hard-trimmed-2112_lane1_TTAGGC_L001_R1_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.16.3 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 6408819 lines in total Total number of methylation call strings processed: 6408819 Final Cytosine Methylation Report ================================= Total number of C's analysed: 110732531 Total methylated C's in CpG context: 15974869 Total methylated C's in CHG context: 3940972 Total methylated C's in CHH context: 12123466 Total C to T conversions in CpG context: 6493550 Total C to T conversions in CHG context: 24822262 Total C to T conversions in CHH context: 47377412 C methylated in CpG context: 71.1% C methylated in non-CpG context: 18.2%