Basic Statistics
Measure | Value |
---|---|
Filename | 1SN_4A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 3294871 |
Sequences flagged as poor quality | 0 |
Sequence length | 94 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 15918 | 0.4831145134361861 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 9029 | 0.2740319727236666 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 6444 | 0.1955767008784259 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 6304 | 0.19132767261601438 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 6257 | 0.1899012131279191 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 6161 | 0.18698759374797982 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5694 | 0.17281404947265006 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5547 | 0.16835256979711802 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 4623 | 0.1403089832652022 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 4504 | 0.13669730924215243 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 4500 | 0.13657590843465495 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 4287 | 0.13011131543541463 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 4119 | 0.12501248152052083 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 4086 | 0.1240109248586667 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 4075 | 0.12367707263804864 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCTGCTA | 40 | 1.8189894E-11 | 88.00001 | 3 |
GCTGCCT | 50 | 0.0 | 88.0 | 3 |
GCTGCCG | 15 | 8.971943E-4 | 88.0 | 3 |
GCTGCAC | 35 | 6.0754246E-10 | 88.0 | 3 |
GCAGCAC | 50 | 0.0 | 88.0 | 3 |
CAGCTGC | 470 | 0.0 | 86.12766 | 1 |
AGCAGCA | 210 | 0.0 | 85.90476 | 2 |
AGCTGCC | 120 | 0.0 | 84.33333 | 2 |
AGCTGCA | 115 | 0.0 | 84.173904 | 2 |
AGCAGCG | 115 | 0.0 | 84.173904 | 2 |
TGCTGCC | 90 | 0.0 | 83.111115 | 2 |
CAGCAGC | 525 | 0.0 | 82.97143 | 1 |
AGCTGCT | 170 | 0.0 | 82.82353 | 2 |
GCTGCAA | 80 | 0.0 | 82.50001 | 3 |
CTGCTGC | 240 | 0.0 | 82.5 | 1 |
CTGCAGC | 235 | 0.0 | 82.38298 | 1 |
GCAGCCG | 70 | 0.0 | 81.71429 | 3 |
CAGCCCT | 17635 | 0.0 | 81.61269 | 1 |
CAGCGTA | 7215 | 0.0 | 81.16979 | 1 |
GCAGCGG | 60 | 0.0 | 80.666664 | 3 |