Basic Statistics
Measure | Value |
---|---|
Filename | 1NF_5A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2765984 |
Sequences flagged as poor quality | 0 |
Sequence length | 96 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 13389 | 0.48405919918553403 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 6696 | 0.24208382984138738 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 6516 | 0.2355762000069415 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 5874 | 0.21236565359741777 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 5828 | 0.21070259263972604 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5413 | 0.19569889052142025 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 5368 | 0.19407198306280876 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5058 | 0.18286439834792972 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 4370 | 0.15799079098071428 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 4263 | 0.154122366579127 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 4068 | 0.14707243425847727 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 4019 | 0.1453009128035448 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 3782 | 0.13673253352152437 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 3744 | 0.13535870055647467 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 3479 | 0.12577802330020707 | No Hit |
CAGCGATCAAATCGCTTACATTCCCTAATTTAACTCGCAATGCCTCGTCA | 3456 | 0.12494649282136121 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 3392 | 0.1226326688802249 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCTGCTA | 40 | 1.4551915E-11 | 89.99975 | 3 |
GCTGCCA | 25 | 6.37785E-7 | 89.99975 | 3 |
GCTGCAT | 65 | 0.0 | 89.99975 | 3 |
TGCTGCC | 35 | 5.0749804E-10 | 89.99975 | 2 |
GCAGCAA | 80 | 0.0 | 89.99975 | 3 |
AGCAGCC | 80 | 0.0 | 89.99975 | 2 |
GCAGCCG | 15 | 8.205546E-4 | 89.99974 | 3 |
CAGCTGC | 595 | 0.0 | 89.24345 | 1 |
GCTGCCC | 160 | 0.0 | 87.187256 | 3 |
AGCTGCC | 225 | 0.0 | 85.99976 | 2 |
CTGCAGC | 100 | 0.0 | 85.499756 | 1 |
AGCTGCG | 95 | 0.0 | 85.262924 | 2 |
AGCAGCA | 190 | 0.0 | 85.262924 | 2 |
AGCTGCA | 185 | 0.0 | 85.134895 | 2 |
CAGCAGC | 500 | 0.0 | 84.59976 | 1 |
GCTGCAA | 75 | 0.0 | 83.99976 | 3 |
GCAGCAT | 75 | 0.0 | 83.99976 | 3 |
GCTGCAG | 70 | 0.0 | 83.57119 | 3 |
CAGCCCT | 16030 | 0.0 | 83.51505 | 1 |
CAGCGTA | 6030 | 0.0 | 83.507225 | 1 |