##########   MethylExtract_1.9 LogFile   ##########

WORKING FEATURES:
Input Directory: /home/srlab/Documents/C-virginica-BSSeq/2112_lane1_ACAGTG/
Multi-Fasta Sequences: /home/srlab/Documents/C-virginica-BSSeq/2112_lane1_ACAGTG//MultiFASTA.fa
Output Directory: /home/srlab/Documents/C-virginica-BSSeq/2112_lane1_ACAGTG/
Elapsed time: 0d : 0h : 0m :31s	Number of threads: 4	Number of chromosomes divisions: 400
Strand tags used: Watson strand 147,99 & Crick strand 163,83
Qscore used: phred33-quals
Output: context=CG	WIG=Y	BED=Y

QUALITY FEATURES:
Duplicated reads deletion: N	Similar nucleotides to consider a duplicated read: 32
First number of positions ignored: 0
Last number of positions ignored: 0
Pair-end overlaping correction: N
Quality filters:
  minQ=30	minDepthMeth=1	minDepthSNV=1
  methNonCpGs=0.9	maxStrandBias=0.7	varFraction=0.05	maxPval=0.01

QUALITY RESULTS:
Deleted duplicated reads: 0
Discarded reads by bisulfite check: 31877
Discarded positions Q<30: 0
Discarded methylation ratios with depth<1: 0
Unchecked variation in positions with depth<1: 0
Discarded SNVs with strand bias over 0.7: 0

SNVs RESULTS:
 SNVs on KV918247.1:
  Homozygous SNVs: 0
  Heterozygous SNVs: 0
 SNVs on KV918246.1:
  Homozygous SNVs: 0
  Heterozygous SNVs: 0
 SNVs on KV918244.1:
  Homozygous SNVs: 0
  Heterozygous SNVs: 0
 SNVs on KV918245.1:
  Homozygous SNVs: 0
  Heterozygous SNVs: 0

Methylation RESULTS: