Category | Reads | % | Read Length | Feature Size or Coverage | Analysis |
middle-missing | 1102 | 0.21 | 5241.84 | ± | 2637.76 | 606.03 | ± | 733.65 | bad trimming |
middle-hump | 17953 | 3.38 | 4380.76 | ± | 2307.89 | 72.66 | ± | 244.36 | bad trimming |
no-5-prime | 32488 | 6.11 | 5377.39 | ± | 2220.07 | 59.58 | ± | 232.03 | bad trimming |
no-3-prime | 24153 | 4.54 | 5118.51 | ± | 2340.55 | 76.09 | ± | 257.30 | bad trimming |
low-coverage | 212244 | 39.90 | 3616.23 | ± | 2028.01 | 4.50 | ± | 1.93 | easy to assemble, potential for lower quality consensus |
unique | 45543 | 8.56 | 3448.74 | ± | 1886.86 | 19.99 | ± | 9.20 | easy to assemble, perfect, yay |
repeat-cont | 12538 | 2.36 | 3941.61 | ± | 2503.35 | 346.20 | ± | 349.73 | potential for consensus errors, no impact on assembly |
repeat-dove | 53 | 0.01 | 11933.47 | ± | 3586.68 | 205.70 | ± | 113.55 | hard to assemble, likely won't assemble correctly or even at all |
span-repeat | 71427 | 13.43 | 5827.68 | ± | 1924.04 | 2924.15 | ± | 1965.97 | read spans a large repeat, usually easy to assemble |
uniq-repeat-cont | 94385 | 17.75 | 4896.24 | ± | 1943.10 | | | | should be uniquely placed, low potential for consensus errors, no impact on assembly |
uniq-repeat-dove | 15563 | 2.93 | 6708.05 | ± | 2077.58 | | | | will end contigs, potential to misassemble |
uniq-anchor | 755 | 0.14 | 6895.14 | ± | 2378.84 | 2258.25 | ± | 1873.62 | repeat read, with unique section, probable bad read |