hard-trimmed-2112_lane1_GCCAAT_L001_R1_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.16.3 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 4570127 lines in total Total number of methylation call strings processed: 4570127 Final Cytosine Methylation Report ================================= Total number of C's analysed: 75497653 Total methylated C's in CpG context: 6598800 Total methylated C's in CHG context: 2357385 Total methylated C's in CHH context: 8320024 Total C to T conversions in CpG context: 7152028 Total C to T conversions in CHG context: 15918714 Total C to T conversions in CHH context: 35150702 C methylated in CpG context: 48.0% C methylated in non-CpG context: 17.3%