Basic Statistics
Measure | Value |
---|---|
Filename | trimmed-2112_lane1_ACAGTG_L001_R1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12260444 |
Sequences flagged as poor quality | 0 |
Sequence length | 1-101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC | 54031 | 0.4406936649276323 | No Hit |
AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA | 28473 | 0.2322346564284295 | No Hit |
GTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGT | 16596 | 0.13536214512296618 | No Hit |
GGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGG | 15415 | 0.12572954127925548 | No Hit |
TAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTA | 12636 | 0.10306315170967707 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATCATA | 61535 | 0.0 | 59.174557 | 5 |
TCATAAA | 68050 | 0.0 | 54.799854 | 7 |
ATCATAA | 70355 | 0.0 | 53.552704 | 6 |
TAAATCA | 65155 | 0.0 | 51.165524 | 3 |
AAATCAT | 72245 | 0.0 | 49.598072 | 4 |
CATAAAC | 82930 | 0.0 | 45.22855 | 8 |
AATAAAT | 75675 | 0.0 | 43.92562 | 1 |
AGAGCAC | 11830 | 0.0 | 40.861774 | 94-95 |
ATAAACA | 95890 | 0.0 | 39.345806 | 9 |
ATAAATC | 95175 | 0.0 | 35.00521 | 2 |
AACCGGG | 1350 | 0.0 | 31.563412 | 1 |
ACCGGGC | 1425 | 0.0 | 30.537384 | 2 |
AAGAGCA | 18090 | 0.0 | 29.950396 | 94-95 |
AGCCCCC | 1755 | 0.0 | 29.337788 | 1 |
CACGGGC | 1920 | 0.0 | 29.146465 | 3 |
GAGCACA | 7890 | 0.0 | 28.835567 | 94-95 |
AGCCGCC | 2165 | 0.0 | 28.497278 | 1 |
AAACGGG | 68610 | 0.0 | 27.6956 | 14-15 |
GCCCGTA | 1920 | 0.0 | 27.058596 | 2 |
CAAACGG | 68375 | 0.0 | 26.970442 | 14-15 |