hard-trimmed-2112_lane1_TGACCA_L001_R1_001_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.16.3 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 623273 lines in total Total number of methylation call strings processed: 623273 Final Cytosine Methylation Report ================================= Total number of C's analysed: 10412368 Total methylated C's in CpG context: 2215432 Total methylated C's in CHG context: 1428445 Total methylated C's in CHH context: 3781284 Total C to T conversions in CpG context: 261842 Total C to T conversions in CHG context: 1215969 Total C to T conversions in CHH context: 1509396 C methylated in CpG context: 89.4% C methylated in non-CpG context: 65.7%