Basic Statistics
Measure | Value |
---|---|
Filename | 1NF_18A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 1750070 |
Sequences flagged as poor quality | 0 |
Sequence length | 95 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 11274 | 0.6442028033164388 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 4091 | 0.23376207808830504 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 4032 | 0.23039078436862523 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 3922 | 0.22410532150142567 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 3743 | 0.21387715919934633 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 3652 | 0.2086773671910266 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 3504 | 0.2002205626060672 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 2999 | 0.17136457398846905 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 2989 | 0.17079316827326907 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 2706 | 0.1546223865331101 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 2620 | 0.14970829738239042 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 2594 | 0.1482226425228705 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 2582 | 0.14753695566463057 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 2475 | 0.14142291451199096 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 2202 | 0.12582353848703196 | No Hit |
CAGCGATCAAATCGCTTACATTCCCTAATTTAACTCGCAATGCCTCGTCA | 2147 | 0.12268080705343215 | No Hit |
CAGCACTTTGAACTTTGTTCACCATTTCTTCGTAGTCGTTGATACGTTGT | 2043 | 0.11673818761535253 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 1983 | 0.11330975332415276 | No Hit |
CAGCTACTACCCTTGCACAGCAAGGCATTGCTAATAAGTTATTCAAGCGC | 1913 | 0.10930991331775301 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGCTGC | 45 | 0.0 | 89.0 | 1 |
GCTGCCC | 20 | 2.4110705E-5 | 89.0 | 3 |
GCTGCAT | 20 | 2.4110705E-5 | 89.0 | 3 |
GCAGCTA | 25 | 6.815262E-7 | 89.0 | 3 |
AGCAGCC | 20 | 2.4110705E-5 | 89.0 | 2 |
GCTGCAA | 15 | 8.577405E-4 | 88.99999 | 3 |
TGCTGCA | 15 | 8.577405E-4 | 88.99999 | 2 |
GCAGCTC | 15 | 8.577405E-4 | 88.99999 | 3 |
GCAGCCA | 15 | 8.577405E-4 | 88.99999 | 3 |
GCAGCAC | 15 | 8.577405E-4 | 88.99999 | 3 |
CAGCAGC | 205 | 0.0 | 86.82927 | 1 |
CAGCTGC | 205 | 0.0 | 86.82927 | 1 |
CAGCCCT | 11110 | 0.0 | 83.23222 | 1 |
AGCAGCG | 75 | 0.0 | 83.066666 | 2 |
AGCTGCC | 70 | 0.0 | 82.64286 | 2 |
AGCAGCA | 70 | 0.0 | 82.64286 | 2 |
CAGCGTA | 3565 | 0.0 | 81.88499 | 1 |
AGCCCTT | 9555 | 0.0 | 80.98953 | 2 |
AGCTGCT | 50 | 1.8189894E-12 | 80.1 | 2 |
AGCTGCA | 50 | 1.8189894E-12 | 80.1 | 2 |