Basic Statistics
Measure | Value |
---|---|
Filename | 1SN_5A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 3000852 |
Sequences flagged as poor quality | 0 |
Sequence length | 94 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 14356 | 0.47839746845229286 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 8273 | 0.2756883711692546 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 5974 | 0.19907679552340468 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 5931 | 0.19764386914116389 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 5644 | 0.18807991863644058 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5148 | 0.17155127943664 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 4967 | 0.16551965908348695 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 4815 | 0.16045443094161257 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 4321 | 0.14399243948052087 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 3994 | 0.13309553420162007 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 3936 | 0.13116274977906273 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 3909 | 0.13026300530649296 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 3881 | 0.12932993696456874 | No Hit |
CTGCGGACCTCCATCAGAGTTTCCTCTGACTTCGTCCTACTCAAGCATAG | 3726 | 0.12416473721463106 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 3644 | 0.12143217992756723 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 3399 | 0.11326783193573026 | No Hit |
CTGCATAACCCTACCCCTAACCCTAATTCCAATGCTAACCCTAACCCTAA | 3207 | 0.10686964901967841 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 3092 | 0.10303740404391819 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CAGCAGC | 360 | 0.0 | 87.999886 | 1 |
GCTGCCC | 90 | 0.0 | 87.999886 | 3 |
GCAGCTC | 15 | 8.971912E-4 | 87.999886 | 3 |
GCAGCCC | 30 | 2.0971129E-8 | 87.999886 | 3 |
GCAGCCA | 35 | 6.0754246E-10 | 87.999886 | 3 |
GCAGCAC | 20 | 2.5504422E-5 | 87.999886 | 3 |
TGCAGCC | 15 | 8.971912E-4 | 87.999886 | 2 |
AGCAGCT | 45 | 0.0 | 87.999886 | 2 |
AGCAGCC | 60 | 0.0 | 87.999886 | 2 |
AGCAGCA | 165 | 0.0 | 85.33322 | 2 |
CAGCTGC | 475 | 0.0 | 83.36832 | 1 |
CTGCTGC | 190 | 0.0 | 83.36831 | 1 |
GCAGCAA | 95 | 0.0 | 83.36831 | 3 |
GCTGCAA | 60 | 0.0 | 80.66656 | 3 |
CAGCCCT | 15740 | 0.0 | 80.39633 | 1 |
CAGCGTA | 6585 | 0.0 | 80.11531 | 1 |
AGCAGCG | 105 | 0.0 | 79.61894 | 2 |
AGCTGCT | 145 | 0.0 | 78.89644 | 2 |
AGCTGCA | 145 | 0.0 | 78.89644 | 2 |
AGCTGCG | 95 | 0.0 | 78.73674 | 2 |