Basic Statistics
Measure | Value |
---|---|
Filename | 1SN_30A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 3840203 |
Sequences flagged as poor quality | 0 |
Sequence length | 93 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 17262 | 0.4495074869739959 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 10422 | 0.2713919029801289 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 7840 | 0.2041558740514499 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 7839 | 0.2041298337613923 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 7191 | 0.1872557258040786 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 6729 | 0.17522511179747527 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5770 | 0.1502524736322533 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5712 | 0.1487421368089135 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 4828 | 0.1257225203980102 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 4800 | 0.12499339227639789 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 4689 | 0.12210292008000619 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 4543 | 0.11830103773159908 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 4514 | 0.11754586931992919 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 4254 | 0.11077539390495764 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 4215 | 0.1097598225927119 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCAGCCG | 25 | 7.804301E-7 | 86.99973 | 3 |
GCAGCAT | 50 | 0.0 | 86.99973 | 3 |
GCTGCCA | 70 | 0.0 | 86.999725 | 3 |
GCTGCAT | 75 | 0.0 | 86.999725 | 3 |
AGCTGCA | 165 | 0.0 | 86.999725 | 2 |
CAGCTGC | 485 | 0.0 | 84.30901 | 1 |
AGCAGCA | 150 | 0.0 | 84.09974 | 2 |
AGCAGCG | 110 | 0.0 | 83.0452 | 2 |
CTGCAGC | 215 | 0.0 | 82.953224 | 1 |
CAGCAGC | 380 | 0.0 | 82.42079 | 1 |
GCTGCAA | 85 | 0.0 | 81.882095 | 3 |
GCAGCAA | 85 | 0.0 | 81.882095 | 3 |
GCTGCCC | 80 | 0.0 | 81.56224 | 3 |
CAGCCCT | 19520 | 0.0 | 81.116554 | 1 |
AGCTGCC | 140 | 0.0 | 80.78545 | 2 |
GCAGCTA | 60 | 0.0 | 79.74975 | 3 |
CAGCGTA | 7900 | 0.0 | 78.90545 | 1 |
AGCCCTT | 16750 | 0.0 | 78.559456 | 2 |
TGCAGCA | 50 | 1.8189894E-12 | 78.29976 | 2 |
CTGCTGC | 300 | 0.0 | 78.29975 | 1 |