Basic Statistics
Measure | Value |
---|---|
Filename | 1SN_9A_1.fq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 3177205 |
Sequences flagged as poor quality | 0 |
Sequence length | 94 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACATAA | 15560 | 0.48973862246849037 | No Hit |
CAGCGTAGTGTGATCGTCTATAAATTAGGGACGATTTTAGTACGACTGTG | 9451 | 0.2974627070019089 | No Hit |
CAGCACTGGAGCCACTTAAGGGTTTACGGAGCACTTGCCCCGACCTAGTT | 6275 | 0.19750063341836613 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCAAATATTTTCGTGTGAGACGTAA | 6053 | 0.19051336001296737 | No Hit |
CAGCAACGGGCCCGAGCAATTCACATTCCATCCAGAGTTCGTACAAACCA | 5981 | 0.18824721728689212 | No Hit |
CAGCATAAATCCCGATCTCACTATCGTTGGTTACATGCCTATCGTACAAG | 5682 | 0.17883643013277395 | No Hit |
CAGCCCTTCACCGGCATTGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5521 | 0.17376908320363338 | No Hit |
CAGCCCTTCACCGGCAATGGTGACGTCTCCATATGAGTGAAATATTCTCG | 5050 | 0.1589447328705576 | No Hit |
CAGCGTAGTGAGGTCGTGGGAAGAGCGCACGGCGGTCGGGTACTATCGTA | 4432 | 0.13949367447174482 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAAGCCATGAGTGCTCT | 3983 | 0.12536175663830318 | No Hit |
CAGCGTACATTTTGTGGACAAAGAGTGAAAGACAGGTATGTACTGACCAC | 3898 | 0.12268644925335317 | No Hit |
CAGCATGTGTGGCACGCAAAAGTACCCTAAAAAAAGCCATGAGTGCTCTA | 3846 | 0.12104979061785437 | No Hit |
CAGCAGGGTCAGTAGGTAACGATGGGTGTCACGAGTTGCCTAATCAGTGC | 3822 | 0.12029440970916261 | No Hit |
CAGCTCTGTGTATATATAATTAACCGCTTTGGAAACTGCCAGTTCATTTT | 3815 | 0.12007409027746085 | No Hit |
CAGCATGTGTGGCACGCAAAAGAACCCTAAAAAAAGCCATGAGTGCTCTA | 3510 | 0.11047445789616975 | No Hit |
CAGCCTCGGGTTCTGTCTAGGTGGGATCCTCGGTCCAGCGCGGCCGGGGC | 3464 | 0.10902664448784387 | No Hit |
CTGCGGACCTCCATCAGAGTTTCCTCTGACTTCGTCCTACTCAAGCATAG | 3352 | 0.10550153358061566 | No Hit |
CAGCTAGGGTTAGGGCTACAATTAGGGTTAGGGTTGGAATTAGGGTTAGG | 3244 | 0.10210231949150275 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCTGCCT | 35 | 6.0754246E-10 | 87.999886 | 3 |
AGCTGCT | 140 | 0.0 | 87.999886 | 2 |
GCAGCTA | 20 | 2.5504647E-5 | 87.999886 | 3 |
CAGCTGC | 500 | 0.0 | 85.35989 | 1 |
AGCTGCC | 160 | 0.0 | 85.24989 | 2 |
GCTGCCC | 130 | 0.0 | 84.61528 | 3 |
AGCTGCA | 125 | 0.0 | 84.4799 | 2 |
CAGCCCT | 17425 | 0.0 | 81.88914 | 1 |
TGCTGCC | 70 | 0.0 | 81.71418 | 2 |
CAGCAGC | 330 | 0.0 | 81.33323 | 1 |
CAGCGTA | 6810 | 0.0 | 80.37582 | 1 |
CTGCAGC | 110 | 0.0 | 79.99989 | 1 |
TGCAGCA | 55 | 0.0 | 79.99989 | 2 |
AGCCCTT | 14790 | 0.0 | 79.7592 | 2 |
GCTGCAT | 50 | 1.8189894E-12 | 79.1999 | 3 |
CTGCTGC | 190 | 0.0 | 78.73674 | 1 |
GCTGCTT | 45 | 5.0931703E-11 | 78.22212 | 3 |
GCTGCCA | 45 | 5.0931703E-11 | 78.22212 | 3 |
AGCAGCA | 130 | 0.0 | 77.846054 | 2 |
GCCCTTC | 13480 | 0.0 | 77.78329 | 3 |