Basic Statistics
Measure | Value |
---|---|
Filename | 1NF_15A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2554324 |
Sequences flagged as poor quality | 0 |
Sequence length | 95 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 14747 | 0.5773347468841071 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 6150 | 0.2407682032506448 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 5840 | 0.22863191983475864 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 5777 | 0.22616551385023984 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 5712 | 0.2236208092630379 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5195 | 0.2033806204694471 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 4892 | 0.19151838216295192 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 4456 | 0.17444928677802815 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 3741 | 0.14645753631880684 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 3714 | 0.1454005051825845 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 3676 | 0.1439128317316049 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 3656 | 0.14312984570477355 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 3509 | 0.137374898407563 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 3380 | 0.13232463853450072 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 3250 | 0.12723522936009685 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 3145 | 0.12312455271923217 | No Hit |
CAGCGATCAAATCGCTTACATTCCCTAATTTAACTCGCAATGCCTCGTCA | 3019 | 0.11819174075019458 | No Hit |
CAGCTACTACCCTTGCACAGCAAGGCATTGCTAATAAGTTATTCAAGCGC | 2999 | 0.11740875472336319 | No Hit |
CTGCGGACCTCCATCAGAGTTTCCTCTGACTTCGTCCTACTCAAGCATAG | 2786 | 0.10906995353760916 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCTGCTT | 30 | 1.9388608E-8 | 88.999725 | 3 |
TGCTGCA | 30 | 1.9388608E-8 | 88.999725 | 2 |
GCAGCTT | 15 | 8.5779617E-4 | 88.999725 | 3 |
GCAGCTA | 20 | 2.4113197E-5 | 88.999725 | 3 |
GCAGCAC | 30 | 1.9388608E-8 | 88.999725 | 3 |
GCTGCAC | 45 | 0.0 | 88.99972 | 3 |
AGCTGCG | 50 | 0.0 | 88.99972 | 2 |
AGCAGCC | 45 | 0.0 | 88.99972 | 2 |
CAGCTGC | 445 | 0.0 | 86.99973 | 1 |
CAGCAGC | 335 | 0.0 | 86.34302 | 1 |
CTGCTGC | 150 | 0.0 | 86.03307 | 1 |
AGCTGCT | 100 | 0.0 | 84.549736 | 2 |
AGCTGCC | 200 | 0.0 | 84.549736 | 2 |
AGCAGCG | 90 | 0.0 | 84.05529 | 2 |
AGCAGCA | 165 | 0.0 | 83.605804 | 2 |
CAGCCCT | 15225 | 0.0 | 83.44637 | 1 |
GCTGCCC | 130 | 0.0 | 82.153595 | 3 |
CAGCGTA | 5030 | 0.0 | 82.09915 | 1 |
AGCTGCA | 110 | 0.0 | 80.90884 | 2 |
GCAGCAT | 55 | 0.0 | 80.90884 | 3 |