Basic Statistics
Measure | Value |
---|---|
Filename | 1NF_11A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2266647 |
Sequences flagged as poor quality | 0 |
Sequence length | 96 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 14269 | 0.6295201678955743 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 6154 | 0.2715023556822037 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 5521 | 0.2435756427886654 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 5346 | 0.2358549875653333 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 5133 | 0.22645784720779194 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 4890 | 0.21573716595482223 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 4532 | 0.1999429112693772 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 4104 | 0.1810603944945993 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 4057 | 0.17898684709176152 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 3729 | 0.16451613330174483 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 3722 | 0.16420730709281153 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 3603 | 0.15895726154094572 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 3388 | 0.14947188512370915 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 3329 | 0.14686892136270008 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 2847 | 0.1256040309761511 | No Hit |
CAGCGATCAAATCGCTTACATTCCCTAATTTAACTCGCAATGCCTCGTCA | 2751 | 0.12136870011078037 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 2701 | 0.11916279861839978 | No Hit |
CAGCTACTACCCTTGCACAGCAAGGCATTGCTAATAAGTTATTCAAGCGC | 2587 | 0.11413334321577202 | No Hit |
CAGCACTTTGAACTTTGTTCACCATTTCTTCGTAGTCGTTGATACGTTGT | 2534 | 0.11179508763384859 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CAGCAGC | 300 | 0.0 | 89.99985 | 1 |
GCTGCCG | 15 | 8.205319E-4 | 89.99985 | 3 |
GCTGCCC | 85 | 0.0 | 89.99985 | 3 |
GCTGCAC | 20 | 2.2811786E-5 | 89.99985 | 3 |
CTGCAGC | 40 | 1.4551915E-11 | 89.99985 | 1 |
AGCTGCC | 135 | 0.0 | 89.99985 | 2 |
GCAGCTA | 20 | 2.2811786E-5 | 89.99985 | 3 |
GCAGCCT | 15 | 8.205319E-4 | 89.99985 | 3 |
AGCAGCC | 55 | 0.0 | 89.99985 | 2 |
AGCAGCA | 105 | 0.0 | 89.99985 | 2 |
AGCAGCG | 70 | 0.0 | 89.99984 | 2 |
CAGCTGC | 325 | 0.0 | 85.84601 | 1 |
AGCAGCT | 75 | 0.0 | 83.999855 | 2 |
CAGCCCT | 15150 | 0.0 | 83.3761 | 1 |
CAGCGTA | 4605 | 0.0 | 83.061745 | 1 |
CTGCTGC | 110 | 0.0 | 81.81804 | 1 |
GCTGCTA | 55 | 0.0 | 81.81804 | 3 |
GCCCTTC | 11555 | 0.0 | 81.782646 | 3 |
AGCCCTT | 12850 | 0.0 | 81.63021 | 2 |
CAGCTAG | 3630 | 0.0 | 80.330444 | 1 |