Basic Statistics
Measure | Value |
---|---|
Filename | 1SN_7A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2964594 |
Sequences flagged as poor quality | 0 |
Sequence length | 94 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 13419 | 0.4526420818499936 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 9579 | 0.32311338415985463 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 6542 | 0.2206710261168983 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 5716 | 0.19280886354084234 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 5623 | 0.1896718403936593 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5318 | 0.17938375372816648 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5267 | 0.17766345071196932 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 4835 | 0.16309147222182868 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 4724 | 0.1593472833042231 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 4506 | 0.1519938311957725 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 4423 | 0.14919412236549084 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 4342 | 0.14646187639858949 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 4331 | 0.14609083064999795 | No Hit |
CTGCGGACCTCCATCAGAGTTTCCTCTGACTTCGTCCTACTCAAGCATAG | 4297 | 0.14494396197253318 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 4257 | 0.14359470470492755 | No Hit |
CTGCATAACCCTACCCCTAACCCTAATTCCAATGCTAACCCTAACCCTAA | 3877 | 0.1307767606626742 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 3676 | 0.12399674289295601 | No Hit |
CAGCTGAGTTCAGCTGAAAGAGTACTCTGTCACAGGAAATGTCACAGTGA | 3044 | 0.10267847806478729 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCTGCTA | 55 | 0.0 | 87.999886 | 3 |
GCTGCGT | 20 | 2.550438E-5 | 87.999886 | 3 |
GCTGCCT | 15 | 8.9719007E-4 | 87.999886 | 3 |
GCAGCCG | 50 | 0.0 | 87.999886 | 3 |
GCAGCAC | 35 | 6.0754246E-10 | 87.99988 | 3 |
AGCTGCC | 205 | 0.0 | 85.85354 | 2 |
CAGCAGC | 495 | 0.0 | 85.33322 | 1 |
CAGCTGC | 575 | 0.0 | 84.93902 | 1 |
AGCAGCG | 120 | 0.0 | 84.33322 | 2 |
CTGCAGC | 100 | 0.0 | 83.59989 | 1 |
AGCAGCA | 170 | 0.0 | 82.82342 | 2 |
AGCTGCA | 160 | 0.0 | 82.499886 | 2 |
GCAGCAA | 70 | 0.0 | 81.71417 | 3 |
CAGCGTA | 6600 | 0.0 | 81.399895 | 1 |
CAGCCCT | 16060 | 0.0 | 81.040985 | 1 |
GCTGCCC | 170 | 0.0 | 80.23518 | 3 |
AGCTGCT | 160 | 0.0 | 79.74989 | 2 |
AGCCCTT | 13590 | 0.0 | 79.48481 | 2 |
GCTGCAG | 45 | 5.0931703E-11 | 78.222115 | 3 |
CAGCACT | 6990 | 0.0 | 77.173004 | 1 |