80.575516 | 8 |
CACCGGC | 8325 | 0.0 | 76.56629 | 9 |
CTTCACC | 9580 | 0.0 | 73.6893 | 6 |
CCTTCAC | 10360 | 0.0 | 72.400085 | 5 |
CGTAGTG | 1915 | 0.0 | 70.10022 | 4 |
GTGTGGC | 3315 | 0.0 | 67.68095 | 7 |
TTCACCG | 10485 | 0.0 | 67.015526 | 7 |
CAGCGTA | 870 | 0.0 | 63.942814 | 1 |
AACGGGC | 755 | 0.0 | 63.412563 | 5 |
CGGGCCC | 775 | 0.0 | 62.987404 | 7 |
GCGTAGT | 1305 | 0.0 | 61.864285 | 3 |
GGGCCCG | 785 | 0.0 | 61.587082 | 8 |
GGCCCGA | 800 | 0.0 | 60.43233 | 9 |
ACCTTCA | 4485 | 0.0 | 60.28124 | 4 |
TGTGGCA | 3820 | 0.0 | 60.208084 | 8 |
ACGGGCC | 815 | 0.0 | 59.32008 | 6 |
AGCAGCG | 40 | 8.098688E-6 | 58.673492 | 2 |
GCCTTCA | 3010 | 0.0 | 57.385666 | 4 |
CGGGGCA | 1020 | 0.0 | 57.061554 | 94 |
AGCGTAG | 1200 | 0.0 | 56.71771 | 2 |