Basic Statistics
Measure | Value |
---|---|
Filename | trimmed-2112_lane1_ATCACG_R1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28381961 |
Sequences flagged as poor quality | 0 |
Sequence length | 1-101 |
%GC | 34 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATCATA | 325315 | 0.0 | 59.554142 | 5 |
ATCATAA | 346715 | 0.0 | 57.72413 | 6 |
CATAAAC | 348050 | 0.0 | 56.987404 | 8 |
TCATAAA | 350045 | 0.0 | 56.791195 | 7 |
TAAATCA | 313425 | 0.0 | 56.47289 | 3 |
AAATCAT | 342885 | 0.0 | 55.30285 | 4 |
ATAAATC | 326735 | 0.0 | 54.066647 | 2 |
ATAAACA | 444920 | 0.0 | 44.7264 | 9 |
AATAAAT | 413790 | 0.0 | 42.646275 | 1 |
AGAGCAC | 18635 | 0.0 | 39.020462 | 94-95 |
AAACGGG | 284305 | 0.0 | 35.40091 | 14-15 |
ACGGGCA | 286255 | 0.0 | 35.01242 | 16-17 |
GGGCAAC | 286795 | 0.0 | 34.509323 | 18-19 |
CAAACGG | 285330 | 0.0 | 34.33726 | 14-15 |
AACGGGC | 284675 | 0.0 | 33.65337 | 16-17 |
CGGGCAA | 285860 | 0.0 | 33.271233 | 18-19 |
GCAACAT | 300435 | 0.0 | 33.014282 | 20-21 |
ACAAACG | 315205 | 0.0 | 32.47816 | 12-13 |
GGCAACA | 296215 | 0.0 | 31.86664 | 20-21 |
CATACCT | 323425 | 0.0 | 30.100002 | 24-25 |