Basic Statistics
Measure | Value |
---|---|
Filename | 1SN_15A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2506325 |
Sequences flagged as poor quality | 0 |
Sequence length | 94 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 14043 | 0.5603024348398552 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 7285 | 0.2906646185151567 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 5815 | 0.23201300709205708 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 5788 | 0.23093573259653077 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 5198 | 0.2073952899165112 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 4779 | 0.19067758570815835 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 4777 | 0.1905977875973786 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 4701 | 0.187565459387749 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 3823 | 0.15253408875544872 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 3697 | 0.14750680777632588 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 3535 | 0.14104316080316798 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 3455 | 0.1378512363719789 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 3429 | 0.13681386093184245 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 3210 | 0.1280759678014623 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 2932 | 0.11698403040308021 | No Hit |
CAGCGATCAAATCGCTTACATTCCCTAATTTAACTCGCAATGCCTCGTCA | 2894 | 0.11546786629826539 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 2815 | 0.11231584092246615 | No Hit |
CAGCTACTACCCTTGCACAGCAAGGCATTGCTAATAAGTTATTCAAGCGC | 2574 | 0.10270016857350903 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCTGCG | 20 | 2.5503636E-5 | 87.99986 | 2 |
AGCTGCC | 75 | 0.0 | 87.99986 | 2 |
GCAGCGG | 40 | 1.8189894E-11 | 87.99986 | 3 |
GCAGCAT | 30 | 2.096931E-8 | 87.99986 | 3 |
TGCAGCT | 15 | 8.971749E-4 | 87.99986 | 2 |
TGCTGCA | 45 | 0.0 | 87.999855 | 2 |
CAGCTGC | 285 | 0.0 | 87.999855 | 1 |
CTGCTGC | 110 | 0.0 | 83.99986 | 1 |
AGCAGCA | 95 | 0.0 | 83.368286 | 2 |
CAGCAGC | 260 | 0.0 | 82.92294 | 1 |
AGCAGCG | 85 | 0.0 | 82.823395 | 2 |
CAGCCCT | 14875 | 0.0 | 82.14306 | 1 |
CAGCGTA | 5575 | 0.0 | 82.08059 | 1 |
CTGCAGC | 70 | 0.0 | 81.71416 | 1 |
AGCTGCT | 110 | 0.0 | 79.99987 | 2 |
GCAGCAA | 55 | 0.0 | 79.99987 | 3 |
AGCCCTT | 12710 | 0.0 | 79.9684 | 2 |
CAGCTCT | 5895 | 0.0 | 78.96849 | 1 |
GCCCTTC | 11485 | 0.0 | 78.88189 | 3 |
CCCTTCA | 11300 | 0.0 | 78.265366 | 4 |