Basic Statistics
Measure | Value |
---|---|
Filename | trimmed-2112_lane1_GCCAAT_L001_R1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20811265 |
Sequences flagged as poor quality | 0 |
Sequence length | 1-101 |
%GC | 34 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATCATA | 339950 | 0.0 | 63.48357 | 5 |
ATAAATC | 316875 | 0.0 | 62.21085 | 2 |
TAAATCA | 318245 | 0.0 | 62.07293 | 3 |
TCATAAA | 360365 | 0.0 | 61.500896 | 7 |
ATCATAA | 363770 | 0.0 | 61.402653 | 6 |
AAATCAT | 348305 | 0.0 | 60.656498 | 4 |
CATAAAC | 364925 | 0.0 | 60.567898 | 8 |
AATAAAT | 384850 | 0.0 | 51.143833 | 1 |
ATAAACA | 445450 | 0.0 | 49.711617 | 9 |
CACACGG | 2665 | 0.0 | 42.241104 | 1 |
AACCGGG | 1955 | 0.0 | 40.834946 | 1 |
ACACGGG | 2930 | 0.0 | 38.436134 | 2 |
CCAACGG | 2590 | 0.0 | 36.898903 | 2 |
ACCGGGC | 2305 | 0.0 | 35.426975 | 2 |
AGAGCAC | 15920 | 0.0 | 35.39674 | 94-95 |
AAACGGG | 329090 | 0.0 | 34.274906 | 14-15 |
CACGGGC | 3365 | 0.0 | 34.274548 | 3 |
ACAAACG | 337515 | 0.0 | 33.889946 | 12-13 |
CAAACGG | 328340 | 0.0 | 33.278225 | 14-15 |
ACGGGCA | 337595 | 0.0 | 33.251236 | 16-17 |