Basic Statistics
Measure | Value |
---|---|
Filename | 1SN_28A_2.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2841587 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCACCGG | 11705 | 0.0 | 81.72546 | 8 |
CACCGGC | 11815 | 0.0 | 78.62065 | 9 |
CTTCACC | 13025 | 0.0 | 76.542274 | 6 |
CCTTCAC | 14385 | 0.0 | 73.58025 | 5 |
CGGGCCC | 945 | 0.0 | 72.517975 | 7 |
CGTAGTG | 2690 | 0.0 | 71.19221 | 4 |
GTGTGGC | 4200 | 0.0 | 69.95998 | 7 |
TTCACCG | 14305 | 0.0 | 68.8074 | 7 |
ATGCAGC | 110 | 0.0 | 68.27586 | 2 |
TGCAGCA | 70 | 0.0 | 67.05428 | 3 |
GGGCCCG | 1030 | 0.0 | 66.53348 | 8 |
ACGGGCC | 1045 | 0.0 | 66.02761 | 6 |
GGCCCGA | 1045 | 0.0 | 64.680115 | 9 |
CGGGGCA | 1070 | 0.0 | 64.04625 | 94 |
GCGTAGT | 1875 | 0.0 | 63.33501 | 3 |
ACCTTCA | 6030 | 0.0 | 61.41639 | 4 |
AACGGGC | 1130 | 0.0 | 61.060936 | 5 |
TGTGGCA | 5060 | 0.0 | 60.57414 | 8 |
AGCGTAG | 1560 | 0.0 | 60.17904 | 2 |
CAGCGTA | 1130 | 0.0 | 59.938725 | 1 |