Basic Statistics
Measure | Value |
---|---|
Filename | 1SN_26A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2758873 |
Sequences flagged as poor quality | 0 |
Sequence length | 93 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 15506 | 0.5620410943164111 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 8682 | 0.3146937173258791 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 6569 | 0.2381044723696959 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 5808 | 0.21052074524633793 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 5525 | 0.2002629334514492 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5305 | 0.19228866279817883 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 4998 | 0.1811609305683879 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 4829 | 0.17503524083928473 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 4076 | 0.1477414871942275 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 4055 | 0.14698030681368804 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 4047 | 0.1466903333353873 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 4012 | 0.1454216993678216 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 3931 | 0.14248571790002657 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 3862 | 0.13998469664968266 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 3281 | 0.11892537278809137 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 3146 | 0.11403207034176638 | No Hit |
CAGCTACTACCCTTGCACAGCAAGGCATTGCTAATAAGTTATTCAAGCGC | 2876 | 0.10424546544911636 | No Hit |
CAGCGATCAAATCGCTTACATTCCCTAATTTAACTCGCAATGCCTCGTCA | 2825 | 0.10239688452494913 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCTGCCG | 15 | 9.388564E-4 | 86.99988 | 3 |
GCTGCCC | 95 | 0.0 | 86.99988 | 3 |
GCTGCAG | 30 | 2.2700988E-8 | 86.99988 | 3 |
AGCTGCA | 120 | 0.0 | 86.99988 | 2 |
TGCAGCT | 35 | 6.6393113E-10 | 86.99988 | 2 |
TGCTGCA | 45 | 0.0 | 86.99987 | 2 |
AGCTGCG | 90 | 0.0 | 86.99987 | 2 |
GCAGCCT | 20 | 2.6992171E-5 | 86.99987 | 3 |
GCAGCCG | 25 | 7.8036464E-7 | 86.99987 | 3 |
GCAGCCC | 40 | 2.0008883E-11 | 86.99987 | 3 |
GCAGCAC | 25 | 7.8036464E-7 | 86.99987 | 3 |
CAGCTGC | 550 | 0.0 | 85.41806 | 1 |
AGCTGCC | 195 | 0.0 | 84.76911 | 2 |
AGCAGCA | 175 | 0.0 | 84.51416 | 2 |
CAGCAGC | 495 | 0.0 | 84.36351 | 1 |
AGCAGCC | 95 | 0.0 | 82.42094 | 2 |
AGCAGCG | 170 | 0.0 | 81.88223 | 2 |
CAGCCCT | 16055 | 0.0 | 81.20169 | 1 |
CAGCGTA | 6340 | 0.0 | 80.41313 | 1 |
AGCCCTT | 13460 | 0.0 | 80.180786 | 2 |