Basic Statistics
Measure | Value |
---|---|
Filename | 1NF_20A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2457026 |
Sequences flagged as poor quality | 0 |
Sequence length | 95 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 14303 | 0.5821265220636656 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 6067 | 0.2469245339691155 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 5919 | 0.24090099168669765 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 5727 | 0.233086666563561 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 5496 | 0.2236850566497872 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5018 | 0.2042306430619782 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 4621 | 0.18807289788549245 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 4618 | 0.18795079905544346 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 4148 | 0.16882198234776513 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 3849 | 0.15665279895288042 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 3749 | 0.15258283795124675 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 3639 | 0.1481058808494497 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 3484 | 0.1417974412969175 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 3422 | 0.13927406547590462 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 3243 | 0.1319888352829803 | No Hit |
CAGCGATCAAATCGCTTACATTCCCTAATTTAACTCGCAATGCCTCGTCA | 3048 | 0.12405241132979464 | No Hit |
CAGCTACTACCCTTGCACAGCAAGGCATTGCTAATAAGTTATTCAAGCGC | 2887 | 0.11749977411716442 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 2603 | 0.10594108487252474 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGCTGC | 135 | 0.0 | 88.99986 | 1 |
GCTGCTC | 15 | 8.5778726E-4 | 88.99986 | 3 |
GCTGCCT | 20 | 2.411284E-5 | 88.99986 | 3 |
GCTGCAG | 20 | 2.411284E-5 | 88.99986 | 3 |
GCTGCAC | 30 | 1.9388608E-8 | 88.99986 | 3 |
TGCTGCT | 35 | 5.5479177E-10 | 88.99986 | 2 |
TGCTGCA | 30 | 1.9388608E-8 | 88.99986 | 2 |
GCAGCTT | 20 | 2.411284E-5 | 88.99986 | 3 |
GCAGCCT | 30 | 1.9388608E-8 | 88.99986 | 3 |
GCAGCCG | 30 | 1.9388608E-8 | 88.99986 | 3 |
GCAGCCA | 40 | 1.6370905E-11 | 88.99986 | 3 |
AGCAGCT | 70 | 0.0 | 88.99986 | 2 |
GCTGCCA | 25 | 6.8161535E-7 | 88.999855 | 3 |
TGCTGCC | 50 | 0.0 | 88.999855 | 2 |
GCAGCTC | 25 | 6.8161535E-7 | 88.999855 | 3 |
TGCAGCC | 25 | 6.8161535E-7 | 88.999855 | 2 |
CAGCTGC | 400 | 0.0 | 87.88736 | 1 |
CAGCAGC | 485 | 0.0 | 87.16481 | 1 |
CTGCAGC | 115 | 0.0 | 85.130295 | 1 |
AGCAGCC | 115 | 0.0 | 85.130295 | 2 |