Basic Statistics
Measure | Value |
---|---|
Filename | trimmed-2112_lane1_TTAGGC_L001_R1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21462840 |
Sequences flagged as poor quality | 0 |
Sequence length | 1-101 |
%GC | 35 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATCATA | 213710 | 0.0 | 54.915443 | 5 |
TCATAAA | 229600 | 0.0 | 52.2619 | 7 |
ATCATAA | 232645 | 0.0 | 51.978386 | 6 |
TAAATCA | 208740 | 0.0 | 51.53756 | 3 |
AAATCAT | 229725 | 0.0 | 50.124886 | 4 |
CATAAAC | 244705 | 0.0 | 48.968822 | 8 |
AGAGCAC | 27635 | 0.0 | 48.707508 | 94-95 |
ATAAATC | 231235 | 0.0 | 46.41229 | 2 |
AACCGGG | 1630 | 0.0 | 46.01625 | 1 |
CACGGGC | 2335 | 0.0 | 42.087654 | 3 |
CCGGGCA | 1935 | 0.0 | 41.784626 | 3 |
GAGCACA | 15535 | 0.0 | 41.54459 | 94-95 |
CACACGG | 2275 | 0.0 | 41.0161 | 1 |
ACCGGGC | 1895 | 0.0 | 40.774418 | 2 |
AATAAAT | 264895 | 0.0 | 40.45922 | 1 |
ATAAACA | 314420 | 0.0 | 38.311584 | 9 |
AGCCCGA | 1440 | 0.0 | 37.205597 | 1 |
CCAACGG | 2210 | 0.0 | 37.18574 | 2 |
AGCCCCC | 2030 | 0.0 | 36.729073 | 1 |
ACACGGG | 2675 | 0.0 | 35.897614 | 2 |