Basic Statistics
Measure | Value |
---|---|
Filename | trimmed-2112_lane1_CAGATC_R1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31266957 |
Sequences flagged as poor quality | 0 |
Sequence length | 1-101 |
%GC | 36 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC | 41139 | 0.13157340511262416 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATCATA | 315975 | 0.0 | 57.443504 | 5 |
TCATAAA | 337190 | 0.0 | 55.323257 | 7 |
ATCATAA | 347235 | 0.0 | 54.124287 | 6 |
TAAATCA | 312650 | 0.0 | 53.110004 | 3 |
AAATCAT | 335795 | 0.0 | 52.955994 | 4 |
CATAAAC | 361815 | 0.0 | 51.541412 | 8 |
ATAAATC | 343770 | 0.0 | 48.142807 | 2 |
AGAGCAC | 33580 | 0.0 | 43.77419 | 94-95 |
AATAAAT | 379970 | 0.0 | 43.46908 | 1 |
ATAAACA | 452225 | 0.0 | 41.392086 | 9 |
ACCGGGC | 2940 | 0.0 | 40.190586 | 2 |
AACCGGG | 3010 | 0.0 | 38.350266 | 1 |
CACGGGC | 3930 | 0.0 | 37.13267 | 3 |
CCGGGCA | 3490 | 0.0 | 35.27268 | 3 |
TACGGCG | 3365 | 0.0 | 34.59829 | 6 |
GAGCACA | 20785 | 0.0 | 34.281116 | 94-95 |
CACACGG | 4155 | 0.0 | 33.489178 | 1 |
ATACGGC | 3480 | 0.0 | 33.193295 | 5 |
CCAACGG | 3515 | 0.0 | 32.34269 | 2 |
AAACGGG | 296455 | 0.0 | 32.05971 | 14-15 |