[seanb80@n2193 alignments]$ /gscratch/srlab/programs/bowtie2-2.1.0/bowtie2 -p 26 -x oly_pacbio.contigs.bt2 -1 /gscratch/srlab/data/CanuTest/smallerInsert/151114_I191_FCH3Y35BCXX_L1_wHAIPI023992-37_1.fq -2 /gscratch/srlab/data/CanuTest/smallerInsert/151114_I191_FCH3Y35BCXX_L1_wHAIPI023992-37_2.fq -S 151114_aligned.sam
61248273 reads; of these:
61248273 (100.00%) were paired; of these:
48302155 (78.86%) aligned concordantly 0 times
4356027 (7.11%) aligned concordantly exactly 1 time
8590091 (14.03%) aligned concordantly >1 times
----
48302155 pairs aligned concordantly 0 times; of these:
541472 (1.12%) aligned discordantly 1 time
----
47760683 pairs aligned 0 times concordantly or discordantly; of these:
95521366 mates make up the pairs; of these:
80084381 (83.84%) aligned 0 times
3215848 (3.37%) aligned exactly 1 time
12221137 (12.79%) aligned >1 times
34.62% overall alignment rate
[seanb80@n2193 alignments]$ /gscratch/srlab/programs/bowtie2-2.1.0/bowtie2 -p 26 -x oly_pacbio.contigs.bt2 -1 /gscratch/srlab/data/CanuTest/smallerInsert/151114_I191_FCH3Y35BCXX_L2_wHAMPI023991-66_1.fq -2 /gscratch/srlab/data/CanuTest/smallerInsert/151114_I191_FCH3Y35BCXX_L2_wHAMPI023991-66_2.fq -S 151114-66_aligned.sam
58749332 reads; of these:
58749332 (100.00%) were paired; of these:
56836795 (96.74%) aligned concordantly 0 times
211727 (0.36%) aligned concordantly exactly 1 time
1700810 (2.90%) aligned concordantly >1 times
----
56836795 pairs aligned concordantly 0 times; of these:
2441437 (4.30%) aligned discordantly 1 time
----
54395358 pairs aligned 0 times concordantly or discordantly; of these:
108790716 mates make up the pairs; of these:
78394432 (72.06%) aligned 0 times
4889980 (4.49%) aligned exactly 1 time
25506304 (23.45%) aligned >1 times
33.28% overall alignment rate
[seanb80@n2193 alignments]$ /gscratch/srlab/programs/bowtie2-2.1.0/bowtie2 -p 26 -x oly_pacbio.contigs.bt2 -1 /gscratch/srlab/data/CanuTest/smallerInsert/151118_I137_FCH3KNJBBXX_L5_wHAXPI023905-96_1.fq -2 /gscratch/srlab/data/CanuTest/smallerInsert/151118_I137_FCH3KNJBBXX_L5_wHAXPI023905-96_2.fq -S 151118-96_aligned.sam
40482782 reads; of these:
40482782 (100.00%) were paired; of these:
28962127 (71.54%) aligned concordantly 0 times
3197188 (7.90%) aligned concordantly exactly 1 time
8323467 (20.56%) aligned concordantly >1 times
----
28962127 pairs aligned concordantly 0 times; of these:
73008 (0.25%) aligned discordantly 1 time
----
28889119 pairs aligned 0 times concordantly or discordantly; of these:
57778238 mates make up the pairs; of these:
51701740 (89.48%) aligned 0 times
1538809 (2.66%) aligned exactly 1 time
4537689 (7.85%) aligned >1 times
36.14% overall alignment rate
[seanb80@n2193 alignments]$ /gscratch/srlab/programs/bowtie2-2.1.0/bowtie2 -p 26 -x oly_pacbio.contigs.bt2 -1 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L3_WHOSTibkDCABDLAAPEI-62_1.fq -2 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L3_WHOSTibkDCABDLAAPEI-62_2.fq -S 160103_62.sam
76114318 reads; of these:
76114318 (100.00%) were paired; of these:
74523544 (97.91%) aligned concordantly 0 times
257235 (0.34%) aligned concordantly exactly 1 time
1333539 (1.75%) aligned concordantly >1 times
----
74523544 pairs aligned concordantly 0 times; of these:
1098101 (1.47%) aligned discordantly 1 time
----
73425443 pairs aligned 0 times concordantly or discordantly; of these:
146850886 mates make up the pairs; of these:
102722206 (69.95%) aligned 0 times
9357854 (6.37%) aligned exactly 1 time
34770826 (23.68%) aligned >1 times
32.52% overall alignment rate
[seanb80@n2193 alignments]$ /gscratch/srlab/programs/bowtie2-2.1.0/bowtie2 -p 26 -x oly_pacbio.contigs.bt2 -1 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L3_WHOSTibkDCACDTAAPEI-75_1.fq -2 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L3_WHOSTibkDCACDTAAPEI-75_2.fq -S 160103_75.sam
33193824 reads; of these:
33193824 (100.00%) were paired; of these:
32693208 (98.49%) aligned concordantly 0 times
121478 (0.37%) aligned concordantly exactly 1 time
379138 (1.14%) aligned concordantly >1 times
----
32693208 pairs aligned concordantly 0 times; of these:
313109 (0.96%) aligned discordantly 1 time
----
32380099 pairs aligned 0 times concordantly or discordantly; of these:
64760198 mates make up the pairs; of these:
44768890 (69.13%) aligned 0 times
4447142 (6.87%) aligned exactly 1 time
15544166 (24.00%) aligned >1 times
32.56% overall alignment rate
[seanb80@n2193 alignments]$ /gscratch/srlab/programs/bowtie2-2.1.0/bowtie2 -p 26 -x oly_pacbio.contigs.bt2 -1 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L4_WHOSTibkDCABDLAAPEI-62_1.fq -2 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L4_WHOSTibkDCABDLAAPEI-62_2.fq -S 160103_I137_FCH3V5YBBXX_L4-62.sam
74772608 reads; of these:
74772608 (100.00%) were paired; of these:
73189329 (97.88%) aligned concordantly 0 times
256537 (0.34%) aligned concordantly exactly 1 time
1326742 (1.77%) aligned concordantly >1 times
----
73189329 pairs aligned concordantly 0 times; of these:
1072696 (1.47%) aligned discordantly 1 time
----
72116633 pairs aligned 0 times concordantly or discordantly; of these:
144233266 mates make up the pairs; of these:
100891188 (69.95%) aligned 0 times
9181648 (6.37%) aligned exactly 1 time
34160430 (23.68%) aligned >1 times
32.53% overall alignment rate
[seanb80@n2193 alignments]$ /gscratch/srlab/programs/bowtie2-2.1.0/bowtie2 -p 26 -x oly_pacbio.contigs.bt2 -1 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L4_WHOSTibkDCACDTAAPEI-75_1.fq -2 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L4_WHOSTibkDCACDTAAPEI-75_2.fq -S 160103_I137_FCH3V5YBBXX_L4_75.sam
31504848 reads; of these:
31504848 (100.00%) were paired; of these:
31015335 (98.45%) aligned concordantly 0 times
118302 (0.38%) aligned concordantly exactly 1 time
371211 (1.18%) aligned concordantly >1 times
----
31015335 pairs aligned concordantly 0 times; of these:
296016 (0.95%) aligned discordantly 1 time
----
30719319 pairs aligned 0 times concordantly or discordantly; of these:
61438638 mates make up the pairs; of these:
42420168 (69.04%) aligned 0 times
4211381 (6.85%) aligned exactly 1 time
14807089 (24.10%) aligned >1 times
32.68% overall alignment rate
[seanb80@n2193 alignments]$ /gscratch/srlab/programs/bowtie2-2.1.0/bowtie2 -p 26 -x oly_pacbio.contigs.bt2 -1 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L5_WHOSTibkDCAADWAAPEI-74_1.fq -2 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L5_WHOSTibkDCAADWAAPEI-74_2.fq -S 160103_I137_FCH3V5YBBXX_L5_74.sam
81999890 reads; of these:
81999890 (100.00%) were paired; of these:
80126239 (97.72%) aligned concordantly 0 times
271971 (0.33%) aligned concordantly exactly 1 time
1601680 (1.95%) aligned concordantly >1 times
----
80126239 pairs aligned concordantly 0 times; of these:
1506806 (1.88%) aligned discordantly 1 time
----
78619433 pairs aligned 0 times concordantly or discordantly; of these:
157238866 mates make up the pairs; of these:
111647450 (71.00%) aligned 0 times
9182951 (5.84%) aligned exactly 1 time
36408465 (23.15%) aligned >1 times
31.92% overall alignment rate
[seanb80@n2193 alignments]$ /gscratch/srlab/programs/bowtie2-2.1.0/bowtie2 -p 26 -x oly_pacbio.contigs.bt2 -1 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L6_WHOSTibkDCAADWAAPEI-74_1.fq -2 /gscratch/srlab/data/CanuTest/largerInsert/160103_I137_FCH3V5YBBXX_L6_WHOSTibkDCAADWAAPEI-74_2.fq -S 160103_I137_FCH3V5YBBXX_L6_74.sam
80404249 reads; of these:
80404249 (100.00%) were paired; of these:
78568206 (97.72%) aligned concordantly 0 times
265284 (0.33%) aligned concordantly exactly 1 time
1570759 (1.95%) aligned concordantly >1 times
----
78568206 pairs aligned concordantly 0 times; of these:
1472647 (1.87%) aligned discordantly 1 time
----
77095559 pairs aligned 0 times concordantly or discordantly; of these:
154191118 mates make up the pairs; of these:
109570559 (71.06%) aligned 0 times
8979905 (5.82%) aligned exactly 1 time
35640654 (23.11%) aligned >1 times
31.86% overall alignment rate