repeatDetect()-- working on 90584 tigs, with 14 threads. Annotating repeats in reads for tig 1/90584. Annotated with 122 overlaps. Scan reads to discard spanned repeats. discard region 18643:19372 - contained in read 345537 12177- 21564 discard region 19342:21559 - contained in read 315603 13278- 27252 discard region 24988:27688 - contained in read 456748 19677- 28566 discard region 35825:36744 - contained in read 219844 30662- 38347 discard region 43449:44365 - contained in read 378001 42342- 48534 discard region 44984:47040 - contained in read 378001 42342- 48534 thickest edges to the repeat regions: saved region 9337:11846 - closest 5' read 279622 ( +4658) 4679:11093 ( -753) saved region 9337:11846 - closest 3' read 339786 ( -4) 9341:15997 ( +4151) saved region 12057:18434 - closest 5' read 339785 ( +607) 11450:16021 ( -2413) saved region 12057:18434 - closest 3' read 345537 ( -120) 12177:21564 ( +3130) search for confused edges: tig 1 read 345537 pos 12177-21564 NOT confused by 3' edge to read 101618 - best edge read 339785 len 3844 erate 0.0172 score 3777.88 - alt edge len 1660 erate 0.0193 score 1627.96 - absdiff 2149.92 percdiff 79.5406 tig 1 read 345537 pos 12177-21564 IS confused by 3' edge to read 212586 - best edge read 339785 len 3844 erate 0.0172 score 3777.88 - alt edge len 2382 erate 0.0198 score 2334.84 - absdiff 1443.05 percdiff 47.2146 tig 1 read 345537 pos 12177-21564 IS confused by 3' edge to read 212588 - best edge read 339785 len 3844 erate 0.0172 score 3777.88 - alt edge len 2385 erate 0.0240 score 2327.76 - absdiff 1450.12 percdiff 47.5011 tig 1 read 345537 pos 12177-21564 IS confused by 3' edge to read 267922 - best edge read 339785 len 3844 erate 0.0172 score 3777.88 - alt edge len 2679 erate 0.0157 score 2636.94 - absdiff 1140.94 percdiff 35.5721 tig 1 read 345537 pos 12177-21564 IS confused by 3' edge to read 389340 - best edge read 339785 len 3844 erate 0.0172 score 3777.88 - alt edge len 3728 erate 0.0164 score 3666.86 - absdiff 111.02 percdiff 2.9826 tig 1 read 345537 pos 12177-21564 IS confused by 3' edge to read 389341 - best edge read 339785 len 3844 erate 0.0172 score 3777.88 - alt edge len 3752 erate 0.0128 score 3703.97 - absdiff 73.91 percdiff 1.9757 tig 1 read 345537 pos 12177-21564 IS confused by 3' edge to read 469385 - best edge read 339785 len 3844 erate 0.0172 score 3777.88 - alt edge len 2437 erate 0.0197 score 2388.99 - absdiff 1388.89 percdiff 45.0436 discard region 9337:11846 - no confusion in best edges saved region 12057:18434 - 6 best edges are potentially confused break tig 1 into up to 3 pieces: 0 11557 unique (length 11557) 11557 18934 repeat (length 7377) 18934 60030 unique (length 41096) Creating Unitig 90584 Creating Unitig 90585 Creating Unitig 90586 For tig 1 unique region 0 11557 - 0/ 13 reads repeat/unique - unitig 90584 created. For tig 1 repeat region 11557 18934 - 6/ 0 reads repeat/unique - unitig 90586 created. For tig 1 unique region 18934 60030 - 0/ 134 reads repeat/unique - unitig 90585 created. Annotating repeats in reads for tig 3/90584. Annotated with 1763 overlaps. Scan reads to discard spanned repeats. discard region 12664:13257 - contained in read 37623 6693- 15402 thickest edges to the repeat regions: saved region 15057:24565 - closest 5' read 188487 ( +267) 14790:23482 ( -1083) saved region 15057:24565 - closest 3' read 331203 ( -45) 15102:28169 ( +3604) saved region 30250:47749 - closest 5' read 413098 ( +5682) 24568:36397 (-11352) saved region 30250:47749 - closest 3' read 128883 ( -8566) 38816:47749 ( +0) search for confused edges: tig 3 read 331203 pos 15102-28169 NOT confused by 3' edge to read 145557 - best edge read 96373 len 8078 erate 0.0322 score 7817.89 - alt edge len 3901 erate 0.0331 score 3771.88 - absdiff 4046.01 percdiff 69.8204 tig 3 read 331203 pos 15102-28169 NOT confused by 3' edge to read 145560 - best edge read 96373 len 8078 erate 0.0322 score 7817.89 - alt edge len 3861 erate 0.0412 score 3701.93 - absdiff 4115.96 percdiff 71.4588 tig 3 read 331203 pos 15102-28169 NOT confused by 3' edge to read 352701 - best edge read 96373 len 8078 erate 0.0322 score 7817.89 - alt edge len 1242 erate 0.0298 score 1204.99 - absdiff 6612.90 percdiff 146.5807 tig 3 read 331203 pos 15102-28169 NOT confused by 3' edge to read 434907 - best edge read 96373 len 8078 erate 0.0322 score 7817.89 - alt edge len 1051 erate 0.0276 score 1021.99 - absdiff 6795.90 percdiff 153.7554 tig 3 read 402066 pos 15164-27719 NOT confused by 3' edge to read 145557 - best edge read 96373 len 8189 erate 0.0397 score 7863.90 - alt edge len 3955 erate 0.0169 score 3888.16 - absdiff 3975.74 percdiff 67.6603 tig 3 read 402066 pos 15164-27719 NOT confused by 3' edge to read 145560 - best edge read 96373 len 8189 erate 0.0397 score 7863.90 - alt edge len 3914 erate 0.0263 score 3811.06 - absdiff 4052.83 percdiff 69.4278 tig 3 read 402066 pos 15164-27719 NOT confused by 3' edge to read 352701 - best edge read 96373 len 8189 erate 0.0397 score 7863.90 - alt edge len 1244 erate 0.0281 score 1209.04 - absdiff 6654.85 percdiff 146.6967 tig 3 read 402066 pos 15164-27719 NOT confused by 3' edge to read 434907 - best edge read 96373 len 8189 erate 0.0397 score 7863.90 - alt edge len 1052 erate 0.0269 score 1023.70 - absdiff 6840.20 percdiff 153.9268 tig 3 read 68781 pos 30629-45884 IS confused by 3' edge to read 96373 - best edge read 128883 len 7068 erate 0.0306 score 6851.72 - alt edge len 6595 erate 0.0378 score 6345.71 - absdiff 506.01 percdiff 7.6683 tig 3 read 68781 pos 30629-45884 NOT confused by 3' edge to read 145557 - best edge read 128883 len 7068 erate 0.0306 score 6851.72 - alt edge len 1743 erate 0.0310 score 1688.97 - absdiff 5162.75 percdiff 120.8978 tig 3 read 68781 pos 30629-45884 NOT confused by 3' edge to read 248892 - best edge read 128883 len 7068 erate 0.0306 score 6851.72 - alt edge len 4540 erate 0.0331 score 4389.73 - absdiff 2461.99 percdiff 43.8021 tig 3 read 128883 pos 38816-47749 IS confused by 5' edge to read 275099 - best edge read 68781 len 7067 erate 0.0306 score 6850.75 - alt edge len 6841 erate 0.0439 score 6540.68 - absdiff 310.07 percdiff 4.6309 tig 3 read 128883 pos 38816-47749 IS confused by 5' edge to read 413098 - best edge read 68781 len 7067 erate 0.0306 score 6850.75 - alt edge len 5660 erate 0.0361 score 5455.67 - absdiff 1395.08 percdiff 22.6723 discard region 15057:24565 - no confusion in best edges saved region 30250:47749 - 3 best edges are potentially confused break tig 3 into up to 2 pieces: 0 29750 unique (length 29750) 29750 47749 repeat (length 17999) Creating Unitig 90587 Creating Unitig 90588 For tig 3 unique region 0 29750 - 0/ 226 reads repeat/unique - unitig 90587 created. For tig 3 repeat region 29750 47749 - 65/ 0 reads repeat/unique - unitig 90588 created. Annotating repeats in reads for tig 6/90584. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 22279:23148 - contained in read 109873 18518- 27319 thickest edges to the repeat regions: saved region 27050:31119 - closest 5' read 491006 ( +2883) 24167:31082 ( -37) saved region 27050:31119 - closest 3' read 223623 ( -22) 27072:32653 ( +1534) saved region 35900:36660 - closest 5' read 285991 ( +8169) 27731:36652 ( -8) saved region 35900:36660 - closest 3' read 384942 ( -78) 35978:38004 ( +1344) saved region 37900:41320 - closest 5' read 258856 ( +0) 37900:40995 ( -325) saved region 37900:41320 - closest 3' read 262138 ( -9) 37909:43661 ( +2341) search for confused edges: discard region 27050:31119 - no confusion in best edges discard region 35900:36660 - no confusion in best edges discard region 37900:41320 - no confusion in best edges Annotating repeats in reads for tig 9/90584. Annotated with 286 overlaps. Scan reads to discard spanned repeats. discard region 9843:7173 - contained in read 12824 4320- 13168 discard region 18701:20480 - contained in read 102256 4364- 21698 thickest edges to the repeat regions: saved region 22355:35047 - closest 5' read 113399 ( +1853) 20502:34998 ( -49) saved region 22355:35047 - closest 3' read 140943 ( -2990) 25345:35052 ( +5) saved region 36588:44553 - closest 5' read 366872 ( +1448) 35140:43540 ( -1013) saved region 36588:44553 - closest 3' read 89822 ( -20) 36608:46295 ( +1742) search for confused edges: discard region 22355:35047 - no confusion in best edges discard region 36588:44553 - no confusion in best edges Annotating repeats in reads for tig 10/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 1:4574 - contained in read 389341 0- 8949 discard region 7675:6508 - contained in read 389341 0- 8949 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13/90584. Annotated with 317 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:12664 - closest 5' read 172177 ( +0) 0:12659 ( -5) saved region 0:12664 - closest 3' read 28789 ( -5757) 5757:12690 ( +26) search for confused edges: tig 13 read 255595 pos 10954-17047 IS confused by 3' edge to read 113399 - best edge read 172177 len 1705 erate 0.0246 score 1663.06 - alt edge len 1693 erate 0.0201 score 1658.97 - absdiff 4.09 percdiff 0.2460 saved region 0:12664 - 1 best edges are potentially confused break tig 13 into up to 2 pieces: 0 13164 repeat (length 13164) 13164 21587 unique (length 8423) Creating Unitig 90589 Creating Unitig 90590 For tig 13 repeat region 0 13164 - 136/ 0 reads repeat/unique - unitig 90589 created. For tig 13 unique region 13164 21587 - 0/ 17 reads repeat/unique - unitig 90590 created. Annotating repeats in reads for tig 16/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 1886:2597 - contained in read 143388 0- 4007 discard region 6015:7964 - contained in read 452157 2060- 9269 discard region 23804:28687 - contained in read 221973 22264- 29653 thickest edges to the repeat regions: saved region 7919:13535 - closest 5' read 95769 ( +2630) 5289:12471 ( -1064) saved region 7919:13535 - closest 3' read 476843 ( -766) 8685:13581 ( +46) search for confused edges: discard region 7919:13535 - no confusion in best edges Annotating repeats in reads for tig 17/90584. Annotated with 197 overlaps. Scan reads to discard spanned repeats. discard region 2984:9753 - contained in read 178116 239- 9753 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18/90584. Annotated with 76 overlaps. Scan reads to discard spanned repeats. discard region 7212:8649 - contained in read 248258 1987- 8649 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 4604:6124 - contained in read 71903 1- 6124 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21/90584. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 0:3209 - contained in read 418900 0- 9442 discard region 3384:6528 - contained in read 418900 0- 9442 discard region 8756:14459 - contained in read 474541 4848- 16329 discard region 36393:38092 - contained in read 377085 33579- 40249 discard region 39019:41669 - contained in read 378717 34355- 42665 discard region 42827:44599 - contained in read 199390 34888- 45290 discard region 50702:51422 - contained in read 205115 44901- 52420 thickest edges to the repeat regions: saved region 44844:50684 - closest 5' read 26926 ( +1161) 43683:50617 ( -67) saved region 44844:50684 - closest 3' read 471052 ( -3) 44847:50707 ( +23) search for confused edges: discard region 44844:50684 - no confusion in best edges Annotating repeats in reads for tig 32/90584. Annotated with 284 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8674:15236 - closest 5' read 420239 ( +12) 8662:13192 ( -2044) saved region 8674:15236 - closest 3' read 7511 ( -1410) 10084:20237 ( +5001) saved region 16844:34836 - closest 5' read 475025 ( +3730) 13114:25337 ( -9499) saved region 16844:34836 - closest 3' read 242555 ( -8358) 25202:36621 ( +1785) search for confused edges: tig 32 read 475025 pos 13114-25337 NOT confused by 3' edge to read 469826 - best edge read 235700 len 6809 erate 0.0121 score 6726.61 - alt edge len 1789 erate 0.0270 score 1740.70 - absdiff 4985.91 percdiff 117.7686 tig 32 read 235700 pos 18539-25549 NOT confused by 3' edge to read 80302 - best edge read 94288 len 6630 erate 0.0149 score 6531.21 - alt edge len 627 erate 0.0193 score 614.90 - absdiff 5916.31 percdiff 165.5813 tig 32 read 235700 pos 18539-25549 NOT confused by 5' edge to read 142747 - best edge read 475025 len 6798 erate 0.0121 score 6715.74 - alt edge len 1731 erate 0.0383 score 1664.70 - absdiff 5051.04 percdiff 120.5435 tig 32 read 235700 pos 18539-25549 NOT confused by 5' edge to read 279561 - best edge read 475025 len 6798 erate 0.0121 score 6715.74 - alt edge len 1727 erate 0.0371 score 1662.93 - absdiff 5052.82 percdiff 120.6114 tig 32 read 235700 pos 18539-25549 NOT confused by 5' edge to read 456241 - best edge read 475025 len 6798 erate 0.0121 score 6715.74 - alt edge len 1039 erate 0.0368 score 1000.76 - absdiff 5714.98 percdiff 148.1234 tig 32 read 235700 pos 18539-25549 NOT confused by 5' edge to read 456243 - best edge read 475025 len 6798 erate 0.0121 score 6715.74 - alt edge len 970 erate 0.0423 score 928.97 - absdiff 5786.78 percdiff 151.3929 tig 32 read 235700 pos 18539-25549 NOT confused by 5' edge to read 514505 - best edge read 475025 len 6798 erate 0.0121 score 6715.74 - alt edge len 2377 erate 0.0296 score 2306.64 - absdiff 4409.10 percdiff 97.7370 tig 32 read 94288 pos 18949-26965 NOT confused by 3' edge to read 514505 - best edge read 235700 len 6600 erate 0.0149 score 6501.66 - alt edge len 1971 erate 0.0396 score 1892.95 - absdiff 4608.71 percdiff 109.8017 tig 32 read 173856 pos 19616-27895 NOT confused by 3' edge to read 80302 - best edge read 479839 len 6470 erate 0.0135 score 6382.66 - alt edge len 2991 erate 0.0197 score 2932.08 - absdiff 3450.58 percdiff 74.0886 tig 32 read 479839 pos 21443-32203 NOT confused by 3' edge to read 80302 - best edge read 384565 len 10658 erate 0.0151 score 10497.06 - alt edge len 7285 erate 0.0162 score 7166.98 - absdiff 3330.08 percdiff 37.7046 tig 32 read 479839 pos 21443-32203 NOT confused by 3' edge to read 82422 - best edge read 384565 len 10658 erate 0.0151 score 10497.06 - alt edge len 1453 erate 0.0372 score 1398.95 - absdiff 9098.12 percdiff 152.9608 tig 32 read 479839 pos 21443-32203 NOT confused by 3' edge to read 153482 - best edge read 384565 len 10658 erate 0.0151 score 10497.06 - alt edge len 2963 erate 0.0159 score 2915.89 - absdiff 7581.18 percdiff 113.0426 tig 32 read 479839 pos 21443-32203 NOT confused by 3' edge to read 153483 - best edge read 384565 len 10658 erate 0.0151 score 10497.06 - alt edge len 2969 erate 0.0159 score 2921.79 - absdiff 7575.27 percdiff 112.9049 tig 32 read 479839 pos 21443-32203 NOT confused by 3' edge to read 464788 - best edge read 384565 len 10658 erate 0.0151 score 10497.06 - alt edge len 1653 erate 0.0342 score 1596.47 - absdiff 8900.60 percdiff 147.1960 tig 32 read 384565 pos 21550-34327 IS confused by 5' edge to read 80302 - best edge read 452001 len 11393 erate 0.0120 score 11256.28 - alt edge len 9420 erate 0.0107 score 9319.21 - absdiff 1937.08 percdiff 18.8290 tig 32 read 384565 pos 21550-34327 NOT confused by 5' edge to read 153482 - best edge read 452001 len 11393 erate 0.0120 score 11256.28 - alt edge len 5078 erate 0.0098 score 5028.24 - absdiff 6228.05 percdiff 76.4904 tig 32 read 384565 pos 21550-34327 NOT confused by 5' edge to read 153483 - best edge read 452001 len 11393 erate 0.0120 score 11256.28 - alt edge len 5084 erate 0.0104 score 5031.13 - absdiff 6225.16 percdiff 76.4413 tig 32 read 384565 pos 21550-34327 NOT confused by 5' edge to read 464788 - best edge read 452001 len 11393 erate 0.0120 score 11256.28 - alt edge len 3774 erate 0.0170 score 3709.84 - absdiff 7546.44 percdiff 100.8470 discard region 8674:15236 - no confusion in best edges saved region 16844:34836 - 1 best edges are potentially confused break tig 32 into up to 3 pieces: 0 16344 unique (length 16344) 16344 35336 repeat (length 18992) 35336 41971 unique (length 6635) Creating Unitig 90591 Creating Unitig 90592 Creating Unitig 90593 For tig 32 unique region 0 16344 - 0/ 57 reads repeat/unique - unitig 90591 created. For tig 32 repeat region 16344 35336 - 209/ 0 reads repeat/unique - unitig 90592 created. For tig 32 unique region 35336 41971 - 0/ 18 reads repeat/unique - unitig 90593 created. Annotating repeats in reads for tig 35/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 924:6768 - contained in read 471051 78- 6768 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 37/90584. Annotated with 349 overlaps. Scan reads to discard spanned repeats. discard region 38415:43474 - contained in read 497795 37203- 45304 thickest edges to the repeat regions: saved region 2897:30179 - closest 5' read 418089 ( +2022) 875:8160 (-22019) saved region 2897:30179 - closest 3' read 393914 (-17453) 20350:30308 ( +129) saved region 35119:38452 - closest 5' read 430048 ( +3238) 31881:37109 ( -1343) saved region 35119:38452 - closest 3' read 48075 ( -5) 35124:43295 ( +4843) saved region 43813:53102 - closest 5' read 497795 ( +6610) 37203:45304 ( -7798) saved region 43813:53102 - closest 3' read 356493 ( -2214) 46027:53108 ( +6) search for confused edges: tig 37 read 30480 pos 4977-12826 IS confused by 5' edge to read 217009 - best edge read 270003 len 4072 erate 0.0231 score 3977.94 - alt edge len 3190 erate 0.0407 score 3060.17 - absdiff 917.77 percdiff 26.0800 tig 37 read 131923 pos 8960-15947 NOT confused by 5' edge to read 374027 - best edge read 270003 len 6561 erate 0.0396 score 6301.18 - alt edge len 2825 erate 0.0266 score 2749.86 - absdiff 3551.33 percdiff 78.4734 tig 37 read 131923 pos 8960-15947 NOT confused by 5' edge to read 374028 - best edge read 270003 len 6561 erate 0.0396 score 6301.18 - alt edge len 2819 erate 0.0257 score 2746.55 - absdiff 3554.63 percdiff 78.5751 tig 37 read 235642 pos 15186-24258 IS confused by 5' edge to read 229963 - best edge read 131923 len 761 erate 0.0250 score 741.98 - alt edge len 572 erate 0.0317 score 553.87 - absdiff 188.11 percdiff 29.0324 tig 37 read 235642 pos 15186-24258 IS confused by 5' edge to read 229966 - best edge read 131923 len 761 erate 0.0250 score 741.98 - alt edge len 573 erate 0.0423 score 548.76 - absdiff 193.21 percdiff 29.9384 tig 37 read 235642 pos 15186-24258 NOT confused by 3' edge to read 369399 - best edge read 166593 len 8194 erate 0.0255 score 7985.05 - alt edge len 1557 erate 0.0324 score 1506.55 - absdiff 6478.50 percdiff 136.5101 tig 37 read 235642 pos 15186-24258 NOT confused by 3' edge to read 369400 - best edge read 166593 len 8194 erate 0.0255 score 7985.05 - alt edge len 1555 erate 0.0350 score 1500.58 - absdiff 6484.48 percdiff 136.7222 tig 37 read 166593 pos 16094-26082 NOT confused by 5' edge to read 414065 - best edge read 235642 len 8164 erate 0.0255 score 7955.82 - alt edge len 1950 erate 0.0181 score 1914.70 - absdiff 6041.11 percdiff 122.4072 tig 37 read 261805 pos 44109-48898 IS confused by 5' edge to read 221039 - best edge read 251247 len 3085 erate 0.0232 score 3013.43 - alt edge len 1391 erate 0.0342 score 1343.43 - absdiff 1670.00 percdiff 76.6608 tig 37 read 261805 pos 44109-48898 IS confused by 5' edge to read 393351 - best edge read 251247 len 3085 erate 0.0232 score 3013.43 - alt edge len 2514 erate 0.0234 score 2455.17 - absdiff 558.26 percdiff 20.4168 tig 37 read 261805 pos 44109-48898 IS confused by 5' edge to read 393354 - best edge read 251247 len 3085 erate 0.0232 score 3013.43 - alt edge len 2503 erate 0.0236 score 2443.93 - absdiff 569.50 percdiff 20.8709 tig 37 read 261805 pos 44109-48898 IS confused by 5' edge to read 475151 - best edge read 251247 len 3085 erate 0.0232 score 3013.43 - alt edge len 3065 erate 0.0223 score 2996.65 - absdiff 16.78 percdiff 0.5583 tig 37 read 261805 pos 44109-48898 IS confused by 5' edge to read 475152 - best edge read 251247 len 3085 erate 0.0232 score 3013.43 - alt edge len 3076 erate 0.0193 score 3016.63 - absdiff 3.21 percdiff 0.1063 tig 37 read 443100 pos 51057-58263 IS confused by 5' edge to read 475151 - best edge read 356494 len 2042 erate 0.0271 score 1986.66 - alt edge len 686 erate 0.0204 score 672.01 - absdiff 1314.66 percdiff 98.8959 tig 37 read 443100 pos 51057-58263 IS confused by 5' edge to read 475152 - best edge read 356494 len 2042 erate 0.0271 score 1986.66 - alt edge len 678 erate 0.0147 score 668.03 - absdiff 1318.63 percdiff 99.3431 saved region 2897:30179 - 3 best edges are potentially confused discard region 35119:38452 - no confusion in best edges saved region 43813:53102 - 7 best edges are potentially confused break tig 37 into up to 5 pieces: 0 2397 unique (length 2397) 2397 30679 repeat (length 28282) 30679 43313 unique (length 12634) 43313 53602 repeat (length 10289) 53602 66999 unique (length 13397) Creating Unitig 90594 Creating Unitig 90595 Creating Unitig 90596 Creating Unitig 90597 Creating Unitig 90598 For tig 37 unique region 0 2397 - 0/ 6 reads repeat/unique - unitig 90594 created. For tig 37 repeat region 2397 30679 - 105/ 0 reads repeat/unique - unitig 90595 created. For tig 37 unique region 30679 43313 - 0/ 31 reads repeat/unique - unitig 90596 created. For tig 37 repeat region 43313 53602 - 33/ 0 reads repeat/unique - unitig 90597 created. For tig 37 unique region 53602 66999 - 0/ 16 reads repeat/unique - unitig 90598 created. Annotating repeats in reads for tig 38/90584. Annotated with 149 overlaps. Scan reads to discard spanned repeats. discard region 18418:21239 - contained in read 358288 12410- 22939 discard region 21746:22661 - contained in read 391195 12635- 24854 discard region 22658:28803 - contained in read 481140 20238- 33941 discard region 40429:44346 - contained in read 386279 36923- 45266 thickest edges to the repeat regions: saved region 3723:12839 - closest 5' read 42280 ( +3723) 0:5421 ( -7418) saved region 3723:12839 - closest 3' read 516624 ( -655) 4378:12992 ( +153) saved region 29086:34090 - closest 5' read 481141 ( +8756) 20330:33949 ( -141) saved region 29086:34090 - closest 3' read 313342 ( -2037) 31123:39213 ( +5123) search for confused edges: tig 38 read 516624 pos 4378-12992 NOT confused by 3' edge to read 57717 - best edge read 347809 len 6899 erate 0.0139 score 6803.10 - alt edge len 537 erate 0.0356 score 517.88 - absdiff 6285.22 percdiff 171.7042 tig 38 read 347809 pos 4382-11277 NOT confused by 3' edge to read 57717 - best edge read 338999 len 5997 erate 0.0122 score 5923.84 - alt edge len 535 erate 0.0393 score 513.97 - absdiff 5409.86 percdiff 168.0653 tig 38 read 347809 pos 4382-11277 NOT confused by 5' edge to read 226982 - best edge read 516624 len 6894 erate 0.0139 score 6798.17 - alt edge len 627 erate 0.0367 score 603.99 - absdiff 6194.18 percdiff 167.3615 discard region 3723:12839 - no confusion in best edges discard region 29086:34090 - no confusion in best edges Annotating repeats in reads for tig 39/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 41/90584. Annotated with 65 overlaps. Scan reads to discard spanned repeats. discard region 362:1130 - contained in read 269548 0- 4854 discard region 2884:2218 - contained in read 269548 0- 4854 discard region 8378:9497 - contained in read 295822 1789- 10842 discard region 9695:10317 - contained in read 295822 1789- 10842 discard region 11901:15779 - contained in read 507446 8547- 17113 discard region 24308:24994 - contained in read 215777 19453- 25808 thickest edges to the repeat regions: saved region 16095:20715 - closest 5' read 186129 ( +3138) 12957:20714 ( -1) saved region 16095:20715 - closest 3' read 70466 ( -1160) 17255:21589 ( +874) search for confused edges: discard region 16095:20715 - no confusion in best edges Annotating repeats in reads for tig 44/90584. Annotated with 119 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:15322 - closest 5' read 80302 ( +0) 0:13961 ( -1361) saved region 0:15322 - closest 3' read 464788 ( -5666) 5666:15347 ( +25) search for confused edges: tig 44 read 464788 pos 5666-15347 NOT confused by 5' edge to read 384565 - best edge read 80302 len 8290 erate 0.0147 score 8168.14 - alt edge len 3758 erate 0.0170 score 3694.11 - absdiff 4474.02 percdiff 75.4330 tig 44 read 464788 pos 5666-15347 NOT confused by 5' edge to read 452001 - best edge read 80302 len 8290 erate 0.0147 score 8168.14 - alt edge len 3947 erate 0.0152 score 3887.01 - absdiff 4281.13 percdiff 71.0258 tig 44 read 464788 pos 5666-15347 NOT confused by 5' edge to read 479839 - best edge read 80302 len 8290 erate 0.0147 score 8168.14 - alt edge len 1637 erate 0.0342 score 1581.01 - absdiff 6587.12 percdiff 135.1322 discard region 0:15322 - no confusion in best edges Annotating repeats in reads for tig 45/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 8511:7609 - contained in read 167167 3388- 8269 discard region 13182:21148 - contained in read 140272 8611- 28290 discard region 29375:30837 - contained in read 498888 26818- 33012 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 48/90584. Annotated with 114 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3101:29903 - closest 5' read 221039 ( +3101) 0:8433 (-21470) saved region 3101:29903 - closest 3' read 159811 (-22948) 26049:35431 ( +5528) search for confused edges: tig 48 read 221039 pos 0-8433 IS confused by 3' edge to read 261805 - best edge read 419261 len 2662 erate 0.0225 score 2602.11 - alt edge len 1376 erate 0.0342 score 1328.94 - absdiff 1273.16 percdiff 64.7748 tig 48 read 465693 pos 13115-21096 NOT confused by 3' edge to read 151706 - best edge read 265066 len 6855 erate 0.0080 score 6800.16 - alt edge len 824 erate 0.0271 score 801.67 - absdiff 5998.49 percdiff 157.8170 tig 48 read 265066 pos 14241-22048 NOT confused by 3' edge to read 3304 - best edge read 465693 len 6863 erate 0.0080 score 6808.10 - alt edge len 1933 erate 0.0273 score 1880.23 - absdiff 4927.87 percdiff 113.4365 tig 48 read 265066 pos 14241-22048 NOT confused by 3' edge to read 3305 - best edge read 465693 len 6863 erate 0.0080 score 6808.10 - alt edge len 2031 erate 0.0301 score 1969.87 - absdiff 4838.23 percdiff 110.2358 tig 48 read 265066 pos 14241-22048 NOT confused by 5' edge to read 151706 - best edge read 315096 len 7621 erate 0.0130 score 7521.93 - alt edge len 1766 erate 0.0153 score 1738.98 - absdiff 5782.95 percdiff 124.8894 tig 48 read 265066 pos 14241-22048 IS confused by 3' edge to read 459057 - best edge read 465693 len 6863 erate 0.0080 score 6808.10 - alt edge len 6272 erate 0.0248 score 6116.45 - absdiff 691.64 percdiff 10.7028 tig 48 read 315096 pos 14427-22623 NOT confused by 3' edge to read 3304 - best edge read 265066 len 7646 erate 0.0130 score 7546.60 - alt edge len 1758 erate 0.0407 score 1686.45 - absdiff 5860.15 percdiff 126.9386 tig 48 read 315096 pos 14427-22623 NOT confused by 3' edge to read 3305 - best edge read 265066 len 7646 erate 0.0130 score 7546.60 - alt edge len 1851 erate 0.0436 score 1770.30 - absdiff 5776.31 percdiff 123.9963 tig 48 read 315096 pos 14427-22623 NOT confused by 5' edge to read 151706 - best edge read 105676 len 7873 erate 0.0294 score 7641.53 - alt edge len 2322 erate 0.0191 score 2277.65 - absdiff 5363.88 percdiff 108.1517 tig 48 read 315096 pos 14427-22623 IS confused by 3' edge to read 459057 - best edge read 265066 len 7646 erate 0.0130 score 7546.60 - alt edge len 6107 erate 0.0313 score 5915.85 - absdiff 1630.75 percdiff 24.2267 tig 48 read 105676 pos 14750-22911 NOT confused by 5' edge to read 3304 - best edge read 315096 len 7763 erate 0.0294 score 7534.77 - alt edge len 1402 erate 0.0143 score 1381.95 - absdiff 6152.82 percdiff 138.0063 tig 48 read 105676 pos 14750-22911 NOT confused by 5' edge to read 3305 - best edge read 315096 len 7763 erate 0.0294 score 7534.77 - alt edge len 1499 erate 0.0188 score 1470.82 - absdiff 6063.95 percdiff 134.6708 tig 48 read 105676 pos 14750-22911 NOT confused by 3' edge to read 129465 - best edge read 127921 len 6011 erate 0.0231 score 5872.15 - alt edge len 868 erate 0.0409 score 832.50 - absdiff 5039.65 percdiff 150.3330 tig 48 read 105676 pos 14750-22911 NOT confused by 3' edge to read 151706 - best edge read 127921 len 6011 erate 0.0231 score 5872.15 - alt edge len 2711 erate 0.0252 score 2642.68 - absdiff 3229.46 percdiff 75.8550 tig 48 read 105676 pos 14750-22911 IS confused by 5' edge to read 459057 - best edge read 315096 len 7763 erate 0.0294 score 7534.77 - alt edge len 5676 erate 0.0189 score 5568.72 - absdiff 1966.04 percdiff 30.0079 tig 48 read 127921 pos 16900-23489 NOT confused by 5' edge to read 129465 - best edge read 234300 len 6496 erate 0.0139 score 6405.71 - alt edge len 1380 erate 0.0225 score 1348.95 - absdiff 5056.76 percdiff 130.4186 tig 48 read 127921 pos 16900-23489 NOT confused by 5' edge to read 151706 - best edge read 234300 len 6496 erate 0.0139 score 6405.71 - alt edge len 3234 erate 0.0167 score 3179.99 - absdiff 3225.71 percdiff 67.3026 tig 48 read 127921 pos 16900-23489 NOT confused by 3' edge to read 459057 - best edge read 105676 len 6069 erate 0.0231 score 5928.81 - alt edge len 3586 erate 0.0292 score 3481.29 - absdiff 2447.52 percdiff 52.0190 tig 48 read 234300 pos 16993-24316 NOT confused by 5' edge to read 129465 - best edge read 234299 len 6276 erate 0.0128 score 6195.67 - alt edge len 2230 erate 0.0171 score 2191.87 - absdiff 4003.80 percdiff 95.4703 tig 48 read 234300 pos 16993-24316 NOT confused by 5' edge to read 151706 - best edge read 234299 len 6276 erate 0.0128 score 6195.67 - alt edge len 4078 erate 0.0142 score 4020.09 - absdiff 2175.57 percdiff 42.5925 tig 48 read 234300 pos 16993-24316 NOT confused by 3' edge to read 459057 - best edge read 127921 len 6476 erate 0.0139 score 6385.98 - alt edge len 3473 erate 0.0358 score 3348.67 - absdiff 3037.32 percdiff 62.4022 tig 48 read 234300 pos 16993-24316 NOT confused by 5' edge to read 514213 - best edge read 234299 len 6276 erate 0.0128 score 6195.67 - alt edge len 1150 erate 0.0201 score 1126.88 - absdiff 5068.78 percdiff 138.4430 tig 48 read 234299 pos 18040-24377 NOT confused by 3' edge to read 129465 - best edge read 393731 len 5462 erate 0.0101 score 5406.83 - alt edge len 2262 erate 0.0128 score 2233.05 - absdiff 3173.79 percdiff 83.0847 tig 48 read 234299 pos 18040-24377 IS confused by 3' edge to read 151706 - best edge read 393731 len 5462 erate 0.0101 score 5406.83 - alt edge len 4118 erate 0.0105 score 4074.76 - absdiff 1332.07 percdiff 28.0981 tig 48 read 234299 pos 18040-24377 NOT confused by 5' edge to read 459057 - best edge read 234300 len 6306 erate 0.0128 score 6225.28 - alt edge len 2450 erate 0.0243 score 2390.47 - absdiff 3834.82 percdiff 89.0188 tig 48 read 234299 pos 18040-24377 NOT confused by 3' edge to read 514213 - best edge read 393731 len 5462 erate 0.0101 score 5406.83 - alt edge len 1183 erate 0.0135 score 1167.03 - absdiff 4239.80 percdiff 128.9897 tig 48 read 393731 pos 18915-24682 NOT confused by 3' edge to read 129465 - best edge read 393730 len 5741 erate 0.0091 score 5688.76 - alt edge len 2576 erate 0.0101 score 2549.98 - absdiff 3138.77 percdiff 76.1955 tig 48 read 393731 pos 18915-24682 IS confused by 3' edge to read 151706 - best edge read 393730 len 5741 erate 0.0091 score 5688.76 - alt edge len 4428 erate 0.0099 score 4384.16 - absdiff 1304.59 percdiff 25.9030 tig 48 read 393731 pos 18915-24682 NOT confused by 5' edge to read 459057 - best edge read 234299 len 5445 erate 0.0101 score 5390.01 - alt edge len 1569 erate 0.0217 score 1534.95 - absdiff 3855.05 percdiff 111.3379 tig 48 read 393731 pos 18915-24682 NOT confused by 3' edge to read 514213 - best edge read 393730 len 5741 erate 0.0091 score 5688.76 - alt edge len 1501 erate 0.0120 score 1482.99 - absdiff 4205.77 percdiff 117.2872 tig 48 read 393730 pos 18941-24722 NOT confused by 5' edge to read 129465 - best edge read 393732 len 5765 erate 0.0071 score 5724.07 - alt edge len 2612 erate 0.0088 score 2589.01 - absdiff 3135.05 percdiff 75.4246 tig 48 read 393730 pos 18941-24722 IS confused by 5' edge to read 151706 - best edge read 393732 len 5765 erate 0.0071 score 5724.07 - alt edge len 4464 erate 0.0094 score 4422.04 - absdiff 1302.03 percdiff 25.6656 tig 48 read 393730 pos 18941-24722 NOT confused by 3' edge to read 459057 - best edge read 393731 len 5748 erate 0.0089 score 5696.84 - alt edge len 1548 erate 0.0194 score 1517.97 - absdiff 4178.87 percdiff 115.8415 tig 48 read 393730 pos 18941-24722 NOT confused by 5' edge to read 514213 - best edge read 393732 len 5765 erate 0.0071 score 5724.07 - alt edge len 1535 erate 0.0156 score 1511.05 - absdiff 4213.01 percdiff 116.4601 tig 48 read 393732 pos 18957-24711 NOT confused by 5' edge to read 129465 - best edge read 416547 len 5730 erate 0.0141 score 5649.21 - alt edge len 2604 erate 0.0115 score 2574.05 - absdiff 3075.15 percdiff 74.7916 tig 48 read 393732 pos 18957-24711 IS confused by 5' edge to read 151706 - best edge read 416547 len 5730 erate 0.0141 score 5649.21 - alt edge len 4456 erate 0.0103 score 4410.10 - absdiff 1239.10 percdiff 24.6360 tig 48 read 393732 pos 18957-24711 NOT confused by 3' edge to read 459057 - best edge read 393730 len 5753 erate 0.0071 score 5712.15 - alt edge len 1528 erate 0.0203 score 1496.98 - absdiff 4215.17 percdiff 116.9397 tig 48 read 393732 pos 18957-24711 NOT confused by 5' edge to read 514213 - best edge read 416547 len 5730 erate 0.0141 score 5649.21 - alt edge len 1532 erate 0.0144 score 1509.94 - absdiff 4139.27 percdiff 115.6358 tig 48 read 416547 pos 18981-24813 NOT confused by 3' edge to read 129465 - best edge read 245859 len 5407 erate 0.0126 score 5338.87 - alt edge len 2726 erate 0.0088 score 2702.01 - absdiff 2636.86 percdiff 65.5863 tig 48 read 416547 pos 18981-24813 IS confused by 3' edge to read 151706 - best edge read 245859 len 5407 erate 0.0126 score 5338.87 - alt edge len 4565 erate 0.0116 score 4512.05 - absdiff 826.83 percdiff 16.7868 tig 48 read 416547 pos 18981-24813 NOT confused by 5' edge to read 459057 - best edge read 393732 len 5733 erate 0.0141 score 5652.16 - alt edge len 1498 erate 0.0227 score 1464.00 - absdiff 4188.17 percdiff 117.7087 tig 48 read 416547 pos 18981-24813 NOT confused by 3' edge to read 514213 - best edge read 245859 len 5407 erate 0.0126 score 5338.87 - alt edge len 1643 erate 0.0152 score 1618.03 - absdiff 3720.85 percdiff 106.9685 tig 48 read 245859 pos 19406-27192 IS confused by 5' edge to read 369576 - best edge read 159811 len 1143 erate 0.0255 score 1113.85 - alt edge len 506 erate 0.0120 score 499.93 - absdiff 613.93 percdiff 76.0853 tig 48 read 245859 pos 19406-27192 NOT confused by 3' edge to read 459057 - best edge read 416547 len 5410 erate 0.0126 score 5341.83 - alt edge len 1070 erate 0.0215 score 1047.00 - absdiff 4294.84 percdiff 134.4484 tig 48 read 245859 pos 19406-27192 IS confused by 5' edge to read 499363 - best edge read 159811 len 1143 erate 0.0255 score 1113.85 - alt edge len 524 erate 0.0213 score 512.84 - absdiff 601.01 percdiff 73.8941 saved region 3101:29903 - 11 best edges are potentially confused break tig 48 into up to 3 pieces: 0 2601 unique (length 2601) 2601 30403 repeat (length 27802) 30403 36562 unique (length 6159) Creating Unitig 90599 Creating Unitig 90600 Creating Unitig 90601 For tig 48 unique region 0 2601 - 0/ 2 reads repeat/unique - unitig 90599 created. For tig 48 repeat region 2601 30403 - 128/ 0 reads repeat/unique - unitig 90600 created. For tig 48 unique region 30403 36562 - 0/ 4 reads repeat/unique - unitig 90601 created. Annotating repeats in reads for tig 49/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 5633:4036 - contained in read 281396 0- 6085 discard region 7583:8856 - contained in read 286699 4696- 10713 discard region 11866:12896 - contained in read 252516 6928- 13764 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 53/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 55/90584. Annotated with 365 overlaps. Scan reads to discard spanned repeats. discard region 13852:16261 - contained in read 333761 9173- 17399 discard region 38033:39550 - contained in read 269661 35820- 41853 discard region 39752:43472 - contained in read 34710 36384- 45590 thickest edges to the repeat regions: saved region 417:13213 - closest 5' read 1704 ( +417) 0:7001 ( -6212) saved region 417:13213 - closest 3' read 287239 ( -568) 985:15264 ( +2051) saved region 17032:37598 - closest 5' read 333762 ( +7858) 9174:19400 (-18198) saved region 17032:37598 - closest 3' read 313809 (-11905) 28937:38340 ( +742) search for confused edges: tig 55 read 1704 pos 0-7001 NOT confused by 5' edge to read 73137 - best edge read 287239 len 6094 erate 0.0276 score 5925.81 - alt edge len 3535 erate 0.0068 score 3510.96 - absdiff 2414.84 percdiff 51.1795 tig 55 read 1704 pos 0-7001 NOT confused by 5' edge to read 73138 - best edge read 287239 len 6094 erate 0.0276 score 5925.81 - alt edge len 3556 erate 0.0076 score 3528.97 - absdiff 2396.83 percdiff 50.7009 tig 55 read 1704 pos 0-7001 NOT confused by 5' edge to read 146938 - best edge read 287239 len 6094 erate 0.0276 score 5925.81 - alt edge len 2321 erate 0.0073 score 2304.06 - absdiff 3621.75 percdiff 88.0148 tig 55 read 1704 pos 0-7001 NOT confused by 5' edge to read 310055 - best edge read 287239 len 6094 erate 0.0276 score 5925.81 - alt edge len 1922 erate 0.0062 score 1910.08 - absdiff 4015.72 percdiff 102.4956 tig 55 read 1704 pos 0-7001 IS confused by 5' edge to read 368715 - best edge read 287239 len 6094 erate 0.0276 score 5925.81 - alt edge len 5831 erate 0.0079 score 5784.94 - absdiff 140.87 percdiff 2.4058 tig 55 read 1704 pos 0-7001 NOT confused by 5' edge to read 498520 - best edge read 287239 len 6094 erate 0.0276 score 5925.81 - alt edge len 1909 erate 0.0058 score 1897.93 - absdiff 4027.88 percdiff 102.9656 tig 55 read 287239 pos 985-15264 IS confused by 3' edge to read 53295 - best edge read 1704 len 6016 erate 0.0276 score 5849.96 - alt edge len 4109 erate 0.0336 score 3970.94 - absdiff 1879.02 percdiff 38.2658 tig 55 read 287239 pos 985-15264 IS confused by 3' edge to read 329640 - best edge read 1704 len 6016 erate 0.0276 score 5849.96 - alt edge len 5897 erate 0.0151 score 5807.96 - absdiff 42.00 percdiff 0.7206 tig 55 read 287239 pos 985-15264 IS confused by 3' edge to read 399856 - best edge read 1704 len 6016 erate 0.0276 score 5849.96 - alt edge len 4454 erate 0.0312 score 4315.04 - absdiff 1534.92 percdiff 30.2002 tig 55 read 261856 pos 17362-30019 IS confused by 5' edge to read 64983 - best edge read 333762 len 2038 erate 0.0391 score 1958.31 - alt edge len 1683 erate 0.0299 score 1632.68 - absdiff 325.64 percdiff 18.1363 tig 55 read 261856 pos 17362-30019 IS confused by 5' edge to read 64984 - best edge read 333762 len 2038 erate 0.0391 score 1958.31 - alt edge len 1675 erate 0.0324 score 1620.73 - absdiff 337.58 percdiff 18.8645 tig 55 read 368715 pos 21943-31813 IS confused by 5' edge to read 1704 - best edge read 261856 len 8076 erate 0.0246 score 7877.33 - alt edge len 5843 erate 0.0079 score 5796.84 - absdiff 2080.49 percdiff 30.4295 tig 55 read 368715 pos 21943-31813 NOT confused by 5' edge to read 49362 - best edge read 261856 len 8076 erate 0.0246 score 7877.33 - alt edge len 2635 erate 0.0209 score 2579.93 - absdiff 5297.40 percdiff 101.3153 tig 55 read 368715 pos 21943-31813 NOT confused by 3' edge to read 51439 - best edge read 73138 len 7592 erate 0.0115 score 7504.69 - alt edge len 1622 erate 0.0339 score 1567.01 - absdiff 5937.68 percdiff 130.9054 tig 55 read 368715 pos 21943-31813 NOT confused by 5' edge to read 53295 - best edge read 261856 len 8076 erate 0.0246 score 7877.33 - alt edge len 3922 erate 0.0066 score 3896.11 - absdiff 3981.22 percdiff 67.6304 tig 55 read 368715 pos 21943-31813 NOT confused by 5' edge to read 329640 - best edge read 261856 len 8076 erate 0.0246 score 7877.33 - alt edge len 5724 erate 0.0270 score 5569.45 - absdiff 2307.88 percdiff 34.3261 tig 55 read 368715 pos 21943-31813 NOT confused by 3' edge to read 333761 - best edge read 73138 len 7592 erate 0.0115 score 7504.69 - alt edge len 1511 erate 0.0324 score 1462.04 - absdiff 6042.65 percdiff 134.7792 tig 55 read 368715 pos 21943-31813 NOT confused by 3' edge to read 333762 - best edge read 73138 len 7592 erate 0.0115 score 7504.69 - alt edge len 1509 erate 0.0320 score 1460.71 - absdiff 6043.98 percdiff 134.8289 tig 55 read 368715 pos 21943-31813 NOT confused by 3' edge to read 333763 - best edge read 73138 len 7592 erate 0.0115 score 7504.69 - alt edge len 1506 erate 0.0273 score 1464.89 - absdiff 6039.81 percdiff 134.6731 tig 55 read 368715 pos 21943-31813 NOT confused by 5' edge to read 399856 - best edge read 261856 len 8076 erate 0.0246 score 7877.33 - alt edge len 4264 erate 0.0070 score 4234.15 - absdiff 3643.18 percdiff 60.1607 tig 55 read 368715 pos 21943-31813 NOT confused by 3' edge to read 411348 - best edge read 73138 len 7592 erate 0.0115 score 7504.69 - alt edge len 2320 erate 0.0300 score 2250.40 - absdiff 5254.29 percdiff 107.7241 tig 55 read 73137 pos 24204-34645 NOT confused by 3' edge to read 1704 - best edge read 73138 len 8073 erate 0.0077 score 8010.84 - alt edge len 3552 erate 0.0068 score 3527.85 - absdiff 4482.99 percdiff 77.7037 tig 55 read 73137 pos 24204-34645 NOT confused by 3' edge to read 53295 - best edge read 73138 len 8073 erate 0.0077 score 8010.84 - alt edge len 1622 erate 0.0049 score 1614.05 - absdiff 6396.79 percdiff 132.9217 tig 55 read 73137 pos 24204-34645 NOT confused by 3' edge to read 329640 - best edge read 73138 len 8073 erate 0.0077 score 8010.84 - alt edge len 3433 erate 0.0085 score 3403.82 - absdiff 4607.02 percdiff 80.7211 tig 55 read 73137 pos 24204-34645 NOT confused by 3' edge to read 399856 - best edge read 73138 len 8073 erate 0.0077 score 8010.84 - alt edge len 1966 erate 0.0071 score 1952.04 - absdiff 6058.80 percdiff 121.6274 tig 55 read 73138 pos 24205-32277 NOT confused by 5' edge to read 1704 - best edge read 368715 len 7608 erate 0.0115 score 7520.51 - alt edge len 3562 erate 0.0076 score 3534.93 - absdiff 3985.58 percdiff 72.1017 tig 55 read 73138 pos 24205-32277 NOT confused by 3' edge to read 51439 - best edge read 73137 len 8050 erate 0.0077 score 7988.01 - alt edge len 2076 erate 0.0376 score 1997.94 - absdiff 5990.07 percdiff 119.9699 tig 55 read 73138 pos 24205-32277 NOT confused by 5' edge to read 53295 - best edge read 368715 len 7608 erate 0.0115 score 7520.51 - alt edge len 1639 erate 0.0067 score 1628.02 - absdiff 5892.49 percdiff 128.8183 tig 55 read 73138 pos 24205-32277 NOT confused by 5' edge to read 329640 - best edge read 368715 len 7608 erate 0.0115 score 7520.51 - alt edge len 3443 erate 0.0099 score 3408.91 - absdiff 4111.59 percdiff 75.2390 tig 55 read 73138 pos 24205-32277 NOT confused by 3' edge to read 333761 - best edge read 73137 len 8050 erate 0.0077 score 7988.01 - alt edge len 1964 erate 0.0367 score 1891.92 - absdiff 6096.09 percdiff 123.4035 tig 55 read 73138 pos 24205-32277 NOT confused by 3' edge to read 333762 - best edge read 73137 len 8050 erate 0.0077 score 7988.01 - alt edge len 1962 erate 0.0347 score 1893.92 - absdiff 6094.10 percdiff 123.3381 tig 55 read 73138 pos 24205-32277 NOT confused by 3' edge to read 333763 - best edge read 73137 len 8050 erate 0.0077 score 7988.01 - alt edge len 1959 erate 0.0316 score 1897.10 - absdiff 6090.92 percdiff 123.2342 tig 55 read 73138 pos 24205-32277 NOT confused by 5' edge to read 399856 - best edge read 368715 len 7608 erate 0.0115 score 7520.51 - alt edge len 1983 erate 0.0076 score 1967.93 - absdiff 5552.58 percdiff 117.0388 tig 55 read 146938 pos 25396-34700 NOT confused by 3' edge to read 1704 - best edge read 73137 len 9249 erate 0.0133 score 9125.99 - alt edge len 2330 erate 0.0073 score 2312.99 - absdiff 6813.00 percdiff 119.1190 tig 55 read 146938 pos 25396-34700 NOT confused by 3' edge to read 154824 - best edge read 73137 len 9249 erate 0.0133 score 9125.99 - alt edge len 3096 erate 0.0277 score 3010.24 - absdiff 6115.75 percdiff 100.7850 tig 55 read 146938 pos 25396-34700 NOT confused by 3' edge to read 302616 - best edge read 73137 len 9249 erate 0.0133 score 9125.99 - alt edge len 1578 erate 0.0267 score 1535.87 - absdiff 7590.12 percdiff 142.3790 tig 55 read 146938 pos 25396-34700 NOT confused by 3' edge to read 302619 - best edge read 73137 len 9249 erate 0.0133 score 9125.99 - alt edge len 1564 erate 0.0262 score 1523.02 - absdiff 7602.97 percdiff 142.7919 tig 55 read 146938 pos 25396-34700 NOT confused by 3' edge to read 329640 - best edge read 73137 len 9249 erate 0.0133 score 9125.99 - alt edge len 2211 erate 0.0123 score 2183.80 - absdiff 6942.18 percdiff 122.7641 tig 55 read 146938 pos 25396-34700 NOT confused by 3' edge to read 399856 - best edge read 73137 len 9249 erate 0.0133 score 9125.99 - alt edge len 750 erate 0.0094 score 742.95 - absdiff 8383.04 percdiff 169.8873 tig 55 read 310055 pos 25791-36361 NOT confused by 5' edge to read 1704 - best edge read 146938 len 8909 erate 0.0135 score 8788.73 - alt edge len 1936 erate 0.0062 score 1924.00 - absdiff 6864.73 percdiff 128.1603 tig 55 read 310055 pos 25791-36361 NOT confused by 5' edge to read 154824 - best edge read 146938 len 8909 erate 0.0135 score 8788.73 - alt edge len 2710 erate 0.0300 score 2628.70 - absdiff 6160.03 percdiff 107.9057 tig 55 read 310055 pos 25791-36361 NOT confused by 5' edge to read 302616 - best edge read 146938 len 8909 erate 0.0135 score 8788.73 - alt edge len 1184 erate 0.0292 score 1149.43 - absdiff 7639.30 percdiff 153.7368 tig 55 read 310055 pos 25791-36361 NOT confused by 5' edge to read 302619 - best edge read 146938 len 8909 erate 0.0135 score 8788.73 - alt edge len 1170 erate 0.0303 score 1134.55 - absdiff 7654.18 percdiff 154.2672 tig 55 read 310055 pos 25791-36361 NOT confused by 5' edge to read 329640 - best edge read 146938 len 8909 erate 0.0135 score 8788.73 - alt edge len 1817 erate 0.0111 score 1796.83 - absdiff 6991.90 percdiff 132.1025 tig 55 read 498520 pos 25817-36921 NOT confused by 3' edge to read 1704 - best edge read 310055 len 10544 erate 0.0137 score 10399.55 - alt edge len 1916 erate 0.0058 score 1904.89 - absdiff 8494.66 percdiff 138.0748 tig 55 read 498520 pos 25817-36921 NOT confused by 3' edge to read 154824 - best edge read 310055 len 10544 erate 0.0137 score 10399.55 - alt edge len 2686 erate 0.0275 score 2612.14 - absdiff 7787.41 percdiff 119.6988 tig 55 read 498520 pos 25817-36921 NOT confused by 3' edge to read 302616 - best edge read 310055 len 10544 erate 0.0137 score 10399.55 - alt edge len 1165 erate 0.0269 score 1133.66 - absdiff 9265.89 percdiff 160.6818 tig 55 read 498520 pos 25817-36921 NOT confused by 3' edge to read 302619 - best edge read 310055 len 10544 erate 0.0137 score 10399.55 - alt edge len 1151 erate 0.0280 score 1118.77 - absdiff 9280.78 percdiff 161.1481 tig 55 read 498520 pos 25817-36921 NOT confused by 3' edge to read 329640 - best edge read 310055 len 10544 erate 0.0137 score 10399.55 - alt edge len 1798 erate 0.0101 score 1779.84 - absdiff 8619.71 percdiff 141.5458 saved region 417:13213 - 4 best edges are potentially confused saved region 17032:37598 - 3 best edges are potentially confused break tig 55 into up to 4 pieces: 0 13713 repeat (length 13713) 13713 16532 unique (length 2819) 16532 38098 repeat (length 21566) 38098 45745 unique (length 7647) Creating Unitig 90602 Creating Unitig 90603 Creating Unitig 90604 Creating Unitig 90605 For tig 55 repeat region 0 13713 - 13/ 0 reads repeat/unique - unitig 90602 created. For tig 55 unique region 13713 16532 - 0/ 10 reads repeat/unique - unitig 90603 created. For tig 55 repeat region 16532 38098 - 150/ 0 reads repeat/unique - unitig 90604 created. For tig 55 unique region 38098 45745 - 0/ 30 reads repeat/unique - unitig 90605 created. Annotating repeats in reads for tig 56/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5878:2579 - contained in read 61868 0- 5879 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 58/90584. Annotated with 969 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4882:25433 - closest 5' read 74514 ( +54) 4828:11244 (-14189) saved region 4882:25433 - closest 3' read 103980 ( -9307) 14189:25454 ( +21) saved region 32413:39627 - closest read 391921 ( +211) 32202:39660 ( +33) (contained) saved region 32413:39627 - closest 5' read 391921 ( +211) 32202:39660 ( +33) saved region 32413:39627 - closest 3' read 391921 ( +211) 32202:39660 ( +33) search for confused edges: tig 58 read 388370 pos 5280-18443 NOT confused by 3' edge to read 31898 - best edge read 234755 len 12340 erate 0.0448 score 11787.17 - alt edge len 6627 erate 0.0330 score 6408.31 - absdiff 5378.86 percdiff 59.1230 tig 58 read 388370 pos 5280-18443 NOT confused by 3' edge to read 88235 - best edge read 234755 len 12340 erate 0.0448 score 11787.17 - alt edge len 6690 erate 0.0363 score 6447.15 - absdiff 5340.02 percdiff 58.5710 tig 58 read 388370 pos 5280-18443 NOT confused by 3' edge to read 148153 - best edge read 234755 len 12340 erate 0.0448 score 11787.17 - alt edge len 6704 erate 0.0317 score 6491.48 - absdiff 5295.68 percdiff 57.9439 tig 58 read 388370 pos 5280-18443 NOT confused by 3' edge to read 335039 - best edge read 234755 len 12340 erate 0.0448 score 11787.17 - alt edge len 6691 erate 0.0280 score 6503.65 - absdiff 5283.52 percdiff 57.7723 tig 58 read 388370 pos 5280-18443 NOT confused by 3' edge to read 453183 - best edge read 234755 len 12340 erate 0.0448 score 11787.17 - alt edge len 5142 erate 0.0322 score 4976.43 - absdiff 6810.74 percdiff 81.2563 tig 58 read 388370 pos 5280-18443 NOT confused by 3' edge to read 458597 - best edge read 234755 len 12340 erate 0.0448 score 11787.17 - alt edge len 2752 erate 0.0234 score 2687.60 - absdiff 9099.56 percdiff 125.7300 tig 58 read 388370 pos 5280-18443 NOT confused by 3' edge to read 476130 - best edge read 234755 len 12340 erate 0.0448 score 11787.17 - alt edge len 1951 erate 0.0287 score 1895.01 - absdiff 9892.16 percdiff 144.5993 tig 58 read 388370 pos 5280-18443 NOT confused by 3' edge to read 476131 - best edge read 234755 len 12340 erate 0.0448 score 11787.17 - alt edge len 2900 erate 0.0228 score 2833.88 - absdiff 8953.29 percdiff 122.4712 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 31898 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 9666 erate 0.0322 score 9354.75 - absdiff 3785.06 percdiff 33.6531 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 86142 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 1041 erate 0.0347 score 1004.88 - absdiff 12134.94 percdiff 171.5829 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 88235 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 9728 erate 0.0347 score 9390.44 - absdiff 3749.37 percdiff 33.2830 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 148153 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 9742 erate 0.0376 score 9375.70 - absdiff 3764.11 percdiff 33.4357 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 320529 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 947 erate 0.0265 score 921.90 - absdiff 12217.91 percdiff 173.7755 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 335039 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 9729 erate 0.0342 score 9396.27 - absdiff 3743.54 percdiff 33.2227 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 453183 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 8169 erate 0.0368 score 7868.38 - absdiff 5271.43 percdiff 50.1845 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 458597 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 5776 erate 0.0294 score 5606.19 - absdiff 7533.63 percdiff 80.3758 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 476130 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 5000 erate 0.0307 score 4846.50 - absdiff 8293.31 percdiff 92.2180 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 476131 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 5924 erate 0.0255 score 5772.94 - absdiff 7366.87 percdiff 77.9038 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 520232 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 802 erate 0.0399 score 770.00 - absdiff 12369.81 percdiff 177.8574 tig 58 read 234755 pos 6062-21492 NOT confused by 5' edge to read 520235 - best edge read 343169 len 13639 erate 0.0366 score 13139.81 - alt edge len 813 erate 0.0418 score 779.02 - absdiff 12360.80 percdiff 177.6126 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 86142 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 4723 erate 0.0283 score 4589.34 - absdiff 8367.44 percdiff 95.3765 tig 58 read 343169 pos 7957-25175 IS confused by 5' edge to read 88235 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 13327 erate 0.0269 score 12968.50 - absdiff 11.72 percdiff 0.0904 tig 58 read 343169 pos 7957-25175 NOT confused by 3' edge to read 144818 - best edge read 234755 len 13535 erate 0.0366 score 13039.62 - alt edge len 1012 erate 0.0395 score 972.03 - absdiff 12067.59 percdiff 172.2509 tig 58 read 343169 pos 7957-25175 NOT confused by 3' edge to read 144821 - best edge read 234755 len 13535 erate 0.0366 score 13039.62 - alt edge len 937 erate 0.0448 score 895.02 - absdiff 12144.60 percdiff 174.3080 tig 58 read 343169 pos 7957-25175 NOT confused by 3' edge to read 144824 - best edge read 234755 len 13535 erate 0.0366 score 13039.62 - alt edge len 983 erate 0.0397 score 943.97 - absdiff 12095.64 percdiff 172.9976 tig 58 read 343169 pos 7957-25175 IS confused by 5' edge to read 148153 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 13341 erate 0.0313 score 12923.43 - absdiff 33.35 percdiff 0.2577 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 175365 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 2729 erate 0.0416 score 2615.47 - absdiff 10341.31 percdiff 132.8171 tig 58 read 343169 pos 7957-25175 NOT confused by 3' edge to read 205524 - best edge read 234755 len 13535 erate 0.0366 score 13039.62 - alt edge len 1121 erate 0.0277 score 1089.95 - absdiff 11949.67 percdiff 169.1442 tig 58 read 343169 pos 7957-25175 IS confused by 5' edge to read 335039 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 13328 erate 0.0290 score 12941.49 - absdiff 15.29 percdiff 0.1181 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 343897 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 4026 erate 0.0336 score 3890.73 - absdiff 9066.05 percdiff 107.6249 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 352629 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 3905 erate 0.0363 score 3763.25 - absdiff 9193.53 percdiff 109.9703 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 371188 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 2226 erate 0.0297 score 2159.89 - absdiff 10796.89 percdiff 142.8475 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 371190 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 2225 erate 0.0256 score 2168.04 - absdiff 10788.74 percdiff 142.6627 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 371191 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 2213 erate 0.0321 score 2141.96 - absdiff 10814.82 percdiff 143.2545 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 445913 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 3662 erate 0.0432 score 3503.80 - absdiff 9452.98 percdiff 114.8559 tig 58 read 343169 pos 7957-25175 IS confused by 5' edge to read 453183 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 11774 erate 0.0272 score 11453.75 - absdiff 1503.03 percdiff 12.3146 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 458597 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 9407 erate 0.0216 score 9203.81 - absdiff 3752.97 percdiff 33.8707 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 476130 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 8632 erate 0.0418 score 8271.18 - absdiff 4685.60 percdiff 44.1455 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 476131 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 9555 erate 0.0338 score 9232.04 - absdiff 3724.74 percdiff 33.5731 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 481992 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 5267 erate 0.0446 score 5032.09 - absdiff 7924.69 percdiff 88.1066 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 503370 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 2841 erate 0.0398 score 2727.93 - absdiff 10228.85 percdiff 130.4309 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 509751 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 4114 erate 0.0263 score 4005.80 - absdiff 8950.98 percdiff 105.5379 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 520232 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 4483 erate 0.0265 score 4364.20 - absdiff 8592.58 percdiff 99.2159 tig 58 read 343169 pos 7957-25175 NOT confused by 5' edge to read 520235 - best edge read 456649 len 13341 erate 0.0288 score 12956.78 - alt edge len 4496 erate 0.0305 score 4358.87 - absdiff 8597.91 percdiff 99.3079 tig 58 read 456649 pos 11794-25189 NOT confused by 3' edge to read 213210 - best edge read 343169 len 13381 erate 0.0288 score 12995.63 - alt edge len 5595 erate 0.0386 score 5379.03 - absdiff 7616.59 percdiff 82.9032 tig 58 read 456649 pos 11794-25189 NOT confused by 3' edge to read 213211 - best edge read 343169 len 13381 erate 0.0288 score 12995.63 - alt edge len 5593 erate 0.0401 score 5368.72 - absdiff 7626.91 percdiff 83.0621 tig 58 read 456649 pos 11794-25189 NOT confused by 3' edge to read 226922 - best edge read 343169 len 13381 erate 0.0288 score 12995.63 - alt edge len 1499 erate 0.0419 score 1436.19 - absdiff 11559.44 percdiff 160.1937 tig 58 read 456649 pos 11794-25189 NOT confused by 3' edge to read 226923 - best edge read 343169 len 13381 erate 0.0288 score 12995.63 - alt edge len 1491 erate 0.0381 score 1434.19 - absdiff 11561.43 percdiff 160.2436 tig 58 read 456649 pos 11794-25189 NOT confused by 3' edge to read 226924 - best edge read 343169 len 13381 erate 0.0288 score 12995.63 - alt edge len 1477 erate 0.0350 score 1425.31 - absdiff 11570.32 percdiff 160.4657 tig 58 read 456649 pos 11794-25189 NOT confused by 3' edge to read 292307 - best edge read 343169 len 13381 erate 0.0288 score 12995.63 - alt edge len 2245 erate 0.0343 score 2168.00 - absdiff 10827.63 percdiff 142.8106 tig 58 read 275014 pos 20930-27933 IS confused by 3' edge to read 250359 - best edge read 456649 len 4259 erate 0.0402 score 4087.79 - alt edge len 2987 erate 0.0425 score 2860.05 - absdiff 1227.74 percdiff 35.3415 tig 58 read 21526 pos 33058-40803 NOT confused by 5' edge to read 388052 - best edge read 474285 len 6527 erate 0.0054 score 6491.75 - alt edge len 2644 erate 0.0332 score 2556.22 - absdiff 3935.54 percdiff 86.9926 tig 58 read 21526 pos 33058-40803 NOT confused by 5' edge to read 388053 - best edge read 474285 len 6527 erate 0.0054 score 6491.75 - alt edge len 2595 erate 0.0340 score 2506.77 - absdiff 3984.98 percdiff 88.5697 tig 58 read 21526 pos 33058-40803 NOT confused by 5' edge to read 501464 - best edge read 474285 len 6527 erate 0.0054 score 6491.75 - alt edge len 2627 erate 0.0338 score 2538.21 - absdiff 3953.55 percdiff 87.5651 saved region 4882:25433 - 5 best edges are potentially confused discard region 32413:39627 - no confusion in best edges break tig 58 into up to 3 pieces: 0 4382 unique (length 4382) 4382 25933 repeat (length 21551) 25933 42461 unique (length 16528) Creating Unitig 90606 Creating Unitig 90607 Creating Unitig 90608 For tig 58 unique region 0 4382 - 0/ 4 reads repeat/unique - unitig 90606 created. For tig 58 repeat region 4382 25933 - 501/ 0 reads repeat/unique - unitig 90607 created. For tig 58 unique region 25933 42461 - 0/ 40 reads repeat/unique - unitig 90608 created. Annotating repeats in reads for tig 59/90584. Annotated with 153 overlaps. Scan reads to discard spanned repeats. discard region 0:8046 - contained in read 288590 0- 9546 discard region 24563:32436 - contained in read 148156 23688- 32436 thickest edges to the repeat regions: saved region 13196:23312 - closest 5' read 481747 ( +1387) 11809:23194 ( -118) saved region 13196:23312 - closest 3' read 455774 ( -2210) 15406:24368 ( +1056) search for confused edges: discard region 13196:23312 - no confusion in best edges Annotating repeats in reads for tig 60/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3:5289 - contained in read 153483 0- 6307 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 63/90584. Annotated with 734 overlaps. Scan reads to discard spanned repeats. discard region 0:7785 - contained in read 426471 0- 13994 discard region 34128:35306 - contained in read 294672 29398- 36710 thickest edges to the repeat regions: saved region 7815:29504 - closest 5' read 426470 ( +7732) 83:16151 (-13353) saved region 7815:29504 - closest 3' read 33659 (-14765) 22580:29505 ( +1) saved region 35516:72671 - closest 5' read 148654 ( +82) 35434:45901 (-26770) saved region 35516:72671 - closest 3' read 168710 (-30840) 66356:72804 ( +133) search for confused edges: tig 63 read 426470 pos 83-16151 NOT confused by 5' edge to read 22199 - best edge read 176508 len 7187 erate 0.0386 score 6909.58 - alt edge len 2525 erate 0.0262 score 2458.84 - absdiff 4450.74 percdiff 95.0157 tig 63 read 176508 pos 9020-16202 IS confused by 3' edge to read 1273 - best edge read 467748 len 6387 erate 0.0309 score 6189.64 - alt edge len 4470 erate 0.0374 score 4302.82 - absdiff 1886.82 percdiff 35.9652 tig 63 read 176508 pos 9020-16202 NOT confused by 3' edge to read 22199 - best edge read 467748 len 6387 erate 0.0309 score 6189.64 - alt edge len 2572 erate 0.0311 score 2492.01 - absdiff 3697.63 percdiff 85.1827 tig 63 read 176508 pos 9020-16202 NOT confused by 3' edge to read 418651 - best edge read 467748 len 6387 erate 0.0309 score 6189.64 - alt edge len 4155 erate 0.0316 score 4023.70 - absdiff 2165.94 percdiff 42.4139 tig 63 read 177709 pos 16744-24564 NOT confused by 5' edge to read 418651 - best edge read 467748 len 7615 erate 0.0245 score 7428.43 - alt edge len 3046 erate 0.0383 score 2929.34 - absdiff 4499.09 percdiff 86.8738 tig 63 read 177709 pos 16744-24564 NOT confused by 5' edge to read 472007 - best edge read 467748 len 7615 erate 0.0245 score 7428.43 - alt edge len 2796 erate 0.0353 score 2697.30 - absdiff 4731.13 percdiff 93.4477 tig 63 read 177709 pos 16744-24564 NOT confused by 5' edge to read 472009 - best edge read 467748 len 7615 erate 0.0245 score 7428.43 - alt edge len 2793 erate 0.0353 score 2694.41 - absdiff 4734.03 percdiff 93.5316 tig 63 read 165753 pos 22540-29445 NOT confused by 3' edge to read 1273 - best edge read 33659 len 6864 erate 0.0210 score 6719.86 - alt edge len 4421 erate 0.0320 score 4279.53 - absdiff 2440.33 percdiff 44.3721 tig 63 read 165753 pos 22540-29445 NOT confused by 3' edge to read 418651 - best edge read 33659 len 6864 erate 0.0210 score 6719.86 - alt edge len 4103 erate 0.0326 score 3969.24 - absdiff 2750.61 percdiff 51.4658 tig 63 read 216641 pos 37847-52672 NOT confused by 5' edge to read 287888 - best edge read 369558 len 9505 erate 0.0101 score 9409.00 - alt edge len 3521 erate 0.0097 score 3486.85 - absdiff 5922.15 percdiff 91.8459 tig 63 read 369558 pos 43168-53949 NOT confused by 3' edge to read 287888 - best edge read 159857 len 9627 erate 0.0123 score 9508.59 - alt edge len 4789 erate 0.0144 score 4720.04 - absdiff 4788.55 percdiff 67.3087 tig 63 read 369558 pos 43168-53949 NOT confused by 5' edge to read 326512 - best edge read 216641 len 9504 erate 0.0101 score 9408.01 - alt edge len 1403 erate 0.0287 score 1362.73 - absdiff 8045.28 percdiff 149.3913 tig 63 read 159857 pos 44318-54090 NOT confused by 5' edge to read 287888 - best edge read 406747 len 8684 erate 0.0193 score 8516.40 - alt edge len 4931 erate 0.0134 score 4864.92 - absdiff 3651.47 percdiff 54.5757 tig 63 read 159857 pos 44318-54090 NOT confused by 3' edge to read 326512 - best edge read 369558 len 9631 erate 0.0123 score 9512.54 - alt edge len 1256 erate 0.0242 score 1225.60 - absdiff 8286.93 percdiff 154.3457 tig 63 read 406747 pos 45441-67199 NOT confused by 5' edge to read 148653 - best edge read 159857 len 8649 erate 0.0193 score 8482.07 - alt edge len 3165 erate 0.0225 score 3093.79 - absdiff 5388.29 percdiff 93.0952 tig 63 read 406747 pos 45441-67199 NOT confused by 5' edge to read 326512 - best edge read 159857 len 8649 erate 0.0193 score 8482.07 - alt edge len 1156 erate 0.0390 score 1110.92 - absdiff 7371.16 percdiff 153.6780 tig 63 read 168710 pos 66356-72804 NOT confused by 3' edge to read 192642 - best edge read 470492 len 5408 erate 0.0201 score 5299.30 - alt edge len 1304 erate 0.0372 score 1255.49 - absdiff 4043.81 percdiff 123.3848 tig 63 read 168710 pos 66356-72804 NOT confused by 3' edge to read 378631 - best edge read 470492 len 5408 erate 0.0201 score 5299.30 - alt edge len 1310 erate 0.0334 score 1266.25 - absdiff 4033.05 percdiff 122.8551 saved region 7815:29504 - 1 best edges are potentially confused discard region 35516:72671 - no confusion in best edges break tig 63 into up to 3 pieces: 0 7315 unique (length 7315) 7315 30004 repeat (length 22689) 30004 75294 unique (length 45290) Creating Unitig 90609 Creating Unitig 90610 Creating Unitig 90611 For tig 63 unique region 0 7315 - 0/ 12 reads repeat/unique - unitig 90609 created. For tig 63 repeat region 7315 30004 - 44/ 0 reads repeat/unique - unitig 90610 created. For tig 63 unique region 30004 75294 - 0/ 176 reads repeat/unique - unitig 90611 created. Annotating repeats in reads for tig 65/90584. Annotated with 77 overlaps. Scan reads to discard spanned repeats. discard region 0:2257 - contained in read 470523 0- 7444 discard region 4166:9570 - contained in read 502576 981- 10854 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 67/90584. Annotated with 1539 overlaps. Scan reads to discard spanned repeats. discard region 37653:38697 - contained in read 369937 32488- 43072 discard region 38886:39513 - contained in read 369937 32488- 43072 discard region 42413:43230 - contained in read 350248 36456- 45547 discard region 45598:48203 - contained in read 278167 41419- 48203 thickest edges to the repeat regions: saved region 21836:37514 - closest 5' read 447718 ( +164) 21672:27223 (-10291) saved region 21836:37514 - closest 3' read 369937 (-10652) 32488:43072 ( +5558) search for confused edges: tig 67 read 418002 pos 19837-24972 IS confused by 3' edge to read 369939 - best edge read 328801 len 2879 erate 0.0366 score 2773.63 - alt edge len 977 erate 0.0365 score 941.34 - absdiff 1832.29 percdiff 98.6436 tig 67 read 328801 pos 22093-29753 NOT confused by 5' edge to read 30073 - best edge read 366011 len 7658 erate 0.0308 score 7422.13 - alt edge len 1243 erate 0.0363 score 1197.88 - absdiff 6224.25 percdiff 144.4140 tig 67 read 328801 pos 22093-29753 NOT confused by 5' edge to read 30075 - best edge read 366011 len 7658 erate 0.0308 score 7422.13 - alt edge len 2209 erate 0.0389 score 2123.07 - absdiff 5299.06 percdiff 111.0309 tig 67 read 328801 pos 22093-29753 NOT confused by 5' edge to read 369939 - best edge read 366011 len 7658 erate 0.0308 score 7422.13 - alt edge len 3495 erate 0.0243 score 3410.07 - absdiff 4012.06 percdiff 74.0766 tig 67 read 328801 pos 22093-29753 NOT confused by 5' edge to read 376022 - best edge read 366011 len 7658 erate 0.0308 score 7422.13 - alt edge len 1404 erate 0.0314 score 1359.91 - absdiff 6062.22 percdiff 138.0594 tig 67 read 366011 pos 22095-30593 NOT confused by 3' edge to read 30073 - best edge read 356017 len 8497 erate 0.0275 score 8263.33 - alt edge len 1762 erate 0.0296 score 1709.84 - absdiff 6553.49 percdiff 131.4223 tig 67 read 366011 pos 22095-30593 NOT confused by 3' edge to read 30075 - best edge read 356017 len 8497 erate 0.0275 score 8263.33 - alt edge len 2737 erate 0.0297 score 2655.71 - absdiff 5607.62 percdiff 102.7127 tig 67 read 366011 pos 22095-30593 NOT confused by 5' edge to read 75851 - best edge read 328801 len 7660 erate 0.0308 score 7424.07 - alt edge len 2739 erate 0.0285 score 2660.94 - absdiff 4763.13 percdiff 94.4597 tig 67 read 366011 pos 22095-30593 NOT confused by 5' edge to read 75853 - best edge read 328801 len 7660 erate 0.0308 score 7424.07 - alt edge len 2741 erate 0.0255 score 2671.10 - absdiff 4752.97 percdiff 94.1631 tig 67 read 366011 pos 22095-30593 NOT confused by 5' edge to read 144081 - best edge read 328801 len 7660 erate 0.0308 score 7424.07 - alt edge len 1497 erate 0.0301 score 1451.94 - absdiff 5972.13 percdiff 134.5679 tig 67 read 366011 pos 22095-30593 NOT confused by 5' edge to read 144084 - best edge read 328801 len 7660 erate 0.0308 score 7424.07 - alt edge len 1501 erate 0.0346 score 1449.07 - absdiff 5975.01 percdiff 134.6763 tig 67 read 366011 pos 22095-30593 NOT confused by 3' edge to read 369939 - best edge read 356017 len 8497 erate 0.0275 score 8263.33 - alt edge len 4351 erate 0.0172 score 4276.16 - absdiff 3987.17 percdiff 63.5938 tig 67 read 366011 pos 22095-30593 IS confused by 5' edge to read 375521 - best edge read 328801 len 7660 erate 0.0308 score 7424.07 - alt edge len 6258 erate 0.0314 score 6061.50 - absdiff 1362.57 percdiff 20.2079 tig 67 read 366011 pos 22095-30593 IS confused by 5' edge to read 375522 - best edge read 328801 len 7660 erate 0.0308 score 7424.07 - alt edge len 6263 erate 0.0270 score 6093.90 - absdiff 1330.17 percdiff 19.6801 tig 67 read 366011 pos 22095-30593 NOT confused by 3' edge to read 376021 - best edge read 356017 len 8497 erate 0.0275 score 8263.33 - alt edge len 1716 erate 0.0309 score 1662.98 - absdiff 6600.36 percdiff 132.9871 tig 67 read 366011 pos 22095-30593 NOT confused by 3' edge to read 376022 - best edge read 356017 len 8497 erate 0.0275 score 8263.33 - alt edge len 1602 erate 0.0294 score 1554.90 - absdiff 6708.43 percdiff 136.6525 tig 67 read 366011 pos 22095-30593 NOT confused by 5' edge to read 457914 - best edge read 328801 len 7660 erate 0.0308 score 7424.07 - alt edge len 3546 erate 0.0373 score 3413.73 - absdiff 4010.34 percdiff 74.0064 tig 67 read 366011 pos 22095-30593 NOT confused by 5' edge to read 457915 - best edge read 328801 len 7660 erate 0.0308 score 7424.07 - alt edge len 3537 erate 0.0397 score 3396.58 - absdiff 4027.49 percdiff 74.4408 tig 67 read 356017 pos 22096-35137 NOT confused by 3' edge to read 30073 - best edge read 321579 len 10246 erate 0.0269 score 9970.38 - alt edge len 2074 erate 0.0319 score 2007.84 - absdiff 7962.54 percdiff 132.9503 tig 67 read 356017 pos 22096-35137 NOT confused by 3' edge to read 30075 - best edge read 321579 len 10246 erate 0.0269 score 9970.38 - alt edge len 2078 erate 0.0332 score 2009.01 - absdiff 7961.37 percdiff 132.9178 tig 67 read 356017 pos 22096-35137 NOT confused by 5' edge to read 75851 - best edge read 366011 len 8538 erate 0.0275 score 8303.20 - alt edge len 2738 erate 0.0289 score 2658.87 - absdiff 5644.33 percdiff 102.9793 tig 67 read 356017 pos 22096-35137 NOT confused by 5' edge to read 75853 - best edge read 366011 len 8538 erate 0.0275 score 8303.20 - alt edge len 2740 erate 0.0263 score 2667.94 - absdiff 5635.27 percdiff 102.7289 tig 67 read 356017 pos 22096-35137 NOT confused by 5' edge to read 104256 - best edge read 366011 len 8538 erate 0.0275 score 8303.20 - alt edge len 3988 erate 0.0331 score 3856.00 - absdiff 4447.21 percdiff 73.1497 tig 67 read 356017 pos 22096-35137 NOT confused by 5' edge to read 144081 - best edge read 366011 len 8538 erate 0.0275 score 8303.20 - alt edge len 1505 erate 0.0286 score 1461.96 - absdiff 6841.25 percdiff 140.1154 tig 67 read 356017 pos 22096-35137 NOT confused by 5' edge to read 144084 - best edge read 366011 len 8538 erate 0.0275 score 8303.20 - alt edge len 1509 erate 0.0326 score 1459.81 - absdiff 6843.40 percdiff 140.1903 tig 67 read 356017 pos 22096-35137 NOT confused by 5' edge to read 375521 - best edge read 366011 len 8538 erate 0.0275 score 8303.20 - alt edge len 6295 erate 0.0195 score 6172.25 - absdiff 2130.96 percdiff 29.4424 tig 67 read 356017 pos 22096-35137 IS confused by 5' edge to read 375522 - best edge read 366011 len 8538 erate 0.0275 score 8303.20 - alt edge len 6300 erate 0.0148 score 6206.76 - absdiff 2096.44 percdiff 28.8966 tig 67 read 356017 pos 22096-35137 NOT confused by 3' edge to read 376021 - best edge read 321579 len 10246 erate 0.0269 score 9970.38 - alt edge len 1381 erate 0.0406 score 1324.93 - absdiff 8645.45 percdiff 153.0803 tig 67 read 356017 pos 22096-35137 NOT confused by 3' edge to read 376022 - best edge read 321579 len 10246 erate 0.0269 score 9970.38 - alt edge len 1591 erate 0.0340 score 1536.91 - absdiff 8433.48 percdiff 146.5763 tig 67 read 356017 pos 22096-35137 NOT confused by 5' edge to read 420437 - best edge read 366011 len 8538 erate 0.0275 score 8303.20 - alt edge len 3331 erate 0.0314 score 3226.41 - absdiff 5076.80 percdiff 88.0654 tig 67 read 356017 pos 22096-35137 NOT confused by 5' edge to read 457914 - best edge read 366011 len 8538 erate 0.0275 score 8303.20 - alt edge len 3582 erate 0.0168 score 3521.82 - absdiff 4781.38 percdiff 80.8689 tig 67 read 356017 pos 22096-35137 NOT confused by 5' edge to read 457915 - best edge read 366011 len 8538 erate 0.0275 score 8303.20 - alt edge len 3573 erate 0.0185 score 3506.90 - absdiff 4796.31 percdiff 81.2238 tig 67 read 321579 pos 24891-37440 NOT confused by 5' edge to read 75853 - best edge read 356017 len 10173 erate 0.0269 score 9899.35 - alt edge len 2181 erate 0.0395 score 2094.85 - absdiff 7804.50 percdiff 130.1379 tig 67 read 321579 pos 24891-37440 NOT confused by 5' edge to read 375521 - best edge read 356017 len 10173 erate 0.0269 score 9899.35 - alt edge len 4418 erate 0.0270 score 4298.71 - absdiff 5600.63 percdiff 78.8929 tig 67 read 321579 pos 24891-37440 NOT confused by 5' edge to read 375522 - best edge read 356017 len 10173 erate 0.0269 score 9899.35 - alt edge len 4423 erate 0.0233 score 4319.94 - absdiff 5579.40 percdiff 78.4765 tig 67 read 369939 pos 32666-43330 NOT confused by 3' edge to read 75851 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 1143 erate 0.0316 score 1106.88 - absdiff 3491.04 percdiff 122.3895 tig 67 read 369939 pos 32666-43330 NOT confused by 3' edge to read 75853 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 2115 erate 0.0274 score 2057.05 - absdiff 2540.87 percdiff 76.3602 tig 67 read 369939 pos 32666-43330 NOT confused by 3' edge to read 104254 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 662 erate 0.0351 score 638.76 - absdiff 3959.16 percdiff 151.2086 tig 67 read 369939 pos 32666-43330 NOT confused by 3' edge to read 104256 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 778 erate 0.0308 score 754.04 - absdiff 3843.89 percdiff 143.6440 tig 67 read 369939 pos 32666-43330 IS confused by 3' edge to read 328801 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 3514 erate 0.0243 score 3428.61 - absdiff 1169.31 percdiff 29.1362 tig 67 read 369939 pos 32666-43330 IS confused by 3' edge to read 366011 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 4353 erate 0.0172 score 4278.13 - absdiff 319.80 percdiff 7.2058 tig 67 read 369939 pos 32666-43330 IS confused by 3' edge to read 375521 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 4371 erate 0.0156 score 4302.81 - absdiff 295.11 percdiff 6.6312 tig 67 read 369939 pos 32666-43330 NOT confused by 3' edge to read 375522 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 2117 erate 0.0123 score 2090.96 - absdiff 2506.96 percdiff 74.9591 tig 67 read 369939 pos 32666-43330 NOT confused by 3' edge to read 418002 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 960 erate 0.0365 score 924.96 - absdiff 3672.96 percdiff 133.0089 tig 67 read 369939 pos 32666-43330 IS confused by 3' edge to read 420437 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 3030 erate 0.0328 score 2930.62 - absdiff 1667.31 percdiff 44.2930 tig 67 read 369939 pos 32666-43330 NOT confused by 3' edge to read 428355 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 2517 erate 0.0280 score 2446.52 - absdiff 2151.40 percdiff 61.0807 tig 67 read 369939 pos 32666-43330 NOT confused by 3' edge to read 457914 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 2308 erate 0.0126 score 2278.92 - absdiff 2319.00 percdiff 67.4439 tig 67 read 369939 pos 32666-43330 NOT confused by 3' edge to read 457915 - best edge read 321579 len 4798 erate 0.0417 score 4597.92 - alt edge len 2299 erate 0.0148 score 2264.97 - absdiff 2332.95 percdiff 67.9873 saved region 21836:37514 - 8 best edges are potentially confused break tig 67 into up to 3 pieces: 0 21336 unique (length 21336) 21336 38014 repeat (length 16678) 38014 48203 unique (length 10189) Creating Unitig 90612 Creating Unitig 90613 Creating Unitig 90614 For tig 67 unique region 0 21336 - 0/ 49 reads repeat/unique - unitig 90612 created. For tig 67 repeat region 21336 38014 - 241/ 0 reads repeat/unique - unitig 90613 created. For tig 67 unique region 38014 48203 - 0/ 69 reads repeat/unique - unitig 90614 created. Annotating repeats in reads for tig 68/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2:2159 - contained in read 129614 0- 3818 discard region 5122:8545 - contained in read 212645 1970- 8545 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 70/90584. Annotated with 503 overlaps. Scan reads to discard spanned repeats. discard region 38287:42465 - contained in read 370811 35067- 42465 thickest edges to the repeat regions: saved region 4636:7742 - closest read 114303 ( +14) 4622:7986 ( +244) (contained) saved region 4636:7742 - closest read 279453 ( +9) 4627:8881 ( +1139) (contained) saved region 4636:7742 - closest 5' read 279453 ( +9) 4627:8881 ( +1139) saved region 4636:7742 - closest 3' read 114303 ( +14) 4622:7986 ( +244) saved region 16213:37765 - closest 5' read 102465 ( +3566) 12647:19873 (-17892) saved region 16213:37765 - closest 3' read 239784 (-14312) 30525:39849 ( +2084) search for confused edges: tig 70 read 279454 pos 4642-11088 IS confused by 5' edge to read 353439 - best edge read 227 len 2797 erate 0.0332 score 2704.14 - alt edge len 1695 erate 0.0317 score 1641.27 - absdiff 1062.87 percdiff 48.9193 tig 70 read 279454 pos 4642-11088 IS confused by 5' edge to read 353441 - best edge read 227 len 2797 erate 0.0332 score 2704.14 - alt edge len 1678 erate 0.0363 score 1617.09 - absdiff 1087.05 percdiff 50.3121 tig 70 read 209695 pos 17156-26498 NOT confused by 3' edge to read 71416 - best edge read 250293 len 7611 erate 0.0219 score 7444.32 - alt edge len 3224 erate 0.0370 score 3104.71 - absdiff 4339.61 percdiff 82.2750 tig 70 read 209695 pos 17156-26498 NOT confused by 3' edge to read 162477 - best edge read 250293 len 7611 erate 0.0219 score 7444.32 - alt edge len 2714 erate 0.0280 score 2638.01 - absdiff 4806.31 percdiff 95.3413 tig 70 read 209695 pos 17156-26498 NOT confused by 3' edge to read 239784 - best edge read 250293 len 7611 erate 0.0219 score 7444.32 - alt edge len 2585 erate 0.0306 score 2505.90 - absdiff 4938.42 percdiff 99.2625 tig 70 read 209695 pos 17156-26498 NOT confused by 3' edge to read 287296 - best edge read 250293 len 7611 erate 0.0219 score 7444.32 - alt edge len 2327 erate 0.0379 score 2238.81 - absdiff 5205.51 percdiff 107.5172 tig 70 read 209695 pos 17156-26498 NOT confused by 3' edge to read 309105 - best edge read 250293 len 7611 erate 0.0219 score 7444.32 - alt edge len 535 erate 0.0318 score 517.99 - absdiff 6926.33 percdiff 173.9780 tig 70 read 209695 pos 17156-26498 NOT confused by 3' edge to read 442375 - best edge read 250293 len 7611 erate 0.0219 score 7444.32 - alt edge len 3220 erate 0.0398 score 3091.84 - absdiff 4352.48 percdiff 82.6197 tig 70 read 209695 pos 17156-26498 NOT confused by 3' edge to read 529731 - best edge read 250293 len 7611 erate 0.0219 score 7444.32 - alt edge len 502 erate 0.0321 score 485.89 - absdiff 6958.43 percdiff 175.4919 tig 70 read 250293 pos 18887-28452 NOT confused by 3' edge to read 71416 - best edge read 513318 len 8349 erate 0.0290 score 8106.88 - alt edge len 1992 erate 0.0356 score 1921.08 - absdiff 6185.79 percdiff 123.3709 tig 70 read 250293 pos 18887-28452 NOT confused by 3' edge to read 162477 - best edge read 513318 len 8349 erate 0.0290 score 8106.88 - alt edge len 2562 erate 0.0340 score 2474.89 - absdiff 5631.99 percdiff 106.4470 tig 70 read 250293 pos 18887-28452 NOT confused by 3' edge to read 309105 - best edge read 513318 len 8349 erate 0.0290 score 8106.88 - alt edge len 2001 erate 0.0380 score 1924.96 - absdiff 6181.92 percdiff 123.2459 tig 70 read 250293 pos 18887-28452 NOT confused by 3' edge to read 442375 - best edge read 513318 len 8349 erate 0.0290 score 8106.88 - alt edge len 3243 erate 0.0435 score 3101.93 - absdiff 5004.95 percdiff 89.3039 tig 70 read 513318 pos 20103-29306 NOT confused by 3' edge to read 31994 - best edge read 443588 len 3942 erate 0.0358 score 3800.88 - alt edge len 1633 erate 0.0429 score 1562.94 - absdiff 2237.93 percdiff 83.4454 tig 70 read 513318 pos 20103-29306 NOT confused by 3' edge to read 31996 - best edge read 443588 len 3942 erate 0.0358 score 3800.88 - alt edge len 1636 erate 0.0385 score 1573.01 - absdiff 2227.86 percdiff 82.9143 tig 70 read 513318 pos 20103-29306 NOT confused by 3' edge to read 71416 - best edge read 443588 len 3942 erate 0.0358 score 3800.88 - alt edge len 1565 erate 0.0428 score 1498.02 - absdiff 2302.86 percdiff 86.9184 tig 70 read 513318 pos 20103-29306 IS confused by 3' edge to read 162477 - best edge read 443588 len 3942 erate 0.0358 score 3800.88 - alt edge len 1959 erate 0.0219 score 1916.10 - absdiff 1884.78 percdiff 65.9362 tig 70 read 513318 pos 20103-29306 NOT confused by 3' edge to read 239784 - best edge read 443588 len 3942 erate 0.0358 score 3800.88 - alt edge len 1488 erate 0.0444 score 1421.93 - absdiff 2378.94 percdiff 91.0982 tig 70 read 513318 pos 20103-29306 NOT confused by 3' edge to read 309105 - best edge read 443588 len 3942 erate 0.0358 score 3800.88 - alt edge len 1215 erate 0.0222 score 1188.03 - absdiff 2612.85 percdiff 104.7464 tig 70 read 513318 pos 20103-29306 IS confused by 3' edge to read 442375 - best edge read 443588 len 3942 erate 0.0358 score 3800.88 - alt edge len 1922 erate 0.0291 score 1866.07 - absdiff 1934.81 percdiff 68.2839 tig 70 read 443588 pos 25364-37682 NOT confused by 5' edge to read 328234 - best edge read 239784 len 7157 erate 0.0364 score 6896.49 - alt edge len 4891 erate 0.0320 score 4734.49 - absdiff 2162.00 percdiff 37.1765 tig 70 read 443588 pos 25364-37682 IS confused by 5' edge to read 529731 - best edge read 239784 len 7157 erate 0.0364 score 6896.49 - alt edge len 5800 erate 0.0365 score 5588.30 - absdiff 1308.19 percdiff 20.9565 tig 70 read 239784 pos 30525-39849 NOT confused by 5' edge to read 209695 - best edge read 443588 len 7180 erate 0.0364 score 6918.65 - alt edge len 2594 erate 0.0306 score 2514.62 - absdiff 4404.02 percdiff 93.3722 saved region 4636:7742 - 2 best edges are potentially confused saved region 16213:37765 - 3 best edges are potentially confused break tig 70 into up to 5 pieces: 0 4136 unique (length 4136) 4136 8242 repeat (length 4106) 8242 15713 unique (length 7471) 15713 38265 repeat (length 22552) 38265 42465 unique (length 4200) Creating Unitig 90615 Creating Unitig 90616 Creating Unitig 90617 Creating Unitig 90618 Creating Unitig 90619 For tig 70 unique region 0 4136 - 0/ 5 reads repeat/unique - unitig 90615 created. For tig 70 repeat region 4136 8242 - 26/ 0 reads repeat/unique - unitig 90616 created. For tig 70 unique region 8242 15713 - 0/ 14 reads repeat/unique - unitig 90617 created. For tig 70 repeat region 15713 38265 - 85/ 0 reads repeat/unique - unitig 90618 created. For tig 70 unique region 38265 42465 - 0/ 15 reads repeat/unique - unitig 90619 created. Annotating repeats in reads for tig 71/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 72/90584. Annotated with 163 overlaps. Scan reads to discard spanned repeats. discard region 0:7346 - contained in read 329640 0- 8795 discard region 9755:17946 - contained in read 333763 7755- 17946 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 73/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 75/90584. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 1133:6292 - contained in read 12395 0- 6800 discard region 6587:7960 - contained in read 436267 2101- 11076 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 76/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 77/90584. Annotated with 102 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5033:12998 - closest 5' read 129468 ( +1) 5032:12965 ( -33) saved region 5033:12998 - closest 3' read 129465 ( -2) 5035:12998 ( +0) search for confused edges: tig 77 read 129465 pos 5035-12998 IS confused by 3' edge to read 145507 - best edge read 16197 len 4455 erate 0.0346 score 4300.86 - alt edge len 2933 erate 0.0422 score 2809.23 - absdiff 1491.63 percdiff 41.9581 tig 77 read 129465 pos 5035-12998 IS confused by 3' edge to read 499363 - best edge read 16197 len 4455 erate 0.0346 score 4300.86 - alt edge len 3087 erate 0.0382 score 2969.08 - absdiff 1331.78 percdiff 36.6380 saved region 5033:12998 - 2 best edges are potentially confused break tig 77 into up to 2 pieces: 0 4533 unique (length 4533) 4533 12998 repeat (length 8465) Creating Unitig 90620 Creating Unitig 90621 For tig 77 unique region 0 4533 - 0/ 13 reads repeat/unique - unitig 90620 created. For tig 77 repeat region 4533 12998 - 26/ 0 reads repeat/unique - unitig 90621 created. Annotating repeats in reads for tig 80/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:1285 - contained in read 145557 0- 6058 discard region 4042:6062 - contained in read 145560 42- 6062 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 83/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. discard region 0:6790 - contained in read 23562 0- 8935 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 87/90584. Annotated with 67 overlaps. Scan reads to discard spanned repeats. discard region 7771:9891 - contained in read 17811 0- 11107 discard region 10990:11879 - contained in read 494576 3539- 14328 discard region 15328:19325 - contained in read 179789 8927- 19849 discard region 20356:20962 - contained in read 342807 17835- 25032 thickest edges to the repeat regions: saved region 22340:27572 - closest read 5730 ( +2) 22338:29160 ( +1588) (contained) saved region 22340:27572 - closest 5' read 5730 ( +2) 22338:29160 ( +1588) saved region 22340:27572 - closest 3' read 5730 ( +2) 22338:29160 ( +1588) search for confused edges: discard region 22340:27572 - no confusion in best edges Annotating repeats in reads for tig 88/90584. Annotated with 160 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3324:13094 - closest 5' read 514213 ( +1257) 2067:10162 ( -2932) saved region 3324:13094 - closest 3' read 151706 ( -1566) 4890:13094 ( +0) search for confused edges: tig 88 read 514213 pos 2067-10162 NOT confused by 3' edge to read 234299 - best edge read 151706 len 5272 erate 0.0209 score 5161.82 - alt edge len 1182 erate 0.0135 score 1166.04 - absdiff 3995.77 percdiff 126.2915 tig 88 read 514213 pos 2067-10162 NOT confused by 3' edge to read 234300 - best edge read 151706 len 5272 erate 0.0209 score 5161.82 - alt edge len 1151 erate 0.0201 score 1127.86 - absdiff 4033.95 percdiff 128.2720 tig 88 read 514213 pos 2067-10162 NOT confused by 3' edge to read 393730 - best edge read 151706 len 5272 erate 0.0209 score 5161.82 - alt edge len 1543 erate 0.0156 score 1518.93 - absdiff 3642.89 percdiff 109.0563 tig 88 read 514213 pos 2067-10162 NOT confused by 3' edge to read 393731 - best edge read 151706 len 5272 erate 0.0209 score 5161.82 - alt edge len 1510 erate 0.0120 score 1491.88 - absdiff 3669.94 percdiff 110.3127 tig 88 read 514213 pos 2067-10162 NOT confused by 3' edge to read 393732 - best edge read 151706 len 5272 erate 0.0209 score 5161.82 - alt edge len 1544 erate 0.0144 score 1521.77 - absdiff 3640.05 percdiff 108.9251 tig 88 read 514213 pos 2067-10162 NOT confused by 3' edge to read 416547 - best edge read 151706 len 5272 erate 0.0209 score 5161.82 - alt edge len 1642 erate 0.0152 score 1617.04 - absdiff 3544.77 percdiff 104.5832 tig 88 read 151706 pos 4890-13094 NOT confused by 3' edge to read 145506 - best edge read 514213 len 5279 erate 0.0209 score 5168.67 - alt edge len 1462 erate 0.0282 score 1420.77 - absdiff 3747.90 percdiff 113.7546 tig 88 read 151706 pos 4890-13094 NOT confused by 3' edge to read 145507 - best edge read 514213 len 5279 erate 0.0209 score 5168.67 - alt edge len 1440 erate 0.0224 score 1407.74 - absdiff 3760.92 percdiff 114.3762 tig 88 read 151706 pos 4890-13094 NOT confused by 3' edge to read 192536 - best edge read 514213 len 5279 erate 0.0209 score 5168.67 - alt edge len 2831 erate 0.0445 score 2705.02 - absdiff 2463.65 percdiff 62.5793 tig 88 read 151706 pos 4890-13094 NOT confused by 3' edge to read 221682 - best edge read 514213 len 5279 erate 0.0209 score 5168.67 - alt edge len 554 erate 0.0219 score 541.87 - absdiff 4626.80 percdiff 162.0444 tig 88 read 151706 pos 4890-13094 NOT confused by 3' edge to read 369576 - best edge read 514213 len 5279 erate 0.0209 score 5168.67 - alt edge len 1576 erate 0.0205 score 1543.69 - absdiff 3624.98 percdiff 108.0090 discard region 3324:13094 - no confusion in best edges Annotating repeats in reads for tig 89/90584. Annotated with 1518 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8423:10036 - closest read 215047 ( +4339) 4084:10232 ( +196) (contained) saved region 8423:10036 - closest read 215048 ( +4240) 4183:10256 ( +220) (contained) saved region 8423:10036 - closest read 215046 ( +2898) 5525:10189 ( +153) (contained) saved region 8423:10036 - closest read 156938 ( +1021) 7402:10140 ( +104) (contained) saved region 8423:10036 - closest read 36061 ( +916) 7507:10130 ( +94) (contained) saved region 8423:10036 - closest read 215045 ( +838) 7585:10208 ( +172) (contained) saved region 8423:10036 - closest 5' read 215048 ( +4240) 4183:10256 ( +220) saved region 8423:10036 - closest 3' read 215047 ( +4339) 4084:10232 ( +196) saved region 13571:22153 - closest 5' read 518902 ( +3993) 9578:15967 ( -6186) saved region 13571:22153 - closest 3' read 6140 ( -4825) 18396:22678 ( +525) saved region 22743:33325 - closest 5' read 385500 ( +1869) 20874:25776 ( -7549) saved region 22743:33325 - closest 3' read 326611 ( -3470) 26213:33365 ( +40) search for confused edges: tig 89 read 34326 pos 14491-20812 IS confused by 3' edge to read 68431 - best edge read 56231 len 1534 erate 0.0347 score 1480.77 - alt edge len 2577 erate 0.0342 score 2488.87 - absdiff 1008.10 percdiff 50.7904 tig 89 read 34326 pos 14491-20812 IS confused by 5' edge to read 442050 - best edge read 518906 len 1439 erate 0.0314 score 1393.82 - alt edge len 1075 erate 0.0345 score 1037.91 - absdiff 355.90 percdiff 29.2716 tig 89 read 34326 pos 14491-20812 IS confused by 5' edge to read 442051 - best edge read 518906 len 1439 erate 0.0314 score 1393.82 - alt edge len 1119 erate 0.0368 score 1077.82 - absdiff 315.99 percdiff 25.5697 tig 89 read 56231 pos 19278-25770 IS confused by 3' edge to read 9556 - best edge read 170297 len 1503 erate 0.0213 score 1470.99 - alt edge len 681 erate 0.0267 score 662.82 - absdiff 808.17 percdiff 75.7491 tig 89 read 56231 pos 19278-25770 IS confused by 3' edge to read 97422 - best edge read 170297 len 1503 erate 0.0213 score 1470.99 - alt edge len 725 erate 0.0251 score 706.80 - absdiff 764.18 percdiff 70.1798 tig 89 read 56231 pos 19278-25770 IS confused by 3' edge to read 383583 - best edge read 170297 len 1503 erate 0.0213 score 1470.99 - alt edge len 718 erate 0.0211 score 702.85 - absdiff 768.14 percdiff 70.6710 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 39725 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 2267 erate 0.0400 score 2176.32 - absdiff 4539.53 percdiff 102.1018 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 81370 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 1840 erate 0.0332 score 1778.91 - absdiff 4936.94 percdiff 116.2349 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 97422 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 3103 erate 0.0424 score 2971.43 - absdiff 3744.42 percdiff 77.3059 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 124233 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 1429 erate 0.0323 score 1382.84 - absdiff 5333.01 percdiff 131.7005 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 209259 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 641 erate 0.0360 score 617.92 - absdiff 6097.93 percdiff 166.2971 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 236899 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 687 erate 0.0249 score 669.89 - absdiff 6045.96 percdiff 163.7197 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 258664 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 1649 erate 0.0291 score 1601.01 - absdiff 5114.84 percdiff 122.9992 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 258669 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 1646 erate 0.0267 score 1602.05 - absdiff 5113.80 percdiff 122.9589 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 264038 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 748 erate 0.0348 score 721.97 - absdiff 5993.88 percdiff 161.1731 tig 89 read 238832 pos 24570-31809 NOT confused by 5' edge to read 376636 - best edge read 170297 len 5118 erate 0.0383 score 4921.98 - alt edge len 1267 erate 0.0230 score 1237.86 - absdiff 3684.12 percdiff 119.6175 tig 89 read 238832 pos 24570-31809 NOT confused by 5' edge to read 376637 - best edge read 170297 len 5118 erate 0.0383 score 4921.98 - alt edge len 1325 erate 0.0257 score 1290.95 - absdiff 3631.03 percdiff 116.8864 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 383582 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 2899 erate 0.0377 score 2789.71 - absdiff 3926.15 percdiff 82.6073 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 383583 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 3098 erate 0.0322 score 2998.24 - absdiff 3717.61 percdiff 76.5405 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 394729 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 3104 erate 0.0408 score 2977.36 - absdiff 3738.50 percdiff 77.1364 tig 89 read 238832 pos 24570-31809 NOT confused by 5' edge to read 400747 - best edge read 170297 len 5118 erate 0.0383 score 4921.98 - alt edge len 2606 erate 0.0277 score 2533.81 - absdiff 2388.17 percdiff 64.0620 tig 89 read 238832 pos 24570-31809 NOT confused by 5' edge to read 400749 - best edge read 170297 len 5118 erate 0.0383 score 4921.98 - alt edge len 2611 erate 0.0246 score 2546.77 - absdiff 2375.21 percdiff 63.6040 tig 89 read 238832 pos 24570-31809 NOT confused by 5' edge to read 400750 - best edge read 170297 len 5118 erate 0.0383 score 4921.98 - alt edge len 2584 erate 0.0308 score 2504.41 - absdiff 2417.57 percdiff 65.1075 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 402645 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 2582 erate 0.0409 score 2476.40 - absdiff 4239.46 percdiff 92.2398 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 402648 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 2593 erate 0.0447 score 2477.09 - absdiff 4238.76 percdiff 92.2177 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 407648 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 575 erate 0.0368 score 553.84 - absdiff 6162.01 percdiff 169.5261 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 418361 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 684 erate 0.0292 score 664.03 - absdiff 6051.83 percdiff 164.0088 tig 89 read 238832 pos 24570-31809 IS confused by 5' edge to read 445536 - best edge read 170297 len 5118 erate 0.0383 score 4921.98 - alt edge len 3436 erate 0.0405 score 3296.84 - absdiff 1625.14 percdiff 39.5467 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 458079 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 2204 erate 0.0414 score 2112.75 - absdiff 4603.10 percdiff 104.2769 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 458080 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 2083 erate 0.0412 score 1997.18 - absdiff 4718.67 percdiff 108.3130 tig 89 read 238832 pos 24570-31809 NOT confused by 3' edge to read 490545 - best edge read 289935 len 6935 erate 0.0316 score 6715.85 - alt edge len 1710 erate 0.0234 score 1669.99 - absdiff 5045.87 percdiff 120.3426 tig 89 read 238832 pos 24570-31809 NOT confused by 5' edge to read 506094 - best edge read 170297 len 5118 erate 0.0383 score 4921.98 - alt edge len 2440 erate 0.0263 score 2375.83 - absdiff 2546.15 percdiff 69.7786 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 6176 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3058 erate 0.0278 score 2972.99 - absdiff 4117.87 percdiff 81.8349 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 6177 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3003 erate 0.0280 score 2918.92 - absdiff 4171.94 percdiff 83.3573 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 9556 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3582 erate 0.0299 score 3474.90 - absdiff 3615.96 percdiff 68.4468 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 11919 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 702 erate 0.0375 score 675.68 - absdiff 6415.18 percdiff 165.2007 tig 89 read 289935 pos 24874-32287 NOT confused by 3' edge to read 36821 - best edge read 238832 len 6861 erate 0.0315 score 6644.88 - alt edge len 3800 erate 0.0438 score 3633.56 - absdiff 3011.32 percdiff 58.5949 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 39725 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 2785 erate 0.0248 score 2715.93 - absdiff 4374.92 percdiff 89.2224 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 81370 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 2394 erate 0.0330 score 2315.00 - absdiff 4775.86 percdiff 101.5508 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 83618 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 4226 erate 0.0258 score 4116.97 - absdiff 2973.89 percdiff 53.0680 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 97422 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3627 erate 0.0288 score 3522.54 - absdiff 3568.31 percdiff 67.2417 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 100374 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3292 erate 0.0348 score 3177.44 - absdiff 3913.42 percdiff 76.2233 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 124233 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 1978 erate 0.0349 score 1908.97 - absdiff 5181.89 percdiff 115.1553 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 184649 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3928 erate 0.0341 score 3794.06 - absdiff 3296.80 percdiff 60.5756 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 209257 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 871 erate 0.0265 score 847.92 - absdiff 6242.94 percdiff 157.2771 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 209259 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 1185 erate 0.0371 score 1141.04 - absdiff 5949.82 percdiff 144.5553 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 258664 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 2200 erate 0.0286 score 2137.08 - absdiff 4953.78 percdiff 107.3648 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 258669 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 2197 erate 0.0278 score 2135.92 - absdiff 4954.93 percdiff 107.4033 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 264038 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 1295 erate 0.0324 score 1253.04 - absdiff 5837.81 percdiff 139.9301 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 362314 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 1050 erate 0.0346 score 1013.67 - absdiff 6077.19 percdiff 149.9702 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 362315 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 1043 erate 0.0357 score 1005.76 - absdiff 6085.09 percdiff 150.3119 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 366916 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 4240 erate 0.0422 score 4061.07 - absdiff 3029.78 percdiff 54.3365 tig 89 read 289935 pos 24874-32287 NOT confused by 3' edge to read 376636 - best edge read 238832 len 6861 erate 0.0315 score 6644.88 - alt edge len 954 erate 0.0325 score 923.00 - absdiff 5721.88 percdiff 151.2151 tig 89 read 289935 pos 24874-32287 NOT confused by 3' edge to read 376637 - best edge read 238832 len 6861 erate 0.0315 score 6644.88 - alt edge len 1012 erate 0.0326 score 979.01 - absdiff 5665.87 percdiff 148.6347 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 378862 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 965 erate 0.0332 score 932.96 - absdiff 6157.89 percdiff 153.4904 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 383582 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3421 erate 0.0244 score 3337.53 - absdiff 3753.33 percdiff 71.9829 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 383583 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3619 erate 0.0163 score 3560.01 - absdiff 3530.85 percdiff 66.3016 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 394729 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3629 erate 0.0283 score 3526.30 - absdiff 3564.56 percdiff 67.1471 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 394730 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3619 erate 0.0357 score 3489.80 - absdiff 3601.05 percdiff 68.0686 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 398107 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3360 erate 0.0337 score 3246.77 - absdiff 3844.09 percdiff 74.3708 tig 89 read 289935 pos 24874-32287 NOT confused by 3' edge to read 400747 - best edge read 238832 len 6861 erate 0.0315 score 6644.88 - alt edge len 2305 erate 0.0253 score 2246.68 - absdiff 4398.19 percdiff 98.9296 tig 89 read 289935 pos 24874-32287 NOT confused by 3' edge to read 400749 - best edge read 238832 len 6861 erate 0.0315 score 6644.88 - alt edge len 2310 erate 0.0217 score 2259.87 - absdiff 4385.01 percdiff 98.4869 tig 89 read 289935 pos 24874-32287 NOT confused by 3' edge to read 400750 - best edge read 238832 len 6861 erate 0.0315 score 6644.88 - alt edge len 2283 erate 0.0287 score 2217.48 - absdiff 4427.40 percdiff 99.9147 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 402645 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3102 erate 0.0233 score 3029.72 - absdiff 4061.13 percdiff 80.2549 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 402648 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 3113 erate 0.0282 score 3025.21 - absdiff 4065.64 percdiff 80.3799 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 407643 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 1107 erate 0.0411 score 1061.50 - absdiff 6029.35 percdiff 147.9168 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 407648 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 1119 erate 0.0357 score 1079.05 - absdiff 6011.80 percdiff 147.1695 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 418361 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 1229 erate 0.0399 score 1179.96 - absdiff 5910.89 percdiff 142.9337 tig 89 read 289935 pos 24874-32287 NOT confused by 3' edge to read 445536 - best edge read 238832 len 6861 erate 0.0315 score 6644.88 - alt edge len 3127 erate 0.0409 score 2999.11 - absdiff 3645.77 percdiff 75.6072 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 458079 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 2722 erate 0.0243 score 2655.86 - absdiff 4435.00 percdiff 91.0051 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 458080 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 2601 erate 0.0204 score 2547.94 - absdiff 4542.92 percdiff 94.2632 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 459664 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 4304 erate 0.0409 score 4127.97 - absdiff 2962.89 percdiff 52.8200 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 467700 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 795 erate 0.0436 score 760.34 - absdiff 6330.52 percdiff 161.2626 tig 89 read 289935 pos 24874-32287 NOT confused by 5' edge to read 490545 - best edge read 423011 len 7240 erate 0.0206 score 7090.86 - alt edge len 2262 erate 0.0318 score 2190.07 - absdiff 4900.79 percdiff 105.6099 tig 89 read 289935 pos 24874-32287 NOT confused by 3' edge to read 506094 - best edge read 238832 len 6861 erate 0.0315 score 6644.88 - alt edge len 2140 erate 0.0220 score 2092.92 - absdiff 4551.96 percdiff 104.1901 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 6176 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 3081 erate 0.0344 score 2975.01 - absdiff 3235.91 percdiff 70.4536 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 6177 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 3026 erate 0.0347 score 2921.00 - absdiff 3289.93 percdiff 72.0534 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 25365 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 915 erate 0.0284 score 889.01 - absdiff 6165.35 percdiff 155.2324 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 25366 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 562 erate 0.0304 score 544.92 - absdiff 6509.44 percdiff 171.3175 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 36821 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3625 erate 0.0243 score 3536.91 - absdiff 3517.45 percdiff 66.4216 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 39725 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 2810 erate 0.0285 score 2729.91 - absdiff 3481.01 percdiff 77.8677 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 41614 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3002 erate 0.0268 score 2921.55 - absdiff 4132.81 percdiff 82.8559 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 43611 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 1988 erate 0.0171 score 1954.01 - absdiff 5100.35 percdiff 113.2360 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 83618 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 4240 erate 0.0328 score 4100.93 - absdiff 2110.00 percdiff 40.9238 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 97422 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 3646 erate 0.0332 score 3524.95 - absdiff 2685.98 percdiff 55.1768 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 120433 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 2792 erate 0.0276 score 2714.94 - absdiff 4339.42 percdiff 88.8379 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 120434 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 2866 erate 0.0308 score 2777.73 - absdiff 4276.63 percdiff 86.9934 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 147282 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 4342 erate 0.0237 score 4239.09 - absdiff 2815.26 percdiff 49.8566 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 184649 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3343 erate 0.0231 score 3265.78 - absdiff 3788.58 percdiff 73.4212 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 193774 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3127 erate 0.0264 score 3044.45 - absdiff 4009.91 percdiff 79.4136 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 197204 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 1959 erate 0.0328 score 1894.74 - absdiff 5159.61 percdiff 115.3102 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 200277 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3391 erate 0.0248 score 3306.90 - absdiff 3747.46 percdiff 72.3359 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 200278 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3510 erate 0.0177 score 3447.87 - absdiff 3606.49 percdiff 68.6804 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 225280 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3340 erate 0.0299 score 3240.13 - absdiff 3814.23 percdiff 74.1022 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 225281 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3189 erate 0.0299 score 3093.65 - absdiff 3960.71 percdiff 78.0589 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 258664 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 2226 erate 0.0355 score 2146.98 - absdiff 4063.95 percdiff 97.2481 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 258669 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 2223 erate 0.0360 score 2142.97 - absdiff 4067.96 percdiff 97.3906 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 345008 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3712 erate 0.0205 score 3635.90 - absdiff 3418.46 percdiff 63.9546 tig 89 read 423011 pos 25047-32302 IS confused by 5' edge to read 366916 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 5935 erate 0.0217 score 5806.21 - absdiff 1248.15 percdiff 19.4105 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 376636 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 781 erate 0.0205 score 764.99 - absdiff 6289.37 percdiff 160.8668 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 376637 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 839 erate 0.0215 score 820.96 - absdiff 6233.40 percdiff 158.3021 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 394729 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 3647 erate 0.0310 score 3533.94 - absdiff 2676.99 percdiff 54.9414 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 394730 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 3638 erate 0.0383 score 3498.66 - absdiff 2712.26 percdiff 55.8677 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 398107 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 3380 erate 0.0376 score 3252.91 - absdiff 2958.02 percdiff 62.5120 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 400747 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 2128 erate 0.0222 score 2080.76 - absdiff 4973.60 percdiff 108.8897 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 400749 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 2133 erate 0.0202 score 2089.91 - absdiff 4964.45 percdiff 108.5804 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 400750 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 2106 erate 0.0240 score 2055.46 - absdiff 4998.90 percdiff 109.7476 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 402645 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 3125 erate 0.0282 score 3036.88 - absdiff 3174.05 percdiff 68.6445 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 402648 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 3135 erate 0.0325 score 3033.11 - absdiff 3177.82 percdiff 68.7538 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 405295 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 837 erate 0.0311 score 810.97 - absdiff 6243.39 percdiff 158.7573 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 416999 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 1393 erate 0.0314 score 1349.26 - absdiff 5705.10 percdiff 135.7772 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 433343 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 1823 erate 0.0291 score 1769.95 - absdiff 5284.41 percdiff 119.7693 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 433344 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 1827 erate 0.0280 score 1775.84 - absdiff 5278.52 percdiff 119.5559 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 435911 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 1880 erate 0.0287 score 1826.04 - absdiff 5228.32 percdiff 117.7495 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 436471 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 1143 erate 0.0227 score 1117.05 - absdiff 5937.31 percdiff 145.3189 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 440902 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 5025 erate 0.0187 score 4931.03 - absdiff 2123.33 percdiff 35.4319 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 443010 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3115 erate 0.0157 score 3066.09 - absdiff 3988.26 percdiff 78.8159 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 445536 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 2955 erate 0.0253 score 2880.24 - absdiff 4174.12 percdiff 84.0320 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 459664 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 1509 erate 0.0308 score 1462.52 - absdiff 5591.84 percdiff 131.3118 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 480886 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 813 erate 0.0332 score 786.01 - absdiff 6268.35 percdiff 159.8994 tig 89 read 423011 pos 25047-32302 NOT confused by 3' edge to read 490545 - best edge read 51583 len 6405 erate 0.0303 score 6210.93 - alt edge len 2287 erate 0.0398 score 2195.98 - absdiff 4014.95 percdiff 95.5155 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 502484 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3625 erate 0.0207 score 3549.96 - absdiff 3504.40 percdiff 66.0937 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 502485 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 3748 erate 0.0383 score 3604.45 - absdiff 3449.91 percdiff 64.7334 tig 89 read 423011 pos 25047-32302 NOT confused by 5' edge to read 506094 - best edge read 289935 len 7202 erate 0.0205 score 7054.36 - alt edge len 1964 erate 0.0194 score 1925.90 - absdiff 5128.46 percdiff 114.2163 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 15260 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2821 erate 0.0391 score 2710.70 - absdiff 3521.87 percdiff 78.7602 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 36821 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2799 erate 0.0259 score 2726.51 - absdiff 3506.06 percdiff 78.2684 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 41614 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2167 erate 0.0295 score 2103.07 - absdiff 4129.49 percdiff 99.0804 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 43611 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 1144 erate 0.0210 score 1119.98 - absdiff 5112.59 percdiff 139.0700 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 147282 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 3529 erate 0.0287 score 3427.72 - absdiff 2804.85 percdiff 58.0697 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 184649 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2512 erate 0.0286 score 2440.16 - absdiff 3792.41 percdiff 87.4560 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 193774 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2292 erate 0.0332 score 2215.91 - absdiff 4016.66 percdiff 95.0861 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 200277 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2560 erate 0.0292 score 2485.25 - absdiff 3747.32 percdiff 85.9692 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 200278 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2680 erate 0.0237 score 2616.48 - absdiff 3616.08 percdiff 81.7281 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 225280 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2509 erate 0.0434 score 2400.11 - absdiff 3832.46 percdiff 88.7895 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 225281 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2353 erate 0.0379 score 2263.82 - absdiff 3968.74 percdiff 93.4219 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 264038 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 1127 erate 0.0275 score 1096.01 - absdiff 5136.56 percdiff 140.1789 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 345008 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2893 erate 0.0287 score 2809.97 - absdiff 3422.59 percdiff 75.6999 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 366916 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 1502 erate 0.0257 score 1463.40 - absdiff 4769.17 percdiff 123.9394 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 369723 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2861 erate 0.0433 score 2737.12 - absdiff 3495.45 percdiff 77.9391 tig 89 read 51583 pos 25897-32879 NOT confused by 5' edge to read 383583 - best edge read 121025 len 6682 erate 0.0427 score 6396.68 - alt edge len 4186 erate 0.0407 score 4015.63 - absdiff 2381.05 percdiff 45.7353 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 400747 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 1288 erate 0.0277 score 1252.32 - absdiff 4980.24 percdiff 133.0746 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 400749 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 1293 erate 0.0260 score 1259.38 - absdiff 4973.18 percdiff 132.7608 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 400750 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 1266 erate 0.0316 score 1225.99 - absdiff 5006.57 percdiff 134.2503 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 433343 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 977 erate 0.0350 score 942.80 - absdiff 5289.76 percdiff 147.4422 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 433344 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 981 erate 0.0352 score 946.47 - absdiff 5286.10 percdiff 147.2648 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 435911 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 1034 erate 0.0310 score 1001.95 - absdiff 5230.62 percdiff 144.6019 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 440902 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 4216 erate 0.0310 score 4085.30 - absdiff 2147.26 percdiff 41.6222 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 443010 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2280 erate 0.0172 score 2240.78 - absdiff 3991.78 percdiff 94.2197 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 445536 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2120 erate 0.0343 score 2047.28 - absdiff 4185.28 percdiff 101.0956 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 459664 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 4299 erate 0.0430 score 4114.14 - absdiff 2118.42 percdiff 40.9487 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 502484 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 2799 erate 0.0263 score 2725.39 - absdiff 3507.18 percdiff 78.3031 tig 89 read 51583 pos 25897-32879 NOT confused by 3' edge to read 506094 - best edge read 423011 len 6468 erate 0.0364 score 6232.56 - alt edge len 1120 erate 0.0263 score 1090.54 - absdiff 5142.02 percdiff 140.4327 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 36821 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 2495 erate 0.0294 score 2421.65 - absdiff 3925.25 percdiff 89.5303 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 41614 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 1861 erate 0.0369 score 1792.33 - absdiff 4554.57 percdiff 111.9165 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 43611 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 843 erate 0.0416 score 807.93 - absdiff 5538.97 percdiff 154.8316 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 120433 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 1648 erate 0.0362 score 1588.34 - absdiff 4758.56 percdiff 119.9348 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 120434 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 1723 erate 0.0371 score 1659.08 - absdiff 4687.82 percdiff 117.1081 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 147282 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 3225 erate 0.0302 score 3127.61 - absdiff 3219.29 percdiff 67.9570 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 184649 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 2208 erate 0.0335 score 2134.03 - absdiff 4212.87 percdiff 99.3492 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 193774 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 1989 erate 0.0393 score 1910.83 - absdiff 4436.07 percdiff 107.4403 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 200277 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 2256 erate 0.0357 score 2175.46 - absdiff 4171.44 percdiff 97.8940 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 200278 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 2377 erate 0.0275 score 2311.63 - absdiff 4035.27 percdiff 93.2090 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 225280 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 2205 erate 0.0339 score 2130.25 - absdiff 4216.65 percdiff 99.4827 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 225281 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 2051 erate 0.0365 score 1976.14 - absdiff 4370.76 percdiff 105.0280 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 345008 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 2588 erate 0.0317 score 2505.96 - absdiff 3840.94 percdiff 86.7728 tig 89 read 121025 pos 26197-32970 IS confused by 3' edge to read 366916 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 4807 erate 0.0283 score 4670.96 - absdiff 1675.94 percdiff 30.4222 tig 89 read 121025 pos 26197-32970 NOT confused by 5' edge to read 383582 - best edge read 326611 len 6757 erate 0.0254 score 6585.37 - alt edge len 4083 erate 0.0312 score 3955.61 - absdiff 2629.76 percdiff 49.8960 tig 89 read 121025 pos 26197-32970 NOT confused by 5' edge to read 383583 - best edge read 326611 len 6757 erate 0.0254 score 6585.37 - alt edge len 4281 erate 0.0223 score 4185.53 - absdiff 2399.84 percdiff 44.5615 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 440902 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 3910 erate 0.0277 score 3801.69 - absdiff 2545.21 percdiff 50.1588 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 443010 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 1977 erate 0.0275 score 1922.63 - absdiff 4424.27 percdiff 107.0016 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 445536 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 1812 erate 0.0376 score 1743.87 - absdiff 4603.03 percdiff 113.7848 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 459664 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 3986 erate 0.0404 score 3824.97 - absdiff 2521.93 percdiff 49.5865 tig 89 read 121025 pos 26197-32970 NOT confused by 3' edge to read 502484 - best edge read 51583 len 6630 erate 0.0427 score 6346.90 - alt edge len 2495 erate 0.0307 score 2418.40 - absdiff 3928.50 percdiff 89.6374 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 19297 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 1497 erate 0.0377 score 1440.56 - absdiff 5144.81 percdiff 128.2046 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 36821 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 2458 erate 0.0269 score 2391.88 - absdiff 4193.49 percdiff 93.4249 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 41614 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 1835 erate 0.0307 score 1778.67 - absdiff 4806.71 percdiff 114.9375 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 43611 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 825 erate 0.0327 score 798.02 - absdiff 5787.35 percdiff 156.7666 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 120433 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 1625 erate 0.0297 score 1576.74 - absdiff 5008.63 percdiff 122.7289 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 120434 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 1699 erate 0.0339 score 1641.40 - absdiff 4943.97 percdiff 120.1921 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 147282 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 3189 erate 0.0278 score 3100.35 - absdiff 3485.03 percdiff 71.9622 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 184649 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 2174 erate 0.0300 score 2108.78 - absdiff 4476.59 percdiff 102.9794 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 193774 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 1960 erate 0.0376 score 1886.30 - absdiff 4699.07 percdiff 110.9360 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 200277 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 2222 erate 0.0333 score 2148.01 - absdiff 4437.36 percdiff 101.6185 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 200278 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 2343 erate 0.0248 score 2284.89 - absdiff 4300.48 percdiff 96.9639 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 225280 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 2171 erate 0.0292 score 2107.61 - absdiff 4477.77 percdiff 103.0203 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 225281 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 2020 erate 0.0298 score 1959.80 - absdiff 4625.57 percdiff 108.2615 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 345008 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 2549 erate 0.0292 score 2474.57 - absdiff 4110.80 percdiff 90.7468 tig 89 read 326611 pos 26213-33365 IS confused by 3' edge to read 366916 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 4785 erate 0.0247 score 4666.81 - absdiff 1918.56 percdiff 34.1011 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 400747 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 966 erate 0.0369 score 930.35 - absdiff 5655.02 percdiff 150.4849 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 400749 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 971 erate 0.0356 score 936.43 - absdiff 5648.94 percdiff 150.2017 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 400750 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 944 erate 0.0433 score 903.12 - absdiff 5682.25 percdiff 151.7594 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 440902 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 3870 erate 0.0263 score 3768.22 - absdiff 2817.15 percdiff 54.4189 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 443010 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 1948 erate 0.0211 score 1906.90 - absdiff 4678.48 percdiff 110.1820 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 445536 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 1788 erate 0.0317 score 1731.32 - absdiff 4854.05 percdiff 116.7303 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 459664 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 3953 erate 0.0403 score 3793.69 - absdiff 2791.68 percdiff 53.7944 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 502484 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 2460 erate 0.0297 score 2386.94 - absdiff 4198.43 percdiff 93.5865 tig 89 read 326611 pos 26213-33365 NOT confused by 3' edge to read 506094 - best edge read 121025 len 6757 erate 0.0254 score 6585.37 - alt edge len 801 erate 0.0368 score 771.52 - absdiff 5813.85 percdiff 158.0517 discard region 8423:10036 - no confusion in best edges saved region 13571:22153 - 3 best edges are potentially confused saved region 22743:33325 - 7 best edges are potentially confused merge extended regions 13071:22653 and 22243:33825 break tig 89 into up to 3 pieces: 0 13071 unique (length 13071) 13071 33825 repeat (length 20754) 33825 33992 unique (length 167) Creating Unitig 90622 Creating Unitig 90623 Creating Unitig 90624 For tig 89 unique region 0 13071 - 0/ 25 reads repeat/unique - unitig 90622 created. For tig 89 repeat region 13071 33825 - 154/ 0 reads repeat/unique - unitig 90623 created. For tig 89 unique region 33825 33992 - 0/ 2 reads repeat/unique - unitig 90624 created. Annotating repeats in reads for tig 90/90584. Annotated with 203 overlaps. Scan reads to discard spanned repeats. discard region 34261:34976 - contained in read 273442 29280- 37880 thickest edges to the repeat regions: saved region 15620:34202 - closest 5' read 434561 ( +1647) 13973:24335 ( -9867) saved region 15620:34202 - closest 3' read 142927 ( -4885) 20505:34303 ( +101) search for confused edges: tig 90 read 42637 pos 17788-24579 NOT confused by 3' edge to read 130487 - best edge read 42638 len 6790 erate 0.0071 score 6741.79 - alt edge len 609 erate 0.0315 score 589.82 - absdiff 6151.97 percdiff 167.8206 tig 90 read 42637 pos 17788-24579 NOT confused by 5' edge to read 243022 - best edge read 434561 len 6547 erate 0.0073 score 6499.21 - alt edge len 1277 erate 0.0182 score 1253.76 - absdiff 5245.45 percdiff 135.3146 tig 90 read 42637 pos 17788-24579 NOT confused by 5' edge to read 243025 - best edge read 434561 len 6547 erate 0.0073 score 6499.21 - alt edge len 1396 erate 0.0151 score 1374.92 - absdiff 5124.29 percdiff 130.1550 tig 90 read 42637 pos 17788-24579 NOT confused by 3' edge to read 474179 - best edge read 42638 len 6790 erate 0.0071 score 6741.79 - alt edge len 630 erate 0.0397 score 604.99 - absdiff 6136.80 percdiff 167.0610 tig 90 read 42638 pos 17796-24581 NOT confused by 5' edge to read 130487 - best edge read 42636 len 6732 erate 0.0076 score 6680.84 - alt edge len 614 erate 0.0297 score 595.76 - absdiff 6085.07 percdiff 167.2504 tig 90 read 42638 pos 17796-24581 NOT confused by 3' edge to read 243022 - best edge read 42637 len 6783 erate 0.0071 score 6734.84 - alt edge len 1272 erate 0.0198 score 1246.81 - absdiff 5488.03 percdiff 137.5160 tig 90 read 42638 pos 17796-24581 NOT confused by 3' edge to read 243025 - best edge read 42637 len 6783 erate 0.0071 score 6734.84 - alt edge len 1389 erate 0.0151 score 1368.03 - absdiff 5366.81 percdiff 132.4671 tig 90 read 42638 pos 17796-24581 NOT confused by 5' edge to read 474179 - best edge read 42636 len 6732 erate 0.0076 score 6680.84 - alt edge len 635 erate 0.0333 score 613.85 - absdiff 6066.98 percdiff 166.3397 tig 90 read 42636 pos 17848-24586 NOT confused by 5' edge to read 130487 - best edge read 114154 len 6709 erate 0.0078 score 6656.67 - alt edge len 618 erate 0.0245 score 602.86 - absdiff 6053.81 percdiff 166.7825 tig 90 read 42636 pos 17848-24586 NOT confused by 3' edge to read 243022 - best edge read 42638 len 6733 erate 0.0076 score 6681.83 - alt edge len 1224 erate 0.0207 score 1198.66 - absdiff 5483.17 percdiff 139.1580 tig 90 read 42636 pos 17848-24586 NOT confused by 3' edge to read 243025 - best edge read 42638 len 6733 erate 0.0076 score 6681.83 - alt edge len 1341 erate 0.0180 score 1316.86 - absdiff 5364.97 percdiff 134.1461 tig 90 read 42636 pos 17848-24586 NOT confused by 5' edge to read 474179 - best edge read 114154 len 6709 erate 0.0078 score 6656.67 - alt edge len 639 erate 0.0330 score 617.91 - absdiff 6038.76 percdiff 166.0235 tig 90 read 114154 pos 17879-27603 NOT confused by 3' edge to read 243022 - best edge read 42636 len 6707 erate 0.0078 score 6654.69 - alt edge len 1192 erate 0.0195 score 1168.76 - absdiff 5485.93 percdiff 140.2434 tig 90 read 114154 pos 17879-27603 NOT confused by 3' edge to read 243025 - best edge read 42636 len 6707 erate 0.0078 score 6654.69 - alt edge len 1304 erate 0.0123 score 1287.96 - absdiff 5366.72 percdiff 135.1369 tig 90 read 114154 pos 17879-27603 NOT confused by 5' edge to read 381353 - best edge read 142927 len 7082 erate 0.0212 score 6931.86 - alt edge len 2303 erate 0.0191 score 2259.01 - absdiff 4672.85 percdiff 101.6845 tig 90 read 142927 pos 20505-34303 NOT confused by 3' edge to read 308756 - best edge read 114154 len 7098 erate 0.0212 score 6947.52 - alt edge len 3666 erate 0.0109 score 3626.04 - absdiff 3321.48 percdiff 62.8262 tig 90 read 142927 pos 20505-34303 NOT confused by 3' edge to read 308757 - best edge read 114154 len 7098 erate 0.0212 score 6947.52 - alt edge len 3649 erate 0.0096 score 3613.97 - absdiff 3333.55 percdiff 63.1266 discard region 15620:34202 - no confusion in best edges Annotating repeats in reads for tig 91/90584. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 5472:8968 - contained in read 277409 3880- 11028 thickest edges to the repeat regions: saved region 8958:16984 - closest 5' read 159858 ( +46) 8912:15196 ( -1788) saved region 8958:16984 - closest 3' read 64008 ( -427) 9385:17226 ( +242) search for confused edges: tig 91 read 147427 pos 9120-16407 NOT confused by 3' edge to read 162325 - best edge read 159858 len 6127 erate 0.0305 score 5940.13 - alt edge len 2678 erate 0.0340 score 2586.95 - absdiff 3353.18 percdiff 78.6478 tig 91 read 147427 pos 9120-16407 NOT confused by 3' edge to read 162326 - best edge read 159858 len 6127 erate 0.0305 score 5940.13 - alt edge len 2658 erate 0.0350 score 2564.97 - absdiff 3375.16 percdiff 79.3679 tig 91 read 147427 pos 9120-16407 NOT confused by 3' edge to read 162327 - best edge read 159858 len 6127 erate 0.0305 score 5940.13 - alt edge len 2692 erate 0.0327 score 2603.97 - absdiff 3336.15 percdiff 78.0926 tig 91 read 41172 pos 9332-16786 NOT confused by 5' edge to read 162325 - best edge read 147427 len 7036 erate 0.0313 score 6815.77 - alt edge len 2464 erate 0.0362 score 2374.80 - absdiff 4440.97 percdiff 96.6418 tig 91 read 41172 pos 9332-16786 NOT confused by 5' edge to read 162326 - best edge read 147427 len 7036 erate 0.0313 score 6815.77 - alt edge len 2444 erate 0.0361 score 2355.77 - absdiff 4460.00 percdiff 97.2574 tig 91 read 41172 pos 9332-16786 NOT confused by 5' edge to read 162327 - best edge read 147427 len 7036 erate 0.0313 score 6815.77 - alt edge len 2479 erate 0.0347 score 2392.98 - absdiff 4422.79 percdiff 96.0563 tig 91 read 64008 pos 9385-17226 NOT confused by 5' edge to read 162327 - best edge read 41172 len 7379 erate 0.0169 score 7254.29 - alt edge len 2407 erate 0.0449 score 2298.93 - absdiff 4955.37 percdiff 103.7424 discard region 8958:16984 - no confusion in best edges Annotating repeats in reads for tig 93/90584. Annotated with 117 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 20:8700 - closest 5' read 142747 ( +2) 18:8086 ( -614) saved region 20:8700 - closest 3' read 514505 ( -1240) 1260:8700 ( +0) search for confused edges: tig 93 read 142747 pos 18-8086 NOT confused by 3' edge to read 235700 - best edge read 514505 len 6826 erate 0.0230 score 6669.00 - alt edge len 1728 erate 0.0383 score 1661.82 - absdiff 5007.18 percdiff 120.2087 tig 93 read 514505 pos 1260-8700 NOT confused by 3' edge to read 305596 - best edge read 142747 len 6796 erate 0.0230 score 6639.69 - alt edge len 1646 erate 0.0243 score 1606.00 - absdiff 5033.69 percdiff 122.0926 discard region 20:8700 - no confusion in best edges Annotating repeats in reads for tig 102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 103/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 1664:4909 - contained in read 508691 0- 5721 discard region 4997:6284 - contained in read 290765 661- 9230 thickest edges to the repeat regions: saved region 8441:14138 - closest read 250811 ( +150) 8291:14138 ( +0) (contained) saved region 8441:14138 - closest 5' read 250811 ( +150) 8291:14138 ( +0) saved region 8441:14138 - closest 3' read 250811 ( +150) 8291:14138 ( +0) search for confused edges: discard region 8441:14138 - no confusion in best edges Annotating repeats in reads for tig 106/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6838:7887 - contained in read 221682 2806- 8429 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 107/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 0:2169 - contained in read 459057 0- 9252 thickest edges to the repeat regions: saved region 2775:10088 - closest 5' read 459057 ( +2775) 0:9252 ( -836) saved region 2775:10088 - closest 3' read 3305 ( -1444) 4219:10745 ( +657) search for confused edges: tig 107 read 3305 pos 4219-10745 NOT confused by 3' edge to read 105676 - best edge read 459057 len 5033 erate 0.0189 score 4937.88 - alt edge len 1495 erate 0.0188 score 1466.89 - absdiff 3470.98 percdiff 108.3874 tig 107 read 3305 pos 4219-10745 NOT confused by 3' edge to read 265066 - best edge read 459057 len 5033 erate 0.0189 score 4937.88 - alt edge len 1994 erate 0.0301 score 1933.98 - absdiff 3003.90 percdiff 87.4260 tig 107 read 3305 pos 4219-10745 NOT confused by 3' edge to read 315096 - best edge read 459057 len 5033 erate 0.0189 score 4937.88 - alt edge len 1810 erate 0.0414 score 1735.07 - absdiff 3202.81 percdiff 95.9939 discard region 2775:10088 - no confusion in best edges Annotating repeats in reads for tig 108/90584. Annotated with 139 overlaps. Scan reads to discard spanned repeats. discard region 10909:14538 - contained in read 434851 5457- 22798 thickest edges to the repeat regions: saved region 221:5250 - closest 5' read 385908 ( +221) 0:5213 ( -37) saved region 221:5250 - closest 3' read 470392 ( -158) 379:11459 ( +6209) saved region 17131:24201 - closest 5' read 434851 (+11674) 5457:22798 ( -1403) saved region 17131:24201 - closest 3' read 529009 ( -134) 17265:27595 ( +3394) search for confused edges: tig 108 read 434851 pos 5457-22798 NOT confused by 5' edge to read 60469 - best edge read 529009 len 5528 erate 0.0150 score 5445.08 - alt edge len 1063 erate 0.0188 score 1043.02 - absdiff 4402.06 percdiff 135.6967 tig 108 read 434851 pos 5457-22798 NOT confused by 5' edge to read 60470 - best edge read 529009 len 5528 erate 0.0150 score 5445.08 - alt edge len 1029 erate 0.0156 score 1012.95 - absdiff 4432.13 percdiff 137.2596 tig 108 read 434851 pos 5457-22798 NOT confused by 5' edge to read 60471 - best edge read 529009 len 5528 erate 0.0150 score 5445.08 - alt edge len 993 erate 0.0151 score 978.01 - absdiff 4467.07 percdiff 139.0943 tig 108 read 434851 pos 5457-22798 IS confused by 5' edge to read 232080 - best edge read 529009 len 5528 erate 0.0150 score 5445.08 - alt edge len 4496 erate 0.0113 score 4445.20 - absdiff 999.88 percdiff 20.2196 tig 108 read 434851 pos 5457-22798 IS confused by 5' edge to read 266274 - best edge read 529009 len 5528 erate 0.0150 score 5445.08 - alt edge len 4983 erate 0.0096 score 4935.16 - absdiff 509.92 percdiff 9.8248 tig 108 read 434851 pos 5457-22798 NOT confused by 5' edge to read 327576 - best edge read 529009 len 5528 erate 0.0150 score 5445.08 - alt edge len 862 erate 0.0175 score 846.92 - absdiff 4598.16 percdiff 146.1592 tig 108 read 434851 pos 5457-22798 NOT confused by 5' edge to read 327577 - best edge read 529009 len 5528 erate 0.0150 score 5445.08 - alt edge len 804 erate 0.0175 score 789.93 - absdiff 4655.15 percdiff 149.3229 tig 108 read 434851 pos 5457-22798 IS confused by 5' edge to read 412743 - best edge read 529009 len 5528 erate 0.0150 score 5445.08 - alt edge len 3529 erate 0.0275 score 3431.95 - absdiff 2013.13 percdiff 45.3559 tig 108 read 434851 pos 5457-22798 NOT confused by 5' edge to read 414041 - best edge read 529009 len 5528 erate 0.0150 score 5445.08 - alt edge len 1928 erate 0.0151 score 1898.89 - absdiff 3546.19 percdiff 96.5743 tig 108 read 529009 pos 17265-27595 NOT confused by 5' edge to read 137293 - best edge read 434851 len 5533 erate 0.0150 score 5450.01 - alt edge len 2005 erate 0.0286 score 1947.66 - absdiff 3502.35 percdiff 94.6880 tig 108 read 529009 pos 17265-27595 NOT confused by 5' edge to read 410527 - best edge read 434851 len 5533 erate 0.0150 score 5450.01 - alt edge len 2900 erate 0.0295 score 2814.45 - absdiff 2635.55 percdiff 63.7805 tig 108 read 529009 pos 17265-27595 NOT confused by 5' edge to read 410529 - best edge read 434851 len 5533 erate 0.0150 score 5450.01 - alt edge len 2894 erate 0.0306 score 2805.44 - absdiff 2644.56 percdiff 64.0683 tig 108 read 529009 pos 17265-27595 NOT confused by 5' edge to read 410531 - best edge read 434851 len 5533 erate 0.0150 score 5450.01 - alt edge len 2866 erate 0.0305 score 2778.59 - absdiff 2671.42 percdiff 64.9301 tig 108 read 529009 pos 17265-27595 NOT confused by 5' edge to read 470392 - best edge read 434851 len 5533 erate 0.0150 score 5450.01 - alt edge len 1234 erate 0.0319 score 1194.64 - absdiff 4255.37 percdiff 128.0843 discard region 221:5250 - no confusion in best edges saved region 17131:24201 - 3 best edges are potentially confused break tig 108 into up to 3 pieces: 0 16631 unique (length 16631) 16631 24701 repeat (length 8070) 24701 39636 unique (length 14935) Creating Unitig 90625 Creating Unitig 90626 Creating Unitig 90627 For tig 108 unique region 0 16631 - 0/ 45 reads repeat/unique - unitig 90625 created. For tig 108 repeat region 16631 24701 - 13/ 0 reads repeat/unique - unitig 90627 created. For tig 108 unique region 24701 39636 - 0/ 22 reads repeat/unique - unitig 90626 created. Annotating repeats in reads for tig 109/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 15405:17775 - contained in read 291371 11939- 18318 discard region 21921:23185 - contained in read 20395 20037- 27504 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 113/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5282:7964 - closest read 105931 ( +5282) 0:7965 ( +1) (contained) saved region 5282:7964 - closest read 527362 ( +11) 5271:9912 ( +1948) (contained) saved region 5282:7964 - closest read 527360 ( +9) 5273:12111 ( +4147) (contained) saved region 5282:7964 - closest read 527357 ( +8) 5274:12235 ( +4271) (contained) saved region 5282:7964 - closest read 527356 ( +7) 5275:12207 ( +4243) (contained) saved region 5282:7964 - closest read 527361 ( +2) 5280:12271 ( +4307) (contained) saved region 5282:7964 - closest 5' read 527361 ( +2) 5280:12271 ( +4307) saved region 5282:7964 - closest 3' read 105931 ( +5282) 0:7965 ( +1) search for confused edges: discard region 5282:7964 - no confusion in best edges Annotating repeats in reads for tig 114/90584. Annotated with 452 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:26088 - closest 5' read 181754 ( +0) 0:6456 (-19632) saved region 0:26088 - closest 3' read 287888 (-17723) 17723:26088 ( +0) search for confused edges: tig 114 read 181754 pos 0-6456 IS confused by 3' edge to read 406747 - best edge read 413660 len 2619 erate 0.0287 score 2543.83 - alt edge len 1081 erate 0.0443 score 1033.11 - absdiff 1510.72 percdiff 84.4700 tig 114 read 413660 pos 3837-10287 IS confused by 5' edge to read 406747 - best edge read 192642 len 1781 erate 0.0382 score 1712.97 - alt edge len 1307 erate 0.0362 score 1259.69 - absdiff 453.28 percdiff 30.4966 tig 114 read 192642 pos 8506-19730 NOT confused by 3' edge to read 168710 - best edge read 378631 len 9274 erate 0.0267 score 9026.38 - alt edge len 1291 erate 0.0372 score 1242.97 - absdiff 7783.41 percdiff 151.5851 tig 114 read 192642 pos 8506-19730 NOT confused by 3' edge to read 470524 - best edge read 378631 len 9274 erate 0.0267 score 9026.38 - alt edge len 951 erate 0.0431 score 910.01 - absdiff 8116.37 percdiff 163.3665 tig 114 read 192642 pos 8506-19730 NOT confused by 3' edge to read 502576 - best edge read 378631 len 9274 erate 0.0267 score 9026.38 - alt edge len 906 erate 0.0397 score 870.03 - absdiff 8156.35 percdiff 164.8345 tig 114 read 287888 pos 17723-26088 IS confused by 3' edge to read 470523 - best edge read 378631 len 2212 erate 0.0317 score 2141.88 - alt edge len 1584 erate 0.0354 score 1527.93 - absdiff 613.95 percdiff 33.4597 tig 114 read 287888 pos 17723-26088 IS confused by 3' edge to read 470524 - best edge read 378631 len 2212 erate 0.0317 score 2141.88 - alt edge len 1592 erate 0.0270 score 1549.02 - absdiff 592.86 percdiff 32.1257 tig 114 read 287888 pos 17723-26088 IS confused by 3' edge to read 502576 - best edge read 378631 len 2212 erate 0.0317 score 2141.88 - alt edge len 1545 erate 0.0272 score 1502.98 - absdiff 638.90 percdiff 35.0578 saved region 0:26088 - 5 best edges are potentially confused Annotating repeats in reads for tig 117/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4602:5717 - contained in read 325636 7- 5717 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 121/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 15593:14927 - contained in read 212348 7526- 15588 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 122/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 16446:15899 - contained in read 456282 10003- 18766 discard region 17645:16222 - contained in read 456282 10003- 18766 discard region 17915:19550 - contained in read 153150 16222- 22004 thickest edges to the repeat regions: saved region 4786:9444 - closest 5' read 461445 ( +3475) 1311:8478 ( -966) saved region 4786:9444 - closest 3' read 211607 ( -50) 4836:9914 ( +470) search for confused edges: tig 122 read 422340 pos 4854-9657 NOT confused by 3' edge to read 186508 - best edge read 316821 len 3933 erate 0.0138 score 3878.72 - alt edge len 1122 erate 0.0285 score 1090.02 - absdiff 2788.70 percdiff 112.2497 tig 122 read 422340 pos 4854-9657 NOT confused by 3' edge to read 226436 - best edge read 316821 len 3933 erate 0.0138 score 3878.72 - alt edge len 1236 erate 0.0393 score 1187.43 - absdiff 2691.30 percdiff 106.2463 tig 122 read 422340 pos 4854-9657 NOT confused by 3' edge to read 226437 - best edge read 316821 len 3933 erate 0.0138 score 3878.72 - alt edge len 1395 erate 0.0258 score 1359.01 - absdiff 2519.72 percdiff 96.2140 tig 122 read 422340 pos 4854-9657 NOT confused by 3' edge to read 226438 - best edge read 316821 len 3933 erate 0.0138 score 3878.72 - alt edge len 1407 erate 0.0271 score 1368.87 - absdiff 2509.85 percdiff 95.6573 tig 122 read 422340 pos 4854-9657 NOT confused by 3' edge to read 226439 - best edge read 316821 len 3933 erate 0.0138 score 3878.72 - alt edge len 1405 erate 0.0278 score 1365.94 - absdiff 2512.78 percdiff 95.8225 tig 122 read 422340 pos 4854-9657 NOT confused by 3' edge to read 231845 - best edge read 316821 len 3933 erate 0.0138 score 3878.72 - alt edge len 915 erate 0.0396 score 878.77 - absdiff 2999.96 percdiff 126.1152 tig 122 read 316821 pos 4860-8787 NOT confused by 3' edge to read 169177 - best edge read 422340 len 3922 erate 0.0138 score 3867.88 - alt edge len 1692 erate 0.0231 score 1652.91 - absdiff 2214.96 percdiff 80.2407 tig 122 read 316821 pos 4860-8787 NOT confused by 5' edge to read 186508 - best edge read 316820 len 3918 erate 0.0105 score 3876.86 - alt edge len 1129 erate 0.0231 score 1102.92 - absdiff 2773.94 percdiff 111.4081 tig 122 read 316821 pos 4860-8787 NOT confused by 5' edge to read 226436 - best edge read 316820 len 3918 erate 0.0105 score 3876.86 - alt edge len 1242 erate 0.0375 score 1195.42 - absdiff 2681.44 percdiff 105.7289 tig 122 read 316821 pos 4860-8787 NOT confused by 5' edge to read 226437 - best edge read 316820 len 3918 erate 0.0105 score 3876.86 - alt edge len 1399 erate 0.0250 score 1364.02 - absdiff 2512.84 percdiff 95.8936 tig 122 read 316821 pos 4860-8787 NOT confused by 5' edge to read 226438 - best edge read 316820 len 3918 erate 0.0105 score 3876.86 - alt edge len 1411 erate 0.0263 score 1373.89 - absdiff 2502.97 percdiff 95.3376 tig 122 read 316821 pos 4860-8787 NOT confused by 5' edge to read 226439 - best edge read 316820 len 3918 erate 0.0105 score 3876.86 - alt edge len 1409 erate 0.0270 score 1370.96 - absdiff 2505.90 percdiff 95.5027 tig 122 read 316821 pos 4860-8787 NOT confused by 5' edge to read 231845 - best edge read 316820 len 3918 erate 0.0105 score 3876.86 - alt edge len 922 erate 0.0361 score 888.72 - absdiff 2988.15 percdiff 125.4054 tig 122 read 316821 pos 4860-8787 NOT confused by 3' edge to read 401258 - best edge read 422340 len 3922 erate 0.0138 score 3867.88 - alt edge len 689 erate 0.0088 score 682.94 - absdiff 3184.94 percdiff 139.9723 tig 122 read 316821 pos 4860-8787 NOT confused by 3' edge to read 401261 - best edge read 422340 len 3922 erate 0.0138 score 3867.88 - alt edge len 687 erate 0.0088 score 680.95 - absdiff 3186.92 percdiff 140.1205 tig 122 read 316820 pos 4872-8778 NOT confused by 5' edge to read 169177 - best edge read 316821 len 3905 erate 0.0105 score 3864.00 - alt edge len 1672 erate 0.0293 score 1623.01 - absdiff 2240.99 percdiff 81.6834 tig 122 read 316820 pos 4872-8778 NOT confused by 3' edge to read 186508 - best edge read 461445 len 3606 erate 0.0247 score 3516.93 - alt edge len 1125 erate 0.0276 score 1093.95 - absdiff 2422.98 percdiff 105.0984 tig 122 read 316820 pos 4872-8778 NOT confused by 3' edge to read 226436 - best edge read 461445 len 3606 erate 0.0247 score 3516.93 - alt edge len 1238 erate 0.0383 score 1190.58 - absdiff 2326.35 percdiff 98.8354 tig 122 read 316820 pos 4872-8778 NOT confused by 3' edge to read 226437 - best edge read 461445 len 3606 erate 0.0247 score 3516.93 - alt edge len 1397 erate 0.0265 score 1359.98 - absdiff 2156.95 percdiff 88.4557 tig 122 read 316820 pos 4872-8778 NOT confused by 3' edge to read 226438 - best edge read 461445 len 3606 erate 0.0247 score 3516.93 - alt edge len 1409 erate 0.0277 score 1369.97 - absdiff 2146.96 percdiff 87.8659 tig 122 read 316820 pos 4872-8778 NOT confused by 3' edge to read 226439 - best edge read 461445 len 3606 erate 0.0247 score 3516.93 - alt edge len 1407 erate 0.0278 score 1367.89 - absdiff 2149.05 percdiff 87.9888 tig 122 read 316820 pos 4872-8778 NOT confused by 3' edge to read 231845 - best edge read 461445 len 3606 erate 0.0247 score 3516.93 - alt edge len 919 erate 0.0350 score 886.83 - absdiff 2630.10 percdiff 119.4476 tig 122 read 316820 pos 4872-8778 NOT confused by 5' edge to read 401258 - best edge read 316821 len 3905 erate 0.0105 score 3864.00 - alt edge len 667 erate 0.0241 score 650.93 - absdiff 3213.07 percdiff 142.3312 tig 122 read 316820 pos 4872-8778 NOT confused by 5' edge to read 401261 - best edge read 316821 len 3905 erate 0.0105 score 3864.00 - alt edge len 665 erate 0.0256 score 647.98 - absdiff 3216.02 percdiff 142.5550 discard region 4786:9444 - no confusion in best edges Annotating repeats in reads for tig 123/90584. Annotated with 3651 overlaps. Scan reads to discard spanned repeats. discard region 705:200 - contained in read 286960 0- 1541 thickest edges to the repeat regions: saved region 911:1540 - closest read 286960 ( +911) 0:1541 ( +1) (contained) saved region 911:1540 - closest read 47793 ( +418) 493:7144 ( +5604) (contained) saved region 911:1540 - closest read 47791 ( +414) 497:7094 ( +5554) (contained) saved region 911:1540 - closest read 47794 ( +405) 506:7188 ( +5648) (contained) saved region 911:1540 - closest read 47792 ( +404) 507:7152 ( +5612) (contained) saved region 911:1540 - closest read 47790 ( +402) 509:7165 ( +5625) (contained) saved region 911:1540 - closest read 359139 ( +325) 586:7120 ( +5580) (contained) saved region 911:1540 - closest 5' read 47794 ( +405) 506:7188 ( +5648) saved region 911:1540 - closest 3' read 286960 ( +911) 0:1541 ( +1) saved region 1537:66531 - closest 5' read 47794 ( +1031) 506:7188 (-59343) saved region 1537:66531 - closest 3' read 66146 (-53234) 54771:66531 ( +0) search for confused edges: tig 123 read 115971 pos 5487-18115 IS confused by 5' edge to read 39750 - best edge read 47794 len 1701 erate 0.0383 score 1635.85 - alt edge len 1405 erate 0.0388 score 1350.49 - absdiff 285.37 percdiff 19.1114 tig 123 read 115971 pos 5487-18115 IS confused by 5' edge to read 39751 - best edge read 47794 len 1701 erate 0.0383 score 1635.85 - alt edge len 1404 erate 0.0418 score 1345.31 - absdiff 290.54 percdiff 19.4916 tig 123 read 115971 pos 5487-18115 IS confused by 5' edge to read 269245 - best edge read 47794 len 1701 erate 0.0383 score 1635.85 - alt edge len 830 erate 0.0377 score 798.71 - absdiff 837.14 percdiff 68.7716 tig 123 read 115971 pos 5487-18115 IS confused by 5' edge to read 306595 - best edge read 47794 len 1701 erate 0.0383 score 1635.85 - alt edge len 858 erate 0.0340 score 828.83 - absdiff 807.02 percdiff 65.4871 tig 123 read 115971 pos 5487-18115 IS confused by 5' edge to read 306598 - best edge read 47794 len 1701 erate 0.0383 score 1635.85 - alt edge len 817 erate 0.0306 score 792.00 - absdiff 843.85 percdiff 69.5143 tig 123 read 115971 pos 5487-18115 IS confused by 5' edge to read 438308 - best edge read 47794 len 1701 erate 0.0383 score 1635.85 - alt edge len 678 erate 0.0387 score 651.76 - absdiff 984.09 percdiff 86.0364 tig 123 read 467171 pos 21277-27070 NOT confused by 5' edge to read 80754 - best edge read 467168 len 5787 erate 0.0188 score 5678.20 - alt edge len 1329 erate 0.0403 score 1275.44 - absdiff 4402.76 percdiff 126.6318 tig 123 read 467171 pos 21277-27070 NOT confused by 5' edge to read 103470 - best edge read 467168 len 5787 erate 0.0188 score 5678.20 - alt edge len 1175 erate 0.0350 score 1133.88 - absdiff 4544.33 percdiff 133.4197 tig 123 read 467171 pos 21277-27070 NOT confused by 5' edge to read 103471 - best edge read 467168 len 5787 erate 0.0188 score 5678.20 - alt edge len 3125 erate 0.0420 score 2993.75 - absdiff 2684.45 percdiff 61.9112 tig 123 read 467171 pos 21277-27070 NOT confused by 5' edge to read 317555 - best edge read 467168 len 5787 erate 0.0188 score 5678.20 - alt edge len 3451 erate 0.0358 score 3327.45 - absdiff 2350.75 percdiff 52.2061 tig 123 read 467171 pos 21277-27070 NOT confused by 5' edge to read 438308 - best edge read 467168 len 5787 erate 0.0188 score 5678.20 - alt edge len 1222 erate 0.0365 score 1177.40 - absdiff 4500.81 percdiff 131.3031 tig 123 read 467168 pos 21280-27074 NOT confused by 3' edge to read 103470 - best edge read 467173 len 5793 erate 0.0165 score 5697.42 - alt edge len 3120 erate 0.0420 score 2988.96 - absdiff 2708.46 percdiff 62.3610 tig 123 read 467168 pos 21280-27074 NOT confused by 3' edge to read 317555 - best edge read 467173 len 5793 erate 0.0165 score 5697.42 - alt edge len 3447 erate 0.0395 score 3310.84 - absdiff 2386.57 percdiff 52.9863 tig 123 read 467168 pos 21280-27074 NOT confused by 3' edge to read 438308 - best edge read 467173 len 5793 erate 0.0165 score 5697.42 - alt edge len 1221 erate 0.0438 score 1167.52 - absdiff 4529.90 percdiff 131.9720 tig 123 read 467173 pos 21294-27086 NOT confused by 5' edge to read 317555 - best edge read 467169 len 5791 erate 0.0178 score 5687.92 - alt edge len 3456 erate 0.0412 score 3313.61 - absdiff 2374.31 percdiff 52.7534 tig 123 read 467169 pos 21297-27087 NOT confused by 5' edge to read 80754 - best edge read 500433 len 5015 erate 0.0363 score 4832.96 - alt edge len 1346 erate 0.0376 score 1295.39 - absdiff 3537.57 percdiff 115.4493 tig 123 read 467169 pos 21297-27087 NOT confused by 5' edge to read 103470 - best edge read 500433 len 5015 erate 0.0363 score 4832.96 - alt edge len 1191 erate 0.0354 score 1148.84 - absdiff 3684.12 percdiff 123.1777 tig 123 read 467169 pos 21297-27087 IS confused by 5' edge to read 103471 - best edge read 500433 len 5015 erate 0.0363 score 4832.96 - alt edge len 3136 erate 0.0405 score 3008.99 - absdiff 1823.96 percdiff 46.5181 tig 123 read 467169 pos 21297-27087 IS confused by 5' edge to read 317555 - best edge read 500433 len 5015 erate 0.0363 score 4832.96 - alt edge len 3461 erate 0.0353 score 3338.83 - absdiff 1494.13 percdiff 36.5680 tig 123 read 467169 pos 21297-27087 NOT confused by 5' edge to read 438308 - best edge read 500433 len 5015 erate 0.0363 score 4832.96 - alt edge len 1238 erate 0.0352 score 1194.42 - absdiff 3638.53 percdiff 120.7335 tig 123 read 500433 pos 22065-30368 IS confused by 5' edge to read 46011 - best edge read 467169 len 5022 erate 0.0363 score 4839.70 - alt edge len 3329 erate 0.0380 score 3202.50 - absdiff 1637.20 percdiff 40.7153 tig 123 read 500433 pos 22065-30368 NOT confused by 3' edge to read 117151 - best edge read 25606 len 6436 erate 0.0249 score 6275.74 - alt edge len 710 erate 0.0353 score 684.94 - absdiff 5590.81 percdiff 160.6397 tig 123 read 500433 pos 22065-30368 NOT confused by 3' edge to read 279683 - best edge read 25606 len 6436 erate 0.0249 score 6275.74 - alt edge len 720 erate 0.0420 score 689.76 - absdiff 5585.98 percdiff 160.3899 tig 123 read 500433 pos 22065-30368 NOT confused by 3' edge to read 362407 - best edge read 25606 len 6436 erate 0.0249 score 6275.74 - alt edge len 621 erate 0.0437 score 593.86 - absdiff 5681.88 percdiff 165.4209 tig 123 read 500433 pos 22065-30368 NOT confused by 3' edge to read 362408 - best edge read 25606 len 6436 erate 0.0249 score 6275.74 - alt edge len 623 erate 0.0450 score 594.97 - absdiff 5680.78 percdiff 165.3622 tig 123 read 500433 pos 22065-30368 NOT confused by 5' edge to read 531200 - best edge read 467169 len 5022 erate 0.0363 score 4839.70 - alt edge len 2160 erate 0.0371 score 2079.86 - absdiff 2759.84 percdiff 79.7691 tig 123 read 25606 pos 23941-31323 NOT confused by 5' edge to read 46011 - best edge read 500433 len 6427 erate 0.0249 score 6266.97 - alt edge len 1459 erate 0.0345 score 1408.66 - absdiff 4858.30 percdiff 126.5903 tig 123 read 25606 pos 23941-31323 NOT confused by 5' edge to read 102448 - best edge read 500433 len 6427 erate 0.0249 score 6266.97 - alt edge len 573 erate 0.0332 score 553.98 - absdiff 5712.99 percdiff 167.5132 tig 123 read 25606 pos 23941-31323 NOT confused by 5' edge to read 317555 - best edge read 500433 len 6427 erate 0.0249 score 6266.97 - alt edge len 1517 erate 0.0323 score 1468.00 - absdiff 4798.97 percdiff 124.0850 tig 123 read 421871 pos 27019-34227 IS confused by 3' edge to read 174522 - best edge read 117151 len 757 erate 0.0397 score 726.95 - alt edge len 614 erate 0.0426 score 587.84 - absdiff 139.10 percdiff 21.1598 tig 123 read 421871 pos 27019-34227 IS confused by 3' edge to read 279683 - best edge read 117151 len 757 erate 0.0397 score 726.95 - alt edge len 767 erate 0.0434 score 733.71 - absdiff 6.77 percdiff 0.9263 tig 123 read 117151 pos 33470-45903 NOT confused by 5' edge to read 150725 - best edge read 315303 len 4582 erate 0.0401 score 4398.26 - alt edge len 722 erate 0.0389 score 693.91 - absdiff 3704.35 percdiff 145.4917 tig 123 read 117151 pos 33470-45903 NOT confused by 5' edge to read 439775 - best edge read 315303 len 4582 erate 0.0401 score 4398.26 - alt edge len 829 erate 0.0411 score 794.93 - absdiff 3603.33 percdiff 138.7715 tig 123 read 315303 pos 41321-53716 IS confused by 3' edge to read 98154 - best edge read 117151 len 4547 erate 0.0401 score 4364.67 - alt edge len 4424 erate 0.0390 score 4251.46 - absdiff 113.20 percdiff 2.6277 tig 123 read 315303 pos 41321-53716 NOT confused by 5' edge to read 279683 - best edge read 473608 len 11153 erate 0.0339 score 10774.91 - alt edge len 551 erate 0.0314 score 533.70 - absdiff 10241.21 percdiff 181.1224 tig 123 read 315303 pos 41321-53716 NOT confused by 5' edge to read 281128 - best edge read 473608 len 11153 erate 0.0339 score 10774.91 - alt edge len 566 erate 0.0321 score 547.83 - absdiff 10227.08 percdiff 180.6467 tig 123 read 473608 pos 42563-54807 NOT confused by 3' edge to read 39750 - best edge read 315303 len 11129 erate 0.0339 score 10751.73 - alt edge len 1157 erate 0.0429 score 1107.36 - absdiff 9644.36 percdiff 162.6493 tig 123 read 473608 pos 42563-54807 NOT confused by 3' edge to read 39751 - best edge read 315303 len 11129 erate 0.0339 score 10751.73 - alt edge len 1156 erate 0.0429 score 1106.41 - absdiff 9645.32 percdiff 162.6785 tig 123 read 473608 pos 42563-54807 NOT confused by 3' edge to read 98154 - best edge read 315303 len 11129 erate 0.0339 score 10751.73 - alt edge len 6737 erate 0.0316 score 6524.11 - absdiff 4227.62 percdiff 48.9425 tig 123 read 473608 pos 42563-54807 NOT confused by 3' edge to read 115971 - best edge read 315303 len 11129 erate 0.0339 score 10751.73 - alt edge len 1478 erate 0.0381 score 1421.69 - absdiff 9330.04 percdiff 153.2855 tig 123 read 473608 pos 42563-54807 IS confused by 5' edge to read 279683 - best edge read 115972 len 1801 erate 0.0406 score 1727.88 - alt edge len 1659 erate 0.0405 score 1591.81 - absdiff 136.07 percdiff 8.1977 tig 123 read 473608 pos 42563-54807 NOT confused by 3' edge to read 315621 - best edge read 315303 len 11129 erate 0.0339 score 10751.73 - alt edge len 1555 erate 0.0436 score 1487.20 - absdiff 9264.52 percdiff 151.3944 tig 123 read 115972 pos 53006-65702 NOT confused by 5' edge to read 279683 - best edge read 66146 len 10931 erate 0.0446 score 10443.48 - alt edge len 3436 erate 0.0313 score 3328.45 - absdiff 7115.02 percdiff 103.3265 tig 123 read 66146 pos 54771-66531 NOT confused by 5' edge to read 39750 - best edge read 115972 len 10981 erate 0.0407 score 10534.07 - alt edge len 1397 erate 0.0418 score 1338.61 - absdiff 9195.47 percdiff 154.9013 tig 123 read 66146 pos 54771-66531 NOT confused by 5' edge to read 98154 - best edge read 115972 len 10981 erate 0.0407 score 10534.07 - alt edge len 1662 erate 0.0344 score 1604.83 - absdiff 8929.25 percdiff 147.1179 tig 123 read 66146 pos 54771-66531 NOT confused by 5' edge to read 115971 - best edge read 115972 len 10981 erate 0.0407 score 10534.07 - alt edge len 1718 erate 0.0384 score 1652.03 - absdiff 8882.04 percdiff 145.7733 discard region 911:1540 - no confusion in best edges saved region 1537:66531 - 13 best edges are potentially confused break tig 123 into up to 2 pieces: 0 1037 unique (length 1037) 1037 66531 repeat (length 65494) Creating Unitig 90628 Creating Unitig 90629 For tig 123 unique region 0 1037 - 0/ 9 reads repeat/unique - unitig 90628 created. For tig 123 repeat region 1037 66531 - 246/ 0 reads repeat/unique - unitig 90629 created. Annotating repeats in reads for tig 124/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 12057:12581 - contained in read 19716 8923- 18460 thickest edges to the repeat regions: saved region 21754:27415 - closest 5' read 292664 ( +1244) 20510:26969 ( -446) saved region 21754:27415 - closest 3' read 31059 ( -2082) 23836:30881 ( +3466) saved region 27764:31905 - closest 5' read 31058 ( +3926) 23838:30887 ( -1018) saved region 27764:31905 - closest 3' read 169789 ( -1048) 28812:34572 ( +2667) search for confused edges: tig 124 read 31058 pos 23838-30887 IS confused by 3' edge to read 278022 - best edge read 24059 len 2388 erate 0.0304 score 2315.40 - alt edge len 2353 erate 0.0273 score 2288.76 - absdiff 26.64 percdiff 1.1573 tig 124 read 31058 pos 23838-30887 IS confused by 3' edge to read 415853 - best edge read 24059 len 2388 erate 0.0304 score 2315.40 - alt edge len 829 erate 0.0326 score 801.97 - absdiff 1513.43 percdiff 97.0963 discard region 21754:27415 - no confusion in best edges saved region 27764:31905 - 2 best edges are potentially confused break tig 124 into up to 3 pieces: 0 27264 unique (length 27264) 27264 32405 repeat (length 5141) 32405 36413 unique (length 4008) Creating Unitig 90630 Creating Unitig 90631 Creating Unitig 90632 For tig 124 unique region 0 27264 - 0/ 42 reads repeat/unique - unitig 90630 created. For tig 124 repeat region 27264 32405 - 6/ 0 reads repeat/unique - unitig 90631 created. For tig 124 unique region 32405 36413 - 0/ 10 reads repeat/unique - unitig 90632 created. Annotating repeats in reads for tig 125/90584. Annotated with 1118 overlaps. Scan reads to discard spanned repeats. discard region 577:1787 - contained in read 385566 0- 3696 discard region 30071:31890 - contained in read 331652 21012- 33621 thickest edges to the repeat regions: saved region 2196:15461 - closest 5' read 83385 ( +3) 2193:7508 ( -7953) saved region 2196:15461 - closest 3' read 32199 (-12027) 14223:17562 ( +2101) saved region 15507:28268 - closest 5' read 32194 ( +1282) 14225:17575 (-10693) saved region 15507:28268 - closest 3' read 331651 ( -3808) 19315:29866 ( +1598) search for confused edges: tig 125 read 83385 pos 2193-7508 IS confused by 3' edge to read 196244 - best edge read 362250 len 4863 erate 0.0347 score 4694.25 - alt edge len 4657 erate 0.0315 score 4510.30 - absdiff 183.95 percdiff 3.9969 tig 125 read 83385 pos 2193-7508 NOT confused by 3' edge to read 359257 - best edge read 362250 len 4863 erate 0.0347 score 4694.25 - alt edge len 1390 erate 0.0368 score 1338.85 - absdiff 3355.41 percdiff 111.2332 tig 125 read 83385 pos 2193-7508 NOT confused by 3' edge to read 359259 - best edge read 362250 len 4863 erate 0.0347 score 4694.25 - alt edge len 1424 erate 0.0394 score 1367.89 - absdiff 3326.36 percdiff 109.7419 tig 125 read 362250 pos 2646-9394 IS confused by 5' edge to read 79518 - best edge read 83385 len 4862 erate 0.0347 score 4693.29 - alt edge len 3513 erate 0.0322 score 3399.88 - absdiff 1293.41 percdiff 31.9629 tig 125 read 362250 pos 2646-9394 IS confused by 5' edge to read 331652 - best edge read 83385 len 4862 erate 0.0347 score 4693.29 - alt edge len 3259 erate 0.0314 score 3156.67 - absdiff 1536.62 percdiff 39.1498 tig 125 read 362250 pos 2646-9394 IS confused by 5' edge to read 412559 - best edge read 83385 len 4862 erate 0.0347 score 4693.29 - alt edge len 3145 erate 0.0364 score 3030.52 - absdiff 1662.77 percdiff 43.0556 tig 125 read 362250 pos 2646-9394 NOT confused by 5' edge to read 420836 - best edge read 83385 len 4862 erate 0.0347 score 4693.29 - alt edge len 1012 erate 0.0338 score 977.79 - absdiff 3715.49 percdiff 131.0330 tig 125 read 168252 pos 5667-11308 IS confused by 5' edge to read 412559 - best edge read 362250 len 3727 erate 0.0403 score 3576.80 - alt edge len 1963 erate 0.0379 score 1888.60 - absdiff 1688.20 percdiff 61.7777 tig 125 read 393633 pos 5977-14944 NOT confused by 5' edge to read 53109 - best edge read 168252 len 5331 erate 0.0367 score 5135.35 - alt edge len 1708 erate 0.0284 score 1659.49 - absdiff 3475.86 percdiff 102.3087 tig 125 read 393633 pos 5977-14944 IS confused by 5' edge to read 373511 - best edge read 168252 len 5331 erate 0.0367 score 5135.35 - alt edge len 3695 erate 0.0340 score 3569.37 - absdiff 1565.98 percdiff 35.9801 tig 125 read 393633 pos 5977-14944 IS confused by 5' edge to read 420836 - best edge read 168252 len 5331 erate 0.0367 score 5135.35 - alt edge len 3175 erate 0.0360 score 3060.70 - absdiff 2074.65 percdiff 50.6256 tig 125 read 32199 pos 14223-17562 IS confused by 5' edge to read 209901 - best edge read 393633 len 721 erate 0.0403 score 691.94 - alt edge len 571 erate 0.0403 score 547.99 - absdiff 143.96 percdiff 23.2198 tig 125 read 32199 pos 14223-17562 IS confused by 3' edge to read 502444 - best edge read 79518 len 2028 erate 0.0399 score 1947.08 - alt edge len 1674 erate 0.0352 score 1615.08 - absdiff 332.01 percdiff 18.6408 tig 125 read 32199 pos 14223-17562 IS confused by 3' edge to read 502446 - best edge read 79518 len 2028 erate 0.0399 score 1947.08 - alt edge len 1636 erate 0.0404 score 1569.91 - absdiff 377.18 percdiff 21.4489 tig 125 read 32199 pos 14223-17562 IS confused by 3' edge to read 502447 - best edge read 79518 len 2028 erate 0.0399 score 1947.08 - alt edge len 1637 erate 0.0416 score 1568.90 - absdiff 378.18 percdiff 21.5122 tig 125 read 32199 pos 14223-17562 IS confused by 3' edge to read 502448 - best edge read 79518 len 2028 erate 0.0399 score 1947.08 - alt edge len 1646 erate 0.0425 score 1576.05 - absdiff 371.04 percdiff 21.0630 tig 125 read 79518 pos 15534-24743 IS confused by 5' edge to read 196244 - best edge read 331651 len 5428 erate 0.0437 score 5190.80 - alt edge len 5093 erate 0.0279 score 4950.91 - absdiff 239.89 percdiff 4.7308 tig 125 read 79518 pos 15534-24743 NOT confused by 5' edge to read 209901 - best edge read 331651 len 5428 erate 0.0437 score 5190.80 - alt edge len 875 erate 0.0389 score 840.96 - absdiff 4349.83 percdiff 144.2310 tig 125 read 79518 pos 15534-24743 NOT confused by 5' edge to read 273199 - best edge read 331651 len 5428 erate 0.0437 score 5190.80 - alt edge len 2790 erate 0.0427 score 2670.87 - absdiff 2519.93 percdiff 64.1068 tig 125 read 79518 pos 15534-24743 NOT confused by 5' edge to read 359257 - best edge read 331651 len 5428 erate 0.0437 score 5190.80 - alt edge len 1856 erate 0.0325 score 1795.68 - absdiff 3395.12 percdiff 97.1911 tig 125 read 79518 pos 15534-24743 NOT confused by 5' edge to read 359259 - best edge read 331651 len 5428 erate 0.0437 score 5190.80 - alt edge len 1884 erate 0.0433 score 1802.42 - absdiff 3388.37 percdiff 96.9045 tig 125 read 79518 pos 15534-24743 IS confused by 5' edge to read 362250 - best edge read 331651 len 5428 erate 0.0437 score 5190.80 - alt edge len 3509 erate 0.0322 score 3396.01 - absdiff 1794.79 percdiff 41.8033 tig 125 read 79518 pos 15534-24743 IS confused by 3' edge to read 373511 - best edge read 32199 len 2005 erate 0.0399 score 1925.00 - alt edge len 1790 erate 0.0386 score 1720.91 - absdiff 204.09 percdiff 11.1958 tig 125 read 79518 pos 15534-24743 IS confused by 3' edge to read 420836 - best edge read 32199 len 2005 erate 0.0399 score 1925.00 - alt edge len 1275 erate 0.0392 score 1225.02 - absdiff 699.98 percdiff 44.4429 tig 125 read 79518 pos 15534-24743 IS confused by 3' edge to read 420837 - best edge read 32199 len 2005 erate 0.0399 score 1925.00 - alt edge len 1265 erate 0.0411 score 1213.01 - absdiff 711.99 percdiff 45.3786 tig 125 read 331651 pos 19315-29866 NOT confused by 5' edge to read 362250 - best edge read 79518 len 5433 erate 0.0371 score 5231.44 - alt edge len 1392 erate 0.0367 score 1340.91 - absdiff 3890.52 percdiff 118.3906 tig 125 read 331651 pos 19315-29866 NOT confused by 5' edge to read 373511 - best edge read 79518 len 5433 erate 0.0371 score 5231.44 - alt edge len 1657 erate 0.0350 score 1599.00 - absdiff 3632.43 percdiff 106.3601 tig 125 read 331651 pos 19315-29866 NOT confused by 5' edge to read 420836 - best edge read 79518 len 5433 erate 0.0371 score 5231.44 - alt edge len 1140 erate 0.0351 score 1099.99 - absdiff 4131.45 percdiff 130.5062 tig 125 read 331651 pos 19315-29866 NOT confused by 5' edge to read 420837 - best edge read 79518 len 5433 erate 0.0371 score 5231.44 - alt edge len 1130 erate 0.0390 score 1085.93 - absdiff 4145.51 percdiff 131.2416 saved region 2196:15461 - 8 best edges are potentially confused saved region 15507:28268 - 9 best edges are potentially confused merge extended regions 1696:15961 and 15007:28768 break tig 125 into up to 3 pieces: 0 1696 unique (length 1696) 1696 28768 repeat (length 27072) 28768 33621 unique (length 4853) Creating Unitig 90633 Creating Unitig 90634 Creating Unitig 90635 For tig 125 unique region 0 1696 - 0/ 5 reads repeat/unique - unitig 90633 created. For tig 125 repeat region 1696 28768 - 76/ 0 reads repeat/unique - unitig 90634 created. For tig 125 unique region 28768 33621 - 0/ 13 reads repeat/unique - unitig 90635 created. Annotating repeats in reads for tig 126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 128/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12552:13158 - contained in read 156844 9396- 16147 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 133/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 22311:21227 - contained in read 510578 14074- 22321 discard region 22321:21424 - contained in read 510578 14074- 22321 discard region 24465:25596 - contained in read 90635 21720- 26146 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 134/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2586:9159 - closest read 447236 ( +75) 2511:9504 ( +345) (contained) saved region 2586:9159 - closest read 292748 ( +18) 2568:9617 ( +458) (contained) saved region 2586:9159 - closest 5' read 292748 ( +18) 2568:9617 ( +458) saved region 2586:9159 - closest 3' read 447236 ( +75) 2511:9504 ( +345) saved region 10088:20141 - closest read 495528 ( +0) 10088:20623 ( +482) (contained) saved region 10088:20141 - closest 5' read 495528 ( +0) 10088:20623 ( +482) saved region 10088:20141 - closest 3' read 495528 ( +0) 10088:20623 ( +482) search for confused edges: discard region 2586:9159 - no confusion in best edges discard region 10088:20141 - no confusion in best edges Annotating repeats in reads for tig 135/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 10384:7191 - contained in read 181306 3555- 12925 discard region 11622:8756 - contained in read 181306 3555- 12925 thickest edges to the repeat regions: saved region 3546:6233 - closest read 49362 ( +3546) 0:6242 ( +9) (contained) saved region 3546:6233 - closest read 181308 ( +49) 3497:6385 ( +152) (contained) saved region 3546:6233 - closest 5' read 181308 ( +49) 3497:6385 ( +152) saved region 3546:6233 - closest 3' read 49362 ( +3546) 0:6242 ( +9) search for confused edges: discard region 3546:6233 - no confusion in best edges Annotating repeats in reads for tig 136/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 2356:7533 - contained in read 84377 39- 7533 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 137/90584. Annotated with 309 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3420:25057 - closest 5' read 216366 ( +3354) 66:8055 (-17002) saved region 3420:25057 - closest 3' read 406860 (-11224) 14644:25057 ( +0) search for confused edges: tig 137 read 216369 pos 117-8044 IS confused by 5' edge to read 206579 - best edge read 381353 len 4499 erate 0.0209 score 4404.97 - alt edge len 4490 erate 0.0147 score 4424.00 - absdiff 19.03 percdiff 0.4310 tig 137 read 216369 pos 117-8044 IS confused by 5' edge to read 295383 - best edge read 381353 len 4499 erate 0.0209 score 4404.97 - alt edge len 4492 erate 0.0165 score 4417.88 - absdiff 12.91 percdiff 0.2927 tig 137 read 381353 pos 3545-13461 NOT confused by 5' edge to read 114154 - best edge read 427169 len 4707 erate 0.0207 score 4609.57 - alt edge len 2311 erate 0.0191 score 2266.86 - absdiff 2342.71 percdiff 68.1373 tig 137 read 137606 pos 11019-21776 NOT confused by 5' edge to read 35777 - best edge read 369619 len 9177 erate 0.0174 score 9017.32 - alt edge len 1007 erate 0.0249 score 981.93 - absdiff 8035.39 percdiff 160.7200 tig 137 read 137606 pos 11019-21776 NOT confused by 5' edge to read 66942 - best edge read 369619 len 9177 erate 0.0174 score 9017.32 - alt edge len 2932 erate 0.0267 score 2853.72 - absdiff 6163.60 percdiff 103.8427 tig 137 read 137606 pos 11019-21776 NOT confused by 5' edge to read 82360 - best edge read 369619 len 9177 erate 0.0174 score 9017.32 - alt edge len 1028 erate 0.0204 score 1007.03 - absdiff 8010.29 percdiff 159.8167 tig 137 read 137606 pos 11019-21776 NOT confused by 3' edge to read 206579 - best edge read 427169 len 10210 erate 0.0218 score 9987.42 - alt edge len 4220 erate 0.0251 score 4114.08 - absdiff 5873.34 percdiff 83.3010 tig 137 read 137606 pos 11019-21776 NOT confused by 5' edge to read 243022 - best edge read 369619 len 9177 erate 0.0174 score 9017.32 - alt edge len 1791 erate 0.0303 score 1736.73 - absdiff 7280.59 percdiff 135.4017 tig 137 read 137606 pos 11019-21776 NOT confused by 5' edge to read 243025 - best edge read 369619 len 9177 erate 0.0174 score 9017.32 - alt edge len 1906 erate 0.0257 score 1857.02 - absdiff 7160.30 percdiff 131.6918 tig 137 read 137606 pos 11019-21776 NOT confused by 5' edge to read 343313 - best edge read 369619 len 9177 erate 0.0174 score 9017.32 - alt edge len 1345 erate 0.0134 score 1326.98 - absdiff 7690.34 percdiff 148.6876 tig 137 read 369619 pos 12599-23010 NOT confused by 3' edge to read 35777 - best edge read 198648 len 8954 erate 0.0179 score 8793.72 - alt edge len 2231 erate 0.0313 score 2161.17 - absdiff 6632.55 percdiff 121.0884 tig 137 read 369619 pos 12599-23010 NOT confused by 3' edge to read 66942 - best edge read 198648 len 8954 erate 0.0179 score 8793.72 - alt edge len 4172 erate 0.0295 score 4048.93 - absdiff 4744.80 percdiff 73.8913 tig 137 read 369619 pos 12599-23010 NOT confused by 3' edge to read 82360 - best edge read 198648 len 8954 erate 0.0179 score 8793.72 - alt edge len 2252 erate 0.0333 score 2177.01 - absdiff 6616.71 percdiff 120.6249 tig 137 read 369619 pos 12599-23010 NOT confused by 3' edge to read 177528 - best edge read 198648 len 8954 erate 0.0179 score 8793.72 - alt edge len 557 erate 0.0163 score 547.92 - absdiff 8245.80 percdiff 176.5386 tig 137 read 369619 pos 12599-23010 NOT confused by 3' edge to read 177530 - best edge read 198648 len 8954 erate 0.0179 score 8793.72 - alt edge len 549 erate 0.0165 score 539.94 - absdiff 8253.78 percdiff 176.8605 tig 137 read 369619 pos 12599-23010 NOT confused by 5' edge to read 206579 - best edge read 137606 len 9206 erate 0.0174 score 9045.82 - alt edge len 2648 erate 0.0186 score 2598.75 - absdiff 6447.07 percdiff 110.7310 tig 137 read 369619 pos 12599-23010 NOT confused by 3' edge to read 343313 - best edge read 198648 len 8954 erate 0.0179 score 8793.72 - alt edge len 2572 erate 0.0279 score 2500.24 - absdiff 6293.48 percdiff 111.4486 tig 137 read 198648 pos 14056-22999 NOT confused by 3' edge to read 35777 - best edge read 406860 len 8355 erate 0.0143 score 8235.52 - alt edge len 2225 erate 0.0306 score 2156.91 - absdiff 6078.61 percdiff 116.9814 tig 137 read 198648 pos 14056-22999 NOT confused by 3' edge to read 66942 - best edge read 406860 len 8355 erate 0.0143 score 8235.52 - alt edge len 4147 erate 0.0274 score 4033.37 - absdiff 4202.15 percdiff 68.5009 tig 137 read 198648 pos 14056-22999 NOT confused by 3' edge to read 82360 - best edge read 406860 len 8355 erate 0.0143 score 8235.52 - alt edge len 2246 erate 0.0232 score 2193.89 - absdiff 6041.63 percdiff 115.8575 tig 137 read 198648 pos 14056-22999 NOT confused by 3' edge to read 177528 - best edge read 406860 len 8355 erate 0.0143 score 8235.52 - alt edge len 579 erate 0.0242 score 564.99 - absdiff 7670.54 percdiff 174.3202 tig 137 read 198648 pos 14056-22999 NOT confused by 3' edge to read 177530 - best edge read 406860 len 8355 erate 0.0143 score 8235.52 - alt edge len 571 erate 0.0245 score 557.01 - absdiff 7678.51 percdiff 174.6598 tig 137 read 198648 pos 14056-22999 NOT confused by 5' edge to read 206579 - best edge read 369619 len 8922 erate 0.0179 score 8762.30 - alt edge len 1191 erate 0.0320 score 1152.89 - absdiff 7609.41 percdiff 153.4900 tig 137 read 198648 pos 14056-22999 NOT confused by 3' edge to read 243025 - best edge read 406860 len 8355 erate 0.0143 score 8235.52 - alt edge len 3135 erate 0.0419 score 3003.64 - absdiff 5231.88 percdiff 93.1008 tig 137 read 198648 pos 14056-22999 NOT confused by 3' edge to read 343313 - best edge read 406860 len 8355 erate 0.0143 score 8235.52 - alt edge len 2563 erate 0.0265 score 2495.08 - absdiff 5740.44 percdiff 106.9920 tig 137 read 406860 pos 14644-25057 NOT confused by 5' edge to read 206579 - best edge read 198648 len 8373 erate 0.0143 score 8253.27 - alt edge len 610 erate 0.0266 score 593.77 - absdiff 7659.49 percdiff 173.1538 saved region 3420:25057 - 2 best edges are potentially confused break tig 137 into up to 2 pieces: 0 2920 unique (length 2920) 2920 25057 repeat (length 22137) Creating Unitig 90636 Creating Unitig 90637 For tig 137 unique region 0 2920 - 0/ 6 reads repeat/unique - unitig 90636 created. For tig 137 repeat region 2920 25057 - 110/ 0 reads repeat/unique - unitig 90637 created. Annotating repeats in reads for tig 138/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7616:13232 - closest read 109178 ( +13) 7603:13344 ( +112) (contained) saved region 7616:13232 - closest 5' read 109178 ( +13) 7603:13344 ( +112) saved region 7616:13232 - closest 3' read 109178 ( +13) 7603:13344 ( +112) search for confused edges: discard region 7616:13232 - no confusion in best edges Annotating repeats in reads for tig 139/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13944:19436 - closest read 65929 ( +2521) 11423:19436 ( +0) (contained) saved region 13944:19436 - closest read 65932 ( +2366) 11578:19436 ( +0) (contained) saved region 13944:19436 - closest 5' read 65929 ( +2521) 11423:19436 ( +0) saved region 13944:19436 - closest 3' read 65929 ( +2521) 11423:19436 ( +0) search for confused edges: discard region 13944:19436 - no confusion in best edges Annotating repeats in reads for tig 143/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:1948 - contained in read 402870 0- 4356 discard region 6776:8794 - contained in read 194778 5026- 10049 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 146/90584. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 2087:4320 - contained in read 416379 0- 6143 discard region 15589:17686 - contained in read 42782 10728- 21732 thickest edges to the repeat regions: saved region 4421:8660 - closest 5' read 201090 ( +2522) 1899:8657 ( -3) saved region 4421:8660 - closest 3' read 7780 ( -2586) 7007:13273 ( +4613) saved region 25109:30926 - closest 5' read 458006 ( +4008) 21101:25926 ( -5000) saved region 25109:30926 - closest 3' read 519733 ( -10) 25119:30953 ( +27) search for confused edges: tig 146 read 201090 pos 1899-8657 IS confused by 5' edge to read 113056 - best edge read 7778 len 1646 erate 0.0293 score 1597.77 - alt edge len 542 erate 0.0372 score 521.84 - absdiff 1075.93 percdiff 101.5219 tig 146 read 201090 pos 1899-8657 IS confused by 5' edge to read 113059 - best edge read 7778 len 1646 erate 0.0293 score 1597.77 - alt edge len 735 erate 0.0165 score 722.87 - absdiff 874.90 percdiff 75.4014 tig 146 read 201090 pos 1899-8657 IS confused by 5' edge to read 328755 - best edge read 7778 len 1646 erate 0.0293 score 1597.77 - alt edge len 698 erate 0.0072 score 692.97 - absdiff 904.80 percdiff 78.9959 tig 146 read 7778 pos 7011-13216 IS confused by 3' edge to read 387705 - best edge read 201090 len 1638 erate 0.0293 score 1590.01 - alt edge len 1464 erate 0.0370 score 1409.83 - absdiff 180.17 percdiff 12.0123 saved region 4421:8660 - 4 best edges are potentially confused discard region 25109:30926 - no confusion in best edges break tig 146 into up to 3 pieces: 0 3921 unique (length 3921) 3921 9160 repeat (length 5239) 9160 37347 unique (length 28187) Creating Unitig 90638 Creating Unitig 90639 Creating Unitig 90640 For tig 146 unique region 0 3921 - 0/ 13 reads repeat/unique - unitig 90638 created. For tig 146 repeat region 3921 9160 - 5/ 0 reads repeat/unique - unitig 90639 created. For tig 146 unique region 9160 37347 - 0/ 33 reads repeat/unique - unitig 90640 created. Annotating repeats in reads for tig 147/90584. Annotated with 115 overlaps. Scan reads to discard spanned repeats. discard region 0:661 - contained in read 438308 0- 6106 discard region 8450:12228 - contained in read 317555 4565- 12228 thickest edges to the repeat regions: saved region 4482:7063 - closest 5' read 438307 ( +4474) 8:6162 ( -901) saved region 4482:7063 - closest 3' read 317555 ( -83) 4565:12228 ( +5165) search for confused edges: tig 147 read 438308 pos 0-6106 IS confused by 3' edge to read 46011 - best edge read 317555 len 1541 erate 0.0370 score 1483.98 - alt edge len 1483 erate 0.0358 score 1429.91 - absdiff 54.07 percdiff 3.7115 tig 147 read 438308 pos 0-6106 IS confused by 3' edge to read 102448 - best edge read 317555 len 1541 erate 0.0370 score 1483.98 - alt edge len 598 erate 0.0251 score 582.99 - absdiff 900.99 percdiff 87.1799 tig 147 read 438308 pos 0-6106 IS confused by 3' edge to read 467168 - best edge read 317555 len 1541 erate 0.0370 score 1483.98 - alt edge len 1210 erate 0.0438 score 1157.00 - absdiff 326.98 percdiff 24.7620 tig 147 read 438308 pos 0-6106 IS confused by 3' edge to read 467169 - best edge read 317555 len 1541 erate 0.0370 score 1483.98 - alt edge len 1222 erate 0.0352 score 1178.99 - absdiff 305.00 percdiff 22.9066 tig 147 read 438308 pos 0-6106 IS confused by 3' edge to read 467171 - best edge read 317555 len 1541 erate 0.0370 score 1483.98 - alt edge len 1207 erate 0.0365 score 1162.94 - absdiff 321.04 percdiff 24.2574 saved region 4482:7063 - 5 best edges are potentially confused break tig 147 into up to 3 pieces: 0 3982 unique (length 3982) 3982 7563 repeat (length 3581) 7563 12228 unique (length 4665) Creating Unitig 90641 Creating Unitig 90642 For tig 147 unique region 0 3982 - 0/ 3 reads repeat/unique - unitig 90641 created. For tig 147 repeat region 3982 7563 - 0/ 0 repeat/unique reads - no new unitig created. For tig 147 unique region 7563 12228 - 0/ 4 reads repeat/unique - unitig 90642 created. Annotating repeats in reads for tig 150/90584. Annotated with 71 overlaps. Scan reads to discard spanned repeats. discard region 0:3484 - contained in read 104256 0- 6331 thickest edges to the repeat regions: saved region 4798:6552 - closest 5' read 420437 ( +4129) 669:6496 ( -56) saved region 4798:6552 - closest 3' read 462263 ( -2) 4800:12335 ( +5783) search for confused edges: tig 150 read 462264 pos 4805-12346 IS confused by 5' edge to read 320452 - best edge read 420437 len 1691 erate 0.0341 score 1633.34 - alt edge len 1738 erate 0.0081 score 1723.92 - absdiff 90.59 percdiff 5.3964 saved region 4798:6552 - 1 best edges are potentially confused break tig 150 into up to 3 pieces: 0 4298 unique (length 4298) 4298 7052 repeat (length 2754) 7052 15754 unique (length 8702) Creating Unitig 90643 Creating Unitig 90644 For tig 150 unique region 0 4298 - 0/ 5 reads repeat/unique - unitig 90643 created. For tig 150 repeat region 4298 7052 - 0/ 0 repeat/unique reads - no new unitig created. For tig 150 unique region 7052 15754 - 0/ 10 reads repeat/unique - unitig 90644 created. Annotating repeats in reads for tig 151/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 15366:16161 - contained in read 412716 14717- 20130 discard region 20865:16942 - contained in read 412716 14717- 20130 discard region 21002:22619 - contained in read 450232 15381- 25775 discard region 28903:30623 - contained in read 519710 27742- 35753 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 156/90584. Annotated with 140 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4439:6524 - closest read 405436 ( +3) 4436:6636 ( +112) (contained) saved region 4439:6524 - closest 5' read 405436 ( +3) 4436:6636 ( +112) saved region 4439:6524 - closest 3' read 405436 ( +3) 4436:6636 ( +112) saved region 8178:13120 - closest 5' read 128003 ( +2211) 5967:12707 ( -413) saved region 8178:13120 - closest 3' read 156287 ( -423) 8601:13309 ( +189) saved region 15495:22106 - closest 5' read 242352 ( +399) 15096:19160 ( -2946) saved region 15495:22106 - closest 3' read 319133 ( -3255) 18750:24362 ( +2256) search for confused edges: tig 156 read 40443 pos 0-6221 IS confused by 3' edge to read 50593 - best edge read 481344 len 1598 erate 0.0348 score 1542.39 - alt edge len 501 erate 0.0419 score 480.01 - absdiff 1062.38 percdiff 105.0616 tig 156 read 40443 pos 0-6221 IS confused by 3' edge to read 156287 - best edge read 481344 len 1598 erate 0.0348 score 1542.39 - alt edge len 538 erate 0.0204 score 527.02 - absdiff 1015.36 percdiff 98.1306 tig 156 read 40443 pos 0-6221 IS confused by 3' edge to read 319134 - best edge read 481344 len 1598 erate 0.0348 score 1542.39 - alt edge len 880 erate 0.0148 score 866.98 - absdiff 675.41 percdiff 56.0657 tig 156 read 156287 pos 8601-13309 NOT confused by 3' edge to read 40443 - best edge read 128003 len 4103 erate 0.0284 score 3986.47 - alt edge len 543 erate 0.0204 score 531.92 - absdiff 3454.55 percdiff 152.9105 tig 156 read 156287 pos 8601-13309 IS confused by 3' edge to read 118134 - best edge read 128003 len 4103 erate 0.0284 score 3986.47 - alt edge len 2322 erate 0.0216 score 2271.84 - absdiff 1714.63 percdiff 54.7952 tig 156 read 242352 pos 15096-19160 IS confused by 5' edge to read 481339 - best edge read 118134 len 2617 erate 0.0346 score 2526.45 - alt edge len 988 erate 0.0304 score 957.96 - absdiff 1568.49 percdiff 90.0287 tig 156 read 242352 pos 15096-19160 IS confused by 5' edge to read 481340 - best edge read 118134 len 2617 erate 0.0346 score 2526.45 - alt edge len 956 erate 0.0301 score 927.22 - absdiff 1599.23 percdiff 92.6102 tig 156 read 242352 pos 15096-19160 IS confused by 5' edge to read 481342 - best edge read 118134 len 2617 erate 0.0346 score 2526.45 - alt edge len 938 erate 0.0206 score 918.68 - absdiff 1607.77 percdiff 93.3361 tig 156 read 118134 pos 16543-21483 IS confused by 5' edge to read 50593 - best edge read 319134 len 2666 erate 0.0200 score 2612.68 - alt edge len 2287 erate 0.0299 score 2218.62 - absdiff 394.06 percdiff 16.3129 tig 156 read 118134 pos 16543-21483 IS confused by 5' edge to read 100607 - best edge read 319134 len 2666 erate 0.0200 score 2612.68 - alt edge len 785 erate 0.0234 score 766.63 - absdiff 1846.05 percdiff 109.2559 tig 156 read 118134 pos 16543-21483 IS confused by 5' edge to read 156287 - best edge read 319134 len 2666 erate 0.0200 score 2612.68 - alt edge len 2324 erate 0.0216 score 2273.80 - absdiff 338.88 percdiff 13.8700 tig 156 read 118134 pos 16543-21483 IS confused by 3' edge to read 177905 - best edge read 242352 len 2547 erate 0.0346 score 2458.87 - alt edge len 1154 erate 0.0339 score 1114.88 - absdiff 1343.99 percdiff 75.2147 saved region 4439:6524 - 3 best edges are potentially confused saved region 8178:13120 - 1 best edges are potentially confused saved region 15495:22106 - 7 best edges are potentially confused break tig 156 into up to 7 pieces: 0 3939 unique (length 3939) 3939 7024 repeat (length 3085) 7024 7678 unique (length 654) 7678 13620 repeat (length 5942) 13620 14995 unique (length 1375) 14995 22606 repeat (length 7611) 22606 30284 unique (length 7678) Creating Unitig 90645 Creating Unitig 90646 Creating Unitig 90647 Creating Unitig 90648 Creating Unitig 90649 Creating Unitig 90650 Creating Unitig 90651 For tig 156 unique region 0 3939 - 0/ 7 reads repeat/unique - unitig 90645 created. For tig 156 repeat region 3939 7024 - 3/ 0 reads repeat/unique - unitig 90646 created. For tig 156 unique region 7024 7678 - 0/ 8 reads repeat/unique - unitig 90647 created. For tig 156 repeat region 7678 13620 - 9/ 0 reads repeat/unique - unitig 90648 created. For tig 156 unique region 13620 14995 - 0/ 7 reads repeat/unique - unitig 90649 created. For tig 156 repeat region 14995 22606 - 10/ 0 reads repeat/unique - unitig 90650 created. For tig 156 unique region 22606 30284 - 0/ 8 reads repeat/unique - unitig 90651 created. Annotating repeats in reads for tig 158/90584. Annotated with 116 overlaps. Scan reads to discard spanned repeats. discard region 11890:16295 - contained in read 64080 10969- 16295 thickest edges to the repeat regions: saved region 4482:10143 - closest read 117130 ( +433) 4049:10932 ( +789) (contained) saved region 4482:10143 - closest read 117129 ( +269) 4213:11873 ( +1730) (contained) saved region 4482:10143 - closest 5' read 117129 ( +269) 4213:11873 ( +1730) saved region 4482:10143 - closest 3' read 117130 ( +433) 4049:10932 ( +789) search for confused edges: discard region 4482:10143 - no confusion in best edges Annotating repeats in reads for tig 162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 168/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19798:21656 - closest read 93427 ( +2582) 17216:22140 ( +484) (contained) saved region 19798:21656 - closest 5' read 93427 ( +2582) 17216:22140 ( +484) saved region 19798:21656 - closest 3' read 93427 ( +2582) 17216:22140 ( +484) search for confused edges: discard region 19798:21656 - no confusion in best edges Annotating repeats in reads for tig 169/90584. Annotated with 947 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9864:23584 - closest 5' read 360372 ( +271) 9593:19057 ( -4527) saved region 9864:23584 - closest 3' read 88235 ( -219) 10083:23584 ( +0) search for confused edges: tig 169 read 320529 pos 9576-14831 NOT confused by 5' edge to read 234755 - best edge read 453183 len 4889 erate 0.0360 score 4713.00 - alt edge len 944 erate 0.0265 score 918.98 - absdiff 3794.01 percdiff 134.7310 tig 169 read 320529 pos 9576-14831 IS confused by 5' edge to read 250357 - best edge read 453183 len 4889 erate 0.0360 score 4713.00 - alt edge len 3740 erate 0.0414 score 3585.16 - absdiff 1127.83 percdiff 27.1827 tig 169 read 320529 pos 9576-14831 IS confused by 5' edge to read 250359 - best edge read 453183 len 4889 erate 0.0360 score 4713.00 - alt edge len 3371 erate 0.0361 score 3249.31 - absdiff 1463.69 percdiff 36.7655 tig 169 read 320529 pos 9576-14831 IS confused by 5' edge to read 516703 - best edge read 453183 len 4889 erate 0.0360 score 4713.00 - alt edge len 4351 erate 0.0387 score 4182.62 - absdiff 530.38 percdiff 11.9245 tig 169 read 453183 pos 9942-21996 NOT confused by 5' edge to read 234755 - best edge read 31898 len 11949 erate 0.0326 score 11559.46 - alt edge len 8132 erate 0.0380 score 7822.98 - absdiff 3736.48 percdiff 38.5553 tig 169 read 453183 pos 9942-21996 NOT confused by 5' edge to read 342471 - best edge read 31898 len 11949 erate 0.0326 score 11559.46 - alt edge len 601 erate 0.0349 score 580.03 - absdiff 10979.44 percdiff 180.8880 tig 169 read 453183 pos 9942-21996 IS confused by 5' edge to read 343169 - best edge read 31898 len 11949 erate 0.0326 score 11559.46 - alt edge len 11791 erate 0.0272 score 11470.28 - absdiff 89.18 percdiff 0.7745 tig 169 read 453183 pos 9942-21996 NOT confused by 5' edge to read 388370 - best edge read 31898 len 11949 erate 0.0326 score 11559.46 - alt edge len 5089 erate 0.0322 score 4925.13 - absdiff 6634.33 percdiff 80.4912 tig 169 read 453183 pos 9942-21996 IS confused by 5' edge to read 456649 - best edge read 31898 len 11949 erate 0.0326 score 11559.46 - alt edge len 11805 erate 0.0340 score 11403.63 - absdiff 155.83 percdiff 1.3572 tig 169 read 31898 pos 10047-23483 NOT confused by 5' edge to read 86142 - best edge read 453183 len 11936 erate 0.0326 score 11546.89 - alt edge len 4888 erate 0.0329 score 4727.18 - absdiff 6819.70 percdiff 83.8106 tig 169 read 31898 pos 10047-23483 NOT confused by 3' edge to read 141479 - best edge read 88235 len 13400 erate 0.0341 score 12943.06 - alt edge len 8884 erate 0.0406 score 8523.31 - absdiff 4419.75 percdiff 41.1784 tig 169 read 31898 pos 10047-23483 NOT confused by 3' edge to read 234755 - best edge read 88235 len 13400 erate 0.0341 score 12943.06 - alt edge len 9584 erate 0.0322 score 9275.40 - absdiff 3667.66 percdiff 33.0146 tig 169 read 31898 pos 10047-23483 NOT confused by 3' edge to read 292307 - best edge read 88235 len 13400 erate 0.0341 score 12943.06 - alt edge len 2165 erate 0.0305 score 2098.97 - absdiff 10844.09 percdiff 144.1839 tig 169 read 31898 pos 10047-23483 NOT confused by 3' edge to read 342471 - best edge read 88235 len 13400 erate 0.0341 score 12943.06 - alt edge len 2103 erate 0.0349 score 2029.61 - absdiff 10913.45 percdiff 145.7784 tig 169 read 31898 pos 10047-23483 NOT confused by 5' edge to read 343897 - best edge read 453183 len 11936 erate 0.0326 score 11546.89 - alt edge len 4195 erate 0.0422 score 4017.97 - absdiff 7528.92 percdiff 96.7425 tig 169 read 31898 pos 10047-23483 NOT confused by 3' edge to read 388370 - best edge read 88235 len 13400 erate 0.0341 score 12943.06 - alt edge len 6598 erate 0.0329 score 6380.93 - absdiff 6562.13 percdiff 67.9170 tig 169 read 31898 pos 10047-23483 IS confused by 3' edge to read 456649 - best edge read 88235 len 13400 erate 0.0341 score 12943.06 - alt edge len 13266 erate 0.0293 score 12877.31 - absdiff 65.75 percdiff 0.5093 tig 169 read 31898 pos 10047-23483 NOT confused by 5' edge to read 458597 - best edge read 453183 len 11936 erate 0.0326 score 11546.89 - alt edge len 9584 erate 0.0295 score 9301.27 - absdiff 2245.61 percdiff 21.5426 tig 169 read 31898 pos 10047-23483 NOT confused by 5' edge to read 509751 - best edge read 453183 len 11936 erate 0.0326 score 11546.89 - alt edge len 4283 erate 0.0416 score 4104.83 - absdiff 7442.06 percdiff 95.0958 tig 169 read 31898 pos 10047-23483 NOT confused by 5' edge to read 520232 - best edge read 453183 len 11936 erate 0.0326 score 11546.89 - alt edge len 4653 erate 0.0348 score 4491.08 - absdiff 7055.81 percdiff 87.9889 tig 169 read 31898 pos 10047-23483 NOT confused by 5' edge to read 520235 - best edge read 453183 len 11936 erate 0.0326 score 11546.89 - alt edge len 4661 erate 0.0393 score 4477.82 - absdiff 7069.06 percdiff 88.2270 tig 169 read 88235 pos 10083-23584 NOT confused by 5' edge to read 86142 - best edge read 31898 len 13430 erate 0.0341 score 12972.04 - alt edge len 4862 erate 0.0402 score 4666.55 - absdiff 8305.49 percdiff 94.1741 tig 169 read 88235 pos 10083-23584 NOT confused by 5' edge to read 458597 - best edge read 31898 len 13430 erate 0.0341 score 12972.04 - alt edge len 9595 erate 0.0288 score 9318.66 - absdiff 3653.37 percdiff 32.7793 tig 169 read 88235 pos 10083-23584 NOT confused by 5' edge to read 476130 - best edge read 31898 len 13430 erate 0.0341 score 12972.04 - alt edge len 8810 erate 0.0352 score 8499.89 - absdiff 4472.15 percdiff 41.6558 tig 169 read 88235 pos 10083-23584 NOT confused by 5' edge to read 476131 - best edge read 31898 len 13430 erate 0.0341 score 12972.04 - alt edge len 9743 erate 0.0302 score 9448.76 - absdiff 3523.28 percdiff 31.4286 tig 169 read 88235 pos 10083-23584 NOT confused by 5' edge to read 481992 - best edge read 31898 len 13430 erate 0.0341 score 12972.04 - alt edge len 5407 erate 0.0373 score 5205.32 - absdiff 7766.72 percdiff 85.4549 tig 169 read 88235 pos 10083-23584 NOT confused by 5' edge to read 481993 - best edge read 31898 len 13430 erate 0.0341 score 12972.04 - alt edge len 5401 erate 0.0367 score 5202.78 - absdiff 7769.25 percdiff 85.4947 tig 169 read 88235 pos 10083-23584 NOT confused by 5' edge to read 520232 - best edge read 31898 len 13430 erate 0.0341 score 12972.04 - alt edge len 4622 erate 0.0318 score 4475.02 - absdiff 8497.02 percdiff 97.4034 tig 169 read 88235 pos 10083-23584 NOT confused by 5' edge to read 520235 - best edge read 31898 len 13430 erate 0.0341 score 12972.04 - alt edge len 4635 erate 0.0328 score 4482.97 - absdiff 8489.07 percdiff 97.2680 tig 169 read 335039 pos 10103-23565 NOT confused by 3' edge to read 86142 - best edge read 31898 len 13390 erate 0.0308 score 12977.59 - alt edge len 4788 erate 0.0311 score 4639.09 - absdiff 8338.49 percdiff 94.6659 tig 169 read 335039 pos 10103-23565 NOT confused by 3' edge to read 175365 - best edge read 31898 len 13390 erate 0.0308 score 12977.59 - alt edge len 2815 erate 0.0409 score 2699.87 - absdiff 10277.72 percdiff 131.1147 tig 169 read 335039 pos 10103-23565 NOT confused by 5' edge to read 217781 - best edge read 148153 len 13449 erate 0.0418 score 12886.83 - alt edge len 4305 erate 0.0435 score 4117.73 - absdiff 8769.10 percdiff 103.1382 tig 169 read 335039 pos 10103-23565 NOT confused by 5' edge to read 226922 - best edge read 148153 len 13449 erate 0.0418 score 12886.83 - alt edge len 1483 erate 0.0341 score 1432.43 - absdiff 11454.40 percdiff 159.9859 tig 169 read 335039 pos 10103-23565 NOT confused by 5' edge to read 226923 - best edge read 148153 len 13449 erate 0.0418 score 12886.83 - alt edge len 1475 erate 0.0364 score 1421.31 - absdiff 11465.52 percdiff 160.2657 tig 169 read 335039 pos 10103-23565 NOT confused by 5' edge to read 226924 - best edge read 148153 len 13449 erate 0.0418 score 12886.83 - alt edge len 1461 erate 0.0284 score 1419.51 - absdiff 11467.32 percdiff 160.3111 tig 169 read 335039 pos 10103-23565 NOT confused by 5' edge to read 234755 - best edge read 148153 len 13449 erate 0.0418 score 12886.83 - alt edge len 9693 erate 0.0347 score 9356.65 - absdiff 3530.18 percdiff 31.7412 tig 169 read 335039 pos 10103-23565 NOT confused by 5' edge to read 342471 - best edge read 148153 len 13449 erate 0.0418 score 12886.83 - alt edge len 2160 erate 0.0421 score 2069.06 - absdiff 10817.77 percdiff 144.6623 tig 169 read 335039 pos 10103-23565 IS confused by 5' edge to read 343169 - best edge read 148153 len 13449 erate 0.0418 score 12886.83 - alt edge len 13367 erate 0.0290 score 12979.36 - absdiff 92.53 percdiff 0.7154 tig 169 read 335039 pos 10103-23565 NOT confused by 3' edge to read 343897 - best edge read 31898 len 13390 erate 0.0308 score 12977.59 - alt edge len 4108 erate 0.0429 score 3931.77 - absdiff 9045.82 percdiff 106.9919 tig 169 read 335039 pos 10103-23565 NOT confused by 5' edge to read 388370 - best edge read 148153 len 13449 erate 0.0418 score 12886.83 - alt edge len 6681 erate 0.0280 score 6493.93 - absdiff 6392.90 percdiff 65.9716 tig 169 read 335039 pos 10103-23565 IS confused by 5' edge to read 456649 - best edge read 148153 len 13449 erate 0.0418 score 12886.83 - alt edge len 13388 erate 0.0370 score 12892.64 - absdiff 5.81 percdiff 0.0451 tig 169 read 335039 pos 10103-23565 NOT confused by 3' edge to read 458597 - best edge read 31898 len 13390 erate 0.0308 score 12977.59 - alt edge len 9512 erate 0.0337 score 9191.45 - absdiff 3786.14 percdiff 34.1570 tig 169 read 335039 pos 10103-23565 NOT confused by 3' edge to read 476131 - best edge read 31898 len 13390 erate 0.0308 score 12977.59 - alt edge len 9660 erate 0.0359 score 9313.21 - absdiff 3664.38 percdiff 32.8780 tig 169 read 335039 pos 10103-23565 NOT confused by 3' edge to read 520232 - best edge read 31898 len 13390 erate 0.0308 score 12977.59 - alt edge len 4549 erate 0.0347 score 4391.15 - absdiff 8586.44 percdiff 98.8723 tig 169 read 335039 pos 10103-23565 NOT confused by 3' edge to read 520235 - best edge read 31898 len 13390 erate 0.0308 score 12977.59 - alt edge len 4562 erate 0.0386 score 4385.91 - absdiff 8591.68 percdiff 98.9626 tig 169 read 148153 pos 10142-23561 NOT confused by 5' edge to read 86142 - best edge read 335039 len 13408 erate 0.0418 score 12847.55 - alt edge len 4807 erate 0.0431 score 4599.82 - absdiff 8247.73 percdiff 94.5441 tig 169 read 148153 pos 10142-23561 NOT confused by 5' edge to read 458597 - best edge read 335039 len 13408 erate 0.0418 score 12847.55 - alt edge len 9501 erate 0.0275 score 9239.72 - absdiff 3607.82 percdiff 32.6688 tig 169 read 148153 pos 10142-23561 NOT confused by 5' edge to read 520232 - best edge read 335039 len 13408 erate 0.0418 score 12847.55 - alt edge len 4568 erate 0.0340 score 4412.69 - absdiff 8434.86 percdiff 97.7375 tig 169 read 148153 pos 10142-23561 NOT confused by 5' edge to read 520235 - best edge read 335039 len 13408 erate 0.0418 score 12847.55 - alt edge len 4581 erate 0.0372 score 4410.59 - absdiff 8436.96 percdiff 97.7737 saved region 9864:23584 - 8 best edges are potentially confused break tig 169 into up to 2 pieces: 0 9364 unique (length 9364) 9364 23584 repeat (length 14220) Creating Unitig 90652 Creating Unitig 90653 For tig 169 unique region 0 9364 - 0/ 7 reads repeat/unique - unitig 90652 created. For tig 169 repeat region 9364 23584 - 373/ 0 reads repeat/unique - unitig 90653 created. Annotating repeats in reads for tig 171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 173/90584. Annotated with 86 overlaps. Scan reads to discard spanned repeats. discard region 4220:5378 - contained in read 309447 450- 7681 thickest edges to the repeat regions: saved region 6906:9579 - closest 5' read 212213 ( +5415) 1491:7700 ( -1879) saved region 6906:9579 - closest 3' read 422730 ( -5) 6911:9584 ( +5) saved region 20177:24059 - closest 5' read 361315 ( +1347) 18830:22423 ( -1636) saved region 20177:24059 - closest 3' read 140653 ( -24) 20201:24248 ( +189) search for confused edges: discard region 6906:9579 - no confusion in best edges discard region 20177:24059 - no confusion in best edges Annotating repeats in reads for tig 174/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4659:6030 - closest 5' read 222617 ( +4636) 23:6017 ( -13) saved region 4659:6030 - closest 3' read 27997 ( -189) 4848:11909 ( +5879) search for confused edges: tig 174 read 27993 pos 4871-11890 IS confused by 5' edge to read 340095 - best edge read 222617 len 1146 erate 0.0411 score 1098.90 - alt edge len 1126 erate 0.0375 score 1083.78 - absdiff 15.12 percdiff 1.3859 saved region 4659:6030 - 1 best edges are potentially confused break tig 174 into up to 3 pieces: 0 4159 unique (length 4159) 4159 6530 repeat (length 2371) 6530 25531 unique (length 19001) Creating Unitig 90654 Creating Unitig 90655 For tig 174 unique region 0 4159 - 0/ 2 reads repeat/unique - unitig 90654 created. For tig 174 repeat region 4159 6530 - 0/ 0 repeat/unique reads - no new unitig created. For tig 174 unique region 6530 25531 - 0/ 33 reads repeat/unique - unitig 90655 created. Annotating repeats in reads for tig 177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 179/90584. Annotated with 104 overlaps. Scan reads to discard spanned repeats. discard region 1573:3639 - contained in read 412811 0- 6489 discard region 10737:11894 - contained in read 88987 5209- 13864 discard region 12177:14562 - contained in read 530896 10737- 17607 discard region 15813:17094 - contained in read 530896 10737- 17607 thickest edges to the repeat regions: saved region 5209:7233 - closest read 88987 ( +0) 5209:13864 ( +6631) (contained) saved region 5209:7233 - closest 5' read 88987 ( +0) 5209:13864 ( +6631) saved region 5209:7233 - closest 3' read 88987 ( +0) 5209:13864 ( +6631) search for confused edges: discard region 5209:7233 - no confusion in best edges Annotating repeats in reads for tig 180/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 4133:5402 - contained in read 112244 0- 7966 discard region 9733:12109 - contained in read 184379 7663- 19280 discard region 15587:18444 - contained in read 184379 7663- 19280 thickest edges to the repeat regions: saved region 21772:28961 - closest 5' read 529553 ( +2423) 19349:27575 ( -1386) saved region 21772:28961 - closest 3' read 80436 ( -733) 22505:30218 ( +1257) search for confused edges: discard region 21772:28961 - no confusion in best edges Annotating repeats in reads for tig 181/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 5121:12111 - contained in read 317778 1745- 12111 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 182/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 0:4560 - contained in read 511799 0- 7493 discard region 7493:6432 - contained in read 511799 0- 7493 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 183/90584. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 9277:10406 - contained in read 310312 7277- 14338 discard region 11864:14409 - contained in read 356248 9021- 16240 thickest edges to the repeat regions: saved region 16473:21856 - closest read 455918 ( +4) 16469:21883 ( +27) (contained) saved region 16473:21856 - closest 5' read 455918 ( +4) 16469:21883 ( +27) saved region 16473:21856 - closest 3' read 455918 ( +4) 16469:21883 ( +27) search for confused edges: tig 183 read 122267 pos 16474-22636 IS confused by 5' edge to read 135830 - best edge read 455918 len 5378 erate 0.0188 score 5276.89 - alt edge len 3374 erate 0.0260 score 3286.28 - absdiff 1990.62 percdiff 46.4925 tig 183 read 122267 pos 16474-22636 IS confused by 5' edge to read 386963 - best edge read 455918 len 5378 erate 0.0188 score 5276.89 - alt edge len 3831 erate 0.0364 score 3691.55 - absdiff 1585.34 percdiff 35.3538 saved region 16473:21856 - 2 best edges are potentially confused break tig 183 into up to 3 pieces: 0 15973 unique (length 15973) 15973 22356 repeat (length 6383) 22356 26903 unique (length 4547) Creating Unitig 90656 Creating Unitig 90657 Creating Unitig 90658 For tig 183 unique region 0 15973 - 0/ 39 reads repeat/unique - unitig 90656 created. For tig 183 repeat region 15973 22356 - 35/ 0 reads repeat/unique - unitig 90657 created. For tig 183 unique region 22356 26903 - 0/ 3 reads repeat/unique - unitig 90658 created. Annotating repeats in reads for tig 184/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12382:15770 - closest read 406576 ( +2) 12380:18548 ( +2778) (contained) saved region 12382:15770 - closest 5' read 406576 ( +2) 12380:18548 ( +2778) saved region 12382:15770 - closest 3' read 406576 ( +2) 12380:18548 ( +2778) search for confused edges: discard region 12382:15770 - no confusion in best edges Annotating repeats in reads for tig 185/90584. Annotated with 132 overlaps. Scan reads to discard spanned repeats. discard region 27626:29578 - contained in read 52712 24454- 32373 discard region 30164:34546 - contained in read 381899 27609- 37392 discard region 35698:38118 - contained in read 466580 33172- 40990 thickest edges to the repeat regions: saved region 5613:10631 - closest read 167211 ( +289) 5324:11684 ( +1053) (contained) saved region 5613:10631 - closest read 196314 ( +265) 5348:10720 ( +89) (contained) saved region 5613:10631 - closest read 85960 ( +262) 5351:11674 ( +1043) (contained) saved region 5613:10631 - closest read 202573 ( +258) 5355:10873 ( +242) (contained) saved region 5613:10631 - closest read 367927 ( +140) 5473:11692 ( +1061) (contained) saved region 5613:10631 - closest read 278974 ( +44) 5569:10642 ( +11) (contained) saved region 5613:10631 - closest 5' read 367927 ( +140) 5473:11692 ( +1061) saved region 5613:10631 - closest 3' read 167211 ( +289) 5324:11684 ( +1053) saved region 11691:25741 - closest 5' read 224445 ( +1709) 9982:15777 ( -9964) saved region 11691:25741 - closest 3' read 165369 ( -2593) 14284:25749 ( +8) search for confused edges: tig 185 read 224445 pos 9982-15777 IS confused by 3' edge to read 466580 - best edge read 165369 len 1493 erate 0.0372 score 1437.46 - alt edge len 773 erate 0.0389 score 742.93 - absdiff 694.53 percdiff 63.7069 discard region 5613:10631 - no confusion in best edges saved region 11691:25741 - 1 best edges are potentially confused break tig 185 into up to 3 pieces: 0 11191 unique (length 11191) 11191 26241 repeat (length 15050) 26241 43436 unique (length 17195) Creating Unitig 90659 Creating Unitig 90660 Creating Unitig 90661 For tig 185 unique region 0 11191 - 0/ 81 reads repeat/unique - unitig 90659 created. For tig 185 repeat region 11191 26241 - 31/ 0 reads repeat/unique - unitig 90660 created. For tig 185 unique region 26241 43436 - 0/ 32 reads repeat/unique - unitig 90661 created. Annotating repeats in reads for tig 186/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 2006:3756 - contained in read 184226 0- 7303 discard region 13218:17701 - contained in read 35697 12038- 18573 thickest edges to the repeat regions: saved region 11510:13117 - closest read 125858 ( +4090) 7420:13132 ( +15) (contained) saved region 11510:13117 - closest 5' read 125858 ( +4090) 7420:13132 ( +15) saved region 11510:13117 - closest 3' read 125858 ( +4090) 7420:13132 ( +15) saved region 21184:21831 - closest read 374529 ( +6059) 15125:21834 ( +3) (contained) saved region 21184:21831 - closest read 91895 ( +3489) 17695:21868 ( +37) (contained) saved region 21184:21831 - closest 5' read 91895 ( +3489) 17695:21868 ( +37) saved region 21184:21831 - closest 3' read 374529 ( +6059) 15125:21834 ( +3) search for confused edges: discard region 11510:13117 - no confusion in best edges discard region 21184:21831 - no confusion in best edges Annotating repeats in reads for tig 187/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 24907:25674 - contained in read 474066 20009- 26356 discard region 25811:27805 - contained in read 159546 22997- 32556 discard region 28116:28750 - contained in read 159546 22997- 32556 discard region 33275:36040 - contained in read 74549 29459- 42320 discard region 37781:39394 - contained in read 74549 29459- 42320 thickest edges to the repeat regions: saved region 6355:15390 - closest read 128259 ( +7) 6348:25811 (+10421) (contained) saved region 6355:15390 - closest 5' read 128259 ( +7) 6348:25811 (+10421) saved region 6355:15390 - closest 3' read 128259 ( +7) 6348:25811 (+10421) search for confused edges: discard region 6355:15390 - no confusion in best edges Annotating repeats in reads for tig 188/90584. Annotated with 270 overlaps. Scan reads to discard spanned repeats. discard region 0:9869 - contained in read 476131 0- 14263 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 190/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8001:17573 - closest 5' read 458056 ( +8) 7993:17410 ( -163) saved region 8001:17573 - closest 3' read 1316 ( -2035) 10036:17592 ( +19) search for confused edges: discard region 8001:17573 - no confusion in best edges Annotating repeats in reads for tig 193/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 194/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 8585:10040 - contained in read 385386 5131- 12025 thickest edges to the repeat regions: saved region 5140:7483 - closest read 385386 ( +9) 5131:12025 ( +4542) (contained) saved region 5140:7483 - closest 5' read 385386 ( +9) 5131:12025 ( +4542) saved region 5140:7483 - closest 3' read 385386 ( +9) 5131:12025 ( +4542) search for confused edges: discard region 5140:7483 - no confusion in best edges Annotating repeats in reads for tig 196/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1158:7303 - contained in read 9900 143- 7303 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 198/90584. Annotated with 61 overlaps. Scan reads to discard spanned repeats. discard region 579:1185 - contained in read 436324 0- 8824 discard region 1505:2479 - contained in read 436324 0- 8824 thickest edges to the repeat regions: saved region 4436:11118 - closest 5' read 451793 ( +2931) 1505:11065 ( -53) saved region 4436:11118 - closest 3' read 105221 ( -2574) 7010:13293 ( +2175) search for confused edges: tig 198 read 343334 pos 4498-11068 NOT confused by 5' edge to read 45857 - best edge read 211709 len 6349 erate 0.0280 score 6171.23 - alt edge len 791 erate 0.0281 score 768.77 - absdiff 5402.46 percdiff 155.6903 tig 198 read 343334 pos 4498-11068 IS confused by 5' edge to read 337069 - best edge read 211709 len 6349 erate 0.0280 score 6171.23 - alt edge len 5139 erate 0.0271 score 4999.73 - absdiff 1171.49 percdiff 20.9739 tig 198 read 343334 pos 4498-11068 IS confused by 5' edge to read 337072 - best edge read 211709 len 6349 erate 0.0280 score 6171.23 - alt edge len 5144 erate 0.0337 score 4970.65 - absdiff 1200.58 percdiff 21.5508 tig 198 read 343334 pos 4498-11068 IS confused by 5' edge to read 439265 - best edge read 211709 len 6349 erate 0.0280 score 6171.23 - alt edge len 6346 erate 0.0280 score 6168.31 - absdiff 2.92 percdiff 0.0473 tig 198 read 343334 pos 4498-11068 NOT confused by 3' edge to read 462843 - best edge read 451793 len 6567 erate 0.0310 score 6363.42 - alt edge len 1445 erate 0.0320 score 1398.76 - absdiff 4964.66 percdiff 127.9192 saved region 4436:11118 - 3 best edges are potentially confused break tig 198 into up to 3 pieces: 0 3936 unique (length 3936) 3936 11618 repeat (length 7682) 11618 25800 unique (length 14182) Creating Unitig 90662 Creating Unitig 90663 Creating Unitig 90664 For tig 198 unique region 0 3936 - 0/ 6 reads repeat/unique - unitig 90662 created. For tig 198 repeat region 3936 11618 - 53/ 0 reads repeat/unique - unitig 90663 created. For tig 198 unique region 11618 25800 - 0/ 12 reads repeat/unique - unitig 90664 created. Annotating repeats in reads for tig 199/90584. Annotated with 906 overlaps. Scan reads to discard spanned repeats. discard region 3649:13333 - contained in read 458597 1- 13333 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 201/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 202/90584. Annotated with 219 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 18287:26556 - closest 5' read 205068 ( +3834) 14453:20581 ( -5975) saved region 18287:26556 - closest 3' read 190880 ( -3184) 21471:30511 ( +3955) saved region 27555:30529 - closest read 525311 ( +0) 27555:32473 ( +1944) (contained) saved region 27555:30529 - closest 5' read 525311 ( +0) 27555:32473 ( +1944) saved region 27555:30529 - closest 3' read 525311 ( +0) 27555:32473 ( +1944) search for confused edges: tig 202 read 87797 pos 12124-20078 IS confused by 5' edge to read 409029 - best edge read 248862 len 1784 erate 0.0254 score 1738.69 - alt edge len 1368 erate 0.0317 score 1324.63 - absdiff 414.05 percdiff 27.0329 tig 202 read 248862 pos 18294-26239 NOT confused by 5' edge to read 41038 - best edge read 190880 len 4768 erate 0.0174 score 4685.04 - alt edge len 1473 erate 0.0265 score 1433.97 - absdiff 3251.07 percdiff 106.2615 tig 202 read 248862 pos 18294-26239 NOT confused by 5' edge to read 64122 - best edge read 190880 len 4768 erate 0.0174 score 4685.04 - alt edge len 1026 erate 0.0365 score 988.55 - absdiff 3696.49 percdiff 130.3051 tig 202 read 248862 pos 18294-26239 NOT confused by 5' edge to read 263483 - best edge read 190880 len 4768 erate 0.0174 score 4685.04 - alt edge len 2407 erate 0.0319 score 2330.22 - absdiff 2354.82 percdiff 67.1343 tig 202 read 248862 pos 18294-26239 NOT confused by 5' edge to read 263485 - best edge read 190880 len 4768 erate 0.0174 score 4685.04 - alt edge len 2388 erate 0.0315 score 2312.78 - absdiff 2372.26 percdiff 67.8000 tig 202 read 248862 pos 18294-26239 NOT confused by 5' edge to read 382043 - best edge read 190880 len 4768 erate 0.0174 score 4685.04 - alt edge len 2281 erate 0.0303 score 2211.89 - absdiff 2473.15 percdiff 71.7175 tig 202 read 248862 pos 18294-26239 NOT confused by 5' edge to read 394238 - best edge read 190880 len 4768 erate 0.0174 score 4685.04 - alt edge len 1453 erate 0.0358 score 1400.98 - absdiff 3284.05 percdiff 107.9213 tig 202 read 248862 pos 18294-26239 NOT confused by 5' edge to read 394241 - best edge read 190880 len 4768 erate 0.0174 score 4685.04 - alt edge len 1469 erate 0.0307 score 1423.90 - absdiff 3261.14 percdiff 106.7660 tig 202 read 248862 pos 18294-26239 NOT confused by 5' edge to read 409029 - best edge read 190880 len 4768 erate 0.0174 score 4685.04 - alt edge len 932 erate 0.0355 score 898.91 - absdiff 3786.12 percdiff 135.6073 tig 202 read 248862 pos 18294-26239 NOT confused by 5' edge to read 525311 - best edge read 190880 len 4768 erate 0.0174 score 4685.04 - alt edge len 2003 erate 0.0342 score 1934.50 - absdiff 2750.54 percdiff 83.1037 tig 202 read 248862 pos 18294-26239 NOT confused by 5' edge to read 525438 - best edge read 190880 len 4768 erate 0.0174 score 4685.04 - alt edge len 687 erate 0.0291 score 667.01 - absdiff 4018.03 percdiff 150.1493 tig 202 read 248862 pos 18294-26239 NOT confused by 5' edge to read 525439 - best edge read 190880 len 4768 erate 0.0174 score 4685.04 - alt edge len 907 erate 0.0353 score 874.98 - absdiff 3810.05 percdiff 137.0518 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 41767 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 1412 erate 0.0365 score 1360.46 - absdiff 3336.37 percdiff 110.1604 tig 202 read 190880 pos 21471-30511 IS confused by 5' edge to read 96833 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 2944 erate 0.0181 score 2890.71 - absdiff 1806.11 percdiff 47.6074 tig 202 read 190880 pos 21471-30511 IS confused by 5' edge to read 96834 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 2946 erate 0.0174 score 2894.74 - absdiff 1802.09 percdiff 47.4761 tig 202 read 190880 pos 21471-30511 IS confused by 5' edge to read 96836 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 2927 erate 0.0200 score 2868.46 - absdiff 1828.37 percdiff 48.3357 tig 202 read 190880 pos 21471-30511 IS confused by 5' edge to read 111716 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 3224 erate 0.0260 score 3140.18 - absdiff 1556.65 percdiff 39.7257 tig 202 read 190880 pos 21471-30511 IS confused by 5' edge to read 111719 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 2932 erate 0.0255 score 2857.23 - absdiff 1839.59 percdiff 48.7048 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 251277 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 1852 erate 0.0346 score 1787.92 - absdiff 2908.91 percdiff 89.7153 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 251278 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 1579 erate 0.0427 score 1511.58 - absdiff 3185.25 percdiff 102.6109 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 364217 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 896 erate 0.0396 score 860.52 - absdiff 3836.31 percdiff 138.0626 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 388025 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 1668 erate 0.0354 score 1608.95 - absdiff 3087.88 percdiff 97.9379 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 388026 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 1530 erate 0.0385 score 1471.10 - absdiff 3225.73 percdiff 104.5971 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 389068 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 872 erate 0.0264 score 848.98 - absdiff 3847.85 percdiff 138.7661 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 433331 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 1071 erate 0.0216 score 1047.87 - absdiff 3648.96 percdiff 127.0376 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 451133 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 2403 erate 0.0283 score 2335.00 - absdiff 2361.83 percdiff 67.1755 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 509304 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 1780 erate 0.0287 score 1728.91 - absdiff 2967.91 percdiff 92.3758 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 512644 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 1048 erate 0.0239 score 1022.95 - absdiff 3673.88 percdiff 128.4621 tig 202 read 190880 pos 21471-30511 NOT confused by 5' edge to read 512645 - best edge read 248862 len 4780 erate 0.0174 score 4696.83 - alt edge len 1088 erate 0.0165 score 1070.05 - absdiff 3626.78 percdiff 125.7797 saved region 18287:26556 - 6 best edges are potentially confused discard region 27555:30529 - no confusion in best edges break tig 202 into up to 3 pieces: 0 17787 unique (length 17787) 17787 27056 repeat (length 9269) 27056 32473 unique (length 5417) Creating Unitig 90665 Creating Unitig 90666 Creating Unitig 90667 For tig 202 unique region 0 17787 - 0/ 41 reads repeat/unique - unitig 90665 created. For tig 202 repeat region 17787 27056 - 2/ 0 reads repeat/unique - unitig 90666 created. For tig 202 unique region 27056 32473 - 0/ 4 reads repeat/unique - unitig 90667 created. Annotating repeats in reads for tig 204/90584. Annotated with 983 overlaps. Scan reads to discard spanned repeats. discard region 10837:10300 - contained in read 351766 862- 12506 thickest edges to the repeat regions: saved region 13598:23224 - closest 5' read 124236 ( +3400) 10198:17672 ( -5552) saved region 13598:23224 - closest 3' read 83618 ( -4147) 17745:23224 ( +0) search for confused edges: tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 36821 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1980 erate 0.0364 score 1907.93 - absdiff 329.31 percdiff 15.8888 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 102403 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 805 erate 0.0376 score 774.73 - absdiff 1462.51 percdiff 97.1129 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 184649 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1692 erate 0.0386 score 1626.69 - absdiff 610.55 percdiff 31.6025 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 200277 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1740 erate 0.0380 score 1673.88 - absdiff 563.36 percdiff 28.8080 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 200278 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1860 erate 0.0264 score 1810.90 - absdiff 426.34 percdiff 21.0636 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 225280 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1689 erate 0.0273 score 1642.89 - absdiff 594.35 percdiff 30.6354 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 225281 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1535 erate 0.0352 score 1480.97 - absdiff 756.27 percdiff 40.6793 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 238832 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1428 erate 0.0323 score 1381.88 - absdiff 855.36 percdiff 47.2691 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 289935 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1981 erate 0.0349 score 1911.86 - absdiff 325.37 percdiff 15.6841 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 414390 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1931 erate 0.0353 score 1862.84 - absdiff 374.40 percdiff 18.2632 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 443010 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1461 erate 0.0281 score 1419.95 - absdiff 817.29 percdiff 44.6951 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 445536 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1301 erate 0.0308 score 1260.93 - absdiff 976.31 percdiff 55.8183 tig 204 read 124233 pos 9853-17615 IS confused by 3' edge to read 502484 - best edge read 458080 len 2329 erate 0.0394 score 2237.24 - alt edge len 1980 erate 0.0349 score 1910.90 - absdiff 326.34 percdiff 15.7343 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 19297 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 1646 erate 0.0289 score 1598.43 - absdiff 4538.25 percdiff 117.3415 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 36821 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2612 erate 0.0253 score 2545.92 - absdiff 3590.76 percdiff 82.7117 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 41614 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 1982 erate 0.0259 score 1930.67 - absdiff 4206.01 percdiff 104.2725 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 43611 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 962 erate 0.0229 score 939.97 - absdiff 5196.71 percdiff 146.8692 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 120433 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 1772 erate 0.0308 score 1717.42 - absdiff 4419.26 percdiff 112.5337 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 120434 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 1846 erate 0.0302 score 1790.25 - absdiff 4346.43 percdiff 109.6623 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 184649 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2326 erate 0.0243 score 2269.48 - absdiff 3867.20 percdiff 92.0088 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 193774 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2108 erate 0.0331 score 2038.23 - absdiff 4098.45 percdiff 100.2691 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 200277 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2374 erate 0.0258 score 2312.75 - absdiff 3823.93 percdiff 90.5133 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 200278 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2494 erate 0.0201 score 2443.87 - absdiff 3692.81 percdiff 86.0739 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 225280 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2323 erate 0.0288 score 2256.10 - absdiff 3880.58 percdiff 92.4743 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 225281 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2170 erate 0.0263 score 2112.93 - absdiff 4023.75 percdiff 97.5501 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 238832 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2062 erate 0.0403 score 1978.90 - absdiff 4157.78 percdiff 102.4641 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 264038 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 945 erate 0.0275 score 919.01 - absdiff 5217.67 percdiff 147.8995 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 289935 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2612 erate 0.0204 score 2558.72 - absdiff 3577.96 percdiff 82.2956 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 366916 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 1322 erate 0.0313 score 1280.62 - absdiff 4856.06 percdiff 130.9387 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 369722 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2853 erate 0.0380 score 2744.59 - absdiff 3392.09 percdiff 76.3876 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 369723 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2729 erate 0.0311 score 2644.13 - absdiff 3492.55 percdiff 79.5496 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 400747 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 1106 erate 0.0321 score 1070.50 - absdiff 5066.18 percdiff 140.5871 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 400749 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 1111 erate 0.0319 score 1075.56 - absdiff 5061.12 percdiff 140.3481 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 400750 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 1083 erate 0.0329 score 1047.37 - absdiff 5089.31 percdiff 141.6836 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 433343 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 796 erate 0.0402 score 764.00 - absdiff 5372.68 percdiff 155.7145 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 433344 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 800 erate 0.0365 score 770.80 - absdiff 5365.88 percdiff 155.3643 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 435911 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 853 erate 0.0434 score 815.98 - absdiff 5320.70 percdiff 153.0551 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 443010 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2096 erate 0.0148 score 2064.98 - absdiff 4071.70 percdiff 99.2897 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 445536 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 1935 erate 0.0220 score 1892.43 - absdiff 4244.25 percdiff 105.7215 tig 204 read 458080 pos 15286-21615 IS confused by 5' edge to read 467700 - best edge read 124233 len 2315 erate 0.0394 score 2223.79 - alt edge len 1117 erate 0.0395 score 1072.88 - absdiff 1150.91 percdiff 69.8227 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 502484 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2612 erate 0.0250 score 2546.70 - absdiff 3589.98 percdiff 82.6862 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 502485 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 2756 erate 0.0417 score 2641.07 - absdiff 3495.60 percdiff 79.6469 tig 204 read 458080 pos 15286-21615 NOT confused by 3' edge to read 506094 - best edge read 458079 len 6260 erate 0.0197 score 6136.68 - alt edge len 938 erate 0.0279 score 911.83 - absdiff 5224.85 percdiff 148.2540 tig 204 read 458079 pos 15355-21751 NOT confused by 5' edge to read 19297 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 1763 erate 0.0292 score 1711.52 - absdiff 2215.96 percdiff 78.5941 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 36821 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2720 erate 0.0257 score 2650.10 - absdiff 1277.39 percdiff 38.8406 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 41614 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2097 erate 0.0259 score 2042.69 - absdiff 1884.79 percdiff 63.1404 tig 204 read 458079 pos 15355-21751 NOT confused by 5' edge to read 43611 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 1083 erate 0.0249 score 1056.03 - absdiff 2871.45 percdiff 115.2379 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 120433 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 1889 erate 0.0283 score 1835.54 - absdiff 2091.94 percdiff 72.5987 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 120434 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 1962 erate 0.0288 score 1905.49 - absdiff 2021.99 percdiff 69.3295 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 184649 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2436 erate 0.0260 score 2372.66 - absdiff 1554.82 percdiff 49.3582 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 193774 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2222 erate 0.0331 score 2148.45 - absdiff 1779.03 percdiff 58.5599 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 200277 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2485 erate 0.0258 score 2420.89 - absdiff 1506.60 percdiff 47.4640 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 200278 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2604 erate 0.0231 score 2543.85 - absdiff 1383.63 percdiff 42.7620 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 225280 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2433 erate 0.0279 score 2365.12 - absdiff 1562.36 percdiff 49.6571 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 225281 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2283 erate 0.0267 score 2222.04 - absdiff 1705.44 percdiff 55.4657 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 238832 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2176 erate 0.0414 score 2085.91 - absdiff 1841.57 percdiff 61.2489 tig 204 read 458079 pos 15355-21751 NOT confused by 5' edge to read 264038 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 1066 erate 0.0300 score 1034.02 - absdiff 2893.46 percdiff 116.6365 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 289935 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2721 erate 0.0239 score 2655.97 - absdiff 1271.51 percdiff 38.6276 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 316033 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2884 erate 0.0437 score 2757.97 - absdiff 1169.51 percdiff 34.9868 tig 204 read 458079 pos 15355-21751 NOT confused by 5' edge to read 366916 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 1439 erate 0.0315 score 1393.67 - absdiff 2533.81 percdiff 95.2354 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 369722 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2968 erate 0.0392 score 2851.65 - absdiff 1075.83 percdiff 31.7394 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 369723 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2843 erate 0.0322 score 2751.46 - absdiff 1176.03 percdiff 35.2160 tig 204 read 458079 pos 15355-21751 NOT confused by 5' edge to read 400747 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 1224 erate 0.0314 score 1185.57 - absdiff 2741.92 percdiff 107.2517 tig 204 read 458079 pos 15355-21751 NOT confused by 5' edge to read 400749 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 1229 erate 0.0296 score 1192.62 - absdiff 2734.86 percdiff 106.8283 tig 204 read 458079 pos 15355-21751 NOT confused by 5' edge to read 400750 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 1202 erate 0.0338 score 1161.37 - absdiff 2766.11 percdiff 108.7125 tig 204 read 458079 pos 15355-21751 NOT confused by 5' edge to read 433343 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 917 erate 0.0371 score 882.98 - absdiff 3044.50 percdiff 126.5784 tig 204 read 458079 pos 15355-21751 NOT confused by 5' edge to read 433344 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 921 erate 0.0372 score 886.74 - absdiff 3040.74 percdiff 126.3234 tig 204 read 458079 pos 15355-21751 NOT confused by 5' edge to read 435911 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 974 erate 0.0359 score 939.03 - absdiff 2988.45 percdiff 122.8168 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 443010 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2210 erate 0.0158 score 2175.08 - absdiff 1752.40 percdiff 57.4316 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 445536 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2051 erate 0.0302 score 1989.06 - absdiff 1938.42 percdiff 65.5255 tig 204 read 458079 pos 15355-21751 NOT confused by 5' edge to read 459664 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 602 erate 0.0386 score 578.76 - absdiff 3348.72 percdiff 148.6257 tig 204 read 458079 pos 15355-21751 NOT confused by 3' edge to read 467700 - best edge read 458080 len 6276 erate 0.0197 score 6152.36 - alt edge len 1052 erate 0.0411 score 1008.76 - absdiff 5143.60 percdiff 143.6534 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 502484 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2723 erate 0.0257 score 2653.02 - absdiff 1274.46 percdiff 38.7345 tig 204 read 458079 pos 15355-21751 IS confused by 5' edge to read 502485 - best edge read 83618 len 4006 erate 0.0196 score 3927.48 - alt edge len 2870 erate 0.0415 score 2750.89 - absdiff 1176.59 percdiff 35.2357 saved region 13598:23224 - 33 best edges are potentially confused break tig 204 into up to 2 pieces: 0 13098 unique (length 13098) 13098 23224 repeat (length 10126) Creating Unitig 90668 Creating Unitig 90669 For tig 204 unique region 0 13098 - 0/ 15 reads repeat/unique - unitig 90668 created. For tig 204 repeat region 13098 23224 - 27/ 0 reads repeat/unique - unitig 90669 created. Annotating repeats in reads for tig 205/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 207/90584. Annotated with 77 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:7609 - closest 5' read 127454 ( +0) 0:6389 ( -1220) saved region 0:7609 - closest 3' read 205901 ( -801) 801:8541 ( +932) saved region 12164:14313 - closest 5' read 385559 ( +5166) 6998:14303 ( -10) saved region 12164:14313 - closest 3' read 103700 ( -3) 12167:17896 ( +3583) search for confused edges: tig 207 read 205902 pos 816-8529 IS confused by 5' edge to read 77250 - best edge read 127454 len 5573 erate 0.0142 score 5493.86 - alt edge len 3736 erate 0.0131 score 3687.06 - absdiff 1806.81 percdiff 39.3600 tig 207 read 385559 pos 6998-14303 IS confused by 5' edge to read 74278 - best edge read 448331 len 2135 erate 0.0407 score 2048.11 - alt edge len 979 erate 0.0265 score 953.06 - absdiff 1095.05 percdiff 72.9750 tig 207 read 385559 pos 6998-14303 IS confused by 5' edge to read 251405 - best edge read 448331 len 2135 erate 0.0407 score 2048.11 - alt edge len 2135 erate 0.0425 score 2044.26 - absdiff 3.84 percdiff 0.1878 tig 207 read 385559 pos 6998-14303 IS confused by 5' edge to read 362607 - best edge read 448331 len 2135 erate 0.0407 score 2048.11 - alt edge len 1281 erate 0.0429 score 1226.05 - absdiff 822.06 percdiff 50.2152 tig 207 read 385559 pos 6998-14303 IS confused by 5' edge to read 384744 - best edge read 448331 len 2135 erate 0.0407 score 2048.11 - alt edge len 1515 erate 0.0385 score 1456.67 - absdiff 591.43 percdiff 33.7501 tig 207 read 448331 pos 12187-16996 IS confused by 3' edge to read 559 - best edge read 385559 len 2116 erate 0.0407 score 2029.88 - alt edge len 2115 erate 0.0341 score 2042.88 - absdiff 13.00 percdiff 0.6384 saved region 0:7609 - 1 best edges are potentially confused saved region 12164:14313 - 5 best edges are potentially confused break tig 207 into up to 4 pieces: 0 8109 repeat (length 8109) 8109 11664 unique (length 3555) 11664 14813 repeat (length 3149) 14813 31301 unique (length 16488) Creating Unitig 90670 Creating Unitig 90671 Creating Unitig 90672 Creating Unitig 90673 For tig 207 repeat region 0 8109 - 13/ 0 reads repeat/unique - unitig 90670 created. For tig 207 unique region 8109 11664 - 0/ 29 reads repeat/unique - unitig 90671 created. For tig 207 repeat region 11664 14813 - 7/ 0 reads repeat/unique - unitig 90672 created. For tig 207 unique region 14813 31301 - 0/ 11 reads repeat/unique - unitig 90673 created. Annotating repeats in reads for tig 212/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 214/90584. Annotated with 106 overlaps. Scan reads to discard spanned repeats. discard region 0:4466 - contained in read 400749 0- 6726 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 215/90584. Annotated with 58 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 361:12327 - closest 5' read 186739 ( +361) 0:7085 ( -5242) saved region 361:12327 - closest 3' read 206579 ( -24) 385:12334 ( +7) search for confused edges: tig 215 read 206579 pos 385-12334 IS confused by 5' edge to read 28552 - best edge read 186739 len 6700 erate 0.0156 score 6595.48 - alt edge len 5155 erate 0.0240 score 5031.28 - absdiff 1564.20 percdiff 26.9069 tig 215 read 206579 pos 385-12334 IS confused by 5' edge to read 83428 - best edge read 186739 len 6700 erate 0.0156 score 6595.48 - alt edge len 5351 erate 0.0190 score 5249.33 - absdiff 1346.15 percdiff 22.7298 tig 215 read 206579 pos 385-12334 NOT confused by 5' edge to read 216366 - best edge read 186739 len 6700 erate 0.0156 score 6595.48 - alt edge len 4492 erate 0.0151 score 4424.17 - absdiff 2171.31 percdiff 39.4079 tig 215 read 206579 pos 385-12334 NOT confused by 5' edge to read 216368 - best edge read 186739 len 6700 erate 0.0156 score 6595.48 - alt edge len 4471 erate 0.0184 score 4388.73 - absdiff 2206.75 percdiff 40.1803 tig 215 read 206579 pos 385-12334 NOT confused by 5' edge to read 216369 - best edge read 186739 len 6700 erate 0.0156 score 6595.48 - alt edge len 4493 erate 0.0147 score 4426.95 - absdiff 2168.53 percdiff 39.3475 saved region 361:12327 - 2 best edges are potentially confused Annotating repeats in reads for tig 216/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 33:4173 - contained in read 426309 0- 7650 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 218/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 219/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 19533:21345 - contained in read 386091 9549- 22560 discard region 22945:25225 - contained in read 35341 19329- 27620 discard region 26751:28581 - contained in read 448790 24115- 30307 discard region 30152:32441 - contained in read 131568 25668- 35622 discard region 32521:33552 - contained in read 131568 25668- 35622 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 221/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6705:7207 - contained in read 171958 2649- 10270 discard region 11195:11714 - contained in read 56015 3534- 12713 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 222/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7385:7902 - closest 5' read 186851 ( +5159) 2226:7897 ( -5) saved region 7385:7902 - closest 3' read 105651 ( -1) 7386:13749 ( +5847) search for confused edges: discard region 7385:7902 - no confusion in best edges Annotating repeats in reads for tig 224/90584. Annotated with 604 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10299:16352 - closest 5' read 34319 ( +6922) 3377:13567 ( -2785) saved region 10299:16352 - closest 3' read 363580 ( -48) 10347:25485 ( +9133) saved region 19276:26180 - closest 5' read 317931 ( +614) 18662:25702 ( -478) saved region 19276:26180 - closest 3' read 507959 ( -5) 19281:26192 ( +12) search for confused edges: tig 224 read 34320 pos 2189-13560 IS confused by 5' edge to read 36098 - best edge read 417930 len 3233 erate 0.0396 score 3104.97 - alt edge len 2576 erate 0.0272 score 2505.93 - absdiff 599.04 percdiff 21.3527 tig 224 read 34320 pos 2189-13560 IS confused by 5' edge to read 36099 - best edge read 417930 len 3233 erate 0.0396 score 3104.97 - alt edge len 2552 erate 0.0231 score 2493.05 - absdiff 611.92 percdiff 21.8622 tig 224 read 34320 pos 2189-13560 IS confused by 5' edge to read 116112 - best edge read 417930 len 3233 erate 0.0396 score 3104.97 - alt edge len 1274 erate 0.0385 score 1224.95 - absdiff 1880.02 percdiff 86.8386 tig 224 read 34320 pos 2189-13560 IS confused by 5' edge to read 380723 - best edge read 417930 len 3233 erate 0.0396 score 3104.97 - alt edge len 1221 erate 0.0393 score 1173.01 - absdiff 1931.96 percdiff 90.3209 tig 224 read 34320 pos 2189-13560 IS confused by 5' edge to read 382660 - best edge read 417930 len 3233 erate 0.0396 score 3104.97 - alt edge len 1429 erate 0.0343 score 1379.99 - absdiff 1724.99 percdiff 76.9232 tig 224 read 34320 pos 2189-13560 IS confused by 5' edge to read 412709 - best edge read 417930 len 3233 erate 0.0396 score 3104.97 - alt edge len 3127 erate 0.0397 score 3002.86 - absdiff 102.12 percdiff 3.3437 tig 224 read 34320 pos 2189-13560 NOT confused by 5' edge to read 470084 - best edge read 417930 len 3233 erate 0.0396 score 3104.97 - alt edge len 1001 erate 0.0299 score 971.07 - absdiff 2133.90 percdiff 104.7046 tig 224 read 34320 pos 2189-13560 IS confused by 5' edge to read 503542 - best edge read 417930 len 3233 erate 0.0396 score 3104.97 - alt edge len 3118 erate 0.0413 score 2989.23 - absdiff 115.75 percdiff 3.7986 tig 224 read 34320 pos 2189-13560 IS confused by 5' edge to read 503548 - best edge read 417930 len 3233 erate 0.0396 score 3104.97 - alt edge len 3106 erate 0.0434 score 2971.20 - absdiff 133.77 percdiff 4.4032 tig 224 read 34320 pos 2189-13560 IS confused by 5' edge to read 530014 - best edge read 417930 len 3233 erate 0.0396 score 3104.97 - alt edge len 2915 erate 0.0268 score 2836.88 - absdiff 268.10 percdiff 9.0240 tig 224 read 417930 pos 10327-16140 IS confused by 5' edge to read 36099 - best edge read 227034 len 5812 erate 0.0397 score 5581.26 - alt edge len 5200 erate 0.0379 score 5002.92 - absdiff 578.34 percdiff 10.9284 tig 224 read 417930 pos 10327-16140 IS confused by 5' edge to read 227033 - best edge read 227034 len 5812 erate 0.0397 score 5581.26 - alt edge len 5770 erate 0.0447 score 5512.08 - absdiff 69.18 percdiff 1.2473 tig 224 read 417930 pos 10327-16140 IS confused by 5' edge to read 412709 - best edge read 227034 len 5812 erate 0.0397 score 5581.26 - alt edge len 5708 erate 0.0433 score 5460.84 - absdiff 120.42 percdiff 2.1811 tig 224 read 417930 pos 10327-16140 IS confused by 5' edge to read 530014 - best edge read 227034 len 5812 erate 0.0397 score 5581.26 - alt edge len 5544 erate 0.0418 score 5312.26 - absdiff 269.00 percdiff 4.9388 tig 224 read 227034 pos 10328-16231 IS confused by 5' edge to read 36098 - best edge read 502909 len 5885 erate 0.0425 score 5634.89 - alt edge len 5276 erate 0.0440 score 5043.86 - absdiff 591.03 percdiff 11.0693 tig 224 read 227034 pos 10328-16231 IS confused by 5' edge to read 36099 - best edge read 502909 len 5885 erate 0.0425 score 5634.89 - alt edge len 5252 erate 0.0347 score 5069.76 - absdiff 565.13 percdiff 10.5586 tig 224 read 227034 pos 10328-16231 NOT confused by 5' edge to read 44950 - best edge read 502909 len 5885 erate 0.0425 score 5634.89 - alt edge len 2096 erate 0.0225 score 2048.84 - absdiff 3586.05 percdiff 93.3414 tig 224 read 227034 pos 10328-16231 IS confused by 5' edge to read 227033 - best edge read 502909 len 5885 erate 0.0425 score 5634.89 - alt edge len 5861 erate 0.0174 score 5759.02 - absdiff 124.13 percdiff 2.1789 tig 224 read 227034 pos 10328-16231 IS confused by 5' edge to read 380723 - best edge read 502909 len 5885 erate 0.0425 score 5634.89 - alt edge len 3924 erate 0.0206 score 3843.17 - absdiff 1791.72 percdiff 37.8078 tig 224 read 227034 pos 10328-16231 IS confused by 5' edge to read 382660 - best edge read 502909 len 5885 erate 0.0425 score 5634.89 - alt edge len 4130 erate 0.0433 score 3951.17 - absdiff 1683.72 percdiff 35.1284 tig 224 read 227034 pos 10328-16231 IS confused by 5' edge to read 412709 - best edge read 502909 len 5885 erate 0.0425 score 5634.89 - alt edge len 5799 erate 0.0445 score 5540.94 - absdiff 93.94 percdiff 1.6812 tig 224 read 227034 pos 10328-16231 IS confused by 5' edge to read 470084 - best edge read 502909 len 5885 erate 0.0425 score 5634.89 - alt edge len 3704 erate 0.0181 score 3636.96 - absdiff 1997.93 percdiff 43.0967 tig 224 read 227034 pos 10328-16231 IS confused by 5' edge to read 530014 - best edge read 502909 len 5885 erate 0.0425 score 5634.89 - alt edge len 5620 erate 0.0276 score 5464.89 - absdiff 170.00 percdiff 3.0631 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 22254 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 4586 erate 0.0290 score 4453.01 - absdiff 1196.24 percdiff 23.6827 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 22256 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 4621 erate 0.0329 score 4468.97 - absdiff 1180.28 percdiff 23.3298 tig 224 read 502909 pos 10346-16329 IS confused by 5' edge to read 36099 - best edge read 363580 len 5982 erate 0.0424 score 5728.36 - alt edge len 5366 erate 0.0416 score 5142.77 - absdiff 585.59 percdiff 10.7733 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 47413 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 4750 erate 0.0352 score 4582.80 - absdiff 1066.45 percdiff 20.8453 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 47415 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 4757 erate 0.0320 score 4604.78 - absdiff 1044.47 percdiff 20.3720 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 62201 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 5848 erate 0.0342 score 5648.00 - absdiff 1.25 percdiff 0.0222 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 68302 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 5595 erate 0.0333 score 5408.69 - absdiff 240.56 percdiff 4.3510 tig 224 read 502909 pos 10346-16329 NOT confused by 3' edge to read 80465 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 3587 erate 0.0413 score 3438.86 - absdiff 2210.39 percdiff 48.6436 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 129683 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 5568 erate 0.0307 score 5397.06 - absdiff 252.19 percdiff 4.5660 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 341312 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 4937 erate 0.0263 score 4807.16 - absdiff 842.09 percdiff 16.1067 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 354695 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 5874 erate 0.0366 score 5659.01 - absdiff 9.76 percdiff 0.1726 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 458812 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 5759 erate 0.0351 score 5556.86 - absdiff 92.39 percdiff 1.6489 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 500202 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 5634 erate 0.0252 score 5492.02 - absdiff 157.23 percdiff 2.8224 tig 224 read 502909 pos 10346-16329 IS confused by 3' edge to read 508580 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 4320 erate 0.0340 score 4173.12 - absdiff 1476.13 percdiff 30.0565 tig 224 read 502909 pos 10346-16329 NOT confused by 3' edge to read 512964 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 2410 erate 0.0378 score 2318.90 - absdiff 3330.35 percdiff 83.5915 tig 224 read 502909 pos 10346-16329 NOT confused by 3' edge to read 512965 - best edge read 227034 len 5900 erate 0.0425 score 5649.25 - alt edge len 2435 erate 0.0386 score 2341.01 - absdiff 3308.24 percdiff 82.8069 tig 224 read 502909 pos 10346-16329 IS confused by 5' edge to read 530014 - best edge read 363580 len 5982 erate 0.0424 score 5728.36 - alt edge len 5723 erate 0.0433 score 5475.19 - absdiff 253.17 percdiff 4.5194 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 22254 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 4576 erate 0.0269 score 4452.91 - absdiff 1238.11 percdiff 24.4109 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 22256 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 4611 erate 0.0297 score 4474.05 - absdiff 1216.96 percdiff 23.9440 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 47413 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 4741 erate 0.0245 score 4624.85 - absdiff 1066.17 percdiff 20.6705 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 47415 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 4746 erate 0.0225 score 4639.22 - absdiff 1051.80 percdiff 20.3636 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 62201 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 5817 erate 0.0406 score 5580.83 - absdiff 110.19 percdiff 1.9551 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 68302 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 5583 erate 0.0308 score 5411.04 - absdiff 279.97 percdiff 5.0436 tig 224 read 363580 pos 10347-25485 NOT confused by 3' edge to read 80465 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 3576 erate 0.0436 score 3420.09 - absdiff 2270.93 percdiff 49.8497 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 129683 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 5554 erate 0.0292 score 5391.82 - absdiff 299.19 percdiff 5.3992 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 174124 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 4527 erate 0.0392 score 4349.54 - absdiff 1341.48 percdiff 26.7211 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 311561 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 5098 erate 0.0394 score 4897.14 - absdiff 793.88 percdiff 14.9956 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 341312 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 4925 erate 0.0183 score 4834.87 - absdiff 856.14 percdiff 16.2674 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 354695 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 5845 erate 0.0426 score 5596.00 - absdiff 95.01 percdiff 1.6836 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 458812 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 5749 erate 0.0240 score 5611.02 - absdiff 79.99 percdiff 1.4155 tig 224 read 363580 pos 10347-25485 NOT confused by 3' edge to read 499665 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 2086 erate 0.0393 score 2004.02 - absdiff 3687.00 percdiff 95.8279 tig 224 read 363580 pos 10347-25485 NOT confused by 3' edge to read 499666 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 2085 erate 0.0417 score 1998.06 - absdiff 3692.96 percdiff 96.0574 tig 224 read 363580 pos 10347-25485 NOT confused by 3' edge to read 499667 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 2084 erate 0.0379 score 2005.02 - absdiff 3686.00 percdiff 95.7896 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 500202 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 5623 erate 0.0283 score 5463.87 - absdiff 227.15 percdiff 4.0726 tig 224 read 363580 pos 10347-25485 IS confused by 3' edge to read 508580 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 4311 erate 0.0348 score 4160.98 - absdiff 1530.04 percdiff 31.0605 tig 224 read 363580 pos 10347-25485 NOT confused by 3' edge to read 512964 - best edge read 502909 len 5943 erate 0.0424 score 5691.02 - alt edge len 2393 erate 0.0397 score 2298.00 - absdiff 3393.02 percdiff 84.9421 tig 224 read 317931 pos 18662-25702 IS confused by 5' edge to read 386186 - best edge read 507959 len 6421 erate 0.0131 score 6336.88 - alt edge len 4782 erate 0.0069 score 4749.00 - absdiff 1587.88 percdiff 28.6469 tig 224 read 317931 pos 18662-25702 IS confused by 5' edge to read 391474 - best edge read 507959 len 6421 erate 0.0131 score 6336.88 - alt edge len 4643 erate 0.0041 score 4623.96 - absdiff 1712.92 percdiff 31.2553 tig 224 read 317931 pos 18662-25702 IS confused by 5' edge to read 507246 - best edge read 507959 len 6421 erate 0.0131 score 6336.88 - alt edge len 5033 erate 0.0066 score 4999.78 - absdiff 1337.10 percdiff 23.5890 tig 224 read 507959 pos 19281-26192 NOT confused by 3' edge to read 48409 - best edge read 317931 len 6442 erate 0.0131 score 6357.61 - alt edge len 3298 erate 0.0241 score 3218.52 - absdiff 3139.09 percdiff 65.5608 tig 224 read 507959 pos 19281-26192 NOT confused by 3' edge to read 48411 - best edge read 317931 len 6442 erate 0.0131 score 6357.61 - alt edge len 3315 erate 0.0197 score 3249.69 - absdiff 3107.92 percdiff 64.6990 saved region 10299:16352 - 49 best edges are potentially confused saved region 19276:26180 - 3 best edges are potentially confused break tig 224 into up to 5 pieces: 0 9799 unique (length 9799) 9799 16852 repeat (length 7053) 16852 18776 unique (length 1924) 18776 26680 repeat (length 7904) 26680 28393 unique (length 1713) Creating Unitig 90674 Creating Unitig 90675 Creating Unitig 90676 Creating Unitig 90677 Creating Unitig 90678 For tig 224 unique region 0 9799 - 0/ 18 reads repeat/unique - unitig 90674 created. For tig 224 repeat region 9799 16852 - 98/ 0 reads repeat/unique - unitig 90675 created. For tig 224 unique region 16852 18776 - 0/ 12 reads repeat/unique - unitig 90676 created. For tig 224 repeat region 18776 26680 - 39/ 0 reads repeat/unique - unitig 90677 created. For tig 224 unique region 26680 28393 - 0/ 3 reads repeat/unique - unitig 90678 created. Annotating repeats in reads for tig 227/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 8448:14874 - contained in read 348083 4493- 15920 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 228/90584. Annotated with 327 overlaps. Scan reads to discard spanned repeats. discard region 1429:5887 - contained in read 509751 31- 5894 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 229/90584. Annotated with 1535 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4264:35724 - closest 5' read 405603 ( +532) 3732:14132 (-21592) saved region 4264:35724 - closest 3' read 52555 (-19254) 23518:35724 ( +0) search for confused edges: tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 53069 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 1151 erate 0.0316 score 1114.63 - absdiff 7410.50 percdiff 153.7487 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 53070 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 1404 erate 0.0279 score 1364.83 - absdiff 7160.30 percdiff 144.7994 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 95724 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 2971 erate 0.0289 score 2885.14 - absdiff 5639.99 percdiff 98.8582 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 290220 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 2753 erate 0.0273 score 2677.84 - absdiff 5847.28 percdiff 104.3881 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 298404 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 1678 erate 0.0257 score 1634.88 - absdiff 6890.25 percdiff 135.6348 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 298406 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 1677 erate 0.0287 score 1628.87 - absdiff 6896.26 percdiff 135.8333 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 298407 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 1680 erate 0.0304 score 1628.93 - absdiff 6896.20 percdiff 135.8314 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 343460 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 1758 erate 0.0353 score 1695.94 - absdiff 6829.18 percdiff 133.6295 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 370295 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 3765 erate 0.0259 score 3667.49 - absdiff 4857.64 percdiff 79.6817 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 382479 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 817 erate 0.0379 score 786.04 - absdiff 7739.09 percdiff 166.2325 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 382481 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 950 erate 0.0348 score 916.94 - absdiff 7608.19 percdiff 161.1551 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 424802 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 2531 erate 0.0281 score 2459.88 - absdiff 6065.25 percdiff 110.4278 tig 229 read 405602 pos 3533-14065 NOT confused by 5' edge to read 445355 - best edge read 326003 len 8768 erate 0.0277 score 8525.13 - alt edge len 2735 erate 0.0287 score 2656.51 - absdiff 5868.62 percdiff 104.9690 tig 229 read 326003 pos 5297-14942 NOT confused by 3' edge to read 31753 - best edge read 405602 len 8744 erate 0.0277 score 8501.79 - alt edge len 2602 erate 0.0385 score 2501.82 - absdiff 5999.97 percdiff 109.0545 tig 229 read 326003 pos 5297-14942 NOT confused by 5' edge to read 53069 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 1429 erate 0.0393 score 1372.84 - absdiff 3109.94 percdiff 106.2207 tig 229 read 326003 pos 5297-14942 NOT confused by 5' edge to read 53070 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 1440 erate 0.0299 score 1396.94 - absdiff 3085.84 percdiff 104.9653 tig 229 read 326003 pos 5297-14942 NOT confused by 5' edge to read 83970 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 964 erate 0.0364 score 928.91 - absdiff 3553.87 percdiff 131.3405 tig 229 read 326003 pos 5297-14942 NOT confused by 5' edge to read 83971 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 1209 erate 0.0365 score 1164.87 - absdiff 3317.91 percdiff 117.4969 tig 229 read 326003 pos 5297-14942 IS confused by 5' edge to read 95724 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 2876 erate 0.0350 score 2775.34 - absdiff 1707.44 percdiff 47.0491 tig 229 read 326003 pos 5297-14942 NOT confused by 3' edge to read 261237 - best edge read 405602 len 8744 erate 0.0277 score 8501.79 - alt edge len 1270 erate 0.0362 score 1224.03 - absdiff 7277.77 percdiff 149.6587 tig 229 read 326003 pos 5297-14942 NOT confused by 5' edge to read 298404 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 1468 erate 0.0334 score 1418.97 - absdiff 3063.81 percdiff 103.8272 tig 229 read 326003 pos 5297-14942 NOT confused by 5' edge to read 298406 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 1836 erate 0.0344 score 1772.84 - absdiff 2709.94 percdiff 86.6401 tig 229 read 326003 pos 5297-14942 NOT confused by 5' edge to read 298407 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 1346 erate 0.0357 score 1297.95 - absdiff 3184.83 percdiff 110.1879 tig 229 read 326003 pos 5297-14942 NOT confused by 5' edge to read 343460 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 1547 erate 0.0382 score 1487.90 - absdiff 2994.87 percdiff 100.3193 tig 229 read 326003 pos 5297-14942 IS confused by 5' edge to read 370295 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 3301 erate 0.0319 score 3195.70 - absdiff 1287.08 percdiff 33.5244 tig 229 read 326003 pos 5297-14942 IS confused by 5' edge to read 445355 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 2516 erate 0.0322 score 2434.98 - absdiff 2047.79 percdiff 59.2039 tig 229 read 326003 pos 5297-14942 NOT confused by 5' edge to read 469691 - best edge read 340472 len 4642 erate 0.0343 score 4482.78 - alt edge len 1488 erate 0.0370 score 1432.94 - absdiff 3049.84 percdiff 103.1095 tig 229 read 340472 pos 10300-18479 NOT confused by 3' edge to read 31753 - best edge read 405602 len 5547 erate 0.0289 score 5386.69 - alt edge len 3254 erate 0.0403 score 3122.86 - absdiff 2263.83 percdiff 53.2067 tig 229 read 340472 pos 10300-18479 NOT confused by 3' edge to read 261237 - best edge read 405602 len 5547 erate 0.0289 score 5386.69 - alt edge len 3149 erate 0.0385 score 3027.76 - absdiff 2358.93 percdiff 56.0685 tig 229 read 340472 pos 10300-18479 IS confused by 3' edge to read 358859 - best edge read 405602 len 5547 erate 0.0289 score 5386.69 - alt edge len 3456 erate 0.0284 score 3357.85 - absdiff 2028.84 percdiff 46.4025 tig 229 read 340472 pos 10300-18479 IS confused by 3' edge to read 358861 - best edge read 405602 len 5547 erate 0.0289 score 5386.69 - alt edge len 3455 erate 0.0365 score 3328.89 - absdiff 2057.80 percdiff 47.2211 tig 229 read 340472 pos 10300-18479 NOT confused by 3' edge to read 358862 - best edge read 405602 len 5547 erate 0.0289 score 5386.69 - alt edge len 3085 erate 0.0354 score 2975.79 - absdiff 2410.90 percdiff 57.6599 tig 229 read 340472 pos 10300-18479 IS confused by 5' edge to read 445355 - best edge read 288312 len 5842 erate 0.0334 score 5646.88 - alt edge len 4244 erate 0.0349 score 4095.88 - absdiff 1550.99 percdiff 31.8389 tig 229 read 288312 pos 12637-19908 NOT confused by 3' edge to read 31753 - best edge read 340472 len 5909 erate 0.0334 score 5711.64 - alt edge len 3147 erate 0.0350 score 3036.86 - absdiff 2674.78 percdiff 61.1485 tig 229 read 288312 pos 12637-19908 NOT confused by 5' edge to read 53069 - best edge read 409917 len 7024 erate 0.0362 score 6769.73 - alt edge len 4317 erate 0.0372 score 4156.41 - absdiff 2613.32 percdiff 47.8362 tig 229 read 288312 pos 12637-19908 NOT confused by 5' edge to read 53070 - best edge read 409917 len 7024 erate 0.0362 score 6769.73 - alt edge len 4328 erate 0.0352 score 4175.65 - absdiff 2594.08 percdiff 47.4004 tig 229 read 288312 pos 12637-19908 NOT confused by 3' edge to read 261237 - best edge read 340472 len 5909 erate 0.0334 score 5711.64 - alt edge len 3416 erate 0.0340 score 3299.86 - absdiff 2411.78 percdiff 53.5268 tig 229 read 288312 pos 12637-19908 NOT confused by 3' edge to read 358859 - best edge read 340472 len 5909 erate 0.0334 score 5711.64 - alt edge len 3351 erate 0.0221 score 3276.94 - absdiff 2434.70 percdiff 54.1731 tig 229 read 288312 pos 12637-19908 NOT confused by 3' edge to read 358861 - best edge read 340472 len 5909 erate 0.0334 score 5711.64 - alt edge len 3474 erate 0.0318 score 3363.53 - absdiff 2348.11 percdiff 51.7481 tig 229 read 288312 pos 12637-19908 NOT confused by 3' edge to read 358862 - best edge read 340472 len 5909 erate 0.0334 score 5711.64 - alt edge len 3600 erate 0.0289 score 3495.96 - absdiff 2215.68 percdiff 48.1272 tig 229 read 288312 pos 12637-19908 IS confused by 5' edge to read 445355 - best edge read 409917 len 7024 erate 0.0362 score 6769.73 - alt edge len 5656 erate 0.0258 score 5510.08 - absdiff 1259.66 percdiff 20.5159 tig 229 read 288312 pos 12637-19908 NOT confused by 3' edge to read 460468 - best edge read 340472 len 5909 erate 0.0334 score 5711.64 - alt edge len 1846 erate 0.0374 score 1776.96 - absdiff 3934.68 percdiff 105.0845 tig 229 read 409917 pos 12884-19967 NOT confused by 5' edge to read 31753 - best edge read 288312 len 7018 erate 0.0426 score 6719.03 - alt edge len 2765 erate 0.0319 score 2676.80 - absdiff 4042.24 percdiff 86.0432 tig 229 read 409917 pos 12884-19967 NOT confused by 5' edge to read 261237 - best edge read 288312 len 7018 erate 0.0426 score 6719.03 - alt edge len 2410 erate 0.0349 score 2325.89 - absdiff 4393.14 percdiff 97.1405 tig 229 read 409917 pos 12884-19967 NOT confused by 5' edge to read 358859 - best edge read 288312 len 7018 erate 0.0426 score 6719.03 - alt edge len 2844 erate 0.0243 score 2774.89 - absdiff 3944.14 percdiff 83.0877 tig 229 read 409917 pos 12884-19967 NOT confused by 5' edge to read 358861 - best edge read 288312 len 7018 erate 0.0426 score 6719.03 - alt edge len 2966 erate 0.0351 score 2861.89 - absdiff 3857.14 percdiff 80.5171 tig 229 read 409917 pos 12884-19967 NOT confused by 5' edge to read 358862 - best edge read 288312 len 7018 erate 0.0426 score 6719.03 - alt edge len 2225 erate 0.0351 score 2146.90 - absdiff 4572.13 percdiff 103.1393 tig 229 read 409917 pos 12884-19967 IS confused by 3' edge to read 445355 - best edge read 424802 len 5773 erate 0.0393 score 5546.12 - alt edge len 5729 erate 0.0353 score 5526.77 - absdiff 19.35 percdiff 0.3496 tig 229 read 409917 pos 12884-19967 NOT confused by 5' edge to read 460468 - best edge read 288312 len 7018 erate 0.0426 score 6719.03 - alt edge len 2079 erate 0.0357 score 2004.78 - absdiff 4714.25 percdiff 108.0778 tig 229 read 409917 pos 12884-19967 NOT confused by 5' edge to read 460469 - best edge read 288312 len 7018 erate 0.0426 score 6719.03 - alt edge len 1833 erate 0.0355 score 1767.93 - absdiff 4951.10 percdiff 116.6756 tig 229 read 424802 pos 14194-25739 NOT confused by 5' edge to read 409373 - best edge read 497523 len 9077 erate 0.0102 score 8984.41 - alt edge len 1455 erate 0.0180 score 1428.81 - absdiff 7555.60 percdiff 145.1156 tig 229 read 424802 pos 14194-25739 NOT confused by 5' edge to read 409374 - best edge read 497523 len 9077 erate 0.0102 score 8984.41 - alt edge len 1426 erate 0.0255 score 1389.64 - absdiff 7594.78 percdiff 146.4187 tig 229 read 497523 pos 16662-25835 NOT confused by 3' edge to read 144908 - best edge read 424802 len 9049 erate 0.0102 score 8956.70 - alt edge len 6017 erate 0.0143 score 5930.96 - absdiff 3025.74 percdiff 40.6477 tig 229 read 497523 pos 16662-25835 NOT confused by 5' edge to read 409373 - best edge read 527724 len 8515 erate 0.0263 score 8291.06 - alt edge len 1575 erate 0.0217 score 1540.82 - absdiff 6750.23 percdiff 137.3132 tig 229 read 497523 pos 16662-25835 NOT confused by 5' edge to read 409374 - best edge read 527724 len 8515 erate 0.0263 score 8291.06 - alt edge len 1546 erate 0.0293 score 1500.70 - absdiff 6790.35 percdiff 138.6953 tig 229 read 527724 pos 17320-26212 NOT confused by 5' edge to read 144908 - best edge read 497523 len 8546 erate 0.0262 score 8322.09 - alt edge len 5367 erate 0.0307 score 5202.23 - absdiff 3119.86 percdiff 46.1370 tig 229 read 290220 pos 17621-29657 NOT confused by 5' edge to read 31753 - best edge read 52555 len 6139 erate 0.0393 score 5897.74 - alt edge len 2925 erate 0.0358 score 2820.28 - absdiff 3077.45 percdiff 70.5998 tig 229 read 290220 pos 17621-29657 NOT confused by 3' edge to read 144908 - best edge read 527724 len 8566 erate 0.0329 score 8284.18 - alt edge len 5079 erate 0.0230 score 4962.18 - absdiff 3322.00 percdiff 50.1571 tig 229 read 290220 pos 17621-29657 NOT confused by 5' edge to read 358859 - best edge read 52555 len 6139 erate 0.0393 score 5897.74 - alt edge len 2505 erate 0.0245 score 2443.63 - absdiff 3454.11 percdiff 82.8188 tig 229 read 290220 pos 17621-29657 NOT confused by 5' edge to read 358861 - best edge read 52555 len 6139 erate 0.0393 score 5897.74 - alt edge len 3000 erate 0.0336 score 2899.20 - absdiff 2998.54 percdiff 68.1723 tig 229 read 290220 pos 17621-29657 NOT confused by 5' edge to read 405602 - best edge read 52555 len 6139 erate 0.0393 score 5897.74 - alt edge len 2768 erate 0.0273 score 2692.43 - absdiff 3205.30 percdiff 74.6272 saved region 4264:35724 - 8 best edges are potentially confused break tig 229 into up to 2 pieces: 0 3764 unique (length 3764) 3764 35724 repeat (length 31960) Creating Unitig 90679 Creating Unitig 90680 For tig 229 unique region 0 3764 - 0/ 11 reads repeat/unique - unitig 90679 created. For tig 229 repeat region 3764 35724 - 225/ 0 reads repeat/unique - unitig 90680 created. Annotating repeats in reads for tig 236/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 5403:7300 - contained in read 379588 1706- 8431 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 248/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 10632:12207 - contained in read 47520 7898- 18624 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 249/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 5804:11184 - contained in read 41587 5075- 12074 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 251/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12279:13229 - closest read 313138 ( +133) 12146:19702 ( +6473) (contained) saved region 12279:13229 - closest 5' read 313138 ( +133) 12146:19702 ( +6473) saved region 12279:13229 - closest 3' read 313138 ( +133) 12146:19702 ( +6473) search for confused edges: discard region 12279:13229 - no confusion in best edges Annotating repeats in reads for tig 252/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13024:13912 - contained in read 18941 7536- 13912 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 253/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 2662:6698 - contained in read 301512 813- 7284 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 254/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5566:6480 - closest 5' read 398203 ( +5173) 393:6477 ( -3) saved region 5566:6480 - closest 3' read 120985 ( -4) 5570:13878 ( +7398) saved region 12255:13970 - closest 5' read 120984 ( +6668) 5587:13947 ( -23) saved region 12255:13970 - closest 3' read 163516 ( -394) 12649:15735 ( +1765) saved region 15645:17284 - closest read 231755 ( +2182) 13463:17287 ( +3) (contained) saved region 15645:17284 - closest 5' read 231755 ( +2182) 13463:17287 ( +3) saved region 15645:17284 - closest 3' read 231755 ( +2182) 13463:17287 ( +3) search for confused edges: tig 254 read 120985 pos 5570-13878 IS confused by 3' edge to read 27290 - best edge read 398203 len 907 erate 0.0430 score 868.00 - alt edge len 902 erate 0.0222 score 881.98 - absdiff 13.98 percdiff 1.5973 saved region 5566:6480 - 1 best edges are potentially confused discard region 12255:13970 - no confusion in best edges discard region 15645:17284 - no confusion in best edges break tig 254 into up to 3 pieces: 0 5066 unique (length 5066) 5066 6980 repeat (length 1914) 6980 21934 unique (length 14954) Creating Unitig 90681 Creating Unitig 90682 For tig 254 unique region 0 5066 - 0/ 6 reads repeat/unique - unitig 90681 created. For tig 254 repeat region 5066 6980 - 0/ 0 repeat/unique reads - no new unitig created. For tig 254 unique region 6980 21934 - 0/ 8 reads repeat/unique - unitig 90682 created. Annotating repeats in reads for tig 255/90584. Annotated with 93 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1638:11295 - closest 5' read 222667 ( +1638) 0:9637 ( -1658) saved region 1638:11295 - closest 3' read 452358 ( -3527) 5165:11884 ( +589) saved region 12219:16764 - closest 5' read 275432 ( +4517) 7702:13279 ( -3485) saved region 12219:16764 - closest 3' read 174150 ( -302) 12521:16764 ( +0) search for confused edges: tig 255 read 222667 pos 0-9637 NOT confused by 5' edge to read 291815 - best edge read 104924 len 5365 erate 0.0112 score 5304.91 - alt edge len 1987 erate 0.0296 score 1928.18 - absdiff 3376.73 percdiff 93.3688 tig 255 read 222667 pos 0-9637 NOT confused by 5' edge to read 291816 - best edge read 104924 len 5365 erate 0.0112 score 5304.91 - alt edge len 1969 erate 0.0292 score 1911.51 - absdiff 3393.41 percdiff 94.0469 tig 255 read 104923 pos 4257-9883 NOT confused by 5' edge to read 291815 - best edge read 452358 len 4766 erate 0.0251 score 4646.37 - alt edge len 2230 erate 0.0299 score 2163.32 - absdiff 2483.05 percdiff 72.9269 tig 255 read 104923 pos 4257-9883 NOT confused by 5' edge to read 291816 - best edge read 452358 len 4766 erate 0.0251 score 4646.37 - alt edge len 2212 erate 0.0273 score 2151.61 - absdiff 2494.76 percdiff 73.3971 tig 255 read 104923 pos 4257-9883 NOT confused by 5' edge to read 530014 - best edge read 452358 len 4766 erate 0.0251 score 4646.37 - alt edge len 2211 erate 0.0435 score 2114.82 - absdiff 2531.55 percdiff 74.8847 tig 255 read 104924 pos 4267-9832 NOT confused by 3' edge to read 291815 - best edge read 104923 len 5564 erate 0.0144 score 5483.88 - alt edge len 2184 erate 0.0357 score 2106.03 - absdiff 3377.85 percdiff 89.0089 tig 255 read 104924 pos 4267-9832 NOT confused by 3' edge to read 291816 - best edge read 104923 len 5564 erate 0.0144 score 5483.88 - alt edge len 2166 erate 0.0331 score 2094.31 - absdiff 3389.57 percdiff 89.4561 discard region 1638:11295 - no confusion in best edges discard region 12219:16764 - no confusion in best edges Annotating repeats in reads for tig 256/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 16027:19305 - contained in read 30731 12217- 19337 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 260/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 263/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 265/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 9003:13269 - contained in read 293329 4618- 13907 thickest edges to the repeat regions: saved region 3633:8366 - closest read 76835 ( +7) 3626:8749 ( +383) (contained) saved region 3633:8366 - closest 5' read 76835 ( +7) 3626:8749 ( +383) saved region 3633:8366 - closest 3' read 76835 ( +7) 3626:8749 ( +383) search for confused edges: discard region 3633:8366 - no confusion in best edges Annotating repeats in reads for tig 266/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 267/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8157:19096 - closest 5' read 369222 ( +3545) 4612:14719 ( -4377) saved region 8157:19096 - closest 3' read 241384 ( -4063) 12220:21470 ( +2374) search for confused edges: tig 267 read 241384 pos 12220-21470 IS confused by 3' edge to read 271503 - best edge read 289144 len 3961 erate 0.0187 score 3886.93 - alt edge len 3588 erate 0.0178 score 3524.13 - absdiff 362.80 percdiff 9.7907 saved region 8157:19096 - 1 best edges are potentially confused break tig 267 into up to 3 pieces: 0 7657 unique (length 7657) 7657 19596 repeat (length 11939) 19596 31182 unique (length 11586) Creating Unitig 90683 Creating Unitig 90684 Creating Unitig 90685 For tig 267 unique region 0 7657 - 0/ 17 reads repeat/unique - unitig 90683 created. For tig 267 repeat region 7657 19596 - 12/ 0 reads repeat/unique - unitig 90684 created. For tig 267 unique region 19596 31182 - 0/ 36 reads repeat/unique - unitig 90685 created. Annotating repeats in reads for tig 269/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8267 - closest 5' read 241289 ( +0) 0:5712 ( -2555) saved region 0:8267 - closest 3' read 143352 ( -4759) 4759:8794 ( +527) search for confused edges: tig 269 read 241289 pos 0-5712 IS confused by 3' edge to read 428250 - best edge read 241290 len 4255 erate 0.0223 score 4160.11 - alt edge len 2524 erate 0.0409 score 2420.77 - absdiff 1739.35 percdiff 52.8605 tig 269 read 241290 pos 1445-5744 IS confused by 5' edge to read 428250 - best edge read 7201 len 3347 erate 0.0153 score 3295.79 - alt edge len 2557 erate 0.0294 score 2481.82 - absdiff 813.97 percdiff 28.1766 tig 269 read 241290 pos 1445-5744 IS confused by 5' edge to read 433055 - best edge read 7201 len 3347 erate 0.0153 score 3295.79 - alt edge len 2261 erate 0.0309 score 2191.14 - absdiff 1104.66 percdiff 40.2650 tig 269 read 7201 pos 2407-6252 IS confused by 5' edge to read 428250 - best edge read 7202 len 3832 erate 0.0167 score 3768.01 - alt edge len 3057 erate 0.0321 score 2958.87 - absdiff 809.14 percdiff 24.0568 tig 269 read 7201 pos 2407-6252 IS confused by 5' edge to read 433055 - best edge read 7202 len 3832 erate 0.0167 score 3768.01 - alt edge len 2762 erate 0.0321 score 2673.34 - absdiff 1094.67 percdiff 33.9887 tig 269 read 7202 pos 2422-7357 NOT confused by 5' edge to read 415169 - best edge read 408665 len 4604 erate 0.0220 score 4502.71 - alt edge len 1415 erate 0.0226 score 1383.02 - absdiff 3119.69 percdiff 106.0086 tig 269 read 7202 pos 2422-7357 IS confused by 5' edge to read 428250 - best edge read 408665 len 4604 erate 0.0220 score 4502.71 - alt edge len 4163 erate 0.0310 score 4033.95 - absdiff 468.76 percdiff 10.9824 tig 269 read 7202 pos 2422-7357 IS confused by 5' edge to read 433055 - best edge read 408665 len 4604 erate 0.0220 score 4502.71 - alt edge len 3869 erate 0.0324 score 3743.64 - absdiff 759.07 percdiff 18.4098 saved region 0:8267 - 7 best edges are potentially confused break tig 269 into up to 2 pieces: 0 8767 repeat (length 8767) 8767 8794 unique (length 27) Creating Unitig 90686 Creating Unitig 90687 For tig 269 repeat region 0 8767 - 21/ 0 reads repeat/unique - unitig 90686 created. For tig 269 unique region 8767 8794 - 0/ 1 reads repeat/unique - unitig 90687 created. Annotating repeats in reads for tig 270/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 12973:15291 - contained in read 70913 8919- 16965 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 271/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 1394:1953 - contained in read 440168 0- 5810 discard region 5302:8741 - contained in read 217403 4333- 9619 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 274/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 275/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11835:12341 - closest read 486666 ( +5551) 6284:12361 ( +20) (contained) saved region 11835:12341 - closest read 486670 ( +5546) 6289:12349 ( +8) (contained) saved region 11835:12341 - closest read 486665 ( +5229) 6606:12372 ( +31) (contained) saved region 11835:12341 - closest read 362818 ( +0) 11835:20053 ( +7712) (contained) saved region 11835:12341 - closest 5' read 362818 ( +0) 11835:20053 ( +7712) saved region 11835:12341 - closest 3' read 486666 ( +5551) 6284:12361 ( +20) saved region 18993:20272 - closest 5' read 66486 ( +7137) 11856:20182 ( -90) saved region 18993:20272 - closest 3' read 496207 ( -1) 18994:23788 ( +3516) search for confused edges: tig 275 read 66486 pos 11856-20182 IS confused by 3' edge to read 265810 - best edge read 325133 len 1132 erate 0.0345 score 1092.95 - alt edge len 540 erate 0.0259 score 526.01 - absdiff 566.93 percdiff 70.0366 discard region 11835:12341 - no confusion in best edges saved region 18993:20272 - 1 best edges are potentially confused break tig 275 into up to 3 pieces: 0 18493 unique (length 18493) 18493 20772 repeat (length 2279) 20772 25040 unique (length 4268) Creating Unitig 90688 Creating Unitig 90689 For tig 275 unique region 0 18493 - 0/ 21 reads repeat/unique - unitig 90688 created. For tig 275 repeat region 18493 20772 - 0/ 0 repeat/unique reads - no new unitig created. For tig 275 unique region 20772 25040 - 0/ 9 reads repeat/unique - unitig 90689 created. Annotating repeats in reads for tig 277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 278/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 279/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 4882:8700 - contained in read 320278 1106- 10542 discard region 11323:12957 - contained in read 205124 3151- 14546 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 280/90584. Annotated with 71 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 15824:25280 - closest 5' read 396919 ( +2341) 13483:20068 ( -5212) saved region 15824:25280 - closest 3' read 50447 ( -7429) 23253:28674 ( +3394) search for confused edges: tig 280 read 396919 pos 13483-20068 IS confused by 3' edge to read 61174 - best edge read 21228 len 1090 erate 0.0387 score 1047.82 - alt edge len 1048 erate 0.0288 score 1017.82 - absdiff 30.00 percdiff 2.9046 tig 280 read 396919 pos 13483-20068 IS confused by 3' edge to read 362177 - best edge read 21228 len 1090 erate 0.0387 score 1047.82 - alt edge len 927 erate 0.0305 score 898.73 - absdiff 149.09 percdiff 15.3185 tig 280 read 396919 pos 13483-20068 IS confused by 3' edge to read 362178 - best edge read 21228 len 1090 erate 0.0387 score 1047.82 - alt edge len 1017 erate 0.0419 score 974.39 - absdiff 73.43 percdiff 7.2623 tig 280 read 50447 pos 23253-28674 IS confused by 3' edge to read 21227 - best edge read 21228 len 1965 erate 0.0270 score 1911.94 - alt edge len 1964 erate 0.0300 score 1905.08 - absdiff 6.87 percdiff 0.3597 tig 280 read 50447 pos 23253-28674 IS confused by 3' edge to read 398472 - best edge read 21228 len 1965 erate 0.0270 score 1911.94 - alt edge len 1764 erate 0.0289 score 1713.02 - absdiff 198.92 percdiff 10.9753 saved region 15824:25280 - 5 best edges are potentially confused break tig 280 into up to 3 pieces: 0 15324 unique (length 15324) 15324 25780 repeat (length 10456) 25780 28674 unique (length 2894) Creating Unitig 90690 Creating Unitig 90691 Creating Unitig 90692 For tig 280 unique region 0 15324 - 0/ 36 reads repeat/unique - unitig 90690 created. For tig 280 repeat region 15324 25780 - 19/ 0 reads repeat/unique - unitig 90691 created. For tig 280 unique region 25780 28674 - 0/ 1 reads repeat/unique - unitig 90692 created. Annotating repeats in reads for tig 282/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:2341 - contained in read 21855 0- 5200 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 286/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 17212:17761 - contained in read 359416 13609- 22188 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 295/90584. Annotated with 65 overlaps. Scan reads to discard spanned repeats. discard region 6256:7387 - contained in read 467700 1260- 7387 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 298/90584. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 6445:7355 - contained in read 161683 1914- 8208 thickest edges to the repeat regions: saved region 7630:16393 - closest 5' read 303274 ( +62) 7568:14862 ( -1531) saved region 7630:16393 - closest 3' read 48824 ( -3053) 10683:19946 ( +3553) saved region 17419:22513 - closest read 295940 ( +2654) 14765:22605 ( +92) (contained) saved region 17419:22513 - closest 5' read 295940 ( +2654) 14765:22605 ( +92) saved region 17419:22513 - closest 3' read 295940 ( +2654) 14765:22605 ( +92) search for confused edges: tig 298 read 303274 pos 7568-14862 NOT confused by 3' edge to read 169142 - best edge read 375151 len 7187 erate 0.0113 score 7105.79 - alt edge len 1611 erate 0.0143 score 1587.96 - absdiff 5517.82 percdiff 126.9377 tig 298 read 303274 pos 7568-14862 NOT confused by 3' edge to read 169144 - best edge read 375151 len 7187 erate 0.0113 score 7105.79 - alt edge len 1601 erate 0.0157 score 1575.86 - absdiff 5529.92 percdiff 127.3933 tig 298 read 303274 pos 7568-14862 NOT confused by 3' edge to read 290086 - best edge read 375151 len 7187 erate 0.0113 score 7105.79 - alt edge len 1679 erate 0.0221 score 1641.89 - absdiff 5463.89 percdiff 124.9221 tig 298 read 303274 pos 7568-14862 NOT confused by 3' edge to read 290089 - best edge read 375151 len 7187 erate 0.0113 score 7105.79 - alt edge len 1671 erate 0.0282 score 1623.88 - absdiff 5481.91 percdiff 125.5927 tig 298 read 303274 pos 7568-14862 IS confused by 3' edge to read 510605 - best edge read 375151 len 7187 erate 0.0113 score 7105.79 - alt edge len 6444 erate 0.0131 score 6359.58 - absdiff 746.20 percdiff 11.0833 tig 298 read 375151 pos 7674-15261 NOT confused by 5' edge to read 169142 - best edge read 303275 len 7574 erate 0.0075 score 7517.20 - alt edge len 2011 erate 0.0085 score 1993.91 - absdiff 5523.29 percdiff 116.1440 tig 298 read 375151 pos 7674-15261 NOT confused by 5' edge to read 169144 - best edge read 303275 len 7574 erate 0.0075 score 7517.20 - alt edge len 2001 erate 0.0130 score 1974.99 - absdiff 5542.21 percdiff 116.7742 tig 298 read 375151 pos 7674-15261 NOT confused by 3' edge to read 243080 - best edge read 303274 len 7188 erate 0.0113 score 7106.78 - alt edge len 2777 erate 0.0173 score 2728.96 - absdiff 4377.82 percdiff 89.0186 tig 298 read 375151 pos 7674-15261 NOT confused by 3' edge to read 243081 - best edge read 303274 len 7188 erate 0.0113 score 7106.78 - alt edge len 2780 erate 0.0217 score 2719.67 - absdiff 4387.10 percdiff 89.2917 tig 298 read 375151 pos 7674-15261 NOT confused by 5' edge to read 290086 - best edge read 303275 len 7574 erate 0.0075 score 7517.20 - alt edge len 2079 erate 0.0169 score 2043.86 - absdiff 5473.33 percdiff 114.4921 tig 298 read 375151 pos 7674-15261 NOT confused by 5' edge to read 290089 - best edge read 303275 len 7574 erate 0.0075 score 7517.20 - alt edge len 2071 erate 0.0218 score 2025.85 - absdiff 5491.34 percdiff 115.0857 tig 298 read 375151 pos 7674-15261 NOT confused by 3' edge to read 343278 - best edge read 303274 len 7188 erate 0.0113 score 7106.78 - alt edge len 1054 erate 0.0287 score 1023.75 - absdiff 6083.03 percdiff 149.6342 tig 298 read 375151 pos 7674-15261 IS confused by 3' edge to read 421148 - best edge read 303274 len 7188 erate 0.0113 score 7106.78 - alt edge len 7026 erate 0.0098 score 6957.15 - absdiff 149.63 percdiff 2.1279 tig 298 read 375151 pos 7674-15261 NOT confused by 3' edge to read 495051 - best edge read 303274 len 7188 erate 0.0113 score 7106.78 - alt edge len 635 erate 0.0283 score 617.03 - absdiff 6489.75 percdiff 168.0453 tig 298 read 375151 pos 7674-15261 IS confused by 5' edge to read 510605 - best edge read 303275 len 7574 erate 0.0075 score 7517.20 - alt edge len 6841 erate 0.0147 score 6740.44 - absdiff 776.76 percdiff 10.8960 tig 298 read 303275 pos 7691-15434 NOT confused by 3' edge to read 243080 - best edge read 375151 len 7570 erate 0.0075 score 7513.23 - alt edge len 2762 erate 0.0196 score 2707.86 - absdiff 4805.36 percdiff 94.0283 tig 298 read 303275 pos 7691-15434 NOT confused by 3' edge to read 243081 - best edge read 375151 len 7570 erate 0.0075 score 7513.23 - alt edge len 2765 erate 0.0236 score 2699.75 - absdiff 4813.48 percdiff 94.2621 tig 298 read 303275 pos 7691-15434 NOT confused by 3' edge to read 343278 - best edge read 375151 len 7570 erate 0.0075 score 7513.23 - alt edge len 1039 erate 0.0281 score 1009.80 - absdiff 6503.42 percdiff 152.6082 tig 298 read 303275 pos 7691-15434 IS confused by 3' edge to read 421148 - best edge read 375151 len 7570 erate 0.0075 score 7513.23 - alt edge len 7013 erate 0.0116 score 6931.65 - absdiff 581.58 percdiff 8.0523 tig 298 read 303275 pos 7691-15434 NOT confused by 3' edge to read 495051 - best edge read 375151 len 7570 erate 0.0075 score 7513.23 - alt edge len 622 erate 0.0257 score 606.01 - absdiff 6907.21 percdiff 170.1443 tig 298 read 371695 pos 13572-20895 IS confused by 5' edge to read 421148 - best edge read 303275 len 1862 erate 0.0161 score 1832.02 - alt edge len 1134 erate 0.0141 score 1118.01 - absdiff 714.01 percdiff 48.4070 saved region 7630:16393 - 5 best edges are potentially confused discard region 17419:22513 - no confusion in best edges break tig 298 into up to 3 pieces: 0 7130 unique (length 7130) 7130 16893 repeat (length 9763) 16893 27910 unique (length 11017) Creating Unitig 90693 Creating Unitig 90694 Creating Unitig 90695 For tig 298 unique region 0 7130 - 0/ 11 reads repeat/unique - unitig 90693 created. For tig 298 repeat region 7130 16893 - 39/ 0 reads repeat/unique - unitig 90694 created. For tig 298 unique region 16893 27910 - 0/ 16 reads repeat/unique - unitig 90695 created. Annotating repeats in reads for tig 301/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 16269:18218 - contained in read 291438 13140- 19198 discard region 19541:25045 - contained in read 444829 14387- 27608 thickest edges to the repeat regions: saved region 9442:11960 - closest read 400268 ( +3799) 5643:11965 ( +5) (contained) saved region 9442:11960 - closest read 400271 ( +3793) 5649:11978 ( +18) (contained) saved region 9442:11960 - closest read 400270 ( +3787) 5655:11974 ( +14) (contained) saved region 9442:11960 - closest 5' read 400271 ( +3793) 5649:11978 ( +18) saved region 9442:11960 - closest 3' read 400268 ( +3799) 5643:11965 ( +5) search for confused edges: tig 301 read 267575 pos 9455-15695 IS confused by 3' edge to read 83498 - best edge read 400268 len 2495 erate 0.0377 score 2400.94 - alt edge len 2361 erate 0.0390 score 2268.92 - absdiff 132.02 percdiff 5.6540 tig 301 read 267575 pos 9455-15695 IS confused by 3' edge to read 83500 - best edge read 400268 len 2495 erate 0.0377 score 2400.94 - alt edge len 2353 erate 0.0370 score 2265.94 - absdiff 135.00 percdiff 5.7854 saved region 9442:11960 - 2 best edges are potentially confused break tig 301 into up to 3 pieces: 0 8942 unique (length 8942) 8942 12460 repeat (length 3518) 12460 27608 unique (length 15148) Creating Unitig 90696 Creating Unitig 90697 Creating Unitig 90698 For tig 301 unique region 0 8942 - 0/ 20 reads repeat/unique - unitig 90696 created. For tig 301 repeat region 8942 12460 - 6/ 0 reads repeat/unique - unitig 90697 created. For tig 301 unique region 12460 27608 - 0/ 37 reads repeat/unique - unitig 90698 created. Annotating repeats in reads for tig 304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 306/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 317/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 4:2923 - contained in read 343897 0- 8719 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 321/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 0:4346 - contained in read 520235 0- 5873 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 325/90584. Annotated with 652 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:16263 - closest 5' read 9087 ( +0) 0:5152 (-11111) saved region 0:16263 - closest 3' read 144908 ( -6585) 6585:16263 ( +0) search for confused edges: tig 325 read 9087 pos 0-5152 IS confused by 3' edge to read 83968 - best edge read 368677 len 5013 erate 0.0319 score 4853.09 - alt edge len 3619 erate 0.0305 score 3508.62 - absdiff 1344.46 percdiff 32.1577 tig 325 read 9087 pos 0-5152 IS confused by 3' edge to read 83970 - best edge read 368677 len 5013 erate 0.0319 score 4853.09 - alt edge len 3374 erate 0.0291 score 3275.82 - absdiff 1577.27 percdiff 38.8064 tig 325 read 9087 pos 0-5152 IS confused by 3' edge to read 83971 - best edge read 368677 len 5013 erate 0.0319 score 4853.09 - alt edge len 3619 erate 0.0327 score 3500.66 - absdiff 1352.43 percdiff 32.3789 tig 325 read 368677 pos 139-7134 IS confused by 3' edge to read 83968 - best edge read 343460 len 6172 erate 0.0217 score 6038.07 - alt edge len 5586 erate 0.0249 score 5446.91 - absdiff 591.16 percdiff 10.2945 tig 325 read 368677 pos 139-7134 IS confused by 3' edge to read 83970 - best edge read 343460 len 6172 erate 0.0217 score 6038.07 - alt edge len 5339 erate 0.0236 score 5213.00 - absdiff 825.07 percdiff 14.6665 tig 325 read 368677 pos 139-7134 IS confused by 3' edge to read 83971 - best edge read 343460 len 6172 erate 0.0217 score 6038.07 - alt edge len 5586 erate 0.0258 score 5441.88 - absdiff 596.19 percdiff 10.3866 tig 325 read 343460 pos 962-7313 NOT confused by 3' edge to read 31753 - best edge read 368677 len 6218 erate 0.0217 score 6083.07 - alt edge len 1678 erate 0.0348 score 1619.61 - absdiff 4463.46 percdiff 115.8939 tig 325 read 343460 pos 962-7313 IS confused by 5' edge to read 83968 - best edge read 298407 len 6022 erate 0.0118 score 5950.94 - alt edge len 5761 erate 0.0215 score 5637.14 - absdiff 313.80 percdiff 5.4159 tig 325 read 343460 pos 962-7313 IS confused by 5' edge to read 83970 - best edge read 298407 len 6022 erate 0.0118 score 5950.94 - alt edge len 5512 erate 0.0182 score 5411.68 - absdiff 539.26 percdiff 9.4918 tig 325 read 343460 pos 962-7313 IS confused by 5' edge to read 83971 - best edge read 298407 len 6022 erate 0.0118 score 5950.94 - alt edge len 5761 erate 0.0221 score 5633.68 - absdiff 317.26 percdiff 5.4772 tig 325 read 343460 pos 962-7313 NOT confused by 3' edge to read 261237 - best edge read 368677 len 6218 erate 0.0217 score 6083.07 - alt edge len 830 erate 0.0413 score 795.72 - absdiff 5287.35 percdiff 153.7290 tig 325 read 343460 pos 962-7313 NOT confused by 3' edge to read 326003 - best edge read 368677 len 6218 erate 0.0217 score 6083.07 - alt edge len 1564 erate 0.0382 score 1504.26 - absdiff 4578.81 percdiff 120.6964 tig 325 read 343460 pos 962-7313 NOT confused by 3' edge to read 358859 - best edge read 368677 len 6218 erate 0.0217 score 6083.07 - alt edge len 1384 erate 0.0327 score 1338.74 - absdiff 4744.33 percdiff 127.8482 tig 325 read 343460 pos 962-7313 NOT confused by 3' edge to read 358861 - best edge read 368677 len 6218 erate 0.0217 score 6083.07 - alt edge len 639 erate 0.0377 score 614.91 - absdiff 5468.16 percdiff 163.2779 tig 325 read 343460 pos 962-7313 NOT confused by 3' edge to read 358862 - best edge read 368677 len 6218 erate 0.0217 score 6083.07 - alt edge len 641 erate 0.0346 score 618.82 - absdiff 5464.25 percdiff 163.0659 tig 325 read 343460 pos 962-7313 NOT confused by 3' edge to read 405602 - best edge read 368677 len 6218 erate 0.0217 score 6083.07 - alt edge len 1769 erate 0.0353 score 1706.55 - absdiff 4376.52 percdiff 112.3678 tig 325 read 343460 pos 962-7313 NOT confused by 3' edge to read 460468 - best edge read 368677 len 6218 erate 0.0217 score 6083.07 - alt edge len 1981 erate 0.0394 score 1902.95 - absdiff 4180.12 percdiff 104.6860 tig 325 read 298407 pos 1291-7350 NOT confused by 5' edge to read 31753 - best edge read 343460 len 6015 erate 0.0118 score 5944.02 - alt edge len 1353 erate 0.0290 score 1313.76 - absdiff 4630.26 percdiff 127.5943 tig 325 read 298407 pos 1291-7350 NOT confused by 5' edge to read 79636 - best edge read 343460 len 6015 erate 0.0118 score 5944.02 - alt edge len 1823 erate 0.0437 score 1743.33 - absdiff 4200.69 percdiff 109.2882 tig 325 read 298407 pos 1291-7350 IS confused by 3' edge to read 83968 - best edge read 298404 len 6057 erate 0.0098 score 5997.64 - alt edge len 5797 erate 0.0194 score 5684.54 - absdiff 313.10 percdiff 5.3604 tig 325 read 298407 pos 1291-7350 IS confused by 3' edge to read 83970 - best edge read 298404 len 6057 erate 0.0098 score 5997.64 - alt edge len 5550 erate 0.0168 score 5456.76 - absdiff 540.88 percdiff 9.4441 tig 325 read 298407 pos 1291-7350 IS confused by 3' edge to read 83971 - best edge read 298404 len 6057 erate 0.0098 score 5997.64 - alt edge len 5797 erate 0.0207 score 5677.00 - absdiff 320.64 percdiff 5.4929 tig 325 read 298407 pos 1291-7350 NOT confused by 5' edge to read 326003 - best edge read 343460 len 6015 erate 0.0118 score 5944.02 - alt edge len 1363 erate 0.0357 score 1314.34 - absdiff 4629.68 percdiff 127.5682 tig 325 read 298407 pos 1291-7350 NOT confused by 5' edge to read 358859 - best edge read 343460 len 6015 erate 0.0118 score 5944.02 - alt edge len 1183 erate 0.0230 score 1155.79 - absdiff 4788.23 percdiff 134.8833 tig 325 read 298407 pos 1291-7350 NOT confused by 5' edge to read 358861 - best edge read 343460 len 6015 erate 0.0118 score 5944.02 - alt edge len 806 erate 0.0336 score 778.92 - absdiff 5165.10 percdiff 153.6561 tig 325 read 298407 pos 1291-7350 NOT confused by 5' edge to read 358862 - best edge read 343460 len 6015 erate 0.0118 score 5944.02 - alt edge len 808 erate 0.0335 score 780.93 - absdiff 5163.09 percdiff 153.5502 tig 325 read 298407 pos 1291-7350 NOT confused by 5' edge to read 405602 - best edge read 343460 len 6015 erate 0.0118 score 5944.02 - alt edge len 1688 erate 0.0304 score 1636.68 - absdiff 4307.34 percdiff 113.6395 tig 325 read 298407 pos 1291-7350 NOT confused by 5' edge to read 460468 - best edge read 343460 len 6015 erate 0.0118 score 5944.02 - alt edge len 1284 erate 0.0375 score 1235.85 - absdiff 4708.17 percdiff 131.1492 tig 325 read 298404 pos 1293-7354 NOT confused by 3' edge to read 31753 - best edge read 298407 len 6056 erate 0.0098 score 5996.65 - alt edge len 1342 erate 0.0246 score 1308.99 - absdiff 4687.66 percdiff 128.3300 tig 325 read 298404 pos 1293-7354 IS confused by 5' edge to read 83968 - best edge read 298406 len 6060 erate 0.0103 score 5997.58 - alt edge len 5803 erate 0.0183 score 5696.81 - absdiff 300.78 percdiff 5.1440 tig 325 read 298404 pos 1293-7354 IS confused by 5' edge to read 83970 - best edge read 298406 len 6060 erate 0.0103 score 5997.58 - alt edge len 5556 erate 0.0159 score 5467.66 - absdiff 529.92 percdiff 9.2440 tig 325 read 298404 pos 1293-7354 IS confused by 5' edge to read 83971 - best edge read 298406 len 6060 erate 0.0103 score 5997.58 - alt edge len 5803 erate 0.0200 score 5686.94 - absdiff 310.64 percdiff 5.3172 tig 325 read 298404 pos 1293-7354 NOT confused by 3' edge to read 261237 - best edge read 298407 len 6056 erate 0.0098 score 5996.65 - alt edge len 620 erate 0.0306 score 601.03 - absdiff 5395.62 percdiff 163.5612 tig 325 read 298404 pos 1293-7354 NOT confused by 3' edge to read 326003 - best edge read 298407 len 6056 erate 0.0098 score 5996.65 - alt edge len 1475 erate 0.0334 score 1425.74 - absdiff 4570.92 percdiff 123.1657 tig 325 read 298404 pos 1293-7354 NOT confused by 3' edge to read 358859 - best edge read 298407 len 6056 erate 0.0098 score 5996.65 - alt edge len 1172 erate 0.0213 score 1147.04 - absdiff 4849.61 percdiff 135.7734 tig 325 read 298404 pos 1293-7354 NOT confused by 3' edge to read 358861 - best edge read 298407 len 6056 erate 0.0098 score 5996.65 - alt edge len 1542 erate 0.0351 score 1487.88 - absdiff 4508.78 percdiff 120.4826 tig 325 read 298404 pos 1293-7354 NOT confused by 3' edge to read 358862 - best edge read 298407 len 6056 erate 0.0098 score 5996.65 - alt edge len 1420 erate 0.0352 score 1370.02 - absdiff 4626.64 percdiff 125.6100 tig 325 read 298404 pos 1293-7354 NOT confused by 3' edge to read 405602 - best edge read 298407 len 6056 erate 0.0098 score 5996.65 - alt edge len 1680 erate 0.0257 score 1636.82 - absdiff 4359.83 percdiff 114.2292 tig 325 read 298404 pos 1293-7354 NOT confused by 3' edge to read 460468 - best edge read 298407 len 6056 erate 0.0098 score 5996.65 - alt edge len 1768 erate 0.0311 score 1713.02 - absdiff 4283.64 percdiff 111.1238 tig 325 read 298404 pos 1293-7354 NOT confused by 3' edge to read 460469 - best edge read 298407 len 6056 erate 0.0098 score 5996.65 - alt edge len 780 erate 0.0397 score 749.03 - absdiff 5247.62 percdiff 155.5844 tig 325 read 298406 pos 1294-7376 NOT confused by 3' edge to read 31753 - best edge read 298404 len 6048 erate 0.0103 score 5985.71 - alt edge len 1834 erate 0.0322 score 1774.95 - absdiff 4210.76 percdiff 108.5157 tig 325 read 298406 pos 1294-7376 IS confused by 5' edge to read 83968 - best edge read 469691 len 5857 erate 0.0197 score 5741.62 - alt edge len 5825 erate 0.0196 score 5710.83 - absdiff 30.79 percdiff 0.5377 tig 325 read 298406 pos 1294-7376 IS confused by 5' edge to read 83970 - best edge read 469691 len 5857 erate 0.0197 score 5741.62 - alt edge len 5576 erate 0.0167 score 5482.88 - absdiff 258.74 percdiff 4.6102 tig 325 read 298406 pos 1294-7376 IS confused by 5' edge to read 83971 - best edge read 469691 len 5857 erate 0.0197 score 5741.62 - alt edge len 5825 erate 0.0205 score 5705.59 - absdiff 36.03 percdiff 0.6295 tig 325 read 298406 pos 1294-7376 NOT confused by 3' edge to read 261237 - best edge read 298404 len 6048 erate 0.0103 score 5985.71 - alt edge len 992 erate 0.0303 score 961.94 - absdiff 5023.76 percdiff 144.6177 tig 325 read 298406 pos 1294-7376 NOT confused by 3' edge to read 326003 - best edge read 298404 len 6048 erate 0.0103 score 5985.71 - alt edge len 1844 erate 0.0344 score 1780.57 - absdiff 4205.14 percdiff 108.2923 tig 325 read 298406 pos 1294-7376 NOT confused by 3' edge to read 358861 - best edge read 298404 len 6048 erate 0.0103 score 5985.71 - alt edge len 1787 erate 0.0348 score 1724.81 - absdiff 4260.89 percdiff 110.5216 tig 325 read 298406 pos 1294-7376 NOT confused by 3' edge to read 358862 - best edge read 298404 len 6048 erate 0.0103 score 5985.71 - alt edge len 1420 erate 0.0381 score 1365.90 - absdiff 4619.81 percdiff 125.6816 tig 325 read 298406 pos 1294-7376 NOT confused by 3' edge to read 405602 - best edge read 298404 len 6048 erate 0.0103 score 5985.71 - alt edge len 1677 erate 0.0287 score 1628.87 - absdiff 4356.84 percdiff 114.4341 tig 325 read 298406 pos 1294-7376 NOT confused by 3' edge to read 460468 - best edge read 298404 len 6048 erate 0.0103 score 5985.71 - alt edge len 1766 erate 0.0318 score 1709.84 - absdiff 4275.86 percdiff 111.1257 tig 325 read 298406 pos 1294-7376 NOT confused by 3' edge to read 460469 - best edge read 298404 len 6048 erate 0.0103 score 5985.71 - alt edge len 783 erate 0.0410 score 750.90 - absdiff 5234.81 percdiff 155.4139 tig 325 read 469691 pos 1519-9703 NOT confused by 5' edge to read 31753 - best edge read 298406 len 5844 erate 0.0197 score 5728.87 - alt edge len 1485 erate 0.0345 score 1433.77 - absdiff 4295.11 percdiff 119.9308 tig 325 read 469691 pos 1519-9703 NOT confused by 5' edge to read 261237 - best edge read 298406 len 5844 erate 0.0197 score 5728.87 - alt edge len 1008 erate 0.0379 score 969.80 - absdiff 4759.08 percdiff 142.0902 tig 325 read 469691 pos 1519-9703 NOT confused by 5' edge to read 326003 - best edge read 298406 len 5844 erate 0.0197 score 5728.87 - alt edge len 1496 erate 0.0370 score 1440.65 - absdiff 4288.23 percdiff 119.6238 tig 325 read 469691 pos 1519-9703 NOT confused by 5' edge to read 358859 - best edge read 298406 len 5844 erate 0.0197 score 5728.87 - alt edge len 1563 erate 0.0302 score 1515.80 - absdiff 4213.08 percdiff 116.3083 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 31753 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 2148 erate 0.0304 score 2082.70 - absdiff 6169.75 percdiff 119.3935 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 261237 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 2660 erate 0.0344 score 2568.50 - absdiff 5683.96 percdiff 105.0547 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 288312 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 5640 erate 0.0258 score 5494.49 - absdiff 2757.97 percdiff 40.1248 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 326003 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 2527 erate 0.0322 score 2445.63 - absdiff 5806.82 percdiff 108.5582 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 340472 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 4276 erate 0.0349 score 4126.77 - absdiff 4125.69 percdiff 66.6550 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 358859 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 2719 erate 0.0225 score 2657.82 - absdiff 5594.63 percdiff 102.5571 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 358861 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 1488 erate 0.0345 score 1436.66 - absdiff 6815.79 percdiff 140.6896 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 358862 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 2720 erate 0.0317 score 2633.78 - absdiff 5618.68 percdiff 103.2254 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 405602 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 2732 erate 0.0287 score 2653.59 - absdiff 5598.86 percdiff 102.6745 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 409917 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 5704 erate 0.0353 score 5502.65 - absdiff 2749.81 percdiff 39.9823 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 460468 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 2080 erate 0.0343 score 2008.66 - absdiff 6243.80 percdiff 121.6983 tig 325 read 445355 pos 5535-15030 NOT confused by 5' edge to read 460469 - best edge read 144908 len 8445 erate 0.0228 score 8252.45 - alt edge len 2329 erate 0.0341 score 2249.58 - absdiff 6002.87 percdiff 114.3183 saved region 0:16263 - 18 best edges are potentially confused Annotating repeats in reads for tig 328/90584. Annotated with 320 overlaps. Scan reads to discard spanned repeats. discard region 2120:5619 - contained in read 85434 1188- 7156 thickest edges to the repeat regions: saved region 7657:22789 - closest 5' read 85120 ( +1342) 6315:16741 ( -6048) saved region 7657:22789 - closest 3' read 323217 ( -4985) 12642:22993 ( +204) search for confused edges: tig 328 read 231336 pos 6451-16037 NOT confused by 3' edge to read 327832 - best edge read 450941 len 7230 erate 0.0213 score 7076.00 - alt edge len 688 erate 0.0444 score 657.45 - absdiff 6418.55 percdiff 165.9944 tig 328 read 450941 pos 8807-21663 NOT confused by 3' edge to read 18587 - best edge read 323215 len 9689 erate 0.0179 score 9515.57 - alt edge len 614 erate 0.0361 score 591.83 - absdiff 8923.73 percdiff 176.5782 tig 328 read 323215 pos 11974-22274 NOT confused by 3' edge to read 18587 - best edge read 323217 len 9632 erate 0.0159 score 9478.85 - alt edge len 1632 erate 0.0374 score 1570.96 - absdiff 7907.89 percdiff 143.1316 discard region 7657:22789 - no confusion in best edges Annotating repeats in reads for tig 330/90584. Annotated with 2925 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3042:41594 - closest 5' read 278197 ( +3042) 0:7213 (-34381) saved region 3042:41594 - closest 3' read 21625 (-36239) 39281:44939 ( +3345) search for confused edges: tig 330 read 398554 pos 3424-11559 IS confused by 5' edge to read 21629 - best edge read 299644 len 1662 erate 0.0322 score 1608.48 - alt edge len 571 erate 0.0230 score 557.87 - absdiff 1050.62 percdiff 96.9941 tig 330 read 398554 pos 3424-11559 NOT confused by 3' edge to read 36156 - best edge read 398551 len 8052 erate 0.0228 score 7868.41 - alt edge len 1677 erate 0.0167 score 1648.99 - absdiff 6219.42 percdiff 130.6957 tig 330 read 398554 pos 3424-11559 NOT confused by 3' edge to read 36157 - best edge read 398551 len 8052 erate 0.0228 score 7868.41 - alt edge len 1660 erate 0.0133 score 1637.92 - absdiff 6230.49 percdiff 131.0808 tig 330 read 398551 pos 3505-11476 IS confused by 5' edge to read 36156 - best edge read 278197 len 3708 erate 0.0154 score 3650.90 - alt edge len 1677 erate 0.0197 score 1643.96 - absdiff 2006.93 percdiff 75.8069 tig 330 read 398551 pos 3505-11476 IS confused by 5' edge to read 36157 - best edge read 278197 len 3708 erate 0.0154 score 3650.90 - alt edge len 1659 erate 0.0157 score 1632.95 - absdiff 2017.94 percdiff 76.3815 tig 330 read 299644 pos 9911-21306 NOT confused by 3' edge to read 84358 - best edge read 481638 len 11142 erate 0.0162 score 10961.50 - alt edge len 946 erate 0.0180 score 928.97 - absdiff 10032.53 percdiff 168.7490 tig 330 read 299644 pos 9911-21306 NOT confused by 3' edge to read 84360 - best edge read 481638 len 11142 erate 0.0162 score 10961.50 - alt edge len 894 erate 0.0134 score 882.02 - absdiff 10079.48 percdiff 170.2109 tig 330 read 299644 pos 9911-21306 NOT confused by 3' edge to read 411529 - best edge read 481638 len 11142 erate 0.0162 score 10961.50 - alt edge len 8959 erate 0.0174 score 8803.11 - absdiff 2158.39 percdiff 21.8409 tig 330 read 299644 pos 9911-21306 NOT confused by 3' edge to read 526432 - best edge read 481638 len 11142 erate 0.0162 score 10961.50 - alt edge len 8972 erate 0.0149 score 8838.32 - absdiff 2123.18 percdiff 21.4465 tig 330 read 481638 pos 10120-22058 IS confused by 5' edge to read 411529 - best edge read 114055 len 11667 erate 0.0155 score 11486.16 - alt edge len 9749 erate 0.0096 score 9655.41 - absdiff 1830.75 percdiff 17.3190 tig 330 read 481638 pos 10120-22058 IS confused by 5' edge to read 526432 - best edge read 114055 len 11667 erate 0.0155 score 11486.16 - alt edge len 9763 erate 0.0094 score 9671.23 - absdiff 1814.93 percdiff 17.1565 tig 330 read 142437 pos 12591-33825 NOT confused by 5' edge to read 36156 - best edge read 114055 len 9647 erate 0.0285 score 9372.06 - alt edge len 4293 erate 0.0119 score 4241.91 - absdiff 5130.15 percdiff 75.3659 tig 330 read 142437 pos 12591-33825 NOT confused by 5' edge to read 36157 - best edge read 114055 len 9647 erate 0.0285 score 9372.06 - alt edge len 4275 erate 0.0105 score 4230.11 - absdiff 5141.95 percdiff 75.6048 tig 330 read 484616 pos 18496-37275 NOT confused by 3' edge to read 268625 - best edge read 142437 len 15362 erate 0.0059 score 15271.36 - alt edge len 966 erate 0.0229 score 943.88 - absdiff 14327.49 percdiff 176.7163 tig 330 read 484616 pos 18496-37275 NOT confused by 3' edge to read 443335 - best edge read 142437 len 15362 erate 0.0059 score 15271.36 - alt edge len 4709 erate 0.0059 score 4681.22 - absdiff 10590.15 percdiff 106.1532 tig 330 read 484616 pos 18496-37275 NOT confused by 3' edge to read 509276 - best edge read 142437 len 15362 erate 0.0059 score 15271.36 - alt edge len 4118 erate 0.0095 score 4078.88 - absdiff 11192.49 percdiff 115.6831 tig 330 read 484616 pos 18496-37275 NOT confused by 3' edge to read 509279 - best edge read 142437 len 15362 erate 0.0059 score 15271.36 - alt edge len 4137 erate 0.0114 score 4089.84 - absdiff 11181.53 percdiff 115.5045 tig 330 read 484616 pos 18496-37275 NOT confused by 3' edge to read 509280 - best edge read 142437 len 15362 erate 0.0059 score 15271.36 - alt edge len 4096 erate 0.0115 score 4048.90 - absdiff 11222.47 percdiff 116.1731 tig 330 read 479139 pos 18598-37618 NOT confused by 3' edge to read 268625 - best edge read 142437 len 15227 erate 0.0061 score 15134.12 - alt edge len 846 erate 0.0300 score 820.62 - absdiff 14313.50 percdiff 179.4263 tig 330 read 479139 pos 18598-37618 NOT confused by 3' edge to read 443335 - best edge read 142437 len 15227 erate 0.0061 score 15134.12 - alt edge len 4581 erate 0.0081 score 4543.89 - absdiff 10590.22 percdiff 107.6351 tig 330 read 479139 pos 18598-37618 NOT confused by 3' edge to read 509276 - best edge read 142437 len 15227 erate 0.0061 score 15134.12 - alt edge len 3995 erate 0.0105 score 3953.05 - absdiff 11181.06 percdiff 117.1579 tig 330 read 479139 pos 18598-37618 NOT confused by 3' edge to read 509279 - best edge read 142437 len 15227 erate 0.0061 score 15134.12 - alt edge len 4014 erate 0.0122 score 3965.03 - absdiff 11169.09 percdiff 116.9590 tig 330 read 479139 pos 18598-37618 NOT confused by 3' edge to read 509280 - best edge read 142437 len 15227 erate 0.0061 score 15134.12 - alt edge len 3973 erate 0.0129 score 3921.75 - absdiff 11212.37 percdiff 117.6789 tig 330 read 526432 pos 26401-40197 IS confused by 3' edge to read 114055 - best edge read 507864 len 11922 erate 0.0334 score 11523.81 - alt edge len 9959 erate 0.0146 score 9813.60 - absdiff 1710.21 percdiff 16.0301 tig 330 read 526432 pos 26401-40197 NOT confused by 3' edge to read 299644 - best edge read 507864 len 11922 erate 0.0334 score 11523.81 - alt edge len 9030 erate 0.0149 score 8895.45 - absdiff 2628.35 percdiff 25.7439 tig 330 read 526432 pos 26401-40197 IS confused by 3' edge to read 481638 - best edge read 507864 len 11922 erate 0.0334 score 11523.81 - alt edge len 9781 erate 0.0094 score 9689.06 - absdiff 1834.75 percdiff 17.2984 tig 330 read 411529 pos 26447-41580 NOT confused by 3' edge to read 36156 - best edge read 526432 len 13750 erate 0.0154 score 13538.25 - alt edge len 4577 erate 0.0371 score 4407.19 - absdiff 9131.06 percdiff 101.7646 tig 330 read 411529 pos 26447-41580 NOT confused by 3' edge to read 36157 - best edge read 526432 len 13750 erate 0.0154 score 13538.25 - alt edge len 4559 erate 0.0360 score 4394.88 - absdiff 9143.37 percdiff 101.9719 tig 330 read 411529 pos 26447-41580 NOT confused by 3' edge to read 114055 - best edge read 526432 len 13750 erate 0.0154 score 13538.25 - alt edge len 9932 erate 0.0172 score 9761.17 - absdiff 3777.08 percdiff 32.4221 tig 330 read 411529 pos 26447-41580 NOT confused by 3' edge to read 299644 - best edge read 526432 len 13750 erate 0.0154 score 13538.25 - alt edge len 9004 erate 0.0174 score 8847.33 - absdiff 4690.92 percdiff 41.9102 tig 330 read 411529 pos 26447-41580 NOT confused by 3' edge to read 481638 - best edge read 526432 len 13750 erate 0.0154 score 13538.25 - alt edge len 9754 erate 0.0096 score 9660.36 - absdiff 3877.89 percdiff 33.4321 tig 330 read 21629 pos 39286-44969 IS confused by 5' edge to read 398554 - best edge read 411529 len 2294 erate 0.0223 score 2242.84 - alt edge len 570 erate 0.0230 score 556.89 - absdiff 1685.95 percdiff 120.4367 saved region 3042:41594 - 8 best edges are potentially confused break tig 330 into up to 3 pieces: 0 2542 unique (length 2542) 2542 42094 repeat (length 39552) 42094 44969 unique (length 2875) Creating Unitig 90699 Creating Unitig 90700 Creating Unitig 90701 For tig 330 unique region 0 2542 - 0/ 1 reads repeat/unique - unitig 90699 created. For tig 330 repeat region 2542 42094 - 1053/ 0 reads repeat/unique - unitig 90700 created. For tig 330 unique region 42094 44969 - 0/ 4 reads repeat/unique - unitig 90701 created. Annotating repeats in reads for tig 332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 333/90584. Annotated with 65 overlaps. Scan reads to discard spanned repeats. discard region 0:5889 - contained in read 399856 0- 7646 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 337/90584. Annotated with 123 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4834:13294 - closest 5' read 10680 ( +1219) 3615:9944 ( -3350) saved region 4834:13294 - closest 3' read 322416 ( -79) 4913:13294 ( +0) search for confused edges: tig 337 read 526170 pos 1198-7497 IS confused by 5' edge to read 89822 - best edge read 227141 len 2588 erate 0.0221 score 2530.81 - alt edge len 2169 erate 0.0269 score 2110.65 - absdiff 420.15 percdiff 18.1043 tig 337 read 526170 pos 1198-7497 IS confused by 5' edge to read 476555 - best edge read 227141 len 2588 erate 0.0221 score 2530.81 - alt edge len 2153 erate 0.0238 score 2101.76 - absdiff 429.05 percdiff 18.5231 tig 337 read 526170 pos 1198-7497 IS confused by 5' edge to read 476558 - best edge read 227141 len 2588 erate 0.0221 score 2530.81 - alt edge len 2132 erate 0.0269 score 2074.65 - absdiff 456.16 percdiff 19.8094 tig 337 read 227141 pos 4909-11248 NOT confused by 5' edge to read 24089 - best edge read 227142 len 6338 erate 0.0101 score 6273.99 - alt edge len 3531 erate 0.0147 score 3479.09 - absdiff 2794.89 percdiff 57.3130 tig 337 read 227141 pos 4909-11248 IS confused by 5' edge to read 89822 - best edge read 227142 len 6338 erate 0.0101 score 6273.99 - alt edge len 5915 erate 0.0096 score 5858.22 - absdiff 415.77 percdiff 6.8540 tig 337 read 227142 pos 4910-11298 NOT confused by 3' edge to read 24089 - best edge read 322416 len 6385 erate 0.0075 score 6337.11 - alt edge len 3580 erate 0.0129 score 3533.82 - absdiff 2803.29 percdiff 56.7990 tig 337 read 227142 pos 4910-11298 IS confused by 5' edge to read 74017 - best edge read 227141 len 6357 erate 0.0101 score 6292.79 - alt edge len 6002 erate 0.0075 score 5956.99 - absdiff 335.81 percdiff 5.4827 tig 337 read 227142 pos 4910-11298 IS confused by 5' edge to read 74019 - best edge read 227141 len 6357 erate 0.0101 score 6292.79 - alt edge len 5980 erate 0.0074 score 5935.75 - absdiff 357.05 percdiff 5.8396 tig 337 read 227142 pos 4910-11298 IS confused by 3' edge to read 89822 - best edge read 322416 len 6385 erate 0.0075 score 6337.11 - alt edge len 5968 erate 0.0092 score 5913.09 - absdiff 424.02 percdiff 6.9226 tig 337 read 227142 pos 4910-11298 NOT confused by 5' edge to read 137795 - best edge read 227141 len 6357 erate 0.0101 score 6292.79 - alt edge len 4106 erate 0.0102 score 4064.12 - absdiff 2228.68 percdiff 43.0374 tig 337 read 227142 pos 4910-11298 IS confused by 5' edge to read 137796 - best edge read 227141 len 6357 erate 0.0101 score 6292.79 - alt edge len 4243 erate 0.0113 score 4195.05 - absdiff 2097.74 percdiff 40.0033 tig 337 read 322416 pos 4913-13294 IS confused by 3' edge to read 74017 - best edge read 227142 len 6396 erate 0.0075 score 6348.03 - alt edge len 6009 erate 0.0053 score 5977.15 - absdiff 370.88 percdiff 6.0182 tig 337 read 322416 pos 4913-13294 IS confused by 3' edge to read 74019 - best edge read 227142 len 6396 erate 0.0075 score 6348.03 - alt edge len 5987 erate 0.0064 score 5948.68 - absdiff 399.35 percdiff 6.4952 tig 337 read 322416 pos 4913-13294 NOT confused by 3' edge to read 137795 - best edge read 227142 len 6396 erate 0.0075 score 6348.03 - alt edge len 4109 erate 0.0103 score 4066.68 - absdiff 2281.35 percdiff 43.8102 tig 337 read 322416 pos 4913-13294 NOT confused by 3' edge to read 137796 - best edge read 227142 len 6396 erate 0.0075 score 6348.03 - alt edge len 4245 erate 0.0087 score 4208.07 - absdiff 2139.96 percdiff 40.5446 saved region 4834:13294 - 10 best edges are potentially confused break tig 337 into up to 2 pieces: 0 4334 unique (length 4334) 4334 13294 repeat (length 8960) Creating Unitig 90702 Creating Unitig 90703 For tig 337 unique region 0 4334 - 0/ 16 reads repeat/unique - unitig 90702 created. For tig 337 repeat region 4334 13294 - 18/ 0 reads repeat/unique - unitig 90703 created. Annotating repeats in reads for tig 340/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 341/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 17097:19877 - contained in read 152229 8838- 20710 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 342/90584. Annotated with 616 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1286:20159 - closest 5' read 79277 ( +1284) 2:6285 (-13874) saved region 1286:20159 - closest 3' read 499365 (-12257) 13543:20159 ( +0) search for confused edges: tig 342 read 79277 pos 2-6285 IS confused by 3' edge to read 71093 - best edge read 493900 len 3272 erate 0.0374 score 3149.63 - alt edge len 2322 erate 0.0298 score 2252.80 - absdiff 896.82 percdiff 33.2007 tig 342 read 79277 pos 2-6285 IS confused by 3' edge to read 97150 - best edge read 493900 len 3272 erate 0.0374 score 3149.63 - alt edge len 2887 erate 0.0341 score 2788.55 - absdiff 361.07 percdiff 12.1611 tig 342 read 79277 pos 2-6285 IS confused by 3' edge to read 164265 - best edge read 493900 len 3272 erate 0.0374 score 3149.63 - alt edge len 2565 erate 0.0371 score 2469.84 - absdiff 679.79 percdiff 24.1941 tig 342 read 79277 pos 2-6285 IS confused by 3' edge to read 248266 - best edge read 493900 len 3272 erate 0.0374 score 3149.63 - alt edge len 2431 erate 0.0389 score 2336.43 - absdiff 813.19 percdiff 29.6458 tig 342 read 79277 pos 2-6285 IS confused by 3' edge to read 443761 - best edge read 493900 len 3272 erate 0.0374 score 3149.63 - alt edge len 2215 erate 0.0293 score 2150.10 - absdiff 999.53 percdiff 37.7199 tig 342 read 79277 pos 2-6285 IS confused by 3' edge to read 499365 - best edge read 493900 len 3272 erate 0.0374 score 3149.63 - alt edge len 3236 erate 0.0373 score 3115.30 - absdiff 34.33 percdiff 1.0959 tig 342 read 493900 pos 3013-10631 NOT confused by 3' edge to read 252367 - best edge read 397914 len 6663 erate 0.0309 score 6457.11 - alt edge len 883 erate 0.0217 score 863.84 - absdiff 5593.27 percdiff 152.8018 tig 342 read 493900 pos 3013-10631 NOT confused by 3' edge to read 381370 - best edge read 397914 len 6663 erate 0.0309 score 6457.11 - alt edge len 3358 erate 0.0280 score 3263.98 - absdiff 3193.14 percdiff 65.6951 tig 342 read 397914 pos 3968-14883 NOT confused by 3' edge to read 74245 - best edge read 493900 len 6675 erate 0.0309 score 6468.74 - alt edge len 4279 erate 0.0304 score 4148.92 - absdiff 2319.82 percdiff 43.6975 tig 342 read 13003 pos 9557-16474 NOT confused by 5' edge to read 443761 - best edge read 336611 len 6777 erate 0.0306 score 6569.62 - alt edge len 2692 erate 0.0225 score 2631.43 - absdiff 3938.19 percdiff 85.6031 tig 342 read 336611 pos 9697-17514 NOT confused by 3' edge to read 74245 - best edge read 298967 len 7787 erate 0.0449 score 7437.36 - alt edge len 1382 erate 0.0412 score 1325.06 - absdiff 6112.30 percdiff 139.5117 tig 342 read 336611 pos 9697-17514 NOT confused by 3' edge to read 443761 - best edge read 298967 len 7787 erate 0.0449 score 7437.36 - alt edge len 3799 erate 0.0337 score 3670.97 - absdiff 3766.39 percdiff 67.8119 tig 342 read 298967 pos 9727-17700 NOT confused by 3' edge to read 74245 - best edge read 298966 len 7708 erate 0.0144 score 7597.00 - alt edge len 1869 erate 0.0284 score 1815.92 - absdiff 5781.08 percdiff 122.8329 tig 342 read 298967 pos 9727-17700 NOT confused by 3' edge to read 443761 - best edge read 298966 len 7708 erate 0.0144 score 7597.00 - alt edge len 4002 erate 0.0268 score 3894.75 - absdiff 3702.26 percdiff 64.4333 tig 342 read 298966 pos 9992-18060 NOT confused by 5' edge to read 74245 - best edge read 97150 len 7870 erate 0.0273 score 7655.15 - alt edge len 1607 erate 0.0275 score 1562.81 - absdiff 6092.34 percdiff 132.1842 tig 342 read 298966 pos 9992-18060 NOT confused by 5' edge to read 443761 - best edge read 97150 len 7870 erate 0.0273 score 7655.15 - alt edge len 4366 erate 0.0264 score 4250.74 - absdiff 3404.41 percdiff 57.1887 tig 342 read 97150 pos 10190-19532 NOT confused by 5' edge to read 74245 - best edge read 71093 len 8383 erate 0.0178 score 8233.78 - alt edge len 3634 erate 0.0316 score 3519.17 - absdiff 4714.62 percdiff 80.2287 tig 342 read 97150 pos 10190-19532 NOT confused by 5' edge to read 79277 - best edge read 71093 len 8383 erate 0.0178 score 8233.78 - alt edge len 2890 erate 0.0341 score 2791.45 - absdiff 5442.33 percdiff 98.7250 tig 342 read 97150 pos 10190-19532 NOT confused by 5' edge to read 443761 - best edge read 71093 len 8383 erate 0.0178 score 8233.78 - alt edge len 5772 erate 0.0212 score 5649.63 - absdiff 2584.15 percdiff 37.2264 tig 342 read 97150 pos 10190-19532 NOT confused by 3' edge to read 471290 - best edge read 298966 len 7941 erate 0.0273 score 7724.21 - alt edge len 596 erate 0.0319 score 576.99 - absdiff 7147.22 percdiff 172.1974 tig 342 read 71093 pos 11149-19566 NOT confused by 5' edge to read 74245 - best edge read 499365 len 6023 erate 0.0253 score 5870.62 - alt edge len 3362 erate 0.0285 score 3266.18 - absdiff 2604.44 percdiff 57.0098 tig 342 read 71093 pos 11149-19566 NOT confused by 5' edge to read 79277 - best edge read 499365 len 6023 erate 0.0253 score 5870.62 - alt edge len 2315 erate 0.0298 score 2246.01 - absdiff 3624.61 percdiff 89.3130 tig 342 read 71093 pos 11149-19566 NOT confused by 5' edge to read 164266 - best edge read 499365 len 6023 erate 0.0253 score 5870.62 - alt edge len 2947 erate 0.0338 score 2847.39 - absdiff 3023.23 percdiff 69.3559 tig 342 read 71093 pos 11149-19566 IS confused by 5' edge to read 443761 - best edge read 499365 len 6023 erate 0.0253 score 5870.62 - alt edge len 5803 erate 0.0198 score 5688.10 - absdiff 182.52 percdiff 3.1581 tig 342 read 71093 pos 11149-19566 NOT confused by 3' edge to read 471289 - best edge read 97150 len 8353 erate 0.0178 score 8204.32 - alt edge len 893 erate 0.0291 score 867.01 - absdiff 7337.30 percdiff 161.7691 saved region 1286:20159 - 7 best edges are potentially confused break tig 342 into up to 2 pieces: 0 786 unique (length 786) 786 20159 repeat (length 19373) Creating Unitig 90704 Creating Unitig 90705 For tig 342 unique region 0 786 - 0/ 3 reads repeat/unique - unitig 90704 created. For tig 342 repeat region 786 20159 - 106/ 0 reads repeat/unique - unitig 90705 created. Annotating repeats in reads for tig 344/90584. Annotated with 493 overlaps. Scan reads to discard spanned repeats. discard region 0:867 - contained in read 507954 0- 3029 thickest edges to the repeat regions: saved region 942:23449 - closest 5' read 318293 ( +2) 940:10821 (-12628) saved region 942:23449 - closest 3' read 111182 (-16150) 17092:23494 ( +45) search for confused edges: tig 344 read 92333 pos 1768-13626 NOT confused by 3' edge to read 32125 - best edge read 303009 len 11369 erate 0.0193 score 11149.58 - alt edge len 4433 erate 0.0276 score 4310.65 - absdiff 6838.93 percdiff 88.4713 tig 344 read 92333 pos 1768-13626 NOT confused by 3' edge to read 32126 - best edge read 303009 len 11369 erate 0.0193 score 11149.58 - alt edge len 1482 erate 0.0292 score 1438.73 - absdiff 9710.85 percdiff 154.2837 tig 344 read 92333 pos 1768-13626 NOT confused by 3' edge to read 49979 - best edge read 303009 len 11369 erate 0.0193 score 11149.58 - alt edge len 2014 erate 0.0254 score 1962.84 - absdiff 9186.73 percdiff 140.1226 tig 344 read 92333 pos 1768-13626 NOT confused by 3' edge to read 49985 - best edge read 303009 len 11369 erate 0.0193 score 11149.58 - alt edge len 2005 erate 0.0255 score 1953.87 - absdiff 9195.71 percdiff 140.3555 tig 344 read 92333 pos 1768-13626 NOT confused by 3' edge to read 111182 - best edge read 303009 len 11369 erate 0.0193 score 11149.58 - alt edge len 2234 erate 0.0233 score 2181.95 - absdiff 8967.63 percdiff 134.5327 tig 344 read 92333 pos 1768-13626 NOT confused by 3' edge to read 389953 - best edge read 303009 len 11369 erate 0.0193 score 11149.58 - alt edge len 1288 erate 0.0398 score 1236.74 - absdiff 9912.84 percdiff 160.0612 tig 344 read 92333 pos 1768-13626 NOT confused by 3' edge to read 389954 - best edge read 303009 len 11369 erate 0.0193 score 11149.58 - alt edge len 1278 erate 0.0425 score 1223.68 - absdiff 9925.89 percdiff 160.4410 tig 344 read 92333 pos 1768-13626 NOT confused by 3' edge to read 441378 - best edge read 303009 len 11369 erate 0.0193 score 11149.58 - alt edge len 4434 erate 0.0316 score 4293.89 - absdiff 6855.69 percdiff 88.7844 tig 344 read 303009 pos 2257-15916 NOT confused by 5' edge to read 49979 - best edge read 92332 len 8282 erate 0.0213 score 8105.59 - alt edge len 1510 erate 0.0313 score 1462.74 - absdiff 6642.86 percdiff 138.8509 tig 344 read 303009 pos 2257-15916 NOT confused by 5' edge to read 49985 - best edge read 92332 len 8282 erate 0.0213 score 8105.59 - alt edge len 1501 erate 0.0328 score 1451.77 - absdiff 6653.83 percdiff 139.2398 tig 344 read 303009 pos 2257-15916 NOT confused by 5' edge to read 88987 - best edge read 92332 len 8282 erate 0.0213 score 8105.59 - alt edge len 1865 erate 0.0367 score 1796.55 - absdiff 6309.04 percdiff 127.4277 tig 344 read 92332 pos 7634-19467 NOT confused by 5' edge to read 49979 - best edge read 441378 len 4564 erate 0.0317 score 4419.32 - alt edge len 2143 erate 0.0281 score 2082.78 - absdiff 2336.54 percdiff 71.8703 tig 344 read 92332 pos 7634-19467 NOT confused by 5' edge to read 49985 - best edge read 441378 len 4564 erate 0.0317 score 4419.32 - alt edge len 2134 erate 0.0310 score 2067.85 - absdiff 2351.48 percdiff 72.4962 tig 344 read 92332 pos 7634-19467 NOT confused by 3' edge to read 507954 - best edge read 92333 len 8832 erate 0.0126 score 8720.72 - alt edge len 1128 erate 0.0314 score 1092.58 - absdiff 7628.14 percdiff 155.4653 tig 344 read 441378 pos 14903-21645 IS confused by 3' edge to read 92333 - best edge read 92332 len 4555 erate 0.0317 score 4410.61 - alt edge len 4412 erate 0.0316 score 4272.58 - absdiff 138.03 percdiff 3.1791 tig 344 read 441378 pos 14903-21645 NOT confused by 5' edge to read 303070 - best edge read 32125 len 6741 erate 0.0204 score 6603.48 - alt edge len 1351 erate 0.0348 score 1303.99 - absdiff 5299.50 percdiff 134.0378 tig 344 read 32125 pos 14904-21769 NOT confused by 3' edge to read 43093 - best edge read 441378 len 6759 erate 0.0204 score 6621.12 - alt edge len 715 erate 0.0421 score 684.90 - absdiff 5936.22 percdiff 162.5022 tig 344 read 32125 pos 14904-21769 NOT confused by 3' edge to read 92333 - best edge read 441378 len 6759 erate 0.0204 score 6621.12 - alt edge len 4424 erate 0.0276 score 4301.90 - absdiff 2319.22 percdiff 42.4648 tig 344 read 32125 pos 14904-21769 NOT confused by 5' edge to read 303070 - best edge read 32126 len 6784 erate 0.0176 score 6664.60 - alt edge len 1467 erate 0.0379 score 1411.40 - absdiff 5253.20 percdiff 130.0941 tig 344 read 32126 pos 14985-21742 NOT confused by 5' edge to read 43093 - best edge read 32125 len 6756 erate 0.0176 score 6637.09 - alt edge len 634 erate 0.0381 score 609.84 - absdiff 6027.25 percdiff 166.3392 tig 344 read 32126 pos 14985-21742 NOT confused by 5' edge to read 92333 - best edge read 32125 len 6756 erate 0.0176 score 6637.09 - alt edge len 1481 erate 0.0292 score 1437.75 - absdiff 5199.34 percdiff 128.7786 tig 344 read 32126 pos 14985-21742 NOT confused by 3' edge to read 303070 - best edge read 111182 len 4650 erate 0.0256 score 4530.96 - alt edge len 1472 erate 0.0296 score 1428.43 - absdiff 3102.53 percdiff 104.1225 tig 344 read 32126 pos 14985-21742 NOT confused by 3' edge to read 303071 - best edge read 111182 len 4650 erate 0.0256 score 4530.96 - alt edge len 1409 erate 0.0382 score 1355.18 - absdiff 3175.78 percdiff 107.9072 tig 344 read 111182 pos 17092-23494 NOT confused by 5' edge to read 92333 - best edge read 32126 len 4715 erate 0.0256 score 4594.30 - alt edge len 2254 erate 0.0233 score 2201.48 - absdiff 2392.81 percdiff 70.4206 saved region 942:23449 - 1 best edges are potentially confused break tig 344 into up to 3 pieces: 0 442 unique (length 442) 442 23949 repeat (length 23507) 23949 28312 unique (length 4363) Creating Unitig 90706 Creating Unitig 90707 Creating Unitig 90708 For tig 344 unique region 0 442 - 0/ 1 reads repeat/unique - unitig 90706 created. For tig 344 repeat region 442 23949 - 137/ 0 reads repeat/unique - unitig 90707 created. For tig 344 unique region 23949 28312 - 0/ 5 reads repeat/unique - unitig 90708 created. Annotating repeats in reads for tig 345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 346/90584. Annotated with 89 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:4594 - closest read 527571 ( +0) 0:5081 ( +487) (contained) saved region 0:4594 - closest 5' read 527571 ( +0) 0:5081 ( +487) saved region 0:4594 - closest 3' read 527571 ( +0) 0:5081 ( +487) search for confused edges: discard region 0:4594 - no confusion in best edges Annotating repeats in reads for tig 347/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 0:1492 - contained in read 109064 0- 6469 discard region 3153:7662 - contained in read 524143 270- 9682 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 349/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 3399:4821 - contained in read 486516 177- 6129 discard region 4802:6113 - contained in read 486516 177- 6129 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 350/90584. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 13507:14618 - contained in read 526306 2505- 17702 discard region 16942:15971 - contained in read 526306 2505- 17702 discard region 17340:21371 - contained in read 32886 13849- 21371 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 359/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13978:21138 - closest 5' read 528337 ( +113) 13865:20318 ( -820) saved region 13978:21138 - closest 3' read 509174 ( -1265) 15243:21139 ( +1) search for confused edges: tig 359 read 509175 pos 15188-21129 NOT confused by 3' edge to read 328690 - best edge read 528337 len 5120 erate 0.0303 score 4964.86 - alt edge len 986 erate 0.0358 score 950.70 - absdiff 4014.16 percdiff 135.7153 discard region 13978:21138 - no confusion in best edges Annotating repeats in reads for tig 360/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 3258:7670 - contained in read 132397 1809- 9970 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 362/90584. Annotated with 1336 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1075:26651 - closest 5' read 74246 ( +620) 455:7794 (-18857) saved region 1075:26651 - closest 3' read 381370 (-18260) 19335:26651 ( +0) search for confused edges: tig 362 read 164266 pos 2115-15337 NOT confused by 5' edge to read 6861 - best edge read 164265 len 9732 erate 0.0227 score 9511.08 - alt edge len 4964 erate 0.0317 score 4806.64 - absdiff 4704.44 percdiff 65.7149 tig 362 read 164266 pos 2115-15337 NOT confused by 5' edge to read 71093 - best edge read 164265 len 9732 erate 0.0227 score 9511.08 - alt edge len 2944 erate 0.0338 score 2844.49 - absdiff 6666.59 percdiff 107.9123 tig 362 read 164266 pos 2115-15337 NOT confused by 5' edge to read 305245 - best edge read 164265 len 9732 erate 0.0227 score 9511.08 - alt edge len 1766 erate 0.0285 score 1715.67 - absdiff 7795.41 percdiff 138.8721 tig 362 read 164266 pos 2115-15337 NOT confused by 5' edge to read 305246 - best edge read 164265 len 9732 erate 0.0227 score 9511.08 - alt edge len 1767 erate 0.0313 score 1711.69 - absdiff 7799.39 percdiff 138.9922 tig 362 read 164266 pos 2115-15337 NOT confused by 5' edge to read 443180 - best edge read 164265 len 9732 erate 0.0227 score 9511.08 - alt edge len 4902 erate 0.0287 score 4761.31 - absdiff 4749.77 percdiff 66.5588 tig 362 read 164266 pos 2115-15337 NOT confused by 5' edge to read 517978 - best edge read 164265 len 9732 erate 0.0227 score 9511.08 - alt edge len 1518 erate 0.0352 score 1464.57 - absdiff 8046.52 percdiff 146.6249 tig 362 read 164265 pos 5574-19550 NOT confused by 5' edge to read 79277 - best edge read 164266 len 9763 erate 0.0227 score 9541.38 - alt edge len 2570 erate 0.0371 score 2474.65 - absdiff 7066.73 percdiff 117.6216 tig 362 read 443761 pos 11249-20721 NOT confused by 5' edge to read 13003 - best edge read 276106 len 7854 erate 0.0421 score 7523.35 - alt edge len 2692 erate 0.0225 score 2631.43 - absdiff 4891.92 percdiff 96.3471 tig 362 read 443761 pos 11249-20721 IS confused by 5' edge to read 71093 - best edge read 276106 len 7854 erate 0.0421 score 7523.35 - alt edge len 5827 erate 0.0198 score 5711.63 - absdiff 1811.72 percdiff 27.3778 tig 362 read 443761 pos 11249-20721 NOT confused by 3' edge to read 74245 - best edge read 164265 len 8322 erate 0.0347 score 8033.23 - alt edge len 3576 erate 0.0227 score 3494.82 - absdiff 4538.40 percdiff 78.7367 tig 362 read 443761 pos 11249-20721 NOT confused by 3' edge to read 79277 - best edge read 164265 len 8322 erate 0.0347 score 8033.23 - alt edge len 2218 erate 0.0293 score 2153.01 - absdiff 5880.21 percdiff 115.4541 tig 362 read 443761 pos 11249-20721 IS confused by 5' edge to read 97150 - best edge read 276106 len 7854 erate 0.0421 score 7523.35 - alt edge len 5762 erate 0.0212 score 5639.85 - absdiff 1883.50 percdiff 28.6177 tig 362 read 443761 pos 11249-20721 NOT confused by 5' edge to read 298966 - best edge read 276106 len 7854 erate 0.0421 score 7523.35 - alt edge len 4363 erate 0.0264 score 4247.82 - absdiff 3275.53 percdiff 55.6535 tig 362 read 443761 pos 11249-20721 NOT confused by 5' edge to read 298967 - best edge read 276106 len 7854 erate 0.0421 score 7523.35 - alt edge len 4006 erate 0.0268 score 3898.64 - absdiff 3624.71 percdiff 63.4690 tig 362 read 443761 pos 11249-20721 NOT confused by 5' edge to read 336611 - best edge read 276106 len 7854 erate 0.0421 score 7523.35 - alt edge len 3855 erate 0.0337 score 3725.09 - absdiff 3798.26 percdiff 67.5340 tig 362 read 276106 pos 12867-20754 NOT confused by 3' edge to read 74245 - best edge read 443761 len 7739 erate 0.0421 score 7413.19 - alt edge len 5063 erate 0.0281 score 4920.73 - absdiff 2492.46 percdiff 40.4163 tig 362 read 483585 pos 14599-21456 NOT confused by 5' edge to read 74245 - best edge read 276106 len 6177 erate 0.0330 score 5973.16 - alt edge len 3340 erate 0.0225 score 3264.85 - absdiff 2708.31 percdiff 58.6340 tig 362 read 248266 pos 14763-23039 NOT confused by 3' edge to read 74245 - best edge read 483585 len 6680 erate 0.0241 score 6519.01 - alt edge len 3470 erate 0.0259 score 3380.13 - absdiff 3138.88 percdiff 63.4173 tig 362 read 248266 pos 14763-23039 NOT confused by 3' edge to read 79277 - best edge read 483585 len 6680 erate 0.0241 score 6519.01 - alt edge len 2414 erate 0.0389 score 2320.10 - absdiff 4198.92 percdiff 95.0077 tig 362 read 420980 pos 16893-23205 NOT confused by 3' edge to read 74245 - best edge read 248266 len 6128 erate 0.0271 score 5961.93 - alt edge len 1009 erate 0.0387 score 969.95 - absdiff 4991.98 percdiff 144.0295 tig 362 read 420980 pos 16893-23205 IS confused by 3' edge to read 396499 - best edge read 248266 len 6128 erate 0.0271 score 5961.93 - alt edge len 6065 erate 0.0291 score 5888.51 - absdiff 73.42 percdiff 1.2392 tig 362 read 252367 pos 17251-24130 NOT confused by 3' edge to read 74245 - best edge read 420980 len 5918 erate 0.0350 score 5710.87 - alt edge len 1281 erate 0.0429 score 1226.05 - absdiff 4484.82 percdiff 129.3032 tig 362 read 252367 pos 17251-24130 IS confused by 3' edge to read 238203 - best edge read 420980 len 5918 erate 0.0350 score 5710.87 - alt edge len 5600 erate 0.0422 score 5363.68 - absdiff 347.19 percdiff 6.2701 tig 362 read 252367 pos 17251-24130 IS confused by 3' edge to read 396499 - best edge read 420980 len 5918 erate 0.0350 score 5710.87 - alt edge len 5717 erate 0.0276 score 5559.21 - absdiff 151.66 percdiff 2.6914 tig 362 read 252367 pos 17251-24130 NOT confused by 3' edge to read 399894 - best edge read 420980 len 5918 erate 0.0350 score 5710.87 - alt edge len 3368 erate 0.0435 score 3221.49 - absdiff 2489.38 percdiff 55.7384 tig 362 read 252367 pos 17251-24130 NOT confused by 3' edge to read 399895 - best edge read 420980 len 5918 erate 0.0350 score 5710.87 - alt edge len 3725 erate 0.0399 score 3576.37 - absdiff 2134.50 percdiff 45.9662 tig 362 read 252367 pos 17251-24130 NOT confused by 5' edge to read 493900 - best edge read 381370 len 4795 erate 0.0320 score 4641.56 - alt edge len 882 erate 0.0217 score 862.86 - absdiff 3778.70 percdiff 137.2969 tig 362 read 381370 pos 19335-26651 IS confused by 5' edge to read 396499 - best edge read 252367 len 4837 erate 0.0320 score 4682.22 - alt edge len 3639 erate 0.0281 score 3536.74 - absdiff 1145.47 percdiff 27.8739 saved region 1075:26651 - 6 best edges are potentially confused break tig 362 into up to 2 pieces: 0 575 unique (length 575) 575 26651 repeat (length 26076) Creating Unitig 90709 Creating Unitig 90710 For tig 362 unique region 0 575 - 0/ 4 reads repeat/unique - unitig 90709 created. For tig 362 repeat region 575 26651 - 104/ 0 reads repeat/unique - unitig 90710 created. Annotating repeats in reads for tig 363/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 364/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 366/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 11662:13615 - contained in read 264679 8807- 17205 discard region 15915:16559 - contained in read 264679 8807- 17205 discard region 16674:17190 - contained in read 264678 11662- 17977 thickest edges to the repeat regions: saved region 0:8621 - closest 5' read 508942 ( +0) 0:8083 ( -538) saved region 0:8621 - closest 3' read 101056 ( -4587) 4587:11409 ( +2788) search for confused edges: tig 366 read 508942 pos 0-8083 IS confused by 5' edge to read 89288 - best edge read 178209 len 6416 erate 0.0122 score 6337.72 - alt edge len 5729 erate 0.0112 score 5664.84 - absdiff 672.89 percdiff 11.2124 tig 366 read 508942 pos 0-8083 IS confused by 5' edge to read 397458 - best edge read 178209 len 6416 erate 0.0122 score 6337.72 - alt edge len 6406 erate 0.0142 score 6315.03 - absdiff 22.69 percdiff 0.3587 tig 366 read 508942 pos 0-8083 NOT confused by 5' edge to read 472982 - best edge read 178209 len 6416 erate 0.0122 score 6337.72 - alt edge len 2529 erate 0.0130 score 2496.12 - absdiff 3841.60 percdiff 86.9746 saved region 0:8621 - 2 best edges are potentially confused break tig 366 into up to 2 pieces: 0 9121 repeat (length 9121) 9121 23933 unique (length 14812) Creating Unitig 90711 Creating Unitig 90712 For tig 366 repeat region 0 9121 - 3/ 0 reads repeat/unique - unitig 90711 created. For tig 366 unique region 9121 23933 - 0/ 40 reads repeat/unique - unitig 90712 created. Annotating repeats in reads for tig 367/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 22:12006 - closest 5' read 199454 ( +22) 0:10240 ( -1766) saved region 22:12006 - closest 3' read 390443 ( -3064) 3086:12109 ( +103) search for confused edges: discard region 22:12006 - no confusion in best edges Annotating repeats in reads for tig 371/90584. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 15627:17036 - contained in read 17801 10828- 19501 thickest edges to the repeat regions: saved region 5331:11084 - closest read 450000 ( +8) 5323:11964 ( +880) (contained) saved region 5331:11084 - closest 5' read 450000 ( +8) 5323:11964 ( +880) saved region 5331:11084 - closest 3' read 450000 ( +8) 5323:11964 ( +880) saved region 21604:27771 - closest 5' read 181735 ( +1042) 20562:27722 ( -49) saved region 21604:27771 - closest 3' read 357412 ( -50) 21654:28772 ( +1001) search for confused edges: tig 371 read 181735 pos 20562-27722 NOT confused by 5' edge to read 382264 - best edge read 357412 len 6068 erate 0.0270 score 5904.16 - alt edge len 738 erate 0.0191 score 723.90 - absdiff 5180.26 percdiff 156.3128 tig 371 read 181735 pos 20562-27722 NOT confused by 5' edge to read 520544 - best edge read 357412 len 6068 erate 0.0270 score 5904.16 - alt edge len 2837 erate 0.0170 score 2788.77 - absdiff 3115.39 percdiff 71.6764 tig 371 read 181735 pos 20562-27722 NOT confused by 5' edge to read 520545 - best edge read 357412 len 6068 erate 0.0270 score 5904.16 - alt edge len 2848 erate 0.0198 score 2791.61 - absdiff 3112.55 percdiff 71.5878 discard region 5331:11084 - no confusion in best edges discard region 21604:27771 - no confusion in best edges Annotating repeats in reads for tig 373/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2269:4779 - contained in read 63496 0- 5761 discard region 18415:20592 - contained in read 230980 16762- 20592 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 374/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1938:0 - contained in read 489997 0- 4094 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 379/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9767 - closest read 127826 ( +0) 0:10120 ( +353) (contained) saved region 0:9767 - closest 5' read 127826 ( +0) 0:10120 ( +353) saved region 0:9767 - closest 3' read 127826 ( +0) 0:10120 ( +353) search for confused edges: discard region 0:9767 - no confusion in best edges Annotating repeats in reads for tig 381/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 16686:20737 - contained in read 216114 11366- 22312 thickest edges to the repeat regions: saved region 934:5371 - closest read 242545 ( +591) 343:5700 ( +329) (contained) saved region 934:5371 - closest read 206889 ( +396) 538:6794 ( +1423) (contained) saved region 934:5371 - closest read 206886 ( +389) 545:6641 ( +1270) (contained) saved region 934:5371 - closest read 206888 ( +385) 549:6785 ( +1414) (contained) saved region 934:5371 - closest read 372473 ( +236) 698:6183 ( +812) (contained) saved region 934:5371 - closest read 483004 ( +116) 818:6730 ( +1359) (contained) saved region 934:5371 - closest read 483005 ( +91) 843:6060 ( +689) (contained) saved region 934:5371 - closest read 372472 ( +89) 845:5892 ( +521) (contained) saved region 934:5371 - closest read 275588 ( +66) 868:10446 ( +5075) (contained) saved region 934:5371 - closest read 506293 ( +59) 875:12715 ( +7344) (contained) saved region 934:5371 - closest 5' read 506293 ( +59) 875:12715 ( +7344) saved region 934:5371 - closest 3' read 242545 ( +591) 343:5700 ( +329) search for confused edges: discard region 934:5371 - no confusion in best edges Annotating repeats in reads for tig 382/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 18:3471 - contained in read 275934 0- 5736 discard region 11552:12326 - contained in read 311930 7804- 14362 discard region 12691:14049 - contained in read 480036 8729- 15793 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 383/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:5199 - contained in read 289058 0- 6326 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 387/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6763 - closest 5' read 426721 ( +0) 0:6761 ( -2) saved region 0:6763 - closest 3' read 307445 ( -5886) 5886:7398 ( +635) search for confused edges: tig 387 read 307445 pos 5886-7398 IS confused by 5' edge to read 195794 - best edge read 426721 len 875 erate 0.0252 score 852.95 - alt edge len 869 erate 0.0231 score 848.93 - absdiff 4.02 percdiff 0.4729 saved region 0:6763 - 1 best edges are potentially confused break tig 387 into up to 2 pieces: 0 7263 repeat (length 7263) 7263 7398 unique (length 135) Creating Unitig 90713 Creating Unitig 90714 For tig 387 repeat region 0 7263 - 4/ 0 reads repeat/unique - unitig 90713 created. For tig 387 unique region 7263 7398 - 0/ 1 reads repeat/unique - unitig 90714 created. Annotating repeats in reads for tig 389/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 391/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:3104 - contained in read 276439 0- 5945 discard region 11901:15288 - contained in read 353291 10835- 16105 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 394/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 397/90584. Annotated with 182 overlaps. Scan reads to discard spanned repeats. discard region 18620:20340 - contained in read 142077 15251- 20856 thickest edges to the repeat regions: saved region 15178:17759 - closest 5' read 233522 ( +3222) 11956:17736 ( -23) saved region 15178:17759 - closest 3' read 142077 ( -73) 15251:20856 ( +3097) search for confused edges: tig 397 read 142077 pos 15251-20856 IS confused by 3' edge to read 315561 - best edge read 233522 len 2485 erate 0.0415 score 2381.87 - alt edge len 2475 erate 0.0393 score 2377.73 - absdiff 4.14 percdiff 0.1740 tig 397 read 142077 pos 15251-20856 IS confused by 3' edge to read 319484 - best edge read 233522 len 2485 erate 0.0415 score 2381.87 - alt edge len 1416 erate 0.0388 score 1361.06 - absdiff 1020.81 percdiff 54.5462 tig 397 read 142077 pos 15251-20856 IS confused by 3' edge to read 403100 - best edge read 233522 len 2485 erate 0.0415 score 2381.87 - alt edge len 2479 erate 0.0416 score 2375.87 - absdiff 6.00 percdiff 0.2522 saved region 15178:17759 - 3 best edges are potentially confused break tig 397 into up to 3 pieces: 0 14678 unique (length 14678) 14678 18259 repeat (length 3581) 18259 22098 unique (length 3839) Creating Unitig 90715 Creating Unitig 90716 Creating Unitig 90717 For tig 397 unique region 0 14678 - 0/ 17 reads repeat/unique - unitig 90715 created. For tig 397 repeat region 14678 18259 - 21/ 0 reads repeat/unique - unitig 90716 created. For tig 397 unique region 18259 22098 - 0/ 9 reads repeat/unique - unitig 90717 created. Annotating repeats in reads for tig 400/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 5086:6515 - contained in read 78849 337- 9514 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 402/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 404/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6006:5441 - contained in read 80461 0- 6784 discard region 6254:5684 - contained in read 80461 0- 6784 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 409/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 9:2264 - contained in read 435835 0- 7560 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 410/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 414/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2217:5955 - contained in read 481993 0- 5955 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 416/90584. Annotated with 108 overlaps. Scan reads to discard spanned repeats. discard region 14455:15616 - contained in read 527271 10023- 16414 discard region 15742:16408 - contained in read 440655 14142- 20774 discard region 20169:22840 - contained in read 498110 17961- 23393 thickest edges to the repeat regions: saved region 2931:8843 - closest 5' read 445114 ( +2892) 39:8537 ( -306) saved region 2931:8843 - closest 3' read 52507 ( -5134) 8065:13082 ( +4239) search for confused edges: tig 416 read 445114 pos 39-8537 IS confused by 5' edge to read 9341 - best edge read 528400 len 5554 erate 0.0096 score 5500.68 - alt edge len 3742 erate 0.0332 score 3617.77 - absdiff 1882.92 percdiff 41.2990 tig 416 read 445114 pos 39-8537 IS confused by 5' edge to read 103789 - best edge read 528400 len 5554 erate 0.0096 score 5500.68 - alt edge len 5137 erate 0.0209 score 5029.64 - absdiff 471.04 percdiff 8.9465 tig 416 read 445114 pos 39-8537 NOT confused by 5' edge to read 265866 - best edge read 528400 len 5554 erate 0.0096 score 5500.68 - alt edge len 825 erate 0.0172 score 810.81 - absdiff 4689.87 percdiff 148.6137 tig 416 read 445114 pos 39-8537 IS confused by 5' edge to read 282460 - best edge read 528400 len 5554 erate 0.0096 score 5500.68 - alt edge len 4397 erate 0.0194 score 4311.70 - absdiff 1188.98 percdiff 24.2344 tig 416 read 445114 pos 39-8537 IS confused by 5' edge to read 318047 - best edge read 528400 len 5554 erate 0.0096 score 5500.68 - alt edge len 4015 erate 0.0105 score 3972.84 - absdiff 1527.84 percdiff 32.2549 tig 416 read 445114 pos 39-8537 IS confused by 5' edge to read 318048 - best edge read 528400 len 5554 erate 0.0096 score 5500.68 - alt edge len 4004 erate 0.0085 score 3969.97 - absdiff 1530.72 percdiff 32.3255 tig 416 read 445114 pos 39-8537 NOT confused by 5' edge to read 440654 - best edge read 528400 len 5554 erate 0.0096 score 5500.68 - alt edge len 1035 erate 0.0196 score 1014.71 - absdiff 4485.97 percdiff 137.7036 tig 416 read 528400 pos 2962-8750 IS confused by 3' edge to read 9341 - best edge read 315734 len 5558 erate 0.0067 score 5520.76 - alt edge len 3980 erate 0.0330 score 3848.66 - absdiff 1672.10 percdiff 35.6927 tig 416 read 528400 pos 2962-8750 IS confused by 3' edge to read 103789 - best edge read 315734 len 5558 erate 0.0067 score 5520.76 - alt edge len 5370 erate 0.0216 score 5254.01 - absdiff 266.75 percdiff 4.9514 tig 416 read 528400 pos 2962-8750 NOT confused by 3' edge to read 265866 - best edge read 315734 len 5558 erate 0.0067 score 5520.76 - alt edge len 1035 erate 0.0146 score 1019.89 - absdiff 4500.87 percdiff 137.6277 tig 416 read 528400 pos 2962-8750 IS confused by 3' edge to read 282460 - best edge read 315734 len 5558 erate 0.0067 score 5520.76 - alt edge len 4634 erate 0.0187 score 4547.34 - absdiff 973.42 percdiff 19.3367 tig 416 read 528400 pos 2962-8750 IS confused by 3' edge to read 318047 - best edge read 315734 len 5558 erate 0.0067 score 5520.76 - alt edge len 4253 erate 0.0097 score 4211.75 - absdiff 1309.02 percdiff 26.8999 tig 416 read 528400 pos 2962-8750 IS confused by 3' edge to read 318048 - best edge read 315734 len 5558 erate 0.0067 score 5520.76 - alt edge len 4241 erate 0.0081 score 4206.65 - absdiff 1314.11 percdiff 27.0188 tig 416 read 528400 pos 2962-8750 NOT confused by 3' edge to read 440654 - best edge read 315734 len 5558 erate 0.0067 score 5520.76 - alt edge len 1245 erate 0.0154 score 1225.83 - absdiff 4294.93 percdiff 127.3217 tig 416 read 528400 pos 2962-8750 NOT confused by 3' edge to read 440655 - best edge read 315734 len 5558 erate 0.0067 score 5520.76 - alt edge len 541 erate 0.0111 score 534.99 - absdiff 4985.77 percdiff 164.6621 tig 416 read 315734 pos 3203-8806 NOT confused by 5' edge to read 354133 - best edge read 528400 len 5547 erate 0.0067 score 5509.84 - alt edge len 2781 erate 0.0337 score 2687.28 - absdiff 2822.55 percdiff 68.8670 saved region 2931:8843 - 10 best edges are potentially confused break tig 416 into up to 3 pieces: 0 2431 unique (length 2431) 2431 9343 repeat (length 6912) 9343 23393 unique (length 14050) Creating Unitig 90718 Creating Unitig 90719 Creating Unitig 90720 For tig 416 unique region 0 2431 - 0/ 5 reads repeat/unique - unitig 90718 created. For tig 416 repeat region 2431 9343 - 19/ 0 reads repeat/unique - unitig 90719 created. For tig 416 unique region 9343 23393 - 0/ 24 reads repeat/unique - unitig 90720 created. Annotating repeats in reads for tig 417/90584. Annotated with 502 overlaps. Scan reads to discard spanned repeats. discard region 0:5594 - contained in read 129683 0- 8733 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 419/90584. Annotated with 232 overlaps. Scan reads to discard spanned repeats. discard region 6695:6015 - contained in read 508299 0- 6627 discard region 7610:9366 - contained in read 308399 5988- 10264 discard region 12328:14401 - contained in read 436471 10585- 16370 discard region 15191:16370 - contained in read 436471 10585- 16370 thickest edges to the repeat regions: saved region 10321:12267 - closest 5' read 37448 ( +2575) 7746:12259 ( -8) saved region 10321:12267 - closest 3' read 436471 ( -264) 10585:16370 ( +4103) search for confused edges: tig 419 read 37446 pos 7751-12235 IS confused by 5' edge to read 68923 - best edge read 436471 len 1650 erate 0.0371 score 1588.78 - alt edge len 949 erate 0.0285 score 921.95 - absdiff 666.83 percdiff 53.1184 tig 419 read 37446 pos 7751-12235 IS confused by 5' edge to read 486039 - best edge read 436471 len 1650 erate 0.0371 score 1588.78 - alt edge len 968 erate 0.0331 score 935.96 - absdiff 652.83 percdiff 51.7142 saved region 10321:12267 - 2 best edges are potentially confused break tig 419 into up to 3 pieces: 0 9821 unique (length 9821) 9821 12767 repeat (length 2946) 12767 16370 unique (length 3603) Creating Unitig 90721 Creating Unitig 90722 For tig 419 unique region 0 9821 - 0/ 13 reads repeat/unique - unitig 90721 created. For tig 419 repeat region 9821 12767 - 0/ 0 repeat/unique reads - no new unitig created. For tig 419 unique region 12767 16370 - 0/ 4 reads repeat/unique - unitig 90722 created. Annotating repeats in reads for tig 421/90584. Annotated with 561 overlaps. Scan reads to discard spanned repeats. discard region 3400:2336 - contained in read 512964 0- 6738 discard region 4290:9971 - contained in read 500202 696- 9971 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 428/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 30366:31669 - closest 5' read 17726 ( +5768) 24598:31434 ( -235) saved region 30366:31669 - closest 3' read 398238 ( -468) 30834:36216 ( +4547) search for confused edges: tig 428 read 17727 pos 24581-31370 IS confused by 3' edge to read 474832 - best edge read 398238 len 536 erate 0.0392 score 514.99 - alt edge len 949 erate 0.0380 score 912.94 - absdiff 397.95 percdiff 55.7380 saved region 30366:31669 - 1 best edges are potentially confused break tig 428 into up to 3 pieces: 0 29866 unique (length 29866) 29866 32169 repeat (length 2303) 32169 36216 unique (length 4047) Creating Unitig 90723 Creating Unitig 90724 For tig 428 unique region 0 29866 - 0/ 26 reads repeat/unique - unitig 90723 created. For tig 428 repeat region 29866 32169 - 0/ 0 repeat/unique reads - no new unitig created. For tig 428 unique region 32169 36216 - 0/ 1 reads repeat/unique - unitig 90724 created. Annotating repeats in reads for tig 429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 430/90584. Annotated with 713 overlaps. Scan reads to discard spanned repeats. discard region 19384:20381 - contained in read 200278 14819- 22424 discard region 20451:23562 - contained in read 2992 19102- 25491 thickest edges to the repeat regions: saved region 10643:18442 - closest 5' read 394729 ( +1651) 8992:18337 ( -105) saved region 10643:18442 - closest 3' read 200278 ( -4176) 14819:22424 ( +3982) search for confused edges: tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 6176 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2946 erate 0.0282 score 2862.92 - absdiff 557.63 percdiff 17.7491 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 6177 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2891 erate 0.0259 score 2816.12 - absdiff 604.43 percdiff 19.3830 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 9556 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 3472 erate 0.0301 score 3367.49 - absdiff 53.06 percdiff 1.5633 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 11918 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 528 erate 0.0342 score 509.94 - absdiff 2910.61 percdiff 148.1040 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 11919 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 574 erate 0.0261 score 559.02 - absdiff 2861.53 percdiff 143.8112 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 39725 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2671 erate 0.0217 score 2613.04 - absdiff 807.51 percdiff 26.7672 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 51583 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2660 erate 0.0237 score 2596.96 - absdiff 823.59 percdiff 27.3732 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 81370 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2281 erate 0.0320 score 2208.01 - absdiff 1212.54 percdiff 43.0854 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 93657 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 711 erate 0.0295 score 690.03 - absdiff 2730.53 percdiff 132.8537 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 100374 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 3180 erate 0.0338 score 3072.52 - absdiff 348.04 percdiff 10.7202 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 121025 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2362 erate 0.0275 score 2297.05 - absdiff 1123.51 percdiff 39.3000 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 124233 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 1856 erate 0.0264 score 1807.00 - absdiff 1613.55 percdiff 61.7325 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 209257 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 744 erate 0.0161 score 732.02 - absdiff 2688.53 percdiff 129.4874 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 209259 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 1066 erate 0.0244 score 1039.99 - absdiff 2380.56 percdiff 106.7387 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 258664 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2082 erate 0.0235 score 2033.07 - absdiff 1387.48 percdiff 50.8828 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 258669 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2079 erate 0.0241 score 2028.90 - absdiff 1391.66 percdiff 51.0751 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 264038 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 1176 erate 0.0213 score 1150.95 - absdiff 2269.60 percdiff 99.2934 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 326611 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2346 erate 0.0248 score 2287.82 - absdiff 1132.73 percdiff 39.6867 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 361754 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 1160 erate 0.0138 score 1143.99 - absdiff 2276.56 percdiff 99.7497 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 362314 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 924 erate 0.0325 score 893.97 - absdiff 2526.58 percdiff 117.1199 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 362315 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 917 erate 0.0349 score 885.00 - absdiff 2535.55 percdiff 117.7808 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 378862 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 839 erate 0.0226 score 820.04 - absdiff 2600.51 percdiff 122.6486 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 383582 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 3309 erate 0.0237 score 3230.58 - absdiff 189.97 percdiff 5.7126 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 383583 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 3509 erate 0.0174 score 3447.94 - absdiff 27.39 percdiff 0.7976 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 398107 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 3248 erate 0.0330 score 3140.82 - absdiff 279.74 percdiff 8.5267 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 402645 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2990 erate 0.0238 score 2918.84 - absdiff 501.71 percdiff 15.8284 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 402648 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 3001 erate 0.0303 score 2910.07 - absdiff 510.48 percdiff 16.1274 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 407643 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 988 erate 0.0368 score 951.64 - absdiff 2468.91 percdiff 112.9369 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 407648 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 1000 erate 0.0270 score 973.00 - absdiff 2447.55 percdiff 111.4156 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 423011 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 3517 erate 0.0177 score 3454.75 - absdiff 34.20 percdiff 0.9948 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 458079 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2607 erate 0.0231 score 2546.78 - absdiff 873.77 percdiff 29.2852 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 458080 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2486 erate 0.0201 score 2436.03 - absdiff 984.52 percdiff 33.6210 tig 430 read 200278 pos 14819-22424 NOT confused by 5' edge to read 467700 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 668 erate 0.0316 score 646.89 - absdiff 2773.66 percdiff 136.3835 tig 430 read 200278 pos 14819-22424 IS confused by 5' edge to read 490545 - best edge read 394729 len 3518 erate 0.0277 score 3420.55 - alt edge len 2142 erate 0.0285 score 2080.95 - absdiff 1339.60 percdiff 48.6993 saved region 10643:18442 - 21 best edges are potentially confused break tig 430 into up to 3 pieces: 0 10143 unique (length 10143) 10143 18942 repeat (length 8799) 18942 25493 unique (length 6551) Creating Unitig 90725 Creating Unitig 90726 Creating Unitig 90727 For tig 430 unique region 0 10143 - 0/ 13 reads repeat/unique - unitig 90725 created. For tig 430 repeat region 10143 18942 - 5/ 0 reads repeat/unique - unitig 90726 created. For tig 430 unique region 18942 25493 - 0/ 11 reads repeat/unique - unitig 90727 created. Annotating repeats in reads for tig 431/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 433/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 10302:10991 - contained in read 26411 6042- 13521 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 435/90584. Annotated with 1067 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 551:12336 - closest 5' read 502484 ( +551) 0:5695 ( -6641) saved region 551:12336 - closest 3' read 19297 ( -6210) 6761:12336 ( +0) search for confused edges: tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 6176 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1424 erate 0.0300 score 1381.28 - absdiff 5713.62 percdiff 134.8159 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 6177 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1369 erate 0.0297 score 1328.34 - absdiff 5766.56 percdiff 136.9202 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 9556 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1951 erate 0.0327 score 1887.20 - absdiff 5207.70 percdiff 115.9572 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 15260 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1099 erate 0.0265 score 1069.88 - absdiff 6025.02 percdiff 147.5857 tig 435 read 264038 pos 4394-11652 IS confused by 3' edge to read 36821 - best edge read 502484 len 1301 erate 0.0354 score 1254.94 - alt edge len 1298 erate 0.0394 score 1246.86 - absdiff 8.09 percdiff 0.6464 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 39725 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1141 erate 0.0299 score 1106.88 - absdiff 5988.01 percdiff 146.0174 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 51583 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1130 erate 0.0275 score 1098.92 - absdiff 5995.97 percdiff 146.3535 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 97422 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1995 erate 0.0291 score 1936.95 - absdiff 5157.95 percdiff 114.2170 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 100374 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1663 erate 0.0322 score 1609.45 - absdiff 5485.45 percdiff 126.0392 tig 435 read 264038 pos 4394-11652 IS confused by 3' edge to read 184649 - best edge read 502484 len 1301 erate 0.0354 score 1254.94 - alt edge len 1012 erate 0.0418 score 969.70 - absdiff 285.25 percdiff 25.6442 tig 435 read 264038 pos 4394-11652 IS confused by 3' edge to read 193774 - best edge read 502484 len 1301 erate 0.0354 score 1254.94 - alt edge len 795 erate 0.0341 score 767.89 - absdiff 487.05 percdiff 48.1556 tig 435 read 264038 pos 4394-11652 IS confused by 3' edge to read 200277 - best edge read 502484 len 1301 erate 0.0354 score 1254.94 - alt edge len 1060 erate 0.0377 score 1020.04 - absdiff 234.91 percdiff 20.6513 tig 435 read 264038 pos 4394-11652 IS confused by 3' edge to read 200278 - best edge read 502484 len 1301 erate 0.0354 score 1254.94 - alt edge len 1182 erate 0.0213 score 1156.82 - absdiff 98.12 percdiff 8.1369 tig 435 read 264038 pos 4394-11652 IS confused by 3' edge to read 225280 - best edge read 502484 len 1301 erate 0.0354 score 1254.94 - alt edge len 1009 erate 0.0250 score 983.77 - absdiff 271.17 percdiff 24.2254 tig 435 read 264038 pos 4394-11652 IS confused by 3' edge to read 238832 - best edge read 502484 len 1301 erate 0.0354 score 1254.94 - alt edge len 751 erate 0.0348 score 724.87 - absdiff 530.08 percdiff 53.5485 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 258664 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 544 erate 0.0335 score 525.78 - absdiff 6569.12 percdiff 172.4027 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 258669 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 541 erate 0.0204 score 529.96 - absdiff 6564.93 percdiff 172.1981 tig 435 read 264038 pos 4394-11652 IS confused by 3' edge to read 289935 - best edge read 502484 len 1301 erate 0.0354 score 1254.94 - alt edge len 1299 erate 0.0324 score 1256.91 - absdiff 1.97 percdiff 0.1567 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 383582 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1792 erate 0.0291 score 1739.85 - absdiff 5355.05 percdiff 121.2269 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 383583 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1988 erate 0.0214 score 1945.46 - absdiff 5149.44 percdiff 113.9212 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 394729 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1997 erate 0.0307 score 1935.69 - absdiff 5159.21 percdiff 114.2607 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 398107 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1731 erate 0.0321 score 1675.43 - absdiff 5419.46 percdiff 123.5863 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 402645 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1468 erate 0.0313 score 1422.05 - absdiff 5672.85 percdiff 133.2131 tig 435 read 264038 pos 4394-11652 IS confused by 3' edge to read 414390 - best edge read 502484 len 1301 erate 0.0354 score 1254.94 - alt edge len 1250 erate 0.0336 score 1208.00 - absdiff 46.94 percdiff 3.8121 tig 435 read 264038 pos 4394-11652 IS confused by 3' edge to read 443010 - best edge read 502484 len 1301 erate 0.0354 score 1254.94 - alt edge len 783 erate 0.0230 score 764.99 - absdiff 489.95 percdiff 48.5118 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 458079 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 1075 erate 0.0300 score 1042.75 - absdiff 6052.15 percdiff 148.7444 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 458080 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 954 erate 0.0275 score 927.76 - absdiff 6167.13 percdiff 153.7428 tig 435 read 264038 pos 4394-11652 NOT confused by 5' edge to read 490545 - best edge read 43611 len 7236 erate 0.0195 score 7094.90 - alt edge len 606 erate 0.0215 score 592.97 - absdiff 6501.93 percdiff 169.1477 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 6176 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1427 erate 0.0233 score 1393.75 - absdiff 3410.64 percdiff 110.0536 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 6177 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1372 erate 0.0227 score 1340.86 - absdiff 3463.53 percdiff 112.7224 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 9555 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 2039 erate 0.0341 score 1969.47 - absdiff 2834.92 percdiff 83.7017 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 9556 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1954 erate 0.0289 score 1897.53 - absdiff 2906.86 percdiff 86.7470 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 15260 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1114 erate 0.0215 score 1090.05 - absdiff 3714.34 percdiff 126.0286 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 39725 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1152 erate 0.0217 score 1127.00 - absdiff 3677.38 percdiff 123.9974 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 51583 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1142 erate 0.0210 score 1118.02 - absdiff 3686.37 percdiff 124.4889 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 81370 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 762 erate 0.0395 score 731.90 - absdiff 4072.49 percdiff 147.1197 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 97422 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1997 erate 0.0233 score 1950.47 - absdiff 2853.92 percdiff 84.4997 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 100374 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1664 erate 0.0251 score 1622.23 - absdiff 3182.15 percdiff 99.0304 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 121025 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 842 erate 0.0416 score 806.97 - absdiff 3997.41 percdiff 142.4758 tig 435 read 43611 pos 4467-11669 NOT confused by 3' edge to read 225280 - best edge read 264038 len 7185 erate 0.0195 score 7044.89 - alt edge len 993 erate 0.0276 score 965.59 - absdiff 6079.30 percdiff 151.7835 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 326611 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 826 erate 0.0327 score 798.99 - absdiff 4005.40 percdiff 142.9637 tig 435 read 43611 pos 4467-11669 NOT confused by 3' edge to read 327014 - best edge read 264038 len 7185 erate 0.0195 score 7044.89 - alt edge len 509 erate 0.0337 score 491.85 - absdiff 6553.05 percdiff 173.8960 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 383582 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1793 erate 0.0226 score 1752.48 - absdiff 3051.91 percdiff 93.0905 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 383583 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1991 erate 0.0147 score 1961.73 - absdiff 2842.65 percdiff 84.0261 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 394729 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 2003 erate 0.0258 score 1951.32 - absdiff 2853.06 percdiff 84.4638 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 394730 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1991 erate 0.0332 score 1924.90 - absdiff 2879.49 percdiff 85.5808 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 398107 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1732 erate 0.0266 score 1685.93 - absdiff 3118.46 percdiff 96.0957 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 402645 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1471 erate 0.0255 score 1433.49 - absdiff 3370.90 percdiff 108.0784 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 402648 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1482 erate 0.0302 score 1437.24 - absdiff 3367.14 percdiff 107.8931 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 423011 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1998 erate 0.0171 score 1963.83 - absdiff 2840.55 percdiff 83.9379 tig 435 read 43611 pos 4467-11669 NOT confused by 3' edge to read 443010 - best edge read 264038 len 7185 erate 0.0195 score 7044.89 - alt edge len 765 erate 0.0290 score 742.81 - absdiff 6302.08 percdiff 161.8468 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 458079 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 1089 erate 0.0249 score 1061.88 - absdiff 3742.50 percdiff 127.5939 tig 435 read 43611 pos 4467-11669 NOT confused by 5' edge to read 458080 - best edge read 19297 len 4974 erate 0.0341 score 4804.39 - alt edge len 968 erate 0.0229 score 945.83 - absdiff 3858.55 percdiff 134.2054 saved region 551:12336 - 10 best edges are potentially confused break tig 435 into up to 2 pieces: 0 51 unique (length 51) 51 12336 repeat (length 12285) Creating Unitig 90728 Creating Unitig 90729 For tig 435 unique region 0 51 - 0/ 1 reads repeat/unique - unitig 90728 created. For tig 435 repeat region 51 12336 - 50/ 0 reads repeat/unique - unitig 90729 created. Annotating repeats in reads for tig 436/90584. Annotated with 525 overlaps. Scan reads to discard spanned repeats. discard region 0:5681 - contained in read 68302 0- 8214 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 438/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5685:10631 - closest read 260452 ( +2548) 3137:10646 ( +15) (contained) saved region 5685:10631 - closest read 415698 ( +2034) 3651:10646 ( +15) (contained) saved region 5685:10631 - closest read 16340 ( +252) 5433:12074 ( +1443) (contained) saved region 5685:10631 - closest 5' read 16340 ( +252) 5433:12074 ( +1443) saved region 5685:10631 - closest 3' read 260452 ( +2548) 3137:10646 ( +15) search for confused edges: discard region 5685:10631 - no confusion in best edges Annotating repeats in reads for tig 439/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 1394:4695 - contained in read 27591 0- 5403 discard region 5577:9051 - contained in read 162174 3656- 9734 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 440/90584. Annotated with 111 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2657:7721 - closest 5' read 267294 ( +2657) 0:6156 ( -1565) saved region 2657:7721 - closest 3' read 178051 ( -342) 2999:8804 ( +1083) saved region 8192:19145 - closest 5' read 236089 ( +278) 7914:16473 ( -2672) saved region 8192:19145 - closest 3' read 256192 ( -6293) 14485:19238 ( +93) search for confused edges: tig 440 read 178052 pos 2977-7343 IS confused by 5' edge to read 22199 - best edge read 267294 len 3179 erate 0.0317 score 3078.23 - alt edge len 1727 erate 0.0307 score 1673.98 - absdiff 1404.24 percdiff 59.0986 tig 440 read 178051 pos 2999-8804 NOT confused by 3' edge to read 22199 - best edge read 178052 len 4344 erate 0.0323 score 4203.69 - alt edge len 1714 erate 0.0385 score 1648.01 - absdiff 2555.68 percdiff 87.3482 tig 440 read 236089 pos 7914-16473 NOT confused by 5' edge to read 46257 - best edge read 344670 len 7296 erate 0.0113 score 7213.56 - alt edge len 1976 erate 0.0142 score 1947.94 - absdiff 5265.61 percdiff 114.9510 tig 440 read 236089 pos 7914-16473 NOT confused by 5' edge to read 46258 - best edge read 344670 len 7296 erate 0.0113 score 7213.56 - alt edge len 1974 erate 0.0188 score 1936.89 - absdiff 5276.67 percdiff 115.3314 tig 440 read 236089 pos 7914-16473 NOT confused by 5' edge to read 52030 - best edge read 344670 len 7296 erate 0.0113 score 7213.56 - alt edge len 907 erate 0.0122 score 895.93 - absdiff 6317.62 percdiff 155.8081 tig 440 read 236089 pos 7914-16473 NOT confused by 5' edge to read 159203 - best edge read 344670 len 7296 erate 0.0113 score 7213.56 - alt edge len 2199 erate 0.0228 score 2148.86 - absdiff 5064.69 percdiff 108.1920 saved region 2657:7721 - 1 best edges are potentially confused discard region 8192:19145 - no confusion in best edges break tig 440 into up to 3 pieces: 0 2157 unique (length 2157) 2157 8221 repeat (length 6064) 8221 23510 unique (length 15289) Creating Unitig 90730 Creating Unitig 90731 Creating Unitig 90732 For tig 440 unique region 0 2157 - 0/ 3 reads repeat/unique - unitig 90730 created. For tig 440 repeat region 2157 8221 - 3/ 0 reads repeat/unique - unitig 90731 created. For tig 440 unique region 8221 23510 - 0/ 52 reads repeat/unique - unitig 90732 created. Annotating repeats in reads for tig 441/90584. Annotated with 55 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4810:5961 - closest read 31976 ( +4795) 15:5965 ( +4) (contained) saved region 4810:5961 - closest 5' read 31976 ( +4795) 15:5965 ( +4) saved region 4810:5961 - closest 3' read 31976 ( +4795) 15:5965 ( +4) saved region 15133:18555 - closest 5' read 404036 ( +3609) 11524:15892 ( -2663) saved region 15133:18555 - closest 3' read 340517 ( -4) 15137:22248 ( +3693) search for confused edges: tig 441 read 31972 pos 10-5942 IS confused by 5' edge to read 51661 - best edge read 496730 len 1045 erate 0.0421 score 1001.01 - alt edge len 694 erate 0.0347 score 669.92 - absdiff 331.09 percdiff 39.6293 tig 441 read 31972 pos 10-5942 IS confused by 5' edge to read 51662 - best edge read 496730 len 1045 erate 0.0421 score 1001.01 - alt edge len 695 erate 0.0346 score 670.95 - absdiff 330.05 percdiff 39.4809 tig 441 read 31972 pos 10-5942 IS confused by 5' edge to read 51663 - best edge read 496730 len 1045 erate 0.0421 score 1001.01 - alt edge len 692 erate 0.0378 score 665.84 - absdiff 335.16 percdiff 40.2152 tig 441 read 31972 pos 10-5942 IS confused by 5' edge to read 328644 - best edge read 496730 len 1045 erate 0.0421 score 1001.01 - alt edge len 634 erate 0.0412 score 607.88 - absdiff 393.13 percdiff 48.8694 saved region 4810:5961 - 4 best edges are potentially confused discard region 15133:18555 - no confusion in best edges break tig 441 into up to 3 pieces: 0 4310 unique (length 4310) 4310 6461 repeat (length 2151) 6461 26036 unique (length 19575) Creating Unitig 90733 Creating Unitig 90734 For tig 441 unique region 0 4310 - 0/ 8 reads repeat/unique - unitig 90733 created. For tig 441 repeat region 4310 6461 - 0/ 0 repeat/unique reads - no new unitig created. For tig 441 unique region 6461 26036 - 0/ 22 reads repeat/unique - unitig 90734 created. Annotating repeats in reads for tig 442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 443/90584. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 14795:16880 - contained in read 36525 12789- 19638 discard region 17536:19638 - contained in read 36525 12789- 19638 thickest edges to the repeat regions: saved region 56:10726 - closest 5' read 36524 ( +56) 0:6882 ( -3844) saved region 56:10726 - closest 3' read 529697 ( -4422) 4478:10810 ( +84) saved region 11651:13339 - closest 5' read 330886 ( +2854) 8797:13333 ( -6) saved region 11651:13339 - closest 3' read 36525 ( -1138) 12789:19638 ( +6299) search for confused edges: tig 443 read 36526 pos 421-7001 IS confused by 3' edge to read 36525 - best edge read 36524 len 6461 erate 0.0297 score 6269.11 - alt edge len 6446 erate 0.0258 score 6279.69 - absdiff 10.58 percdiff 0.1687 tig 443 read 36526 pos 421-7001 NOT confused by 3' edge to read 330886 - best edge read 36524 len 6461 erate 0.0297 score 6269.11 - alt edge len 958 erate 0.0418 score 917.96 - absdiff 5351.15 percdiff 148.9107 tig 443 read 529700 pos 4451-9378 IS confused by 5' edge to read 36525 - best edge read 36526 len 2550 erate 0.0289 score 2476.30 - alt edge len 2412 erate 0.0323 score 2334.09 - absdiff 142.21 percdiff 5.9127 tig 443 read 36525 pos 12789-19638 IS confused by 5' edge to read 529697 - best edge read 330886 len 544 erate 0.0331 score 525.99 - alt edge len 507 erate 0.0239 score 494.88 - absdiff 31.11 percdiff 6.0949 saved region 56:10726 - 2 best edges are potentially confused saved region 11651:13339 - 1 best edges are potentially confused merge extended regions 0:11226 and 11151:13839 break tig 443 into up to 2 pieces: 0 13839 repeat (length 13839) 13839 19638 unique (length 5799) Creating Unitig 90735 Creating Unitig 90736 For tig 443 repeat region 0 13839 - 17/ 0 reads repeat/unique - unitig 90735 created. For tig 443 unique region 13839 19638 - 0/ 3 reads repeat/unique - unitig 90736 created. Annotating repeats in reads for tig 444/90584. Annotated with 998 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3:8088 - closest 5' read 39725 ( +3) 0:6590 ( -1498) saved region 3:8088 - closest 3' read 459664 ( -2248) 2251:8098 ( +10) search for confused edges: tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 15260 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2840 erate 0.0309 score 2752.24 - absdiff 1454.42 percdiff 41.8002 tig 444 read 39725 pos 0-6590 NOT confused by 3' edge to read 19297 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 1832 erate 0.0310 score 1775.21 - absdiff 2431.45 percdiff 81.2941 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 36821 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2800 erate 0.0258 score 2727.76 - absdiff 1478.90 percdiff 42.6539 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 41614 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2170 erate 0.0270 score 2111.41 - absdiff 2095.25 percdiff 66.3256 tig 444 read 39725 pos 0-6590 NOT confused by 3' edge to read 43611 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 1153 erate 0.0217 score 1127.98 - absdiff 3078.68 percdiff 115.4222 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 184649 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2515 erate 0.0253 score 2451.37 - absdiff 1755.29 percdiff 52.7270 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 193774 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2296 erate 0.0318 score 2222.99 - absdiff 1983.67 percdiff 61.7039 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 200277 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2564 erate 0.0302 score 2486.57 - absdiff 1720.09 percdiff 51.3980 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 200278 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2685 erate 0.0217 score 2626.74 - absdiff 1579.93 percdiff 46.2413 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 238832 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2250 erate 0.0391 score 2162.03 - absdiff 2044.64 percdiff 64.2090 tig 444 read 39725 pos 0-6590 NOT confused by 3' edge to read 264038 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 1136 erate 0.0299 score 1102.03 - absdiff 3104.63 percdiff 116.9639 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 289935 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2801 erate 0.0248 score 2731.54 - absdiff 1475.13 percdiff 42.5219 tig 444 read 39725 pos 0-6590 NOT confused by 3' edge to read 366916 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 1509 erate 0.0282 score 1466.45 - absdiff 2740.21 percdiff 96.6037 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 369722 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 3029 erate 0.0311 score 2934.80 - absdiff 1271.86 percdiff 35.6191 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 369723 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2909 erate 0.0253 score 2835.40 - absdiff 1371.26 percdiff 38.9448 tig 444 read 39725 pos 0-6590 NOT confused by 3' edge to read 400747 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 1295 erate 0.0314 score 1254.34 - absdiff 2952.32 percdiff 108.1240 tig 444 read 39725 pos 0-6590 NOT confused by 3' edge to read 400749 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 1300 erate 0.0273 score 1264.51 - absdiff 2942.15 percdiff 107.5510 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 423011 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2854 erate 0.0285 score 2772.66 - absdiff 1434.00 percdiff 41.0928 tig 444 read 39725 pos 0-6590 NOT confused by 3' edge to read 433344 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 990 erate 0.0400 score 950.40 - absdiff 3256.26 percdiff 126.2836 tig 444 read 39725 pos 0-6590 NOT confused by 3' edge to read 435911 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 1043 erate 0.0346 score 1006.91 - absdiff 3199.75 percdiff 122.7469 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 440902 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 4257 erate 0.0398 score 4087.57 - absdiff 119.09 percdiff 2.8716 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 443010 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2284 erate 0.0176 score 2243.80 - absdiff 1962.86 percdiff 60.8595 tig 444 read 39725 pos 0-6590 NOT confused by 3' edge to read 445536 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2123 erate 0.0327 score 2053.58 - absdiff 2153.08 percdiff 68.7860 tig 444 read 39725 pos 0-6590 IS confused by 3' edge to read 502485 - best edge read 459664 len 4339 erate 0.0305 score 4206.66 - alt edge len 2934 erate 0.0382 score 2821.92 - absdiff 1384.74 percdiff 39.4031 tig 444 read 147282 pos 3014-8236 NOT confused by 3' edge to read 9556 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 690 erate 0.0362 score 665.02 - absdiff 4149.59 percdiff 151.4550 tig 444 read 147282 pos 3014-8236 IS confused by 3' edge to read 51583 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 3481 erate 0.0287 score 3381.10 - absdiff 1433.51 percdiff 34.9821 tig 444 read 147282 pos 3014-8236 NOT confused by 3' edge to read 83618 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 1340 erate 0.0449 score 1279.83 - absdiff 3534.78 percdiff 116.0000 tig 444 read 147282 pos 3014-8236 NOT confused by 3' edge to read 93657 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 1557 erate 0.0328 score 1505.93 - absdiff 3308.68 percdiff 104.6961 tig 444 read 147282 pos 3014-8236 NOT confused by 3' edge to read 97422 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 734 erate 0.0341 score 708.97 - absdiff 4105.64 percdiff 148.6586 tig 444 read 147282 pos 3014-8236 IS confused by 3' edge to read 121025 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 3181 erate 0.0314 score 3081.12 - absdiff 1733.49 percdiff 43.9097 tig 444 read 147282 pos 3014-8236 NOT confused by 3' edge to read 184649 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 1041 erate 0.0361 score 1003.42 - absdiff 3811.19 percdiff 131.0131 tig 444 read 147282 pos 3014-8236 IS confused by 3' edge to read 326611 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 3165 erate 0.0288 score 3073.85 - absdiff 1740.76 percdiff 44.1344 tig 444 read 147282 pos 3014-8236 NOT confused by 3' edge to read 361754 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 2000 erate 0.0205 score 1959.00 - absdiff 2855.61 percdiff 84.3157 tig 444 read 147282 pos 3014-8236 IS confused by 3' edge to read 366916 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 4952 erate 0.0309 score 4798.98 - absdiff 15.63 percdiff 0.3251 tig 444 read 147282 pos 3014-8236 NOT confused by 3' edge to read 394729 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 736 erate 0.0395 score 706.93 - absdiff 4107.68 percdiff 148.7876 tig 444 read 147282 pos 3014-8236 NOT confused by 3' edge to read 394730 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 726 erate 0.0360 score 699.86 - absdiff 4114.75 percdiff 149.2344 tig 444 read 147282 pos 3014-8236 IS confused by 3' edge to read 423011 - best edge read 459664 len 5010 erate 0.0390 score 4814.61 - alt edge len 4339 erate 0.0237 score 4236.17 - absdiff 578.44 percdiff 12.7822 saved region 3:8088 - 20 best edges are potentially confused Annotating repeats in reads for tig 445/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 3521:6778 - contained in read 147441 59- 7935 discard region 12701:17229 - contained in read 225278 11811- 18693 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 448/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7769:11176 - closest read 46373 ( +326) 7443:11190 ( +14) (contained) saved region 7769:11176 - closest 5' read 46373 ( +326) 7443:11190 ( +14) saved region 7769:11176 - closest 3' read 46373 ( +326) 7443:11190 ( +14) search for confused edges: discard region 7769:11176 - no confusion in best edges Annotating repeats in reads for tig 449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 452/90584. Annotated with 61 overlaps. Scan reads to discard spanned repeats. discard region 0:4852 - contained in read 159203 0- 7739 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 453/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 454/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 12901:13459 - contained in read 413331 11811- 19238 discard region 20355:22760 - contained in read 480094 14081- 23606 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 455/90584. Annotated with 68 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5302:11967 - closest 5' read 292241 ( +0) 5302:11073 ( -894) saved region 5302:11967 - closest 3' read 201731 ( -3345) 8647:14437 ( +2470) search for confused edges: tig 455 read 292241 pos 5302-11073 IS confused by 5' edge to read 200324 - best edge read 201731 len 2426 erate 0.0202 score 2376.99 - alt edge len 1104 erate 0.0389 score 1061.05 - absdiff 1315.94 percdiff 76.5516 tig 455 read 292241 pos 5302-11073 IS confused by 5' edge to read 407619 - best edge read 201731 len 2426 erate 0.0202 score 2376.99 - alt edge len 1466 erate 0.0375 score 1411.03 - absdiff 965.97 percdiff 51.0013 tig 455 read 292241 pos 5302-11073 IS confused by 5' edge to read 439565 - best edge read 201731 len 2426 erate 0.0202 score 2376.99 - alt edge len 664 erate 0.0377 score 638.97 - absdiff 1738.03 percdiff 115.2553 saved region 5302:11967 - 3 best edges are potentially confused break tig 455 into up to 3 pieces: 0 4802 unique (length 4802) 4802 12467 repeat (length 7665) 12467 22454 unique (length 9987) Creating Unitig 90737 Creating Unitig 90738 Creating Unitig 90739 For tig 455 unique region 0 4802 - 0/ 2 reads repeat/unique - unitig 90737 created. For tig 455 repeat region 4802 12467 - 5/ 0 reads repeat/unique - unitig 90738 created. For tig 455 unique region 12467 22454 - 0/ 25 reads repeat/unique - unitig 90739 created. Annotating repeats in reads for tig 457/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5819:12630 - closest 5' read 485485 ( +920) 4899:11913 ( -717) saved region 5819:12630 - closest 3' read 513304 ( -5244) 11063:16035 ( +3405) search for confused edges: discard region 5819:12630 - no confusion in best edges Annotating repeats in reads for tig 458/90584. Annotated with 272 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5882:6668 - closest read 60628 ( +5309) 573:6680 ( +12) (contained) saved region 5882:6668 - closest read 252148 ( +0) 5882:15183 ( +8515) (contained) saved region 5882:6668 - closest 5' read 252148 ( +0) 5882:15183 ( +8515) saved region 5882:6668 - closest 3' read 60628 ( +5309) 573:6680 ( +12) saved region 14582:22892 - closest 5' read 381096 ( +0) 14582:22565 ( -327) saved region 14582:22892 - closest 3' read 442129 ( -3064) 17646:23852 ( +960) search for confused edges: tig 458 read 381096 pos 14582-22565 IS confused by 3' edge to read 154923 - best edge read 442135 len 4910 erate 0.0326 score 4749.93 - alt edge len 4498 erate 0.0426 score 4306.39 - absdiff 443.55 percdiff 9.7953 tig 458 read 381096 pos 14582-22565 NOT confused by 3' edge to read 313746 - best edge read 442135 len 4910 erate 0.0326 score 4749.93 - alt edge len 2118 erate 0.0352 score 2043.45 - absdiff 2706.49 percdiff 79.6801 tig 458 read 381096 pos 14582-22565 NOT confused by 3' edge to read 359994 - best edge read 442135 len 4910 erate 0.0326 score 4749.93 - alt edge len 1143 erate 0.0359 score 1101.97 - absdiff 3647.97 percdiff 124.6763 tig 458 read 381096 pos 14582-22565 NOT confused by 3' edge to read 395007 - best edge read 442135 len 4910 erate 0.0326 score 4749.93 - alt edge len 2060 erate 0.0234 score 2011.80 - absdiff 2738.14 percdiff 80.9893 tig 458 read 381096 pos 14582-22565 NOT confused by 3' edge to read 499659 - best edge read 442135 len 4910 erate 0.0326 score 4749.93 - alt edge len 1622 erate 0.0253 score 1580.96 - absdiff 3168.97 percdiff 100.1113 tig 458 read 442135 pos 17655-23880 IS confused by 3' edge to read 395007 - best edge read 381096 len 4919 erate 0.0326 score 4758.64 - alt edge len 3387 erate 0.0253 score 3301.31 - absdiff 1457.33 percdiff 36.1623 discard region 5882:6668 - no confusion in best edges saved region 14582:22892 - 2 best edges are potentially confused break tig 458 into up to 3 pieces: 0 14082 unique (length 14082) 14082 23392 repeat (length 9310) 23392 23880 unique (length 488) Creating Unitig 90740 Creating Unitig 90741 Creating Unitig 90742 For tig 458 unique region 0 14082 - 0/ 14 reads repeat/unique - unitig 90740 created. For tig 458 repeat region 14082 23392 - 14/ 0 reads repeat/unique - unitig 90741 created. For tig 458 unique region 23392 23880 - 0/ 6 reads repeat/unique - unitig 90742 created. Annotating repeats in reads for tig 459/90584. Annotated with 253 overlaps. Scan reads to discard spanned repeats. discard region 23755:25780 - contained in read 61812 18614- 27567 thickest edges to the repeat regions: saved region 0:20269 - closest 5' read 111241 ( +0) 0:10943 ( -9326) saved region 0:20269 - closest 3' read 142228 (-14932) 14932:25342 ( +5073) search for confused edges: tig 459 read 351531 pos 964-11388 NOT confused by 5' edge to read 44522 - best edge read 111241 len 9979 erate 0.0132 score 9847.28 - alt edge len 3217 erate 0.0354 score 3103.12 - absdiff 6744.16 percdiff 104.1537 tig 459 read 198017 pos 4747-12846 NOT confused by 3' edge to read 85601 - best edge read 116989 len 8054 erate 0.0342 score 7778.55 - alt edge len 626 erate 0.0321 score 605.91 - absdiff 7172.65 percdiff 171.0939 tig 459 read 198017 pos 4747-12846 NOT confused by 5' edge to read 287237 - best edge read 351531 len 6641 erate 0.0225 score 6491.58 - alt edge len 981 erate 0.0368 score 944.90 - absdiff 5546.68 percdiff 149.1749 tig 459 read 116989 pos 4826-14660 NOT confused by 3' edge to read 287237 - best edge read 198017 len 8020 erate 0.0357 score 7733.69 - alt edge len 934 erate 0.0418 score 894.96 - absdiff 6838.73 percdiff 158.5122 discard region 0:20269 - no confusion in best edges Annotating repeats in reads for tig 460/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 462/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6345:14034 - closest read 394728 ( +155) 6190:14041 ( +7) (contained) saved region 6345:14034 - closest 5' read 394728 ( +155) 6190:14041 ( +7) saved region 6345:14034 - closest 3' read 394728 ( +155) 6190:14041 ( +7) search for confused edges: discard region 6345:14034 - no confusion in best edges Annotating repeats in reads for tig 464/90584. Annotated with 345 overlaps. Scan reads to discard spanned repeats. discard region 14012:22325 - contained in read 374809 11177- 23851 thickest edges to the repeat regions: saved region 974:13008 - closest 5' read 276910 ( +149) 825:12210 ( -798) saved region 974:13008 - closest 3' read 87456 (-10173) 11147:16934 ( +3926) saved region 22315:29102 - closest 5' read 195421 ( +809) 21506:27073 ( -2029) saved region 22315:29102 - closest 3' read 187188 ( -1268) 23583:30259 ( +1157) search for confused edges: tig 464 read 276910 pos 825-12210 IS confused by 5' edge to read 444472 - best edge read 374809 len 1033 erate 0.0273 score 1004.80 - alt edge len 1826 erate 0.0287 score 1773.59 - absdiff 768.79 percdiff 55.3410 saved region 974:13008 - 1 best edges are potentially confused discard region 22315:29102 - no confusion in best edges break tig 464 into up to 3 pieces: 0 474 unique (length 474) 474 13508 repeat (length 13034) 13508 30284 unique (length 16776) Creating Unitig 90743 Creating Unitig 90744 Creating Unitig 90745 For tig 464 unique region 0 474 - 0/ 8 reads repeat/unique - unitig 90743 created. For tig 464 repeat region 474 13508 - 45/ 0 reads repeat/unique - unitig 90744 created. For tig 464 unique region 13508 30284 - 0/ 165 reads repeat/unique - unitig 90745 created. Annotating repeats in reads for tig 466/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 2310:1588 - contained in read 80037 0- 6149 discard region 19170:22271 - contained in read 405331 14895- 25599 thickest edges to the repeat regions: saved region 3982:10387 - closest 5' read 203552 ( +2339) 1643:7085 ( -3302) saved region 3982:10387 - closest 3' read 339945 ( -852) 4834:12819 ( +2432) search for confused edges: discard region 3982:10387 - no confusion in best edges Annotating repeats in reads for tig 467/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 2497:0 - contained in read 375791 0- 7418 discard region 11258:13654 - contained in read 275369 9392- 15083 thickest edges to the repeat regions: saved region 3645:10767 - closest 5' read 375790 ( +3585) 60:7420 ( -3347) saved region 3645:10767 - closest 3' read 129392 ( -8) 3653:12325 ( +1558) search for confused edges: tig 467 read 375790 pos 60-7420 NOT confused by 5' edge to read 177384 - best edge read 129393 len 3704 erate 0.0232 score 3618.07 - alt edge len 1083 erate 0.0214 score 1059.82 - absdiff 2558.24 percdiff 109.3759 tig 467 read 375790 pos 60-7420 NOT confused by 5' edge to read 307455 - best edge read 129393 len 3704 erate 0.0232 score 3618.07 - alt edge len 1203 erate 0.0192 score 1179.90 - absdiff 2438.16 percdiff 101.6332 tig 467 read 129393 pos 3736-12351 IS confused by 5' edge to read 261149 - best edge read 375790 len 3684 erate 0.0232 score 3598.53 - alt edge len 4621 erate 0.0278 score 4492.54 - absdiff 894.00 percdiff 22.0986 saved region 3645:10767 - 1 best edges are potentially confused break tig 467 into up to 3 pieces: 0 3145 unique (length 3145) 3145 11267 repeat (length 8122) 11267 16517 unique (length 5250) Creating Unitig 90746 Creating Unitig 90747 Creating Unitig 90748 For tig 467 unique region 0 3145 - 0/ 3 reads repeat/unique - unitig 90746 created. For tig 467 repeat region 3145 11267 - 6/ 0 reads repeat/unique - unitig 90748 created. For tig 467 unique region 11267 16517 - 0/ 12 reads repeat/unique - unitig 90747 created. Annotating repeats in reads for tig 468/90584. Annotated with 75 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4631:8047 - closest 5' read 196283 ( +4212) 419:7863 ( -184) saved region 4631:8047 - closest 3' read 422866 ( -6) 4637:9296 ( +1249) search for confused edges: tig 468 read 422866 pos 4637-9296 IS confused by 5' edge to read 326888 - best edge read 196283 len 3226 erate 0.0446 score 3082.12 - alt edge len 1842 erate 0.0435 score 1761.87 - absdiff 1320.25 percdiff 54.5107 tig 468 read 422866 pos 4637-9296 IS confused by 5' edge to read 486073 - best edge read 196283 len 3226 erate 0.0446 score 3082.12 - alt edge len 2113 erate 0.0450 score 2017.91 - absdiff 1064.21 percdiff 41.7333 saved region 4631:8047 - 2 best edges are potentially confused break tig 468 into up to 3 pieces: 0 4131 unique (length 4131) 4131 8547 repeat (length 4416) 8547 17831 unique (length 9284) Creating Unitig 90749 Creating Unitig 90750 Creating Unitig 90751 For tig 468 unique region 0 4131 - 0/ 4 reads repeat/unique - unitig 90749 created. For tig 468 repeat region 4131 8547 - 27/ 0 reads repeat/unique - unitig 90750 created. For tig 468 unique region 8547 17831 - 0/ 32 reads repeat/unique - unitig 90751 created. Annotating repeats in reads for tig 469/90584. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 480:1134 - contained in read 83776 0- 5284 discard region 1711:4227 - contained in read 83776 0- 5284 thickest edges to the repeat regions: saved region 15732:22021 - closest 5' read 234484 ( +1322) 14410:20360 ( -1661) saved region 15732:22021 - closest 3' read 309264 ( -14) 15746:22136 ( +115) search for confused edges: discard region 15732:22021 - no confusion in best edges Annotating repeats in reads for tig 473/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8931:8283 - contained in read 19125 983- 10648 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 474/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3238:4355 - contained in read 91276 0- 5885 discard region 5161:5937 - contained in read 91275 40- 5937 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 475/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 0:3621 - contained in read 176496 0- 7441 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 477/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 5:6272 - contained in read 263693 0- 6926 discard region 8871:13540 - contained in read 100645 7138- 13542 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 483/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 485/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 7181:336 - contained in read 69011 0- 8000 discard region 7984:3574 - contained in read 69011 0- 8000 thickest edges to the repeat regions: saved region 11881:17668 - closest read 257140 ( +8) 11873:18066 ( +398) (contained) saved region 11881:17668 - closest 5' read 257140 ( +8) 11873:18066 ( +398) saved region 11881:17668 - closest 3' read 257140 ( +8) 11873:18066 ( +398) search for confused edges: discard region 11881:17668 - no confusion in best edges Annotating repeats in reads for tig 486/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 2502:5763 - contained in read 141681 1189- 7106 discard region 14981:18235 - contained in read 424592 8396- 22018 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 488/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 489/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 14925:15691 - contained in read 99261 12631- 17118 discard region 17007:17882 - contained in read 439498 12667- 19300 thickest edges to the repeat regions: saved region 7622:13768 - closest 5' read 243012 ( +510) 7112:13458 ( -310) saved region 7622:13768 - closest 3' read 99261 ( -5009) 12631:17118 ( +3350) search for confused edges: discard region 7622:13768 - no confusion in best edges Annotating repeats in reads for tig 490/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 491/90584. Annotated with 521 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:15748 - closest 5' read 141479 ( +0) 0:10858 ( -4890) saved region 0:15748 - closest 3' read 316706 ( -9585) 9585:15748 ( +0) search for confused edges: tig 491 read 141479 pos 0-10858 NOT confused by 3' edge to read 380314 - best edge read 292307 len 4012 erate 0.0290 score 3895.65 - alt edge len 768 erate 0.0447 score 733.67 - absdiff 3161.98 percdiff 136.6067 tig 491 read 292307 pos 6846-15710 IS confused by 5' edge to read 31898 - best edge read 141479 len 4014 erate 0.0290 score 3897.59 - alt edge len 2182 erate 0.0305 score 2115.45 - absdiff 1782.14 percdiff 59.2760 tig 491 read 292307 pos 6846-15710 IS confused by 3' edge to read 74513 - best edge read 316706 len 6125 erate 0.0188 score 6009.85 - alt edge len 6087 erate 0.0355 score 5870.91 - absdiff 138.94 percdiff 2.3389 tig 491 read 292307 pos 6846-15710 NOT confused by 3' edge to read 423876 - best edge read 316706 len 6125 erate 0.0188 score 6009.85 - alt edge len 3920 erate 0.0240 score 3825.92 - absdiff 2183.93 percdiff 44.4079 tig 491 read 292307 pos 6846-15710 IS confused by 5' edge to read 456649 - best edge read 141479 len 4014 erate 0.0290 score 3897.59 - alt edge len 2261 erate 0.0343 score 2183.45 - absdiff 1714.15 percdiff 56.3767 saved region 0:15748 - 3 best edges are potentially confused Annotating repeats in reads for tig 492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 493/90584. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 2943:4740 - contained in read 403391 1364- 6567 thickest edges to the repeat regions: saved region 4717:8791 - closest read 190794 ( +124) 4593:8805 ( +14) (contained) saved region 4717:8791 - closest read 190793 ( +14) 4703:9328 ( +537) (contained) saved region 4717:8791 - closest 5' read 190793 ( +14) 4703:9328 ( +537) saved region 4717:8791 - closest 3' read 190794 ( +124) 4593:8805 ( +14) search for confused edges: discard region 4717:8791 - no confusion in best edges Annotating repeats in reads for tig 494/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 496/90584. Annotated with 49 overlaps. Scan reads to discard spanned repeats. discard region 9:6635 - contained in read 455263 0- 9552 discard region 7849:13343 - contained in read 156940 4016- 13362 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 502/90584. Annotated with 331 overlaps. Scan reads to discard spanned repeats. discard region 10745:9964 - contained in read 523159 3762- 13181 thickest edges to the repeat regions: saved region 14481:18910 - closest 5' read 317864 ( +5) 14476:18558 ( -352) saved region 14481:18910 - closest 3' read 221205 ( -28) 14509:21816 ( +2906) search for confused edges: tig 502 read 6381 pos 9058-15210 IS confused by 5' edge to read 210830 - best edge read 221205 len 701 erate 0.0300 score 679.97 - alt edge len 694 erate 0.0392 score 666.80 - absdiff 13.17 percdiff 1.9565 tig 502 read 6381 pos 9058-15210 IS confused by 5' edge to read 241634 - best edge read 221205 len 701 erate 0.0300 score 679.97 - alt edge len 698 erate 0.0315 score 676.01 - absdiff 3.96 percdiff 0.5836 tig 502 read 6381 pos 9058-15210 IS confused by 5' edge to read 313640 - best edge read 221205 len 701 erate 0.0300 score 679.97 - alt edge len 693 erate 0.0246 score 675.95 - absdiff 4.02 percdiff 0.5926 tig 502 read 6381 pos 9058-15210 IS confused by 5' edge to read 360225 - best edge read 221205 len 701 erate 0.0300 score 679.97 - alt edge len 692 erate 0.0391 score 664.94 - absdiff 15.03 percdiff 2.2347 tig 502 read 6381 pos 9058-15210 IS confused by 5' edge to read 425448 - best edge read 221205 len 701 erate 0.0300 score 679.97 - alt edge len 694 erate 0.0418 score 664.99 - absdiff 14.98 percdiff 2.2275 saved region 14481:18910 - 5 best edges are potentially confused break tig 502 into up to 3 pieces: 0 13981 unique (length 13981) 13981 19410 repeat (length 5429) 19410 26794 unique (length 7384) Creating Unitig 90752 Creating Unitig 90753 Creating Unitig 90754 For tig 502 unique region 0 13981 - 0/ 17 reads repeat/unique - unitig 90752 created. For tig 502 repeat region 13981 19410 - 4/ 0 reads repeat/unique - unitig 90753 created. For tig 502 unique region 19410 26794 - 0/ 14 reads repeat/unique - unitig 90754 created. Annotating repeats in reads for tig 503/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12884:14355 - contained in read 197791 7526- 16269 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 505/90584. Annotated with 93 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:4976 - closest read 181764 ( +0) 0:4996 ( +20) (contained) saved region 0:4976 - closest 5' read 181764 ( +0) 0:4996 ( +20) saved region 0:4976 - closest 3' read 181764 ( +0) 0:4996 ( +20) search for confused edges: discard region 0:4976 - no confusion in best edges Annotating repeats in reads for tig 507/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8723:14832 - closest read 397386 ( +3065) 5658:15009 ( +177) (contained) saved region 8723:14832 - closest read 397385 ( +3055) 5668:15051 ( +219) (contained) saved region 8723:14832 - closest read 72200 ( +516) 8207:14966 ( +134) (contained) saved region 8723:14832 - closest read 72199 ( +488) 8235:15184 ( +352) (contained) saved region 8723:14832 - closest read 72201 ( +468) 8255:15038 ( +206) (contained) saved region 8723:14832 - closest read 72198 ( +381) 8342:14955 ( +123) (contained) saved region 8723:14832 - closest 5' read 72199 ( +488) 8235:15184 ( +352) saved region 8723:14832 - closest 3' read 397386 ( +3065) 5658:15009 ( +177) search for confused edges: discard region 8723:14832 - no confusion in best edges Annotating repeats in reads for tig 512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 513/90584. Annotated with 150 overlaps. Scan reads to discard spanned repeats. discard region 11266:13665 - contained in read 49095 10645- 16758 thickest edges to the repeat regions: saved region 3539:10214 - closest 5' read 213878 ( +3530) 9:6016 ( -4198) saved region 3539:10214 - closest 3' read 229570 ( -2281) 5820:13647 ( +3433) saved region 15145:20963 - closest 5' read 49096 ( +4488) 10657:16770 ( -4193) saved region 15145:20963 - closest 3' read 405182 ( -167) 15312:20966 ( +3) search for confused edges: tig 513 read 213878 pos 9-6016 IS confused by 5' edge to read 7280 - best edge read 520723 len 2471 erate 0.0256 score 2407.74 - alt edge len 969 erate 0.0272 score 942.64 - absdiff 1465.10 percdiff 87.4585 tig 513 read 213878 pos 9-6016 IS confused by 5' edge to read 495070 - best edge read 520723 len 2471 erate 0.0256 score 2407.74 - alt edge len 1516 erate 0.0266 score 1475.67 - absdiff 932.07 percdiff 48.0025 tig 513 read 213878 pos 9-6016 IS confused by 5' edge to read 495074 - best edge read 520723 len 2471 erate 0.0256 score 2407.74 - alt edge len 1517 erate 0.0272 score 1475.74 - absdiff 932.00 percdiff 47.9984 tig 513 read 229570 pos 5820-13647 NOT confused by 5' edge to read 46657 - best edge read 520723 len 4166 erate 0.0267 score 4054.77 - alt edge len 1267 erate 0.0245 score 1235.96 - absdiff 2818.81 percdiff 106.5566 tig 513 read 229570 pos 5820-13647 NOT confused by 5' edge to read 255551 - best edge read 520723 len 4166 erate 0.0267 score 4054.77 - alt edge len 1284 erate 0.0321 score 1242.78 - absdiff 2811.98 percdiff 106.1617 saved region 3539:10214 - 3 best edges are potentially confused discard region 15145:20963 - no confusion in best edges break tig 513 into up to 3 pieces: 0 3039 unique (length 3039) 3039 10714 repeat (length 7675) 10714 21832 unique (length 11118) Creating Unitig 90755 Creating Unitig 90756 Creating Unitig 90757 For tig 513 unique region 0 3039 - 0/ 4 reads repeat/unique - unitig 90755 created. For tig 513 repeat region 3039 10714 - 20/ 0 reads repeat/unique - unitig 90756 created. For tig 513 unique region 10714 21832 - 0/ 25 reads repeat/unique - unitig 90757 created. Annotating repeats in reads for tig 515/90584. Annotated with 119 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4699:8846 - closest 5' read 449475 ( +3860) 839:8619 ( -227) saved region 4699:8846 - closest 3' read 84065 ( -2995) 7694:14281 ( +5435) search for confused edges: tig 515 read 449475 pos 839-8619 IS confused by 3' edge to read 99428 - best edge read 188556 len 3842 erate 0.0240 score 3749.79 - alt edge len 3091 erate 0.0276 score 3005.69 - absdiff 744.10 percdiff 22.0296 tig 515 read 449475 pos 839-8619 IS confused by 3' edge to read 99430 - best edge read 188556 len 3842 erate 0.0240 score 3749.79 - alt edge len 2267 erate 0.0279 score 2203.75 - absdiff 1546.04 percdiff 51.9369 tig 515 read 449475 pos 839-8619 IS confused by 3' edge to read 378000 - best edge read 188556 len 3842 erate 0.0240 score 3749.79 - alt edge len 3829 erate 0.0167 score 3765.06 - absdiff 15.26 percdiff 0.4062 tig 515 read 449475 pos 839-8619 IS confused by 3' edge to read 481033 - best edge read 188556 len 3842 erate 0.0240 score 3749.79 - alt edge len 3724 erate 0.0178 score 3657.71 - absdiff 92.08 percdiff 2.4861 tig 515 read 188556 pos 4779-8786 IS confused by 5' edge to read 248444 - best edge read 449475 len 3840 erate 0.0240 score 3747.84 - alt edge len 3688 erate 0.0212 score 3609.81 - absdiff 138.03 percdiff 3.7519 tig 515 read 188556 pos 4779-8786 IS confused by 5' edge to read 248445 - best edge read 449475 len 3840 erate 0.0240 score 3747.84 - alt edge len 3684 erate 0.0254 score 3590.43 - absdiff 157.41 percdiff 4.2902 tig 515 read 84068 pos 7709-14104 IS confused by 5' edge to read 248444 - best edge read 188556 len 1077 erate 0.0197 score 1055.78 - alt edge len 756 erate 0.0312 score 732.41 - absdiff 323.37 percdiff 36.1672 saved region 4699:8846 - 7 best edges are potentially confused break tig 515 into up to 3 pieces: 0 4199 unique (length 4199) 4199 9346 repeat (length 5147) 9346 22701 unique (length 13355) Creating Unitig 90758 Creating Unitig 90759 Creating Unitig 90760 For tig 515 unique region 0 4199 - 0/ 2 reads repeat/unique - unitig 90758 created. For tig 515 repeat region 4199 9346 - 16/ 0 reads repeat/unique - unitig 90759 created. For tig 515 unique region 9346 22701 - 0/ 25 reads repeat/unique - unitig 90760 created. Annotating repeats in reads for tig 516/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 522/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4745:4152 - contained in read 81075 363- 5845 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 526/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 527/90584. Annotated with 1938 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:23407 - closest 5' read 423898 ( +0) 0:13916 ( -9491) saved region 0:23407 - closest 3' read 344891 (-17922) 17922:26645 ( +3238) search for confused edges: tig 527 read 203090 pos 6454-14896 NOT confused by 3' edge to read 62033 - best edge read 423898 len 7462 erate 0.0269 score 7261.27 - alt edge len 2338 erate 0.0278 score 2273.00 - absdiff 4988.27 percdiff 104.6386 tig 527 read 283742 pos 9403-16067 NOT confused by 5' edge to read 47583 - best edge read 137517 len 5298 erate 0.0340 score 5117.87 - alt edge len 2318 erate 0.0264 score 2256.80 - absdiff 2861.06 percdiff 77.5916 tig 527 read 283742 pos 9403-16067 NOT confused by 3' edge to read 62033 - best edge read 203090 len 5493 erate 0.0318 score 5318.32 - alt edge len 2721 erate 0.0309 score 2636.92 - absdiff 2681.40 percdiff 67.4122 tig 527 read 283742 pos 9403-16067 NOT confused by 5' edge to read 143524 - best edge read 137517 len 5298 erate 0.0340 score 5117.87 - alt edge len 2708 erate 0.0345 score 2614.57 - absdiff 2503.29 percdiff 64.7478 tig 527 read 283742 pos 9403-16067 NOT confused by 3' edge to read 408220 - best edge read 203090 len 5493 erate 0.0318 score 5318.32 - alt edge len 2233 erate 0.0305 score 2164.89 - absdiff 3153.43 percdiff 84.2800 tig 527 read 137517 pos 10820-17957 NOT confused by 5' edge to read 81464 - best edge read 283742 len 5247 erate 0.0340 score 5068.60 - alt edge len 784 erate 0.0370 score 754.99 - absdiff 4313.61 percdiff 148.1425 tig 527 read 137517 pos 10820-17957 IS confused by 3' edge to read 143524 - best edge read 398007 len 5112 erate 0.0407 score 4903.94 - alt edge len 4569 erate 0.0366 score 4401.77 - absdiff 502.17 percdiff 10.7927 tig 527 read 516035 pos 10896-17858 IS confused by 3' edge to read 47583 - best edge read 398007 len 5066 erate 0.0323 score 4902.37 - alt edge len 4117 erate 0.0373 score 3963.44 - absdiff 938.93 percdiff 21.1810 tig 527 read 516035 pos 10896-17858 NOT confused by 3' edge to read 81464 - best edge read 398007 len 5066 erate 0.0323 score 4902.37 - alt edge len 1824 erate 0.0334 score 1763.08 - absdiff 3139.29 percdiff 94.1959 tig 527 read 516035 pos 10896-17858 IS confused by 3' edge to read 143524 - best edge read 398007 len 5066 erate 0.0323 score 4902.37 - alt edge len 4516 erate 0.0376 score 4346.20 - absdiff 556.17 percdiff 12.0272 tig 527 read 398007 pos 12776-19154 IS confused by 5' edge to read 47583 - best edge read 223482 len 6049 erate 0.0318 score 5856.64 - alt edge len 5435 erate 0.0267 score 5289.89 - absdiff 566.76 percdiff 10.1692 tig 527 read 398007 pos 12776-19154 NOT confused by 5' edge to read 62033 - best edge read 223482 len 6049 erate 0.0318 score 5856.64 - alt edge len 2367 erate 0.0292 score 2297.88 - absdiff 3558.76 percdiff 87.2830 tig 527 read 398007 pos 12776-19154 IS confused by 5' edge to read 143524 - best edge read 223482 len 6049 erate 0.0318 score 5856.64 - alt edge len 5832 erate 0.0259 score 5680.95 - absdiff 175.69 percdiff 3.0455 tig 527 read 398007 pos 12776-19154 NOT confused by 5' edge to read 392719 - best edge read 223482 len 6049 erate 0.0318 score 5856.64 - alt edge len 1516 erate 0.0363 score 1460.97 - absdiff 4395.67 percdiff 120.1396 tig 527 read 398007 pos 12776-19154 NOT confused by 5' edge to read 408220 - best edge read 223482 len 6049 erate 0.0318 score 5856.64 - alt edge len 1875 erate 0.0283 score 1821.94 - absdiff 4034.70 percdiff 105.0899 saved region 0:23407 - 5 best edges are potentially confused break tig 527 into up to 2 pieces: 0 23907 repeat (length 23907) 23907 29945 unique (length 6038) Creating Unitig 90761 Creating Unitig 90762 For tig 527 repeat region 0 23907 - 188/ 0 reads repeat/unique - unitig 90761 created. For tig 527 unique region 23907 29945 - 0/ 9 reads repeat/unique - unitig 90762 created. Annotating repeats in reads for tig 530/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 532/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3321:14074 - closest 5' read 291725 ( +923) 2398:11454 ( -2620) saved region 3321:14074 - closest 3' read 177383 ( -4546) 7867:14074 ( +0) search for confused edges: tig 532 read 307455 pos 5845-12280 NOT confused by 3' edge to read 375790 - best edge read 291725 len 5629 erate 0.0182 score 5526.55 - alt edge len 1209 erate 0.0192 score 1185.79 - absdiff 4340.77 percdiff 129.3369 tig 532 read 307455 pos 5845-12280 NOT confused by 3' edge to read 375791 - best edge read 291725 len 5629 erate 0.0182 score 5526.55 - alt edge len 1207 erate 0.0294 score 1171.51 - absdiff 4355.04 percdiff 130.0387 tig 532 read 177384 pos 5966-14072 NOT confused by 3' edge to read 375790 - best edge read 307455 len 6240 erate 0.0197 score 6117.07 - alt edge len 1077 erate 0.0214 score 1053.95 - absdiff 5063.12 percdiff 141.2105 tig 532 read 177384 pos 5966-14072 NOT confused by 3' edge to read 375791 - best edge read 307455 len 6240 erate 0.0197 score 6117.07 - alt edge len 1075 erate 0.0317 score 1040.92 - absdiff 5076.15 percdiff 141.8316 discard region 3321:14074 - no confusion in best edges Annotating repeats in reads for tig 535/90584. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 3425:6482 - contained in read 275092 0- 8397 discard region 6687:9869 - contained in read 279156 3427- 14548 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 538/90584. Annotated with 50 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2356:10939 - closest 5' read 290087 ( +2353) 3:6196 ( -4743) saved region 2356:10939 - closest 3' read 510605 ( -2) 2358:10939 ( +0) search for confused edges: tig 538 read 290086 pos 469-6158 IS confused by 5' edge to read 303274 - best edge read 510605 len 3800 erate 0.0290 score 3689.80 - alt edge len 1687 erate 0.0221 score 1649.72 - absdiff 2040.08 percdiff 76.4145 tig 538 read 290086 pos 469-6158 IS confused by 5' edge to read 303275 - best edge read 510605 len 3800 erate 0.0290 score 3689.80 - alt edge len 2254 erate 0.0160 score 2217.94 - absdiff 1471.86 percdiff 49.8284 tig 538 read 290086 pos 469-6158 IS confused by 5' edge to read 375151 - best edge read 510605 len 3800 erate 0.0290 score 3689.80 - alt edge len 2085 erate 0.0169 score 2049.76 - absdiff 1640.04 percdiff 57.1485 tig 538 read 290086 pos 469-6158 NOT confused by 5' edge to read 421148 - best edge read 510605 len 3800 erate 0.0290 score 3689.80 - alt edge len 1524 erate 0.0178 score 1496.87 - absdiff 2192.93 percdiff 84.5601 tig 538 read 510605 pos 2358-10939 IS confused by 3' edge to read 169142 - best edge read 290086 len 3824 erate 0.0290 score 3713.10 - alt edge len 3756 erate 0.0185 score 3686.51 - absdiff 26.59 percdiff 0.7187 tig 538 read 510605 pos 2358-10939 IS confused by 3' edge to read 169144 - best edge read 290086 len 3824 erate 0.0290 score 3713.10 - alt edge len 3746 erate 0.0217 score 3664.71 - absdiff 48.39 percdiff 1.3118 tig 538 read 510605 pos 2358-10939 NOT confused by 3' edge to read 430222 - best edge read 290086 len 3824 erate 0.0290 score 3713.10 - alt edge len 1061 erate 0.0331 score 1025.88 - absdiff 2687.22 percdiff 113.4092 saved region 2356:10939 - 5 best edges are potentially confused break tig 538 into up to 2 pieces: 0 1856 unique (length 1856) 1856 10939 repeat (length 9083) Creating Unitig 90763 Creating Unitig 90764 For tig 538 unique region 0 1856 - 0/ 7 reads repeat/unique - unitig 90763 created. For tig 538 repeat region 1856 10939 - 12/ 0 reads repeat/unique - unitig 90764 created. Annotating repeats in reads for tig 542/90584. Annotated with 37 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8484:11160 - closest 5' read 486289 ( +5840) 2644:11145 ( -15) saved region 8484:11160 - closest 3' read 228188 ( -14) 8498:12961 ( +1801) search for confused edges: tig 542 read 486289 pos 2644-11145 IS confused by 3' edge to read 323429 - best edge read 228188 len 2647 erate 0.0363 score 2550.91 - alt edge len 655 erate 0.0244 score 639.02 - absdiff 1911.90 percdiff 119.8706 tig 542 read 486289 pos 2644-11145 IS confused by 3' edge to read 411922 - best edge read 228188 len 2647 erate 0.0363 score 2550.91 - alt edge len 1641 erate 0.0305 score 1590.95 - absdiff 959.96 percdiff 46.3542 tig 542 read 486289 pos 2644-11145 IS confused by 3' edge to read 483808 - best edge read 228188 len 2647 erate 0.0363 score 2550.91 - alt edge len 943 erate 0.0223 score 921.97 - absdiff 1628.94 percdiff 93.8092 tig 542 read 486289 pos 2644-11145 IS confused by 3' edge to read 497138 - best edge read 228188 len 2647 erate 0.0363 score 2550.91 - alt edge len 813 erate 0.0271 score 790.97 - absdiff 1759.95 percdiff 105.3267 saved region 8484:11160 - 4 best edges are potentially confused break tig 542 into up to 3 pieces: 0 7984 unique (length 7984) 7984 11660 repeat (length 3676) 11660 12985 unique (length 1325) Creating Unitig 90765 Creating Unitig 90766 Creating Unitig 90767 For tig 542 unique region 0 7984 - 0/ 25 reads repeat/unique - unitig 90765 created. For tig 542 repeat region 7984 11660 - 39/ 0 reads repeat/unique - unitig 90766 created. For tig 542 unique region 11660 12985 - 0/ 2 reads repeat/unique - unitig 90767 created. Annotating repeats in reads for tig 545/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 550/90584. Annotated with 658 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7201:25488 - closest 5' read 418704 ( +2045) 5156:14478 (-11010) saved region 7201:25488 - closest 3' read 291553 ( -6194) 13395:27705 ( +2217) search for confused edges: tig 550 read 527519 pos 3738-12819 IS confused by 3' edge to read 451255 - best edge read 128987 len 4507 erate 0.0372 score 4339.34 - alt edge len 4327 erate 0.0446 score 4134.02 - absdiff 205.32 percdiff 4.8463 tig 550 read 128987 pos 8312-16847 NOT confused by 5' edge to read 167326 - best edge read 393704 len 8391 erate 0.0197 score 8225.70 - alt edge len 584 erate 0.0309 score 565.95 - absdiff 7659.74 percdiff 174.2504 tig 550 read 128987 pos 8312-16847 NOT confused by 5' edge to read 167328 - best edge read 393704 len 8391 erate 0.0197 score 8225.70 - alt edge len 579 erate 0.0242 score 564.99 - absdiff 7660.71 percdiff 174.2915 tig 550 read 128987 pos 8312-16847 NOT confused by 5' edge to read 451255 - best edge read 393704 len 8391 erate 0.0197 score 8225.70 - alt edge len 5695 erate 0.0259 score 5547.50 - absdiff 2678.20 percdiff 38.8900 tig 550 read 393704 pos 8456-20503 NOT confused by 5' edge to read 1635 - best edge read 71581 len 11447 erate 0.0125 score 11303.91 - alt edge len 1449 erate 0.0319 score 1402.78 - absdiff 9901.14 percdiff 155.8413 tig 550 read 393704 pos 8456-20503 NOT confused by 3' edge to read 160678 - best edge read 128987 len 8347 erate 0.0197 score 8182.56 - alt edge len 2238 erate 0.0392 score 2150.27 - absdiff 6032.29 percdiff 116.7597 tig 550 read 393704 pos 8456-20503 NOT confused by 5' edge to read 167328 - best edge read 71581 len 11447 erate 0.0125 score 11303.91 - alt edge len 1610 erate 0.0410 score 1543.99 - absdiff 9759.92 percdiff 151.9302 tig 550 read 393704 pos 8456-20503 IS confused by 3' edge to read 361409 - best edge read 128987 len 8347 erate 0.0197 score 8182.56 - alt edge len 8034 erate 0.0302 score 7791.37 - absdiff 391.19 percdiff 4.8979 tig 550 read 393704 pos 8456-20503 IS confused by 3' edge to read 361410 - best edge read 128987 len 8347 erate 0.0197 score 8182.56 - alt edge len 7528 erate 0.0358 score 7258.50 - absdiff 924.07 percdiff 11.9690 tig 550 read 393704 pos 8456-20503 NOT confused by 5' edge to read 451255 - best edge read 71581 len 11447 erate 0.0125 score 11303.91 - alt edge len 4015 erate 0.0142 score 3957.99 - absdiff 7345.93 percdiff 96.2649 tig 550 read 393704 pos 8456-20503 IS confused by 3' edge to read 516113 - best edge read 128987 len 8347 erate 0.0197 score 8182.56 - alt edge len 6778 erate 0.0288 score 6582.79 - absdiff 1599.77 percdiff 21.6692 tig 550 read 71581 pos 9056-23027 NOT confused by 5' edge to read 1635 - best edge read 7516 len 12324 erate 0.0123 score 12172.41 - alt edge len 1307 erate 0.0331 score 1263.74 - absdiff 10908.68 percdiff 162.3780 tig 550 read 71581 pos 9056-23027 NOT confused by 5' edge to read 167328 - best edge read 7516 len 12324 erate 0.0123 score 12172.41 - alt edge len 1466 erate 0.0280 score 1424.95 - absdiff 10747.46 percdiff 158.0815 tig 550 read 71581 pos 9056-23027 NOT confused by 3' edge to read 361409 - best edge read 393704 len 11450 erate 0.0125 score 11306.88 - alt edge len 7437 erate 0.0298 score 7215.38 - absdiff 4091.50 percdiff 44.1793 tig 550 read 71581 pos 9056-23027 NOT confused by 3' edge to read 361410 - best edge read 393704 len 11450 erate 0.0125 score 11306.88 - alt edge len 6931 erate 0.0358 score 6682.87 - absdiff 4624.00 percdiff 51.4071 tig 550 read 71581 pos 9056-23027 IS confused by 5' edge to read 451255 - best edge read 7516 len 12324 erate 0.0123 score 12172.41 - alt edge len 11876 erate 0.0123 score 11729.93 - absdiff 442.49 percdiff 3.7025 tig 550 read 71581 pos 9056-23027 NOT confused by 3' edge to read 516113 - best edge read 393704 len 11450 erate 0.0125 score 11306.88 - alt edge len 6177 erate 0.0303 score 5989.84 - absdiff 5317.04 percdiff 61.4803 tig 550 read 7516 pos 10703-25328 NOT confused by 3' edge to read 167328 - best edge read 291553 len 11933 erate 0.0135 score 11771.90 - alt edge len 1068 erate 0.0360 score 1029.55 - absdiff 10742.35 percdiff 167.8302 tig 550 read 291553 pos 13395-27705 NOT confused by 3' edge to read 242718 - best edge read 7516 len 11916 erate 0.0135 score 11755.13 - alt edge len 655 erate 0.0382 score 629.98 - absdiff 11125.16 percdiff 179.6537 tig 550 read 291553 pos 13395-27705 NOT confused by 3' edge to read 242721 - best edge read 7516 len 11916 erate 0.0135 score 11755.13 - alt edge len 662 erate 0.0378 score 636.98 - absdiff 11118.16 percdiff 179.4393 tig 550 read 291553 pos 13395-27705 NOT confused by 3' edge to read 361409 - best edge read 7516 len 11916 erate 0.0135 score 11755.13 - alt edge len 5767 erate 0.0332 score 5575.54 - absdiff 6179.60 percdiff 71.3140 tig 550 read 291553 pos 13395-27705 NOT confused by 3' edge to read 361410 - best edge read 7516 len 11916 erate 0.0135 score 11755.13 - alt edge len 5259 erate 0.0384 score 5057.05 - absdiff 6698.08 percdiff 79.6812 tig 550 read 291553 pos 13395-27705 NOT confused by 3' edge to read 451255 - best edge read 7516 len 11916 erate 0.0135 score 11755.13 - alt edge len 9805 erate 0.0187 score 9621.65 - absdiff 2133.49 percdiff 19.9608 tig 550 read 291553 pos 13395-27705 NOT confused by 3' edge to read 474426 - best edge read 7516 len 11916 erate 0.0135 score 11755.13 - alt edge len 1281 erate 0.0273 score 1246.03 - absdiff 10509.11 percdiff 161.6641 tig 550 read 291553 pos 13395-27705 NOT confused by 3' edge to read 474427 - best edge read 7516 len 11916 erate 0.0135 score 11755.13 - alt edge len 1300 erate 0.0254 score 1266.98 - absdiff 10488.15 percdiff 161.0822 tig 550 read 291553 pos 13395-27705 NOT confused by 3' edge to read 516113 - best edge read 7516 len 11916 erate 0.0135 score 11755.13 - alt edge len 1834 erate 0.0290 score 1780.81 - absdiff 9974.32 percdiff 147.3753 saved region 7201:25488 - 5 best edges are potentially confused break tig 550 into up to 3 pieces: 0 6701 unique (length 6701) 6701 25988 repeat (length 19287) 25988 27705 unique (length 1717) Creating Unitig 90768 Creating Unitig 90769 Creating Unitig 90770 For tig 550 unique region 0 6701 - 0/ 27 reads repeat/unique - unitig 90768 created. For tig 550 repeat region 6701 25988 - 156/ 0 reads repeat/unique - unitig 90769 created. For tig 550 unique region 25988 27705 - 0/ 1 reads repeat/unique - unitig 90770 created. Annotating repeats in reads for tig 552/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 29:606 - contained in read 327832 0- 6046 discard region 3039:4478 - contained in read 327832 0- 6046 discard region 9617:10214 - contained in read 13627 5469- 11519 thickest edges to the repeat regions: saved region 5465:9488 - closest 5' read 327832 ( +5465) 0:6046 ( -3442) saved region 5465:9488 - closest 3' read 13627 ( -4) 5469:11519 ( +2031) search for confused edges: discard region 5465:9488 - no confusion in best edges Annotating repeats in reads for tig 553/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 556/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 557/90584. Annotated with 468 overlaps. Scan reads to discard spanned repeats. discard region 1814:7683 - contained in read 458812 59- 7683 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 560/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 0:3951 - contained in read 172094 0- 10110 discard region 15211:19387 - contained in read 346846 11628- 20105 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 563/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9853:11927 - contained in read 383325 4965- 12497 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 564/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3017:1999 - contained in read 501599 0- 6135 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 568/90584. Annotated with 960 overlaps. Scan reads to discard spanned repeats. discard region 8925:17489 - contained in read 375522 5197- 17489 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 570/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3166:6325 - contained in read 376637 18- 6325 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 573/90584. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 4:5498 - contained in read 507246 0- 6126 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 579/90584. Annotated with 925 overlaps. Scan reads to discard spanned repeats. discard region 10970:19461 - contained in read 519012 9726- 21237 thickest edges to the repeat regions: saved region 5121:10147 - closest read 56294 ( +4148) 973:10305 ( +158) (contained) saved region 5121:10147 - closest 5' read 56294 ( +4148) 973:10305 ( +158) saved region 5121:10147 - closest 3' read 56294 ( +4148) 973:10305 ( +158) search for confused edges: discard region 5121:10147 - no confusion in best edges Annotating repeats in reads for tig 581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 584/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 0:5873 - contained in read 62201 0- 8663 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 593/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5953:7199 - contained in read 425356 0- 7755 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 594/90584. Annotated with 304 overlaps. Scan reads to discard spanned repeats. discard region 6789:12180 - contained in read 196244 5961- 12180 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 600/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6726:7370 - contained in read 445869 22- 7370 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 601/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2366:6777 - contained in read 272337 0- 7331 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 607/90584. Annotated with 96 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7375:13568 - closest 5' read 376584 ( +2179) 5196:8163 ( -5405) saved region 7375:13568 - closest 3' read 101883 ( -13) 7388:13568 ( +0) search for confused edges: discard region 7375:13568 - no confusion in best edges Annotating repeats in reads for tig 608/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 12883:12045 - contained in read 59585 7808- 12937 thickest edges to the repeat regions: saved region 7808:10760 - closest read 188711 ( +3581) 4227:10776 ( +16) (contained) saved region 7808:10760 - closest read 188707 ( +3552) 4256:10786 ( +26) (contained) saved region 7808:10760 - closest read 188712 ( +3510) 4298:10782 ( +22) (contained) saved region 7808:10760 - closest read 188710 ( +3491) 4317:10781 ( +21) (contained) saved region 7808:10760 - closest read 59585 ( +0) 7808:12937 ( +2177) (contained) saved region 7808:10760 - closest 5' read 59585 ( +0) 7808:12937 ( +2177) saved region 7808:10760 - closest 3' read 188711 ( +3581) 4227:10776 ( +16) search for confused edges: discard region 7808:10760 - no confusion in best edges Annotating repeats in reads for tig 612/90584. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 22003:27809 - contained in read 494898 21077- 27884 thickest edges to the repeat regions: saved region 12850:17491 - closest 5' read 474773 ( +7067) 5783:15659 ( -1832) saved region 12850:17491 - closest 3' read 438170 ( -794) 13644:20685 ( +3194) search for confused edges: discard region 12850:17491 - no confusion in best edges Annotating repeats in reads for tig 613/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 8820:9337 - contained in read 86235 7335- 13070 discard region 11863:14317 - contained in read 445342 8755- 16251 discard region 17473:20534 - contained in read 499256 14204- 20534 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 620/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 11534:14954 - contained in read 274082 8073- 14974 thickest edges to the repeat regions: saved region 1660:8899 - closest read 530060 ( +527) 1133:8911 ( +12) (contained) saved region 1660:8899 - closest read 530058 ( +523) 1137:8916 ( +17) (contained) saved region 1660:8899 - closest read 530056 ( +373) 1287:8912 ( +13) (contained) saved region 1660:8899 - closest read 125715 ( +8) 1652:9061 ( +162) (contained) saved region 1660:8899 - closest 5' read 125715 ( +8) 1652:9061 ( +162) saved region 1660:8899 - closest 3' read 530060 ( +527) 1133:8911 ( +12) search for confused edges: discard region 1660:8899 - no confusion in best edges Annotating repeats in reads for tig 622/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 0:3932 - contained in read 501579 0- 6302 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 623/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8214:14833 - contained in read 16541 6787- 16299 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 625/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 626/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 627/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2203:3472 - contained in read 160809 0- 4984 discard region 5601:10170 - contained in read 286083 4468- 12464 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 628/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 2955:5343 - contained in read 413236 0- 11549 discard region 13371:17997 - contained in read 7364 12041- 19699 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 629/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 6820:9135 - contained in read 328998 2720- 9136 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 632/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 633/90584. Annotated with 68 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2572:9959 - closest 5' read 369442 ( +8) 2564:9541 ( -418) saved region 2572:9959 - closest 3' read 381926 ( -6791) 9363:16548 ( +6589) search for confused edges: tig 633 read 333465 pos 2094-9412 NOT confused by 3' edge to read 72751 - best edge read 369442 len 6810 erate 0.0112 score 6733.73 - alt edge len 737 erate 0.0244 score 719.02 - absdiff 6014.71 percdiff 161.4093 tig 633 read 333465 pos 2094-9412 NOT confused by 3' edge to read 349401 - best edge read 369442 len 6810 erate 0.0112 score 6733.73 - alt edge len 3720 erate 0.0315 score 3602.82 - absdiff 3130.91 percdiff 60.5794 tig 633 read 333465 pos 2094-9412 NOT confused by 3' edge to read 479143 - best edge read 369442 len 6810 erate 0.0112 score 6733.73 - alt edge len 4258 erate 0.0085 score 4221.81 - absdiff 2511.92 percdiff 45.8567 tig 633 read 333465 pos 2094-9412 NOT confused by 3' edge to read 485968 - best edge read 369442 len 6810 erate 0.0112 score 6733.73 - alt edge len 902 erate 0.0211 score 882.97 - absdiff 5850.76 percdiff 153.6299 tig 633 read 369442 pos 2564-9541 NOT confused by 3' edge to read 72751 - best edge read 369443 len 6967 erate 0.0164 score 6852.74 - alt edge len 880 erate 0.0126 score 868.91 - absdiff 5983.83 percdiff 154.9883 tig 633 read 369442 pos 2564-9541 NOT confused by 3' edge to read 349401 - best edge read 369443 len 6967 erate 0.0164 score 6852.74 - alt edge len 3868 erate 0.0289 score 3756.21 - absdiff 3096.53 percdiff 58.3757 tig 633 read 369442 pos 2564-9541 NOT confused by 3' edge to read 479143 - best edge read 369443 len 6967 erate 0.0164 score 6852.74 - alt edge len 4406 erate 0.0061 score 4379.12 - absdiff 2473.62 percdiff 44.0464 tig 633 read 369442 pos 2564-9541 NOT confused by 3' edge to read 485968 - best edge read 369443 len 6967 erate 0.0164 score 6852.74 - alt edge len 1045 erate 0.0115 score 1032.98 - absdiff 5819.76 percdiff 147.6024 tig 633 read 369443 pos 2582-9547 NOT confused by 5' edge to read 72751 - best edge read 123699 len 6052 erate 0.0103 score 5989.66 - alt edge len 876 erate 0.0276 score 851.82 - absdiff 5137.84 percdiff 150.1967 tig 633 read 369443 pos 2582-9547 NOT confused by 3' edge to read 325269 - best edge read 369442 len 6959 erate 0.0164 score 6844.87 - alt edge len 1336 erate 0.0408 score 1281.49 - absdiff 5563.38 percdiff 136.9218 tig 633 read 369443 pos 2582-9547 NOT confused by 5' edge to read 349401 - best edge read 123699 len 6052 erate 0.0103 score 5989.66 - alt edge len 3861 erate 0.0361 score 3721.62 - absdiff 2268.05 percdiff 46.7095 tig 633 read 369443 pos 2582-9547 NOT confused by 3' edge to read 468519 - best edge read 369442 len 6959 erate 0.0164 score 6844.87 - alt edge len 3909 erate 0.0273 score 3802.28 - absdiff 3042.59 percdiff 57.1531 tig 633 read 369443 pos 2582-9547 IS confused by 5' edge to read 479143 - best edge read 123699 len 6052 erate 0.0103 score 5989.66 - alt edge len 4398 erate 0.0116 score 4346.98 - absdiff 1642.68 percdiff 31.7836 tig 633 read 369443 pos 2582-9547 NOT confused by 5' edge to read 485968 - best edge read 123699 len 6052 erate 0.0103 score 5989.66 - alt edge len 1043 erate 0.0241 score 1017.86 - absdiff 4971.80 percdiff 141.8988 tig 633 read 123699 pos 3483-9677 NOT confused by 3' edge to read 72751 - best edge read 213301 len 6188 erate 0.0079 score 6139.11 - alt edge len 1007 erate 0.0109 score 996.02 - absdiff 5143.09 percdiff 144.1623 tig 633 read 123699 pos 3483-9677 NOT confused by 3' edge to read 349401 - best edge read 213301 len 6188 erate 0.0079 score 6139.11 - alt edge len 4000 erate 0.0291 score 3883.60 - absdiff 2255.51 percdiff 45.0081 tig 633 read 123699 pos 3483-9677 NOT confused by 3' edge to read 404097 - best edge read 213301 len 6188 erate 0.0079 score 6139.11 - alt edge len 1355 erate 0.0384 score 1302.97 - absdiff 4836.15 percdiff 129.9676 tig 633 read 123699 pos 3483-9677 NOT confused by 5' edge to read 468518 - best edge read 369443 len 6064 erate 0.0103 score 6001.54 - alt edge len 2957 erate 0.0204 score 2896.68 - absdiff 3104.86 percdiff 69.7862 tig 633 read 123699 pos 3483-9677 NOT confused by 5' edge to read 468519 - best edge read 369443 len 6064 erate 0.0103 score 6001.54 - alt edge len 3000 erate 0.0137 score 2958.90 - absdiff 3042.64 percdiff 67.9127 tig 633 read 123699 pos 3483-9677 IS confused by 3' edge to read 479143 - best edge read 213301 len 6188 erate 0.0079 score 6139.11 - alt edge len 4539 erate 0.0046 score 4518.12 - absdiff 1620.99 percdiff 30.4205 tig 633 read 123699 pos 3483-9677 NOT confused by 3' edge to read 485968 - best edge read 213301 len 6188 erate 0.0079 score 6139.11 - alt edge len 1174 erate 0.0085 score 1164.02 - absdiff 4975.09 percdiff 136.2454 tig 633 read 213301 pos 3500-9899 NOT confused by 5' edge to read 468518 - best edge read 123699 len 6177 erate 0.0079 score 6128.20 - alt edge len 2943 erate 0.0246 score 2870.60 - absdiff 3257.60 percdiff 72.4007 tig 633 read 213301 pos 3500-9899 NOT confused by 5' edge to read 468519 - best edge read 123699 len 6177 erate 0.0079 score 6128.20 - alt edge len 2986 erate 0.0181 score 2931.95 - absdiff 3196.25 percdiff 70.5561 saved region 2572:9959 - 2 best edges are potentially confused break tig 633 into up to 3 pieces: 0 2072 unique (length 2072) 2072 10459 repeat (length 8387) 10459 18084 unique (length 7625) Creating Unitig 90771 Creating Unitig 90772 Creating Unitig 90773 For tig 633 unique region 0 2072 - 0/ 8 reads repeat/unique - unitig 90771 created. For tig 633 repeat region 2072 10459 - 47/ 0 reads repeat/unique - unitig 90772 created. For tig 633 unique region 10459 18084 - 0/ 4 reads repeat/unique - unitig 90773 created. Annotating repeats in reads for tig 634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 635/90584. Annotated with 87 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10309:18597 - closest 5' read 82207 ( +4841) 5468:15303 ( -3294) saved region 10309:18597 - closest 3' read 323867 ( -125) 10434:19788 ( +1191) search for confused edges: discard region 10309:18597 - no confusion in best edges Annotating repeats in reads for tig 637/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 19916:22574 - contained in read 194430 16867- 22574 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 638/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 17486:19072 - contained in read 405906 2624- 20762 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 641/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 19207:15895 - contained in read 307361 7897- 20161 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 642/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 9474:8472 - contained in read 529721 2829- 9456 discard region 10387:12028 - contained in read 23212 4798- 17498 discard region 12705:18717 - contained in read 200374 9953- 20447 thickest edges to the repeat regions: saved region 0:2268 - closest read 29555 ( +0) 0:2756 ( +488) (contained) saved region 0:2268 - closest read 29554 ( +0) 0:2629 ( +361) (contained) saved region 0:2268 - closest read 29552 ( +0) 0:2540 ( +272) (contained) saved region 0:2268 - closest 5' read 29555 ( +0) 0:2756 ( +488) saved region 0:2268 - closest 3' read 29555 ( +0) 0:2756 ( +488) search for confused edges: discard region 0:2268 - no confusion in best edges Annotating repeats in reads for tig 643/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 6436:7512 - contained in read 131742 1721- 9112 thickest edges to the repeat regions: saved region 9584:12371 - closest read 336454 ( +196) 9388:12372 ( +1) (contained) saved region 9584:12371 - closest 5' read 336454 ( +196) 9388:12372 ( +1) saved region 9584:12371 - closest 3' read 336454 ( +196) 9388:12372 ( +1) search for confused edges: discard region 9584:12371 - no confusion in best edges Annotating repeats in reads for tig 644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 646/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 10506:12765 - contained in read 382924 6570- 13276 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 650/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5025:5533 - contained in read 24530 155- 7209 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 652/90584. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 137:2323 - contained in read 46544 0- 4794 thickest edges to the repeat regions: saved region 15195:15839 - closest read 150769 ( +1250) 13945:15845 ( +6) (contained) saved region 15195:15839 - closest read 329372 ( +2) 15193:20900 ( +5061) (contained) saved region 15195:15839 - closest 5' read 329372 ( +2) 15193:20900 ( +5061) saved region 15195:15839 - closest 3' read 150769 ( +1250) 13945:15845 ( +6) saved region 18704:20902 - closest read 329373 ( +3496) 15208:20905 ( +3) (contained) saved region 18704:20902 - closest 5' read 329373 ( +3496) 15208:20905 ( +3) saved region 18704:20902 - closest 3' read 329373 ( +3496) 15208:20905 ( +3) search for confused edges: tig 652 read 293741 pos 18706-23527 IS confused by 3' edge to read 396435 - best edge read 329373 len 2184 erate 0.0334 score 2111.05 - alt edge len 959 erate 0.0261 score 933.97 - absdiff 1177.08 percdiff 77.3120 discard region 15195:15839 - no confusion in best edges saved region 18704:20902 - 1 best edges are potentially confused break tig 652 into up to 3 pieces: 0 18204 unique (length 18204) 18204 21402 repeat (length 3198) 21402 23527 unique (length 2125) Creating Unitig 90774 Creating Unitig 90775 Creating Unitig 90776 For tig 652 unique region 0 18204 - 0/ 45 reads repeat/unique - unitig 90774 created. For tig 652 repeat region 18204 21402 - 2/ 0 reads repeat/unique - unitig 90776 created. For tig 652 unique region 21402 23527 - 0/ 2 reads repeat/unique - unitig 90775 created. Annotating repeats in reads for tig 653/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 3323:7948 - contained in read 393388 631- 7948 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 655/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2:4196 - contained in read 47415 0- 8274 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 656/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 14910:15411 - contained in read 50493 5295- 18009 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 658/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5019:9428 - closest 5' read 51602 ( +4995) 24:5524 ( -3904) saved region 5019:9428 - closest 3' read 342028 ( -21) 5040:15184 ( +5756) search for confused edges: tig 658 read 431164 pos 5023-9373 IS confused by 3' edge to read 332587 - best edge read 342028 len 4333 erate 0.0429 score 4147.11 - alt edge len 4307 erate 0.0277 score 4187.70 - absdiff 40.58 percdiff 0.9738 tig 658 read 431164 pos 5023-9373 IS confused by 3' edge to read 419902 - best edge read 342028 len 4333 erate 0.0429 score 4147.11 - alt edge len 3844 erate 0.0239 score 3752.13 - absdiff 394.99 percdiff 10.0006 tig 658 read 431164 pos 5023-9373 NOT confused by 3' edge to read 492245 - best edge read 342028 len 4333 erate 0.0429 score 4147.11 - alt edge len 1182 erate 0.0387 score 1136.26 - absdiff 3010.86 percdiff 113.9749 saved region 5019:9428 - 2 best edges are potentially confused break tig 658 into up to 3 pieces: 0 4519 unique (length 4519) 4519 9928 repeat (length 5409) 9928 28994 unique (length 19066) Creating Unitig 90777 Creating Unitig 90778 Creating Unitig 90779 For tig 658 unique region 0 4519 - 0/ 7 reads repeat/unique - unitig 90777 created. For tig 658 repeat region 4519 9928 - 32/ 0 reads repeat/unique - unitig 90778 created. For tig 658 unique region 9928 28994 - 0/ 10 reads repeat/unique - unitig 90779 created. Annotating repeats in reads for tig 659/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 101:868 - contained in read 439473 0- 3367 discard region 1601:3503 - contained in read 382644 78- 7668 discard region 4107:4829 - contained in read 382644 78- 7668 thickest edges to the repeat regions: saved region 5522:8265 - closest read 52877 ( +1) 5521:8526 ( +261) (contained) saved region 5522:8265 - closest 5' read 52877 ( +1) 5521:8526 ( +261) saved region 5522:8265 - closest 3' read 52877 ( +1) 5521:8526 ( +261) search for confused edges: discard region 5522:8265 - no confusion in best edges Annotating repeats in reads for tig 660/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 5275:5845 - contained in read 495021 0- 9620 discard region 12154:12703 - contained in read 53134 5519- 13424 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 662/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5769:9652 - closest 5' read 453016 ( +2247) 3522:9432 ( -220) saved region 5769:9652 - closest 3' read 458793 ( -22) 5791:9652 ( +0) search for confused edges: tig 662 read 453013 pos 3496-9415 IS confused by 5' edge to read 140653 - best edge read 458793 len 3624 erate 0.0241 score 3536.66 - alt edge len 3624 erate 0.0295 score 3517.09 - absdiff 19.57 percdiff 0.5549 tig 662 read 453013 pos 3496-9415 IS confused by 5' edge to read 305497 - best edge read 458793 len 3624 erate 0.0241 score 3536.66 - alt edge len 2657 erate 0.0282 score 2582.07 - absdiff 954.59 percdiff 31.2022 tig 662 read 453013 pos 3496-9415 IS confused by 5' edge to read 380044 - best edge read 458793 len 3624 erate 0.0241 score 3536.66 - alt edge len 3175 erate 0.0280 score 3086.10 - absdiff 450.56 percdiff 13.6065 tig 662 read 453013 pos 3496-9415 IS confused by 5' edge to read 505288 - best edge read 458793 len 3624 erate 0.0241 score 3536.66 - alt edge len 2872 erate 0.0268 score 2795.03 - absdiff 741.63 percdiff 23.4260 tig 662 read 458793 pos 5791-9652 IS confused by 5' edge to read 33699 - best edge read 453013 len 3619 erate 0.0241 score 3531.78 - alt edge len 1704 erate 0.0394 score 1636.86 - absdiff 1894.92 percdiff 73.3237 saved region 5769:9652 - 5 best edges are potentially confused break tig 662 into up to 2 pieces: 0 5269 unique (length 5269) 5269 9652 repeat (length 4383) Creating Unitig 90780 Creating Unitig 90781 For tig 662 unique region 0 5269 - 0/ 12 reads repeat/unique - unitig 90780 created. For tig 662 repeat region 5269 9652 - 22/ 0 reads repeat/unique - unitig 90781 created. Annotating repeats in reads for tig 663/90584. Annotated with 105 overlaps. Scan reads to discard spanned repeats. discard region 0:3147 - contained in read 193774 0- 4459 thickest edges to the repeat regions: saved region 3099:4473 - closest 5' read 193774 ( +3099) 0:4459 ( -14) saved region 3099:4473 - closest 3' read 330105 ( -1) 3100:4504 ( +31) search for confused edges: tig 663 read 56200 pos 3474-11439 IS confused by 5' edge to read 347747 - best edge read 193774 len 985 erate 0.0381 score 947.47 - alt edge len 744 erate 0.0377 score 715.95 - absdiff 231.52 percdiff 27.8366 saved region 3099:4473 - 1 best edges are potentially confused break tig 663 into up to 3 pieces: 0 2599 unique (length 2599) 2599 4973 repeat (length 2374) 4973 11559 unique (length 6586) Creating Unitig 90782 Creating Unitig 90783 Creating Unitig 90784 For tig 663 unique region 0 2599 - 0/ 2 reads repeat/unique - unitig 90782 created. For tig 663 repeat region 2599 4973 - 2/ 0 reads repeat/unique - unitig 90783 created. For tig 663 unique region 4973 11559 - 0/ 2 reads repeat/unique - unitig 90784 created. Annotating repeats in reads for tig 664/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5508:12365 - closest 5' read 163787 ( +281) 5227:11309 ( -1056) saved region 5508:12365 - closest 3' read 279786 ( -1556) 7064:12373 ( +8) search for confused edges: tig 664 read 506680 pos 6006-11466 IS confused by 5' edge to read 88247 - best edge read 163787 len 5295 erate 0.0342 score 5113.91 - alt edge len 3837 erate 0.0118 score 3791.72 - absdiff 1322.19 percdiff 29.6933 tig 664 read 506680 pos 6006-11466 IS confused by 5' edge to read 88250 - best edge read 163787 len 5295 erate 0.0342 score 5113.91 - alt edge len 3838 erate 0.0110 score 3795.78 - absdiff 1318.13 percdiff 29.5887 saved region 5508:12365 - 2 best edges are potentially confused break tig 664 into up to 3 pieces: 0 5008 unique (length 5008) 5008 12865 repeat (length 7857) 12865 17325 unique (length 4460) Creating Unitig 90785 Creating Unitig 90786 Creating Unitig 90787 For tig 664 unique region 0 5008 - 0/ 16 reads repeat/unique - unitig 90785 created. For tig 664 repeat region 5008 12865 - 44/ 0 reads repeat/unique - unitig 90786 created. For tig 664 unique region 12865 17325 - 0/ 3 reads repeat/unique - unitig 90787 created. Annotating repeats in reads for tig 665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 667/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 6084:7125 - contained in read 499619 4896- 12125 thickest edges to the repeat regions: saved region 18184:20288 - closest read 147011 ( +33) 18151:20288 ( +0) (contained) saved region 18184:20288 - closest 5' read 147011 ( +33) 18151:20288 ( +0) saved region 18184:20288 - closest 3' read 147011 ( +33) 18151:20288 ( +0) search for confused edges: discard region 18184:20288 - no confusion in best edges Annotating repeats in reads for tig 668/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7673:8223 - contained in read 107260 0- 10994 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 674/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 4628:6321 - contained in read 23854 3600- 8982 discard region 7440:6360 - contained in read 23854 3600- 8982 thickest edges to the repeat regions: saved region 8246:17810 - closest 5' read 23853 ( +3666) 4580:8998 ( -8812) saved region 8246:17810 - closest 3' read 259315 ( -6986) 15232:17810 ( +0) search for confused edges: tig 674 read 29724 pos 9580-16664 IS confused by 5' edge to read 119224 - best edge read 119225 len 6691 erate 0.0105 score 6620.74 - alt edge len 6690 erate 0.0112 score 6615.07 - absdiff 5.67 percdiff 0.0857 tig 674 read 29724 pos 9580-16664 IS confused by 5' edge to read 119226 - best edge read 119225 len 6691 erate 0.0105 score 6620.74 - alt edge len 6643 erate 0.0151 score 6542.69 - absdiff 78.05 percdiff 1.1859 tig 674 read 29724 pos 9580-16664 IS confused by 5' edge to read 119227 - best edge read 119225 len 6691 erate 0.0105 score 6620.74 - alt edge len 6681 erate 0.0104 score 6611.52 - absdiff 9.23 percdiff 0.1395 tig 674 read 141126 pos 10731-16689 IS confused by 3' edge to read 119224 - best edge read 29724 len 5928 erate 0.0142 score 5843.82 - alt edge len 5536 erate 0.0118 score 5470.68 - absdiff 373.15 percdiff 6.5959 tig 674 read 141126 pos 10731-16689 IS confused by 3' edge to read 119226 - best edge read 29724 len 5928 erate 0.0142 score 5843.82 - alt edge len 5488 erate 0.0186 score 5385.92 - absdiff 457.90 percdiff 8.1551 tig 674 read 141126 pos 10731-16689 IS confused by 3' edge to read 119227 - best edge read 29724 len 5928 erate 0.0142 score 5843.82 - alt edge len 5527 erate 0.0129 score 5455.70 - absdiff 388.12 percdiff 6.8697 tig 674 read 141124 pos 10733-16677 IS confused by 3' edge to read 119224 - best edge read 141126 len 5941 erate 0.0166 score 5842.38 - alt edge len 5529 erate 0.0154 score 5443.85 - absdiff 398.53 percdiff 7.0622 tig 674 read 141124 pos 10733-16677 IS confused by 3' edge to read 119226 - best edge read 141126 len 5941 erate 0.0166 score 5842.38 - alt edge len 5482 erate 0.0220 score 5361.40 - absdiff 480.98 percdiff 8.5861 tig 674 read 141124 pos 10733-16677 IS confused by 3' edge to read 119227 - best edge read 141126 len 5941 erate 0.0166 score 5842.38 - alt edge len 5520 erate 0.0147 score 5438.86 - absdiff 403.52 percdiff 7.1539 tig 674 read 259315 pos 15232-17810 IS confused by 5' edge to read 119224 - best edge read 141124 len 1458 erate 0.0312 score 1412.51 - alt edge len 1033 erate 0.0323 score 999.63 - absdiff 412.88 percdiff 34.2331 tig 674 read 259315 pos 15232-17810 IS confused by 5' edge to read 119227 - best edge read 141124 len 1458 erate 0.0312 score 1412.51 - alt edge len 1024 erate 0.0316 score 991.64 - absdiff 420.87 percdiff 35.0118 saved region 8246:17810 - 11 best edges are potentially confused break tig 674 into up to 2 pieces: 0 7746 unique (length 7746) 7746 17810 repeat (length 10064) Creating Unitig 90788 Creating Unitig 90789 For tig 674 unique region 0 7746 - 0/ 21 reads repeat/unique - unitig 90788 created. For tig 674 repeat region 7746 17810 - 10/ 0 reads repeat/unique - unitig 90789 created. Annotating repeats in reads for tig 675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 677/90584. Annotated with 669 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:15655 - closest 5' read 451255 ( +0) 0:14682 ( -973) saved region 0:15655 - closest 3' read 1638 (-13201) 13201:21226 ( +5571) search for confused edges: tig 677 read 1635 pos 13236-21224 IS confused by 3' edge to read 71581 - best edge read 451255 len 1446 erate 0.0284 score 1404.93 - alt edge len 1300 erate 0.0331 score 1256.97 - absdiff 147.96 percdiff 11.1171 tig 677 read 1635 pos 13236-21224 IS confused by 3' edge to read 393704 - best edge read 451255 len 1446 erate 0.0284 score 1404.93 - alt edge len 1441 erate 0.0319 score 1395.03 - absdiff 9.90 percdiff 0.7073 tig 677 read 1635 pos 13236-21224 IS confused by 3' edge to read 516113 - best edge read 451255 len 1446 erate 0.0284 score 1404.93 - alt edge len 1505 erate 0.0439 score 1438.93 - absdiff 34.00 percdiff 2.3909 saved region 0:15655 - 3 best edges are potentially confused break tig 677 into up to 2 pieces: 0 16155 repeat (length 16155) 16155 24478 unique (length 8323) Creating Unitig 90790 Creating Unitig 90791 For tig 677 repeat region 0 16155 - 16/ 0 reads repeat/unique - unitig 90790 created. For tig 677 unique region 16155 24478 - 0/ 12 reads repeat/unique - unitig 90791 created. Annotating repeats in reads for tig 678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 680/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2340:3720 - contained in read 398626 143- 6331 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 681/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 5276:6959 - contained in read 263930 4141- 9154 discard region 13443:14484 - contained in read 92447 7830- 14484 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 682/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6899 - closest read 450277 ( +0) 0:7320 ( +421) (contained) saved region 0:6899 - closest 5' read 450277 ( +0) 0:7320 ( +421) saved region 0:6899 - closest 3' read 450277 ( +0) 0:7320 ( +421) search for confused edges: discard region 0:6899 - no confusion in best edges Annotating repeats in reads for tig 684/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 0:1774 - contained in read 252714 0- 6581 discard region 8151:10691 - contained in read 289829 4153- 11643 discard region 10997:12252 - contained in read 94399 5487- 13065 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 685/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4400:3696 - contained in read 95042 0- 4830 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 687/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 690/90584. Annotated with 235 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5660 - closest read 80754 ( +0) 0:5750 ( +90) (contained) saved region 0:5660 - closest 5' read 80754 ( +0) 0:5750 ( +90) saved region 0:5660 - closest 3' read 80754 ( +0) 0:5750 ( +90) search for confused edges: discard region 0:5660 - no confusion in best edges Annotating repeats in reads for tig 691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 693/90584. Annotated with 112 overlaps. Scan reads to discard spanned repeats. discard region 12237:15699 - contained in read 467012 6220- 18565 thickest edges to the repeat regions: saved region 6199:11587 - closest 5' read 503648 ( +4) 6195:10473 ( -1114) saved region 6199:11587 - closest 3' read 467012 ( -21) 6220:18565 ( +6978) search for confused edges: tig 693 read 461648 pos 1377-9640 NOT confused by 3' edge to read 109817 - best edge read 467012 len 3386 erate 0.0307 score 3282.05 - alt edge len 1111 erate 0.0405 score 1066.00 - absdiff 2216.05 percdiff 101.9327 tig 693 read 461648 pos 1377-9640 NOT confused by 3' edge to read 113220 - best edge read 467012 len 3386 erate 0.0307 score 3282.05 - alt edge len 692 erate 0.0434 score 661.97 - absdiff 2620.08 percdiff 132.8637 tig 693 read 461648 pos 1377-9640 IS confused by 3' edge to read 466273 - best edge read 467012 len 3386 erate 0.0307 score 3282.05 - alt edge len 3348 erate 0.0329 score 3237.85 - absdiff 44.20 percdiff 1.3558 tig 693 read 461648 pos 1377-9640 IS confused by 3' edge to read 466274 - best edge read 467012 len 3386 erate 0.0307 score 3282.05 - alt edge len 3382 erate 0.0355 score 3261.94 - absdiff 20.11 percdiff 0.6146 tig 693 read 467012 pos 6220-18565 NOT confused by 5' edge to read 103487 - best edge read 461648 len 3420 erate 0.0307 score 3315.01 - alt edge len 931 erate 0.0280 score 904.93 - absdiff 2410.07 percdiff 114.2232 saved region 6199:11587 - 2 best edges are potentially confused break tig 693 into up to 3 pieces: 0 5699 unique (length 5699) 5699 12087 repeat (length 6388) 12087 18721 unique (length 6634) Creating Unitig 90792 Creating Unitig 90793 Creating Unitig 90794 For tig 693 unique region 0 5699 - 0/ 20 reads repeat/unique - unitig 90792 created. For tig 693 repeat region 5699 12087 - 42/ 0 reads repeat/unique - unitig 90793 created. For tig 693 unique region 12087 18721 - 0/ 18 reads repeat/unique - unitig 90794 created. Annotating repeats in reads for tig 697/90584. Annotated with 308 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2514:16073 - closest 5' read 508915 ( +2294) 220:9514 ( -6559) saved region 2514:16073 - closest 3' read 173945 ( -9156) 11670:18166 ( +2093) search for confused edges: tig 697 read 220610 pos 11698-18412 IS confused by 5' edge to read 266669 - best edge read 520468 len 4076 erate 0.0327 score 3942.71 - alt edge len 1904 erate 0.0274 score 1851.83 - absdiff 2090.88 percdiff 72.1673 tig 697 read 220610 pos 11698-18412 IS confused by 5' edge to read 468533 - best edge read 520468 len 4076 erate 0.0327 score 3942.71 - alt edge len 1984 erate 0.0400 score 1904.64 - absdiff 2038.07 percdiff 69.7093 tig 697 read 220610 pos 11698-18412 IS confused by 5' edge to read 468536 - best edge read 520468 len 4076 erate 0.0327 score 3942.71 - alt edge len 1970 erate 0.0407 score 1889.82 - absdiff 2052.89 percdiff 70.3946 saved region 2514:16073 - 3 best edges are potentially confused break tig 697 into up to 3 pieces: 0 2014 unique (length 2014) 2014 16573 repeat (length 14559) 16573 21468 unique (length 4895) Creating Unitig 90795 Creating Unitig 90796 Creating Unitig 90797 For tig 697 unique region 0 2014 - 0/ 2 reads repeat/unique - unitig 90795 created. For tig 697 repeat region 2014 16573 - 59/ 0 reads repeat/unique - unitig 90796 created. For tig 697 unique region 16573 21468 - 0/ 15 reads repeat/unique - unitig 90797 created. Annotating repeats in reads for tig 698/90584. Annotated with 58 overlaps. Scan reads to discard spanned repeats. discard region 3350:4770 - contained in read 206936 301- 8171 discard region 5003:6430 - contained in read 206936 301- 8171 discard region 13921:15430 - contained in read 471662 12944- 18379 thickest edges to the repeat regions: saved region 537:3089 - closest read 206936 ( +236) 301:8171 ( +5082) (contained) saved region 537:3089 - closest read 206934 ( +231) 306:8165 ( +5076) (contained) saved region 537:3089 - closest 5' read 206936 ( +236) 301:8171 ( +5082) saved region 537:3089 - closest 3' read 206936 ( +236) 301:8171 ( +5082) saved region 6602:9812 - closest 5' read 468595 ( +3404) 3198:9737 ( -75) saved region 6602:9812 - closest 3' read 482715 ( -596) 7198:13567 ( +3755) saved region 17460:21598 - closest read 78995 ( +4476) 12984:21603 ( +5) (contained) saved region 17460:21598 - closest read 337309 ( +4472) 12988:21700 ( +102) (contained) saved region 17460:21598 - closest read 506771 ( +4472) 12988:21616 ( +18) (contained) saved region 17460:21598 - closest read 337310 ( +4470) 12990:21708 ( +110) (contained) saved region 17460:21598 - closest read 381878 ( +4465) 12995:21600 ( +2) (contained) saved region 17460:21598 - closest read 383929 ( +2667) 14793:21600 ( +2) (contained) saved region 17460:21598 - closest read 9965 ( +2631) 14829:21640 ( +42) (contained) saved region 17460:21598 - closest read 381997 ( +2309) 15151:21926 ( +328) (contained) saved region 17460:21598 - closest read 381994 ( +2303) 15157:21934 ( +336) (contained) saved region 17460:21598 - closest read 381995 ( +2299) 15161:21931 ( +333) (contained) saved region 17460:21598 - closest read 381998 ( +2296) 15164:21927 ( +329) (contained) saved region 17460:21598 - closest read 381999 ( +2295) 15165:21915 ( +317) (contained) saved region 17460:21598 - closest read 381996 ( +2294) 15166:21927 ( +329) (contained) saved region 17460:21598 - closest read 470388 ( +2192) 15268:21976 ( +378) (contained) saved region 17460:21598 - closest read 41629 ( +450) 17010:21625 ( +27) (contained) saved region 17460:21598 - closest 5' read 470388 ( +2192) 15268:21976 ( +378) saved region 17460:21598 - closest 3' read 78995 ( +4476) 12984:21603 ( +5) search for confused edges: tig 698 read 482715 pos 7198-13567 IS confused by 5' edge to read 117854 - best edge read 468595 len 2537 erate 0.0348 score 2448.71 - alt edge len 2552 erate 0.0240 score 2490.75 - absdiff 42.04 percdiff 1.7022 discard region 537:3089 - no confusion in best edges saved region 6602:9812 - 1 best edges are potentially confused discard region 17460:21598 - no confusion in best edges break tig 698 into up to 3 pieces: 0 6102 unique (length 6102) 6102 10312 repeat (length 4210) 10312 25494 unique (length 15182) Creating Unitig 90798 Creating Unitig 90799 Creating Unitig 90800 For tig 698 unique region 0 6102 - 0/ 10 reads repeat/unique - unitig 90798 created. For tig 698 repeat region 6102 10312 - 8/ 0 reads repeat/unique - unitig 90799 created. For tig 698 unique region 10312 25494 - 0/ 177 reads repeat/unique - unitig 90800 created. Annotating repeats in reads for tig 699/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 700/90584. Annotated with 64 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 16108:20381 - closest 5' read 5562 ( +579) 15529:20074 ( -307) saved region 16108:20381 - closest 3' read 259528 ( -13) 16121:21496 ( +1115) search for confused edges: tig 700 read 5563 pos 11963-20059 NOT confused by 5' edge to read 145254 - best edge read 259528 len 3938 erate 0.0084 score 3904.92 - alt edge len 1735 erate 0.0245 score 1692.49 - absdiff 2212.43 percdiff 79.0518 tig 700 read 5563 pos 11963-20059 IS confused by 5' edge to read 247019 - best edge read 259528 len 3938 erate 0.0084 score 3904.92 - alt edge len 1877 erate 0.0255 score 1829.14 - absdiff 2075.78 percdiff 72.4019 tig 700 read 5563 pos 11963-20059 IS confused by 5' edge to read 247022 - best edge read 259528 len 3938 erate 0.0084 score 3904.92 - alt edge len 1876 erate 0.0222 score 1834.35 - absdiff 2070.57 percdiff 72.1544 tig 700 read 5563 pos 11963-20059 IS confused by 5' edge to read 402078 - best edge read 259528 len 3938 erate 0.0084 score 3904.92 - alt edge len 3854 erate 0.0138 score 3800.81 - absdiff 104.11 percdiff 2.7020 tig 700 read 259528 pos 16121-21496 IS confused by 3' edge to read 61434 - best edge read 5563 len 3933 erate 0.0084 score 3899.96 - alt edge len 3201 erate 0.0222 score 3129.94 - absdiff 770.03 percdiff 21.9071 tig 700 read 259528 pos 16121-21496 NOT confused by 3' edge to read 152489 - best edge read 5563 len 3933 erate 0.0084 score 3899.96 - alt edge len 1779 erate 0.0180 score 1746.98 - absdiff 2152.98 percdiff 76.2531 tig 700 read 259528 pos 16121-21496 NOT confused by 3' edge to read 152491 - best edge read 5563 len 3933 erate 0.0084 score 3899.96 - alt edge len 1764 erate 0.0222 score 1724.84 - absdiff 2175.12 percdiff 77.3405 tig 700 read 259528 pos 16121-21496 NOT confused by 3' edge to read 297003 - best edge read 5563 len 3933 erate 0.0084 score 3899.96 - alt edge len 711 erate 0.0437 score 679.93 - absdiff 3220.03 percdiff 140.6161 tig 700 read 259528 pos 16121-21496 NOT confused by 3' edge to read 527542 - best edge read 5563 len 3933 erate 0.0084 score 3899.96 - alt edge len 717 erate 0.0293 score 695.99 - absdiff 3203.97 percdiff 139.4257 saved region 16108:20381 - 4 best edges are potentially confused break tig 700 into up to 3 pieces: 0 15608 unique (length 15608) 15608 20881 repeat (length 5273) 20881 22860 unique (length 1979) Creating Unitig 90801 Creating Unitig 90802 Creating Unitig 90803 For tig 700 unique region 0 15608 - 0/ 25 reads repeat/unique - unitig 90801 created. For tig 700 repeat region 15608 20881 - 20/ 0 reads repeat/unique - unitig 90802 created. For tig 700 unique region 20881 22860 - 0/ 20 reads repeat/unique - unitig 90803 created. Annotating repeats in reads for tig 701/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 3038:3855 - contained in read 244834 0- 11461 discard region 5917:7726 - contained in read 244834 0- 11461 discard region 9682:12317 - contained in read 102746 8709- 14482 thickest edges to the repeat regions: saved region 12284:14802 - closest 5' read 102745 ( +3473) 8811:14519 ( -283) saved region 12284:14802 - closest 3' read 129767 ( -565) 12849:17987 ( +3185) search for confused edges: discard region 12284:14802 - no confusion in best edges Annotating repeats in reads for tig 702/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 558:2444 - closest 5' read 91784 ( +239) 319:2032 ( -412) saved region 558:2444 - closest 3' read 125439 ( -414) 972:3029 ( +585) search for confused edges: discard region 558:2444 - no confusion in best edges Annotating repeats in reads for tig 703/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1699:7191 - contained in read 131067 100- 7192 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 707/90584. Annotated with 68 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6024 - closest read 74017 ( +0) 0:6126 ( +102) (contained) saved region 0:6024 - closest 5' read 74017 ( +0) 0:6126 ( +102) saved region 0:6024 - closest 3' read 74017 ( +0) 0:6126 ( +102) search for confused edges: discard region 0:6024 - no confusion in best edges Annotating repeats in reads for tig 710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 713/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12261:19066 - closest 5' read 107403 ( +1587) 10674:16073 ( -2993) saved region 12261:19066 - closest 3' read 89560 ( -5) 12266:19935 ( +869) search for confused edges: discard region 12261:19066 - no confusion in best edges Annotating repeats in reads for tig 714/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 0:4201 - contained in read 402078 0- 9111 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 720/90584. Annotated with 170 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 762:9079 - closest 5' read 528924 ( +762) 0:5576 ( -3503) saved region 762:9079 - closest 3' read 6825 ( -683) 1445:10032 ( +953) search for confused edges: tig 720 read 528924 pos 0-5576 NOT confused by 5' edge to read 271380 - best edge read 128605 len 4726 erate 0.0446 score 4515.22 - alt edge len 1796 erate 0.0390 score 1725.96 - absdiff 2789.26 percdiff 89.3826 tig 720 read 501380 pos 1089-9068 NOT confused by 3' edge to read 88565 - best edge read 128605 len 6374 erate 0.0231 score 6226.76 - alt edge len 551 erate 0.0436 score 526.98 - absdiff 5699.78 percdiff 168.7890 tig 720 read 501380 pos 1089-9068 NOT confused by 5' edge to read 271380 - best edge read 6825 len 7592 erate 0.0236 score 7412.83 - alt edge len 2032 erate 0.0356 score 1959.66 - absdiff 5453.17 percdiff 116.3654 tig 720 read 501380 pos 1089-9068 NOT confused by 5' edge to read 271381 - best edge read 6825 len 7592 erate 0.0236 score 7412.83 - alt edge len 1948 erate 0.0375 score 1874.95 - absdiff 5537.88 percdiff 119.2509 discard region 762:9079 - no confusion in best edges Annotating repeats in reads for tig 721/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 722/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 4319:6503 - contained in read 169142 42- 6503 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 723/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2817:11980 - closest read 309700 ( +46) 2771:12285 ( +305) (contained) saved region 2817:11980 - closest 5' read 309700 ( +46) 2771:12285 ( +305) saved region 2817:11980 - closest 3' read 309700 ( +46) 2771:12285 ( +305) search for confused edges: discard region 2817:11980 - no confusion in best edges Annotating repeats in reads for tig 724/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5551:13507 - closest 5' read 392398 ( +1901) 3650:10330 ( -3177) saved region 5551:13507 - closest 3' read 249508 ( -619) 6170:13532 ( +25) search for confused edges: tig 724 read 392398 pos 3650-10330 IS confused by 5' edge to read 337319 - best edge read 383232 len 4710 erate 0.0245 score 4594.61 - alt edge len 3574 erate 0.0241 score 3487.87 - absdiff 1106.74 percdiff 27.3861 tig 724 read 392398 pos 3650-10330 IS confused by 5' edge to read 337321 - best edge read 383232 len 4710 erate 0.0245 score 4594.61 - alt edge len 3583 erate 0.0232 score 3499.87 - absdiff 1094.73 percdiff 27.0488 tig 724 read 383232 pos 5620-12183 IS confused by 5' edge to read 337319 - best edge read 249508 len 6013 erate 0.0160 score 5916.79 - alt edge len 5417 erate 0.0131 score 5346.04 - absdiff 570.75 percdiff 10.1352 tig 724 read 383232 pos 5620-12183 IS confused by 5' edge to read 337321 - best edge read 249508 len 6013 erate 0.0160 score 5916.79 - alt edge len 5426 erate 0.0131 score 5354.92 - absdiff 561.87 percdiff 9.9696 tig 724 read 249508 pos 6170-13532 IS confused by 3' edge to read 182586 - best edge read 383232 len 6043 erate 0.0160 score 5946.31 - alt edge len 4129 erate 0.0287 score 4010.50 - absdiff 1935.81 percdiff 38.8842 tig 724 read 249508 pos 6170-13532 IS confused by 3' edge to read 182587 - best edge read 383232 len 6043 erate 0.0160 score 5946.31 - alt edge len 4260 erate 0.0355 score 4108.77 - absdiff 1837.54 percdiff 36.5495 saved region 5551:13507 - 6 best edges are potentially confused break tig 724 into up to 3 pieces: 0 5051 unique (length 5051) 5051 14007 repeat (length 8956) 14007 14885 unique (length 878) Creating Unitig 90804 Creating Unitig 90805 Creating Unitig 90806 For tig 724 unique region 0 5051 - 0/ 14 reads repeat/unique - unitig 90804 created. For tig 724 repeat region 5051 14007 - 10/ 0 reads repeat/unique - unitig 90805 created. For tig 724 unique region 14007 14885 - 0/ 1 reads repeat/unique - unitig 90806 created. Annotating repeats in reads for tig 725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 726/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 3784:4894 - contained in read 321427 0- 7842 thickest edges to the repeat regions: saved region 5266:10876 - closest 5' read 84679 ( +27) 5239:10629 ( -247) saved region 5266:10876 - closest 3' read 247023 ( -1078) 6344:12413 ( +1537) search for confused edges: discard region 5266:10876 - no confusion in best edges Annotating repeats in reads for tig 728/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 21861:26523 - closest read 295256 ( +3531) 18330:26530 ( +7) (contained) saved region 21861:26523 - closest read 295257 ( +3530) 18331:26525 ( +2) (contained) saved region 21861:26523 - closest read 371144 ( +3) 21858:26912 ( +389) (contained) saved region 21861:26523 - closest 5' read 371144 ( +3) 21858:26912 ( +389) saved region 21861:26523 - closest 3' read 295256 ( +3531) 18330:26530 ( +7) search for confused edges: discard region 21861:26523 - no confusion in best edges Annotating repeats in reads for tig 731/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 0:3134 - contained in read 187683 0- 8469 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 732/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:1053 - contained in read 430222 0- 5159 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 733/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 21:668 - contained in read 398971 0- 6095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 736/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:646 - contained in read 174124 0- 11323 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 738/90584. Annotated with 365 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9411:14390 - closest 5' read 176510 ( +1784) 7627:14080 ( -310) saved region 9411:14390 - closest 3' read 524681 ( -7) 9418:15010 ( +620) saved region 14467:25805 - closest 5' read 352048 ( +846) 13621:21014 ( -4791) saved region 14467:25805 - closest 3' read 521648 ( -3569) 18036:26545 ( +740) search for confused edges: tig 738 read 369503 pos 11932-18570 IS confused by 5' edge to read 87952 - best edge read 176512 len 2140 erate 0.0245 score 2087.57 - alt edge len 1142 erate 0.0381 score 1098.49 - absdiff 989.08 percdiff 62.0880 tig 738 read 369503 pos 11932-18570 IS confused by 5' edge to read 523972 - best edge read 176512 len 2140 erate 0.0245 score 2087.57 - alt edge len 1292 erate 0.0341 score 1247.94 - absdiff 839.63 percdiff 50.3447 saved region 9411:14390 - 2 best edges are potentially confused discard region 14467:25805 - no confusion in best edges break tig 738 into up to 3 pieces: 0 8911 unique (length 8911) 8911 14890 repeat (length 5979) 14890 27406 unique (length 12516) Creating Unitig 90807 Creating Unitig 90808 Creating Unitig 90809 For tig 738 unique region 0 8911 - 0/ 16 reads repeat/unique - unitig 90807 created. For tig 738 repeat region 8911 14890 - 4/ 0 reads repeat/unique - unitig 90809 created. For tig 738 unique region 14890 27406 - 0/ 60 reads repeat/unique - unitig 90808 created. Annotating repeats in reads for tig 739/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 740/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 9278:13058 - contained in read 329966 5382- 13145 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 741/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4250:2950 - contained in read 381128 0- 6753 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 742/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5413:6858 - contained in read 309492 0- 8445 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 744/90584. Annotated with 75 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4876:12339 - closest 5' read 447235 ( +4069) 807:8800 ( -3539) saved region 4876:12339 - closest 3' read 324459 ( -5244) 10120:16006 ( +3667) search for confused edges: tig 744 read 404233 pos 5903-11690 NOT confused by 5' edge to read 10549 - best edge read 404237 len 5769 erate 0.0156 score 5679.00 - alt edge len 679 erate 0.0314 score 657.68 - absdiff 5021.32 percdiff 158.4843 tig 744 read 404237 pos 5921-11748 IS confused by 5' edge to read 10549 - best edge read 235432 len 2780 erate 0.0217 score 2719.67 - alt edge len 690 erate 0.0320 score 667.92 - absdiff 2051.75 percdiff 121.1334 tig 744 read 324459 pos 10120-16006 IS confused by 5' edge to read 519783 - best edge read 235432 len 2054 erate 0.0280 score 1996.49 - alt edge len 590 erate 0.0222 score 576.90 - absdiff 1419.59 percdiff 110.3281 tig 744 read 324459 pos 10120-16006 IS confused by 5' edge to read 526381 - best edge read 235432 len 2054 erate 0.0280 score 1996.49 - alt edge len 584 erate 0.0274 score 568.00 - absdiff 1428.49 percdiff 111.4055 saved region 4876:12339 - 3 best edges are potentially confused break tig 744 into up to 3 pieces: 0 4376 unique (length 4376) 4376 12839 repeat (length 8463) 12839 23333 unique (length 10494) Creating Unitig 90810 Creating Unitig 90811 Creating Unitig 90812 For tig 744 unique region 0 4376 - 0/ 4 reads repeat/unique - unitig 90810 created. For tig 744 repeat region 4376 12839 - 20/ 0 reads repeat/unique - unitig 90811 created. For tig 744 unique region 12839 23333 - 0/ 10 reads repeat/unique - unitig 90812 created. Annotating repeats in reads for tig 746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 748/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4505:5716 - closest read 490543 ( +4505) 0:5856 ( +140) (contained) saved region 4505:5716 - closest read 490545 ( +4505) 0:5840 ( +124) (contained) saved region 4505:5716 - closest read 490547 ( +4478) 27:5832 ( +116) (contained) saved region 4505:5716 - closest read 490546 ( +4470) 35:5804 ( +88) (contained) saved region 4505:5716 - closest read 220435 ( +0) 4505:6665 ( +949) (contained) saved region 4505:5716 - closest 5' read 220435 ( +0) 4505:6665 ( +949) saved region 4505:5716 - closest 3' read 490543 ( +4505) 0:5856 ( +140) search for confused edges: discard region 4505:5716 - no confusion in best edges Annotating repeats in reads for tig 749/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 751/90584. Annotated with 151 overlaps. Scan reads to discard spanned repeats. discard region 0:2251 - contained in read 226924 0- 8554 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 752/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2997:4402 - contained in read 377037 0- 5802 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 755/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2333:4804 - closest read 147496 ( +146) 2187:6161 ( +1357) (contained) saved region 2333:4804 - closest read 147497 ( +70) 2263:5771 ( +967) (contained) saved region 2333:4804 - closest 5' read 147496 ( +146) 2187:6161 ( +1357) saved region 2333:4804 - closest 3' read 147496 ( +146) 2187:6161 ( +1357) search for confused edges: discard region 2333:4804 - no confusion in best edges Annotating repeats in reads for tig 756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 757/90584. Annotated with 68 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1551:12875 - closest 5' read 353295 ( +363) 1188:6722 ( -6153) saved region 1551:12875 - closest 3' read 158815 ( -387) 1938:13204 ( +329) saved region 12898:16613 - closest 5' read 249679 ( +2234) 10664:15188 ( -1425) saved region 12898:16613 - closest 3' read 525055 ( -10) 12908:20164 ( +3551) search for confused edges: tig 757 read 353295 pos 1188-6722 NOT confused by 5' edge to read 191308 - best edge read 172212 len 5045 erate 0.0278 score 4904.75 - alt edge len 2824 erate 0.0222 score 2761.31 - absdiff 2143.44 percdiff 55.9203 discard region 1551:12875 - no confusion in best edges discard region 12898:16613 - no confusion in best edges Annotating repeats in reads for tig 762/90584. Annotated with 145 overlaps. Scan reads to discard spanned repeats. discard region 9481:10256 - contained in read 88565 3396- 10269 thickest edges to the repeat regions: saved region 3888:8912 - closest read 88565 ( +492) 3396:10269 ( +1357) (contained) saved region 3888:8912 - closest 5' read 88565 ( +492) 3396:10269 ( +1357) saved region 3888:8912 - closest 3' read 88565 ( +492) 3396:10269 ( +1357) search for confused edges: discard region 3888:8912 - no confusion in best edges Annotating repeats in reads for tig 764/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 11505:13272 - contained in read 486843 8153- 14789 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 765/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 13569:14759 - contained in read 319427 11486- 17296 discard region 16796:17529 - contained in read 59849 12512- 20358 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 767/90584. Annotated with 271 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1848:7466 - closest 5' read 249693 ( +1748) 100:5915 ( -1551) saved region 1848:7466 - closest 3' read 378862 ( -295) 2143:9583 ( +2117) search for confused edges: tig 767 read 249690 pos 52-5909 IS confused by 3' edge to read 242718 - best edge read 378862 len 3766 erate 0.0252 score 3671.10 - alt edge len 1809 erate 0.0288 score 1756.90 - absdiff 1914.20 percdiff 70.5305 tig 767 read 249690 pos 52-5909 IS confused by 3' edge to read 242721 - best edge read 378862 len 3766 erate 0.0252 score 3671.10 - alt edge len 1816 erate 0.0325 score 1756.98 - absdiff 1914.12 percdiff 70.5265 tig 767 read 249690 pos 52-5909 NOT confused by 3' edge to read 442050 - best edge read 378862 len 3766 erate 0.0252 score 3671.10 - alt edge len 561 erate 0.0446 score 535.98 - absdiff 3135.12 percdiff 149.0402 saved region 1848:7466 - 2 best edges are potentially confused break tig 767 into up to 3 pieces: 0 1348 unique (length 1348) 1348 7966 repeat (length 6618) 7966 9583 unique (length 1617) Creating Unitig 90813 Creating Unitig 90814 Creating Unitig 90815 For tig 767 unique region 0 1348 - 0/ 6 reads repeat/unique - unitig 90813 created. For tig 767 repeat region 1348 7966 - 42/ 0 reads repeat/unique - unitig 90814 created. For tig 767 unique region 7966 9583 - 0/ 2 reads repeat/unique - unitig 90815 created. Annotating repeats in reads for tig 769/90584. Annotated with 116 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10409:13159 - closest 5' read 410509 ( +0) 10409:13097 ( -62) saved region 10409:13159 - closest 3' read 168472 ( -62) 10471:23813 (+10654) saved region 15181:24058 - closest 5' read 168472 ( +4710) 10471:23813 ( -245) saved region 15181:24058 - closest 3' read 86638 ( -336) 15517:24060 ( +2) saved region 25907:36734 - closest 5' read 424635 ( +4279) 21628:29088 ( -7646) saved region 25907:36734 - closest 3' read 198699 ( -2470) 28377:36734 ( +0) search for confused edges: tig 769 read 168472 pos 10471-23813 NOT confused by 5' edge to read 198699 - best edge read 86638 len 8296 erate 0.0081 score 8228.80 - alt edge len 5573 erate 0.0084 score 5526.19 - absdiff 2702.62 percdiff 39.2965 tig 769 read 86638 pos 15517-24060 IS confused by 5' edge to read 198699 - best edge read 168472 len 8295 erate 0.0081 score 8227.81 - alt edge len 8289 erate 0.0093 score 8211.91 - absdiff 15.90 percdiff 0.1934 discard region 10409:13159 - no confusion in best edges saved region 15181:24058 - 1 best edges are potentially confused discard region 25907:36734 - no confusion in best edges break tig 769 into up to 3 pieces: 0 14681 unique (length 14681) 14681 24558 repeat (length 9877) 24558 36734 unique (length 12176) Creating Unitig 90816 Creating Unitig 90817 Creating Unitig 90818 For tig 769 unique region 0 14681 - 0/ 17 reads repeat/unique - unitig 90816 created. For tig 769 repeat region 14681 24558 - 10/ 0 reads repeat/unique - unitig 90817 created. For tig 769 unique region 24558 36734 - 0/ 22 reads repeat/unique - unitig 90818 created. Annotating repeats in reads for tig 772/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6529:4838 - contained in read 258669 0- 6525 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 780/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 0:724 - contained in read 76686 0- 5851 discard region 1759:2371 - contained in read 76686 0- 5851 thickest edges to the repeat regions: saved region 4994:5893 - closest 5' read 76685 ( +4970) 24:5882 ( -11) saved region 4994:5893 - closest 3' read 273199 ( -231) 5225:11846 ( +5953) search for confused edges: discard region 4994:5893 - no confusion in best edges Annotating repeats in reads for tig 781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 782/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 783/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6075:7996 - contained in read 85083 0- 9181 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 787/90584. Annotated with 715 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8915 - closest 5' read 295224 ( +0) 0:7408 ( -1507) saved region 0:8915 - closest 3' read 36821 ( -2921) 2921:10007 ( +1092) search for confused edges: tig 787 read 295224 pos 0-7408 NOT confused by 3' edge to read 433344 - best edge read 368990 len 6395 erate 0.0330 score 6183.97 - alt edge len 2655 erate 0.0437 score 2538.98 - absdiff 3644.99 percdiff 83.5725 discard region 0:8915 - no confusion in best edges Annotating repeats in reads for tig 788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 792/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 4082:7505 - contained in read 12331 115- 7505 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 796/90584. Annotated with 694 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:15786 - closest 5' read 313746 ( +0) 0:7019 ( -8767) saved region 0:15786 - closest 3' read 395007 ( -4369) 4369:15786 ( +0) search for confused edges: discard region 0:15786 - no confusion in best edges Annotating repeats in reads for tig 798/90584. Annotated with 107 overlaps. Scan reads to discard spanned repeats. discard region 13631:17812 - contained in read 44032 10988- 18613 discard region 19041:21614 - contained in read 288571 13445- 23649 thickest edges to the repeat regions: saved region 1500:13472 - closest 5' read 317807 ( +1473) 27:6714 ( -6758) saved region 1500:13472 - closest 3' read 61839 ( -9294) 10794:16650 ( +3178) search for confused edges: tig 798 read 317806 pos 694-6704 IS confused by 3' edge to read 44032 - best edge read 423318 len 2963 erate 0.0373 score 2852.48 - alt edge len 2489 erate 0.0370 score 2396.91 - absdiff 455.57 percdiff 17.3572 tig 798 read 317806 pos 694-6704 IS confused by 3' edge to read 61839 - best edge read 423318 len 2963 erate 0.0373 score 2852.48 - alt edge len 1061 erate 0.0302 score 1028.96 - absdiff 1823.52 percdiff 93.9612 tig 798 read 317806 pos 694-6704 IS confused by 3' edge to read 190564 - best edge read 423318 len 2963 erate 0.0373 score 2852.48 - alt edge len 1061 erate 0.0311 score 1028.00 - absdiff 1824.48 percdiff 94.0335 tig 798 read 317806 pos 694-6704 IS confused by 3' edge to read 220414 - best edge read 423318 len 2963 erate 0.0373 score 2852.48 - alt edge len 841 erate 0.0226 score 821.99 - absdiff 2030.49 percdiff 110.5185 tig 798 read 317806 pos 694-6704 IS confused by 3' edge to read 423319 - best edge read 423318 len 2963 erate 0.0373 score 2852.48 - alt edge len 1172 erate 0.0231 score 1144.93 - absdiff 1707.55 percdiff 85.4330 tig 798 read 423318 pos 3741-11532 IS confused by 3' edge to read 248892 - best edge read 317806 len 2951 erate 0.0373 score 2840.93 - alt edge len 1133 erate 0.0415 score 1085.98 - absdiff 1754.95 percdiff 89.3806 tig 798 read 423318 pos 3741-11532 NOT confused by 5' edge to read 423319 - best edge read 190564 len 3326 erate 0.0298 score 3226.89 - alt edge len 535 erate 0.0243 score 522.00 - absdiff 2704.89 percdiff 144.3035 tig 798 read 190564 pos 8206-13200 NOT confused by 5' edge to read 317804 - best edge read 423318 len 3338 erate 0.0298 score 3238.53 - alt edge len 1051 erate 0.0344 score 1014.85 - absdiff 2223.68 percdiff 104.5609 tig 798 read 190564 pos 8206-13200 NOT confused by 5' edge to read 317806 - best edge read 423318 len 3338 erate 0.0298 score 3238.53 - alt edge len 1069 erate 0.0311 score 1035.75 - absdiff 2202.77 percdiff 103.0710 tig 798 read 190564 pos 8206-13200 NOT confused by 5' edge to read 415908 - best edge read 423318 len 3338 erate 0.0298 score 3238.53 - alt edge len 704 erate 0.0357 score 678.87 - absdiff 2559.66 percdiff 130.6818 tig 798 read 190564 pos 8206-13200 IS confused by 5' edge to read 423319 - best edge read 423318 len 3338 erate 0.0298 score 3238.53 - alt edge len 2487 erate 0.0331 score 2404.68 - absdiff 833.85 percdiff 29.5522 saved region 1500:13472 - 7 best edges are potentially confused break tig 798 into up to 3 pieces: 0 1000 unique (length 1000) 1000 13972 repeat (length 12972) 13972 23680 unique (length 9708) Creating Unitig 90819 Creating Unitig 90820 Creating Unitig 90821 For tig 798 unique region 0 1000 - 0/ 6 reads repeat/unique - unitig 90819 created. For tig 798 repeat region 1000 13972 - 10/ 0 reads repeat/unique - unitig 90820 created. For tig 798 unique region 13972 23680 - 0/ 60 reads repeat/unique - unitig 90821 created. Annotating repeats in reads for tig 801/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9232:15769 - closest 5' read 403225 ( +5260) 3972:15173 ( -596) saved region 9232:15769 - closest 3' read 266183 ( -871) 10103:18715 ( +2946) search for confused edges: tig 801 read 403225 pos 3972-15173 IS confused by 5' edge to read 86888 - best edge read 266183 len 5064 erate 0.0077 score 5025.01 - alt edge len 3041 erate 0.0151 score 2995.08 - absdiff 2029.93 percdiff 50.6210 tig 801 read 266183 pos 10103-18715 NOT confused by 5' edge to read 157122 - best edge read 403225 len 5070 erate 0.0077 score 5030.96 - alt edge len 2512 erate 0.0108 score 2484.87 - absdiff 2546.09 percdiff 67.7527 tig 801 read 266183 pos 10103-18715 NOT confused by 5' edge to read 195721 - best edge read 403225 len 5070 erate 0.0077 score 5030.96 - alt edge len 1544 erate 0.0130 score 1523.93 - absdiff 3507.03 percdiff 107.0051 tig 801 read 266183 pos 10103-18715 NOT confused by 5' edge to read 269982 - best edge read 403225 len 5070 erate 0.0077 score 5030.96 - alt edge len 1554 erate 0.0187 score 1524.94 - absdiff 3506.02 percdiff 106.9577 tig 801 read 266183 pos 10103-18715 NOT confused by 5' edge to read 353467 - best edge read 403225 len 5070 erate 0.0077 score 5030.96 - alt edge len 2472 erate 0.0147 score 2435.66 - absdiff 2595.30 percdiff 69.5174 tig 801 read 266183 pos 10103-18715 NOT confused by 5' edge to read 383880 - best edge read 403225 len 5070 erate 0.0077 score 5030.96 - alt edge len 1514 erate 0.0153 score 1490.84 - absdiff 3540.13 percdiff 108.5629 saved region 9232:15769 - 1 best edges are potentially confused break tig 801 into up to 3 pieces: 0 8732 unique (length 8732) 8732 16269 repeat (length 7537) 16269 25138 unique (length 8869) Creating Unitig 90822 Creating Unitig 90823 Creating Unitig 90824 For tig 801 unique region 0 8732 - 0/ 12 reads repeat/unique - unitig 90822 created. For tig 801 repeat region 8732 16269 - 30/ 0 reads repeat/unique - unitig 90823 created. For tig 801 unique region 16269 25138 - 0/ 11 reads repeat/unique - unitig 90824 created. Annotating repeats in reads for tig 803/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 6994:10951 - contained in read 37681 4466- 11729 discard region 11703:12347 - contained in read 440672 7813- 12901 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 808/90584. Annotated with 75 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3158:10814 - closest 5' read 327011 ( +2964) 194:6453 ( -4361) saved region 3158:10814 - closest 3' read 15260 ( -1426) 4584:10814 ( +0) search for confused edges: tig 808 read 327011 pos 194-6453 IS confused by 5' edge to read 176248 - best edge read 15260 len 1869 erate 0.0327 score 1807.88 - alt edge len 739 erate 0.0376 score 711.21 - absdiff 1096.67 percdiff 87.0685 tig 808 read 327011 pos 194-6453 IS confused by 5' edge to read 236899 - best edge read 15260 len 1869 erate 0.0327 score 1807.88 - alt edge len 533 erate 0.0227 score 520.90 - absdiff 1286.98 percdiff 110.5283 tig 808 read 327011 pos 194-6453 IS confused by 5' edge to read 361754 - best edge read 15260 len 1869 erate 0.0327 score 1807.88 - alt edge len 579 erate 0.0243 score 564.93 - absdiff 1242.95 percdiff 104.7662 tig 808 read 327011 pos 194-6453 IS confused by 5' edge to read 418361 - best edge read 15260 len 1869 erate 0.0327 score 1807.88 - alt edge len 530 erate 0.0247 score 516.91 - absdiff 1290.97 percdiff 111.0615 tig 808 read 15260 pos 4584-10814 IS confused by 3' edge to read 43611 - best edge read 327011 len 1887 erate 0.0327 score 1825.30 - alt edge len 1116 erate 0.0215 score 1092.01 - absdiff 733.29 percdiff 50.2717 tig 808 read 15260 pos 4584-10814 IS confused by 3' edge to read 264038 - best edge read 327011 len 1887 erate 0.0327 score 1825.30 - alt edge len 1099 erate 0.0265 score 1069.88 - absdiff 755.42 percdiff 52.1847 tig 808 read 15260 pos 4584-10814 IS confused by 3' edge to read 366916 - best edge read 327011 len 1887 erate 0.0327 score 1825.30 - alt edge len 1489 erate 0.0434 score 1424.38 - absdiff 400.92 percdiff 24.6743 tig 808 read 15260 pos 4584-10814 IS confused by 3' edge to read 400747 - best edge read 327011 len 1887 erate 0.0327 score 1825.30 - alt edge len 1258 erate 0.0291 score 1221.39 - absdiff 603.90 percdiff 39.6432 tig 808 read 15260 pos 4584-10814 IS confused by 3' edge to read 400749 - best edge read 327011 len 1887 erate 0.0327 score 1825.30 - alt edge len 1263 erate 0.0274 score 1228.39 - absdiff 596.90 percdiff 39.0938 tig 808 read 15260 pos 4584-10814 IS confused by 3' edge to read 400750 - best edge read 327011 len 1887 erate 0.0327 score 1825.30 - alt edge len 1236 erate 0.0306 score 1198.18 - absdiff 627.12 percdiff 41.4832 tig 808 read 15260 pos 4584-10814 IS confused by 3' edge to read 433343 - best edge read 327011 len 1887 erate 0.0327 score 1825.30 - alt edge len 948 erate 0.0318 score 917.85 - absdiff 907.44 percdiff 66.1606 tig 808 read 15260 pos 4584-10814 IS confused by 3' edge to read 433344 - best edge read 327011 len 1887 erate 0.0327 score 1825.30 - alt edge len 952 erate 0.0298 score 923.63 - absdiff 901.66 percdiff 65.6012 tig 808 read 15260 pos 4584-10814 IS confused by 3' edge to read 435911 - best edge read 327011 len 1887 erate 0.0327 score 1825.30 - alt edge len 1008 erate 0.0369 score 970.80 - absdiff 854.49 percdiff 61.1202 tig 808 read 15260 pos 4584-10814 IS confused by 3' edge to read 459664 - best edge read 327011 len 1887 erate 0.0327 score 1825.30 - alt edge len 631 erate 0.0290 score 612.70 - absdiff 1212.59 percdiff 99.4747 saved region 3158:10814 - 14 best edges are potentially confused break tig 808 into up to 2 pieces: 0 2658 unique (length 2658) 2658 10814 repeat (length 8156) Creating Unitig 90825 Creating Unitig 90826 For tig 808 unique region 0 2658 - 0/ 2 reads repeat/unique - unitig 90825 created. For tig 808 repeat region 2658 10814 - 2/ 0 reads repeat/unique - unitig 90826 created. Annotating repeats in reads for tig 809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 811/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:3320 - contained in read 529731 0- 6808 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 812/90584. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 31:4113 - contained in read 289291 0- 7393 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 816/90584. Annotated with 151 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 790:5881 - closest read 225272 ( +769) 21:5972 ( +91) (contained) saved region 790:5881 - closest read 225271 ( +660) 130:5983 ( +102) (contained) saved region 790:5881 - closest read 225273 ( +411) 379:5978 ( +97) (contained) saved region 790:5881 - closest read 280177 ( +208) 582:8980 ( +3099) (contained) saved region 790:5881 - closest read 103263 ( +56) 734:8400 ( +2519) (contained) saved region 790:5881 - closest read 308864 ( +14) 776:5967 ( +86) (contained) saved region 790:5881 - closest 5' read 280177 ( +208) 582:8980 ( +3099) saved region 790:5881 - closest 3' read 225272 ( +769) 21:5972 ( +91) saved region 7462:31891 - closest 5' read 396938 ( +5) 7457:13878 (-18013) saved region 7462:31891 - closest 3' read 338864 (-10550) 18012:31901 ( +10) search for confused edges: tig 816 read 338864 pos 18012-31901 IS confused by 5' edge to read 449506 - best edge read 401435 len 4095 erate 0.0037 score 4079.85 - alt edge len 3025 erate 0.0093 score 2996.87 - absdiff 1082.98 percdiff 30.6069 tig 816 read 338864 pos 18012-31901 IS confused by 5' edge to read 449510 - best edge read 401435 len 4095 erate 0.0037 score 4079.85 - alt edge len 3027 erate 0.0076 score 3003.99 - absdiff 1075.85 percdiff 30.3749 discard region 790:5881 - no confusion in best edges saved region 7462:31891 - 2 best edges are potentially confused break tig 816 into up to 3 pieces: 0 6962 unique (length 6962) 6962 32391 repeat (length 25429) 32391 33910 unique (length 1519) Creating Unitig 90827 Creating Unitig 90828 Creating Unitig 90829 For tig 816 unique region 0 6962 - 0/ 56 reads repeat/unique - unitig 90827 created. For tig 816 repeat region 6962 32391 - 40/ 0 reads repeat/unique - unitig 90828 created. For tig 816 unique region 32391 33910 - 0/ 7 reads repeat/unique - unitig 90829 created. Annotating repeats in reads for tig 825/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2312:3204 - contained in read 369108 0- 7357 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 829/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3066:0 - contained in read 363286 0- 6210 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 830/90584. Annotated with 52 overlaps. Scan reads to discard spanned repeats. discard region 11260:12927 - contained in read 462843 10011- 15530 thickest edges to the repeat regions: saved region 10077:10740 - closest read 462843 ( +66) 10011:15530 ( +4790) (contained) saved region 10077:10740 - closest 5' read 462843 ( +66) 10011:15530 ( +4790) saved region 10077:10740 - closest 3' read 462843 ( +66) 10011:15530 ( +4790) saved region 15547:17122 - closest read 288526 ( +8) 15539:23230 ( +6108) (contained) saved region 15547:17122 - closest 5' read 288526 ( +8) 15539:23230 ( +6108) saved region 15547:17122 - closest 3' read 288526 ( +8) 15539:23230 ( +6108) search for confused edges: discard region 10077:10740 - no confusion in best edges discard region 15547:17122 - no confusion in best edges Annotating repeats in reads for tig 831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 835/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 1959:2 - contained in read 113622 0- 5738 discard region 2007:932 - contained in read 113622 0- 5738 thickest edges to the repeat regions: saved region 6914:12411 - closest read 441686 ( +193) 6721:14698 ( +2287) (contained) saved region 6914:12411 - closest read 441687 ( +145) 6769:14785 ( +2374) (contained) saved region 6914:12411 - closest 5' read 441687 ( +145) 6769:14785 ( +2374) saved region 6914:12411 - closest 3' read 441686 ( +193) 6721:14698 ( +2287) search for confused edges: discard region 6914:12411 - no confusion in best edges Annotating repeats in reads for tig 839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 845/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 0:1199 - contained in read 386518 0- 6857 discard region 5249:6019 - contained in read 386518 0- 6857 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 847/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6335:9522 - closest 5' read 364440 ( +2768) 3567:9515 ( -7) saved region 6335:9522 - closest 3' read 82274 ( -2) 6337:9538 ( +16) search for confused edges: tig 847 read 364440 pos 3567-9515 IS confused by 3' edge to read 21349 - best edge read 360150 len 3173 erate 0.0243 score 3095.90 - alt edge len 2463 erate 0.0195 score 2414.97 - absdiff 680.92 percdiff 24.7121 tig 847 read 364440 pos 3567-9515 IS confused by 3' edge to read 105531 - best edge read 360150 len 3173 erate 0.0243 score 3095.90 - alt edge len 1056 erate 0.0199 score 1034.99 - absdiff 2060.91 percdiff 99.7807 tig 847 read 364440 pos 3567-9515 IS confused by 3' edge to read 122398 - best edge read 360150 len 3173 erate 0.0243 score 3095.90 - alt edge len 1423 erate 0.0376 score 1369.50 - absdiff 1726.40 percdiff 77.3236 tig 847 read 364440 pos 3567-9515 IS confused by 3' edge to read 342884 - best edge read 360150 len 3173 erate 0.0243 score 3095.90 - alt edge len 2406 erate 0.0274 score 2340.08 - absdiff 755.82 percdiff 27.8081 tig 847 read 360150 pos 6342-15113 IS confused by 3' edge to read 21350 - best edge read 364440 len 3177 erate 0.0243 score 3099.80 - alt edge len 3174 erate 0.0331 score 3068.94 - absdiff 30.86 percdiff 1.0005 tig 847 read 360150 pos 6342-15113 IS confused by 3' edge to read 176676 - best edge read 364440 len 3177 erate 0.0243 score 3099.80 - alt edge len 3175 erate 0.0233 score 3101.02 - absdiff 1.22 percdiff 0.0395 tig 847 read 360150 pos 6342-15113 IS confused by 3' edge to read 361006 - best edge read 364440 len 3177 erate 0.0243 score 3099.80 - alt edge len 2920 erate 0.0202 score 2861.02 - absdiff 238.78 percdiff 8.0118 saved region 6335:9522 - 7 best edges are potentially confused break tig 847 into up to 3 pieces: 0 5835 unique (length 5835) 5835 10022 repeat (length 4187) 10022 21802 unique (length 11780) Creating Unitig 90830 Creating Unitig 90831 Creating Unitig 90832 For tig 847 unique region 0 5835 - 0/ 12 reads repeat/unique - unitig 90830 created. For tig 847 repeat region 5835 10022 - 5/ 0 reads repeat/unique - unitig 90831 created. For tig 847 unique region 10022 21802 - 0/ 12 reads repeat/unique - unitig 90832 created. Annotating repeats in reads for tig 848/90584. Annotated with 111 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 856:8451 - closest 5' read 393351 ( +816) 40:7854 ( -597) saved region 856:8451 - closest 3' read 475152 ( -1435) 2291:8461 ( +10) search for confused edges: tig 848 read 393351 pos 40-7854 NOT confused by 5' edge to read 261805 - best edge read 475151 len 5571 erate 0.0271 score 5420.03 - alt edge len 2482 erate 0.0234 score 2423.92 - absdiff 2996.10 percdiff 76.3928 tig 848 read 475151 pos 2283-8446 NOT confused by 5' edge to read 261805 - best edge read 475152 len 6155 erate 0.0107 score 6089.14 - alt edge len 3056 erate 0.0223 score 2987.85 - absdiff 3101.29 percdiff 68.3330 tig 848 read 475151 pos 2283-8446 NOT confused by 3' edge to read 443100 - best edge read 393351 len 5618 erate 0.0271 score 5465.75 - alt edge len 686 erate 0.0204 score 672.01 - absdiff 4793.75 percdiff 156.2051 tig 848 read 475152 pos 2291-8461 NOT confused by 5' edge to read 443100 - best edge read 475151 len 6159 erate 0.0107 score 6093.10 - alt edge len 681 erate 0.0147 score 670.99 - absdiff 5422.11 percdiff 160.3205 discard region 856:8451 - no confusion in best edges Annotating repeats in reads for tig 852/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 6065:7566 - contained in read 396960 71- 7575 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 856/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 867/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4885:8054 - closest 5' read 339337 ( +3018) 1867:8042 ( -12) saved region 4885:8054 - closest 3' read 455925 ( -2645) 7530:10947 ( +2893) search for confused edges: tig 867 read 455925 pos 7530-10947 IS confused by 3' edge to read 336293 - best edge read 339337 len 512 erate 0.0358 score 493.67 - alt edge len 509 erate 0.0360 score 490.68 - absdiff 2.99 percdiff 0.6084 saved region 4885:8054 - 1 best edges are potentially confused break tig 867 into up to 3 pieces: 0 4385 unique (length 4385) 4385 8554 repeat (length 4169) 8554 19105 unique (length 10551) Creating Unitig 90833 Creating Unitig 90834 Creating Unitig 90835 For tig 867 unique region 0 4385 - 0/ 5 reads repeat/unique - unitig 90833 created. For tig 867 repeat region 4385 8554 - 3/ 0 reads repeat/unique - unitig 90834 created. For tig 867 unique region 8554 19105 - 0/ 15 reads repeat/unique - unitig 90835 created. Annotating repeats in reads for tig 870/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2:1225 - contained in read 89412 0- 8296 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 874/90584. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 2369:9182 - contained in read 442375 1863- 9183 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 875/90584. Annotated with 83 overlaps. Scan reads to discard spanned repeats. discard region 965:3812 - contained in read 442843 0- 5836 discard region 4447:10314 - contained in read 336495 1129- 10314 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 876/90584. Annotated with 56 overlaps. Scan reads to discard spanned repeats. discard region 11119:12026 - contained in read 221988 4551- 12026 thickest edges to the repeat regions: saved region 5021:10322 - closest read 221988 ( +470) 4551:12026 ( +1704) (contained) saved region 5021:10322 - closest read 221989 ( +470) 4551:10544 ( +222) (contained) saved region 5021:10322 - closest read 140332 ( +0) 5021:10336 ( +14) (contained) saved region 5021:10322 - closest 5' read 221988 ( +470) 4551:12026 ( +1704) saved region 5021:10322 - closest 3' read 221988 ( +470) 4551:12026 ( +1704) search for confused edges: discard region 5021:10322 - no confusion in best edges Annotating repeats in reads for tig 880/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 8917:11202 - contained in read 201824 5944- 11202 thickest edges to the repeat regions: saved region 5239:7535 - closest 5' read 515152 ( +780) 4459:6922 ( -613) saved region 5239:7535 - closest 3' read 354680 ( -228) 5467:7549 ( +14) search for confused edges: discard region 5239:7535 - no confusion in best edges Annotating repeats in reads for tig 882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 888/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 956:1632 - contained in read 343943 0- 6308 discard region 7831:9835 - contained in read 460402 5257- 11112 discard region 10390:11029 - contained in read 460402 5257- 11112 thickest edges to the repeat regions: saved region 3346:7362 - closest 5' read 104145 ( +0) 3346:7351 ( -11) saved region 3346:7362 - closest 3' read 460402 ( -1911) 5257:11112 ( +3750) search for confused edges: tig 888 read 460402 pos 5257-11112 IS confused by 5' edge to read 104144 - best edge read 104145 len 2094 erate 0.0339 score 2023.01 - alt edge len 1448 erate 0.0258 score 1410.64 - absdiff 612.37 percdiff 35.6688 saved region 3346:7362 - 1 best edges are potentially confused break tig 888 into up to 3 pieces: 0 2846 unique (length 2846) 2846 7862 repeat (length 5016) 7862 11112 unique (length 3250) Creating Unitig 90836 Creating Unitig 90837 Creating Unitig 90838 For tig 888 unique region 0 2846 - 0/ 8 reads repeat/unique - unitig 90836 created. For tig 888 repeat region 2846 7862 - 4/ 0 reads repeat/unique - unitig 90837 created. For tig 888 unique region 7862 11112 - 0/ 5 reads repeat/unique - unitig 90838 created. Annotating repeats in reads for tig 889/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 896/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 0:7302 - contained in read 164276 0- 8152 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 898/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 2433:20 - contained in read 477264 0- 7758 discard region 2686:3442 - contained in read 477264 0- 7758 discard region 6100:15686 - contained in read 477263 17- 15686 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 906/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 517:1241 - contained in read 491990 6- 1241 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 907/90584. Annotated with 965 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:20905 - closest 5' read 186019 ( +0) 0:6924 (-13981) saved region 0:20905 - closest 3' read 492811 (-11919) 11919:20905 ( +0) search for confused edges: tig 907 read 186019 pos 0-6924 NOT confused by 5' edge to read 323386 - best edge read 186018 len 6917 erate 0.0104 score 6845.06 - alt edge len 1497 erate 0.0393 score 1438.17 - absdiff 5406.90 percdiff 130.5504 tig 907 read 186019 pos 0-6924 NOT confused by 5' edge to read 471001 - best edge read 186018 len 6917 erate 0.0104 score 6845.06 - alt edge len 3298 erate 0.0197 score 3233.03 - absdiff 3612.03 percdiff 71.6809 tig 907 read 186019 pos 0-6924 NOT confused by 5' edge to read 471002 - best edge read 186018 len 6917 erate 0.0104 score 6845.06 - alt edge len 3344 erate 0.0210 score 3273.78 - absdiff 3571.29 percdiff 70.5869 tig 907 read 186018 pos 2-7666 NOT confused by 3' edge to read 323385 - best edge read 356158 len 6945 erate 0.0325 score 6719.29 - alt edge len 2075 erate 0.0439 score 1983.91 - absdiff 4735.38 percdiff 108.8193 tig 907 read 186018 pos 2-7666 NOT confused by 3' edge to read 323386 - best edge read 356158 len 6945 erate 0.0325 score 6719.29 - alt edge len 2242 erate 0.0406 score 2150.97 - absdiff 4568.31 percdiff 103.0029 tig 907 read 186018 pos 2-7666 NOT confused by 5' edge to read 417322 - best edge read 186019 len 6922 erate 0.0104 score 6850.01 - alt edge len 1533 erate 0.0190 score 1503.87 - absdiff 5346.14 percdiff 127.9917 tig 907 read 186018 pos 2-7666 NOT confused by 5' edge to read 417327 - best edge read 186019 len 6922 erate 0.0104 score 6850.01 - alt edge len 1512 erate 0.0186 score 1483.88 - absdiff 5366.13 percdiff 128.7787 tig 907 read 186018 pos 2-7666 NOT confused by 5' edge to read 417328 - best edge read 186019 len 6922 erate 0.0104 score 6850.01 - alt edge len 1534 erate 0.0150 score 1510.99 - absdiff 5339.02 percdiff 127.7125 tig 907 read 186018 pos 2-7666 NOT confused by 5' edge to read 435271 - best edge read 186019 len 6922 erate 0.0104 score 6850.01 - alt edge len 927 erate 0.0151 score 913.00 - absdiff 5937.01 percdiff 152.9563 tig 907 read 186018 pos 2-7666 NOT confused by 3' edge to read 471001 - best edge read 356158 len 6945 erate 0.0325 score 6719.29 - alt edge len 4047 erate 0.0179 score 3974.56 - absdiff 2744.73 percdiff 51.3329 tig 907 read 186018 pos 2-7666 NOT confused by 3' edge to read 471002 - best edge read 356158 len 6945 erate 0.0325 score 6719.29 - alt edge len 4093 erate 0.0189 score 4015.64 - absdiff 2703.65 percdiff 50.3710 tig 907 read 186018 pos 2-7666 NOT confused by 3' edge to read 492811 - best edge read 356158 len 6945 erate 0.0325 score 6719.29 - alt edge len 3019 erate 0.0300 score 2928.43 - absdiff 3790.86 percdiff 78.5856 tig 907 read 356158 pos 745-9896 NOT confused by 3' edge to read 417322 - best edge read 186018 len 6921 erate 0.0325 score 6696.07 - alt edge len 817 erate 0.0419 score 782.77 - absdiff 5913.30 percdiff 158.1342 tig 907 read 356158 pos 745-9896 NOT confused by 3' edge to read 417327 - best edge read 186018 len 6921 erate 0.0325 score 6696.07 - alt edge len 796 erate 0.0416 score 762.89 - absdiff 5933.18 percdiff 159.0888 tig 907 read 356158 pos 745-9896 NOT confused by 3' edge to read 417328 - best edge read 186018 len 6921 erate 0.0325 score 6696.07 - alt edge len 818 erate 0.0403 score 785.03 - absdiff 5911.03 percdiff 158.0257 tig 907 read 356158 pos 745-9896 NOT confused by 3' edge to read 495416 - best edge read 186018 len 6921 erate 0.0325 score 6696.07 - alt edge len 779 erate 0.0270 score 757.97 - absdiff 5938.10 percdiff 159.3258 tig 907 read 333752 pos 4058-15580 NOT confused by 3' edge to read 417322 - best edge read 356158 len 5838 erate 0.0213 score 5713.65 - alt edge len 2650 erate 0.0300 score 2570.50 - absdiff 3143.15 percdiff 75.8835 tig 907 read 333752 pos 4058-15580 NOT confused by 3' edge to read 417327 - best edge read 356158 len 5838 erate 0.0213 score 5713.65 - alt edge len 2629 erate 0.0297 score 2550.92 - absdiff 3162.73 percdiff 76.5371 tig 907 read 333752 pos 4058-15580 NOT confused by 3' edge to read 417328 - best edge read 356158 len 5838 erate 0.0213 score 5713.65 - alt edge len 2651 erate 0.0283 score 2575.98 - absdiff 3137.67 percdiff 75.7012 tig 907 read 333752 pos 4058-15580 NOT confused by 3' edge to read 477647 - best edge read 356158 len 5838 erate 0.0213 score 5713.65 - alt edge len 2099 erate 0.0372 score 2020.92 - absdiff 3692.73 percdiff 95.4865 tig 907 read 333752 pos 4058-15580 NOT confused by 3' edge to read 513687 - best edge read 356158 len 5838 erate 0.0213 score 5713.65 - alt edge len 1726 erate 0.0290 score 1675.95 - absdiff 4037.70 percdiff 109.2808 tig 907 read 492811 pos 11919-20905 IS confused by 5' edge to read 186018 - best edge read 333752 len 3661 erate 0.0375 score 3523.71 - alt edge len 2972 erate 0.0300 score 2882.84 - absdiff 640.87 percdiff 20.0068 tig 907 read 492811 pos 11919-20905 IS confused by 5' edge to read 417322 - best edge read 333752 len 3661 erate 0.0375 score 3523.71 - alt edge len 2045 erate 0.0353 score 1972.81 - absdiff 1550.90 percdiff 56.4321 tig 907 read 492811 pos 11919-20905 IS confused by 5' edge to read 417327 - best edge read 333752 len 3661 erate 0.0375 score 3523.71 - alt edge len 2026 erate 0.0332 score 1958.74 - absdiff 1564.98 percdiff 57.0904 tig 907 read 492811 pos 11919-20905 IS confused by 5' edge to read 417328 - best edge read 333752 len 3661 erate 0.0375 score 3523.71 - alt edge len 2046 erate 0.0353 score 1973.78 - absdiff 1549.94 percdiff 56.3871 saved region 0:20905 - 4 best edges are potentially confused Annotating repeats in reads for tig 917/90584. Annotated with 101 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3902:12224 - closest 5' read 490797 ( +3831) 71:11926 ( -298) saved region 3902:12224 - closest 3' read 31418 ( -5559) 9461:15391 ( +3167) search for confused edges: discard region 3902:12224 - no confusion in best edges Annotating repeats in reads for tig 918/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7308:13705 - closest read 323420 ( +255) 7053:19344 ( +5639) (contained) saved region 7308:13705 - closest 5' read 323420 ( +255) 7053:19344 ( +5639) saved region 7308:13705 - closest 3' read 323420 ( +255) 7053:19344 ( +5639) search for confused edges: discard region 7308:13705 - no confusion in best edges Annotating repeats in reads for tig 919/90584. Annotated with 70 overlaps. Scan reads to discard spanned repeats. discard region 19535:22184 - contained in read 90437 17137- 22475 thickest edges to the repeat regions: saved region 10835:17025 - closest read 482698 ( +5414) 5421:17027 ( +2) (contained) saved region 10835:17025 - closest 5' read 482698 ( +5414) 5421:17027 ( +2) saved region 10835:17025 - closest 3' read 482698 ( +5414) 5421:17027 ( +2) search for confused edges: discard region 10835:17025 - no confusion in best edges Annotating repeats in reads for tig 926/90584. Annotated with 323 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:7344 - closest 5' read 46011 ( +0) 0:5323 ( -2021) saved region 0:7344 - closest 3' read 531200 ( -1137) 1137:7502 ( +158) search for confused edges: tig 926 read 531200 pos 1137-7502 IS confused by 5' edge to read 500433 - best edge read 46011 len 4186 erate 0.0392 score 4021.91 - alt edge len 2161 erate 0.0371 score 2080.83 - absdiff 1941.08 percdiff 63.6135 tig 926 read 531200 pos 1137-7502 NOT confused by 5' edge to read 526907 - best edge read 46011 len 4186 erate 0.0392 score 4021.91 - alt edge len 1518 erate 0.0349 score 1465.02 - absdiff 2556.89 percdiff 93.1992 saved region 0:7344 - 1 best edges are potentially confused Annotating repeats in reads for tig 927/90584. Annotated with 71 overlaps. Scan reads to discard spanned repeats. discard region 6781:11241 - contained in read 1273 4364- 11241 thickest edges to the repeat regions: saved region 2664:6722 - closest 5' read 172344 ( +2664) 0:6704 ( -18) saved region 2664:6722 - closest 3' read 110887 ( -841) 3505:8258 ( +1536) search for confused edges: tig 927 read 418651 pos 3555-10925 IS confused by 3' edge to read 30276 - best edge read 172344 len 3149 erate 0.0216 score 3080.98 - alt edge len 3127 erate 0.0313 score 3029.12 - absdiff 51.86 percdiff 1.6974 tig 927 read 418651 pos 3555-10925 IS confused by 3' edge to read 177709 - best edge read 172344 len 3149 erate 0.0216 score 3080.98 - alt edge len 3053 erate 0.0383 score 2936.07 - absdiff 144.91 percdiff 4.8167 tig 927 read 418651 pos 3555-10925 IS confused by 3' edge to read 426470 - best edge read 172344 len 3149 erate 0.0216 score 3080.98 - alt edge len 2639 erate 0.0326 score 2552.97 - absdiff 528.01 percdiff 18.7440 tig 927 read 418651 pos 3555-10925 IS confused by 3' edge to read 426471 - best edge read 172344 len 3149 erate 0.0216 score 3080.98 - alt edge len 2771 erate 0.0282 score 2692.86 - absdiff 388.12 percdiff 13.4442 saved region 2664:6722 - 4 best edges are potentially confused break tig 927 into up to 3 pieces: 0 2164 unique (length 2164) 2164 7222 repeat (length 5058) 7222 11241 unique (length 4019) Creating Unitig 90839 Creating Unitig 90840 Creating Unitig 90841 For tig 927 unique region 0 2164 - 0/ 1 reads repeat/unique - unitig 90839 created. For tig 927 repeat region 2164 7222 - 5/ 0 reads repeat/unique - unitig 90841 created. For tig 927 unique region 7222 11241 - 0/ 6 reads repeat/unique - unitig 90840 created. Annotating repeats in reads for tig 929/90584. Annotated with 84 overlaps. Scan reads to discard spanned repeats. discard region 5174:6560 - contained in read 460259 0- 9951 discard region 10463:12007 - contained in read 321815 7861- 13369 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 934/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 936/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5875:10665 - closest 5' read 234010 ( +1967) 3908:10648 ( -17) saved region 5875:10665 - closest 3' read 340713 ( -3079) 8954:16985 ( +6320) search for confused edges: tig 936 read 234014 pos 3900-10637 IS confused by 5' edge to read 491969 - best edge read 340713 len 1683 erate 0.0424 score 1611.64 - alt edge len 1059 erate 0.0388 score 1017.91 - absdiff 593.73 percdiff 45.1583 saved region 5875:10665 - 1 best edges are potentially confused break tig 936 into up to 3 pieces: 0 5375 unique (length 5375) 5375 11165 repeat (length 5790) 11165 17472 unique (length 6307) Creating Unitig 90842 Creating Unitig 90843 Creating Unitig 90844 For tig 936 unique region 0 5375 - 0/ 15 reads repeat/unique - unitig 90842 created. For tig 936 repeat region 5375 11165 - 3/ 0 reads repeat/unique - unitig 90843 created. For tig 936 unique region 11165 17472 - 0/ 8 reads repeat/unique - unitig 90844 created. Annotating repeats in reads for tig 937/90584. Annotated with 95 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:12340 - closest 5' read 430650 ( +0) 0:6804 ( -5536) saved region 0:12340 - closest 3' read 11260 ( -2666) 2666:16255 ( +3915) search for confused edges: tig 937 read 430650 pos 0-6804 NOT confused by 5' edge to read 111785 - best edge read 124904 len 6057 erate 0.0247 score 5907.39 - alt edge len 1287 erate 0.0218 score 1258.94 - absdiff 4648.45 percdiff 129.7301 tig 937 read 430650 pos 0-6804 NOT confused by 5' edge to read 188938 - best edge read 124904 len 6057 erate 0.0247 score 5907.39 - alt edge len 2770 erate 0.0308 score 2684.68 - absdiff 3222.71 percdiff 75.0158 tig 937 read 124904 pos 743-7984 NOT confused by 3' edge to read 111785 - best edge read 507055 len 6826 erate 0.0206 score 6685.38 - alt edge len 2474 erate 0.0121 score 2444.06 - absdiff 4241.32 percdiff 92.9151 tig 937 read 124904 pos 743-7984 NOT confused by 5' edge to read 132648 - best edge read 430650 len 6061 erate 0.0247 score 5911.29 - alt edge len 1699 erate 0.0314 score 1645.65 - absdiff 4265.64 percdiff 112.8933 tig 937 read 124904 pos 743-7984 NOT confused by 3' edge to read 188938 - best edge read 507055 len 6826 erate 0.0206 score 6685.38 - alt edge len 3950 erate 0.0223 score 3861.91 - absdiff 2823.47 percdiff 53.5392 tig 937 read 507055 pos 1173-9725 NOT confused by 5' edge to read 111785 - best edge read 153913 len 8179 erate 0.0175 score 8035.87 - alt edge len 4220 erate 0.0135 score 4163.03 - absdiff 3872.84 percdiff 63.4949 tig 937 read 507055 pos 1173-9725 NOT confused by 3' edge to read 132648 - best edge read 124904 len 6811 erate 0.0206 score 6670.69 - alt edge len 1276 erate 0.0329 score 1234.02 - absdiff 5436.67 percdiff 137.5552 tig 937 read 507055 pos 1173-9725 NOT confused by 5' edge to read 188938 - best edge read 153913 len 8179 erate 0.0175 score 8035.87 - alt edge len 5697 erate 0.0183 score 5592.74 - absdiff 2443.12 percdiff 35.8528 tig 937 read 507055 pos 1173-9725 NOT confused by 3' edge to read 193580 - best edge read 124904 len 6811 erate 0.0206 score 6670.69 - alt edge len 1957 erate 0.0317 score 1894.96 - absdiff 4775.73 percdiff 111.5088 tig 937 read 153913 pos 1564-11508 NOT confused by 3' edge to read 111785 - best edge read 507055 len 8161 erate 0.0175 score 8018.18 - alt edge len 2649 erate 0.0155 score 2607.94 - absdiff 5410.24 percdiff 101.8291 tig 937 read 153913 pos 1564-11508 NOT confused by 3' edge to read 132648 - best edge read 507055 len 8161 erate 0.0175 score 8018.18 - alt edge len 910 erate 0.0264 score 885.98 - absdiff 7132.21 percdiff 160.1995 tig 937 read 153913 pos 1564-11508 NOT confused by 3' edge to read 193580 - best edge read 507055 len 8161 erate 0.0175 score 8018.18 - alt edge len 1575 erate 0.0296 score 1528.38 - absdiff 6489.80 percdiff 135.9610 tig 937 read 11260 pos 2666-16255 NOT confused by 5' edge to read 111785 - best edge read 153913 len 8842 erate 0.0124 score 8732.36 - alt edge len 1516 erate 0.0188 score 1487.50 - absdiff 7244.86 percdiff 141.7800 tig 937 read 11260 pos 2666-16255 NOT confused by 5' edge to read 132648 - best edge read 153913 len 8842 erate 0.0124 score 8732.36 - alt edge len 1441 erate 0.0125 score 1422.99 - absdiff 7309.37 percdiff 143.9512 tig 937 read 11260 pos 2666-16255 NOT confused by 5' edge to read 188938 - best edge read 153913 len 8842 erate 0.0124 score 8732.36 - alt edge len 3142 erate 0.0187 score 3083.24 - absdiff 5649.11 percdiff 95.6213 discard region 0:12340 - no confusion in best edges Annotating repeats in reads for tig 938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 940/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 11694:13853 - contained in read 97158 10334- 17633 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 942/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 943/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 12446:13632 - contained in read 17852 10245- 16307 discard region 13620:16333 - contained in read 17850 10254- 16381 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 944/90584. Annotated with 123 overlaps. Scan reads to discard spanned repeats. discard region 3138:8941 - contained in read 288579 2340- 10102 thickest edges to the repeat regions: saved region 12066:21074 - closest read 481368 ( +4968) 7098:21168 ( +94) (contained) saved region 12066:21074 - closest 5' read 481368 ( +4968) 7098:21168 ( +94) saved region 12066:21074 - closest 3' read 481368 ( +4968) 7098:21168 ( +94) search for confused edges: discard region 12066:21074 - no confusion in best edges Annotating repeats in reads for tig 948/90584. Annotated with 532 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1036:18714 - closest 5' read 20464 ( +1036) 0:10278 ( -8436) saved region 1036:18714 - closest 3' read 205460 ( -5902) 6938:18806 ( +92) search for confused edges: tig 948 read 20464 pos 0-10278 NOT confused by 3' edge to read 24052 - best edge read 386636 len 7990 erate 0.0281 score 7765.48 - alt edge len 2352 erate 0.0270 score 2288.50 - absdiff 5476.98 percdiff 108.9516 tig 948 read 20464 pos 0-10278 NOT confused by 3' edge to read 328695 - best edge read 386636 len 7990 erate 0.0281 score 7765.48 - alt edge len 3922 erate 0.0242 score 3827.09 - absdiff 3938.39 percdiff 67.9469 tig 948 read 20464 pos 0-10278 NOT confused by 3' edge to read 499728 - best edge read 386636 len 7990 erate 0.0281 score 7765.48 - alt edge len 720 erate 0.0208 score 705.02 - absdiff 7060.46 percdiff 166.7069 tig 948 read 20464 pos 0-10278 NOT confused by 3' edge to read 499730 - best edge read 386636 len 7990 erate 0.0281 score 7765.48 - alt edge len 884 erate 0.0215 score 864.99 - absdiff 6900.49 percdiff 159.9098 tig 948 read 386636 pos 2288-10251 NOT confused by 5' edge to read 24052 - best edge read 358837 len 6823 erate 0.0289 score 6625.82 - alt edge len 2377 erate 0.0304 score 2304.74 - absdiff 4321.08 percdiff 96.7706 tig 948 read 386636 pos 2288-10251 NOT confused by 5' edge to read 328695 - best edge read 358837 len 6823 erate 0.0289 score 6625.82 - alt edge len 3923 erate 0.0311 score 3800.99 - absdiff 2824.82 percdiff 54.1838 tig 948 read 386636 pos 2288-10251 NOT confused by 5' edge to read 499728 - best edge read 358837 len 6823 erate 0.0289 score 6625.82 - alt edge len 749 erate 0.0308 score 725.93 - absdiff 5899.88 percdiff 160.5029 tig 948 read 386636 pos 2288-10251 NOT confused by 5' edge to read 499730 - best edge read 358837 len 6823 erate 0.0289 score 6625.82 - alt edge len 913 erate 0.0308 score 884.88 - absdiff 5740.94 percdiff 152.8736 tig 948 read 358837 pos 3428-13711 NOT confused by 3' edge to read 499728 - best edge read 172179 len 6849 erate 0.0277 score 6659.28 - alt edge len 580 erate 0.0347 score 559.87 - absdiff 6099.41 percdiff 168.9784 tig 948 read 358837 pos 3428-13711 NOT confused by 3' edge to read 499730 - best edge read 172179 len 6849 erate 0.0277 score 6659.28 - alt edge len 738 erate 0.0379 score 710.03 - absdiff 5949.25 percdiff 161.4602 tig 948 read 172179 pos 6862-16575 NOT confused by 3' edge to read 499728 - best edge read 205460 len 9637 erate 0.0279 score 9368.13 - alt edge len 1526 erate 0.0353 score 1472.13 - absdiff 7896.00 percdiff 145.6791 tig 948 read 172179 pos 6862-16575 NOT confused by 3' edge to read 499730 - best edge read 205460 len 9637 erate 0.0279 score 9368.13 - alt edge len 1690 erate 0.0316 score 1636.60 - absdiff 7731.53 percdiff 140.5130 discard region 1036:18714 - no confusion in best edges Annotating repeats in reads for tig 949/90584. Annotated with 649 overlaps. Scan reads to discard spanned repeats. discard region 0:1891 - contained in read 26236 0- 8473 discard region 2090:4053 - contained in read 26236 0- 8473 thickest edges to the repeat regions: saved region 7865:28504 - closest 5' read 26232 ( +6877) 988:8557 (-19947) saved region 7865:28504 - closest 3' read 31020 (-18531) 26396:32957 ( +4453) search for confused edges: discard region 7865:28504 - no confusion in best edges Annotating repeats in reads for tig 950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 951/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:3236 - contained in read 272118 0- 4557 discard region 6059:9256 - contained in read 26950 3638- 9283 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 952/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 0:3831 - contained in read 284334 0- 5941 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 953/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 954/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 8047:10991 - contained in read 472007 3385- 10991 thickest edges to the repeat regions: saved region 0:7816 - closest 5' read 30276 ( +0) 0:7811 ( -5) saved region 0:7816 - closest 3' read 472009 ( -3193) 3193:10975 ( +3159) search for confused edges: discard region 0:7816 - no confusion in best edges Annotating repeats in reads for tig 955/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6726:12842 - closest read 146992 ( +331) 6395:13000 ( +158) (contained) saved region 6726:12842 - closest 5' read 146992 ( +331) 6395:13000 ( +158) saved region 6726:12842 - closest 3' read 146992 ( +331) 6395:13000 ( +158) search for confused edges: discard region 6726:12842 - no confusion in best edges Annotating repeats in reads for tig 957/90584. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 3581:6527 - contained in read 31754 0- 6527 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 958/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 0:4015 - contained in read 351916 0- 7996 discard region 5056:6228 - contained in read 351916 0- 7996 discard region 8244:10899 - contained in read 166700 5335- 11995 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 960/90584. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 1183:0 - contained in read 36000 0- 5161 thickest edges to the repeat regions: saved region 2712:7455 - closest 5' read 95165 ( +289) 2423:7418 ( -37) saved region 2712:7455 - closest 3' read 460882 ( -90) 2802:11034 ( +3579) saved region 12060:17182 - closest 5' read 43306 ( +5064) 6996:13175 ( -4007) saved region 12060:17182 - closest 3' read 328786 ( -137) 12197:17331 ( +149) search for confused edges: tig 960 read 489826 pos 182-7312 NOT confused by 3' edge to read 107453 - best edge read 460882 len 4510 erate 0.0047 score 4488.80 - alt edge len 1323 erate 0.0319 score 1280.80 - absdiff 3208.01 percdiff 111.2038 tig 960 read 489826 pos 182-7312 IS confused by 3' edge to read 135526 - best edge read 460882 len 4510 erate 0.0047 score 4488.80 - alt edge len 4430 erate 0.0045 score 4410.07 - absdiff 78.74 percdiff 1.7696 tig 960 read 489826 pos 182-7312 IS confused by 3' edge to read 135528 - best edge read 460882 len 4510 erate 0.0047 score 4488.80 - alt edge len 4447 erate 0.0045 score 4426.99 - absdiff 61.81 percdiff 1.3866 tig 960 read 489826 pos 182-7312 IS confused by 3' edge to read 135530 - best edge read 460882 len 4510 erate 0.0047 score 4488.80 - alt edge len 4455 erate 0.0034 score 4439.85 - absdiff 48.95 percdiff 1.0965 tig 960 read 489826 pos 182-7312 IS confused by 3' edge to read 336390 - best edge read 460882 len 4510 erate 0.0047 score 4488.80 - alt edge len 2467 erate 0.0308 score 2391.02 - absdiff 2097.79 percdiff 60.9838 tig 960 read 489826 pos 182-7312 IS confused by 3' edge to read 347874 - best edge read 460882 len 4510 erate 0.0047 score 4488.80 - alt edge len 4499 erate 0.0067 score 4468.86 - absdiff 19.95 percdiff 0.4453 tig 960 read 489826 pos 182-7312 NOT confused by 3' edge to read 355671 - best edge read 460882 len 4510 erate 0.0047 score 4488.80 - alt edge len 1321 erate 0.0319 score 1278.86 - absdiff 3209.94 percdiff 111.3083 saved region 2712:7455 - 5 best edges are potentially confused discard region 12060:17182 - no confusion in best edges break tig 960 into up to 3 pieces: 0 2212 unique (length 2212) 2212 7955 repeat (length 5743) 7955 24765 unique (length 16810) Creating Unitig 90845 Creating Unitig 90846 Creating Unitig 90847 For tig 960 unique region 0 2212 - 0/ 5 reads repeat/unique - unitig 90845 created. For tig 960 repeat region 2212 7955 - 11/ 0 reads repeat/unique - unitig 90846 created. For tig 960 unique region 7955 24765 - 0/ 10 reads repeat/unique - unitig 90847 created. Annotating repeats in reads for tig 961/90584. Annotated with 653 overlaps. Scan reads to discard spanned repeats. discard region 3:2912 - contained in read 240589 0- 6304 thickest edges to the repeat regions: saved region 3160:26458 - closest 5' read 240589 ( +3160) 0:6304 (-20154) saved region 3160:26458 - closest 3' read 315744 (-17132) 20292:26458 ( +0) search for confused edges: tig 961 read 23610 pos 4758-12266 NOT confused by 5' edge to read 184411 - best edge read 325067 len 5920 erate 0.0171 score 5818.77 - alt edge len 1803 erate 0.0166 score 1773.07 - absdiff 4045.70 percdiff 106.5802 tig 961 read 23610 pos 4758-12266 NOT confused by 5' edge to read 184412 - best edge read 325067 len 5920 erate 0.0171 score 5818.77 - alt edge len 1793 erate 0.0234 score 1751.04 - absdiff 4067.72 percdiff 107.4723 tig 961 read 23610 pos 4758-12266 IS confused by 5' edge to read 203115 - best edge read 325067 len 5920 erate 0.0171 score 5818.77 - alt edge len 4883 erate 0.0185 score 4792.66 - absdiff 1026.10 percdiff 19.3396 tig 961 read 23610 pos 4758-12266 IS confused by 3' edge to read 315244 - best edge read 240589 len 1546 erate 0.0382 score 1486.94 - alt edge len 653 erate 0.0444 score 624.01 - absdiff 862.94 percdiff 81.7581 tig 961 read 23610 pos 4758-12266 NOT confused by 5' edge to read 315744 - best edge read 325067 len 5920 erate 0.0171 score 5818.77 - alt edge len 2089 erate 0.0230 score 2040.95 - absdiff 3777.82 percdiff 96.1310 tig 961 read 23610 pos 4758-12266 IS confused by 5' edge to read 437781 - best edge read 325067 len 5920 erate 0.0171 score 5818.77 - alt edge len 5300 erate 0.0164 score 5213.08 - absdiff 605.69 percdiff 10.9807 tig 961 read 473397 pos 12177-18466 NOT confused by 3' edge to read 184411 - best edge read 36500 len 6130 erate 0.0258 score 5971.85 - alt edge len 745 erate 0.0174 score 732.04 - absdiff 5239.81 percdiff 156.3216 tig 961 read 473397 pos 12177-18466 NOT confused by 3' edge to read 184412 - best edge read 36500 len 6130 erate 0.0258 score 5971.85 - alt edge len 735 erate 0.0204 score 720.01 - absdiff 5251.84 percdiff 156.9622 tig 961 read 473397 pos 12177-18466 NOT confused by 3' edge to read 203115 - best edge read 36500 len 6130 erate 0.0258 score 5971.85 - alt edge len 791 erate 0.0165 score 777.95 - absdiff 5193.90 percdiff 153.8979 tig 961 read 473397 pos 12177-18466 NOT confused by 3' edge to read 240589 - best edge read 36500 len 6130 erate 0.0258 score 5971.85 - alt edge len 912 erate 0.0411 score 874.52 - absdiff 5097.33 percdiff 148.9062 tig 961 read 473397 pos 12177-18466 NOT confused by 3' edge to read 315744 - best edge read 36500 len 6130 erate 0.0258 score 5971.85 - alt edge len 1026 erate 0.0176 score 1007.94 - absdiff 4963.90 percdiff 142.2365 tig 961 read 36500 pos 12277-20986 NOT confused by 3' edge to read 184411 - best edge read 315244 len 7800 erate 0.0384 score 7500.48 - alt edge len 3268 erate 0.0291 score 3172.90 - absdiff 4327.58 percdiff 81.0911 tig 961 read 36500 pos 12277-20986 NOT confused by 3' edge to read 184412 - best edge read 315244 len 7800 erate 0.0384 score 7500.48 - alt edge len 3258 erate 0.0323 score 3152.77 - absdiff 4347.71 percdiff 81.6223 tig 961 read 315244 pos 13186-21571 IS confused by 3' edge to read 23610 - best edge read 315744 len 1279 erate 0.0352 score 1233.98 - alt edge len 666 erate 0.0444 score 636.43 - absdiff 597.55 percdiff 63.8951 tig 961 read 315244 pos 13186-21571 IS confused by 3' edge to read 184411 - best edge read 315744 len 1279 erate 0.0352 score 1233.98 - alt edge len 1004 erate 0.0189 score 985.02 - absdiff 248.95 percdiff 22.4384 tig 961 read 315244 pos 13186-21571 IS confused by 3' edge to read 184412 - best edge read 315744 len 1279 erate 0.0352 score 1233.98 - alt edge len 994 erate 0.0241 score 970.04 - absdiff 263.93 percdiff 23.9502 tig 961 read 315244 pos 13186-21571 IS confused by 3' edge to read 203115 - best edge read 315744 len 1279 erate 0.0352 score 1233.98 - alt edge len 1050 erate 0.0229 score 1025.95 - absdiff 208.02 percdiff 18.4098 tig 961 read 315244 pos 13186-21571 NOT confused by 5' edge to read 240589 - best edge read 36500 len 7673 erate 0.0384 score 7378.36 - alt edge len 3443 erate 0.0429 score 3295.30 - absdiff 4083.06 percdiff 76.5073 saved region 3160:26458 - 7 best edges are potentially confused break tig 961 into up to 2 pieces: 0 2660 unique (length 2660) 2660 26458 repeat (length 23798) Creating Unitig 90848 Creating Unitig 90849 For tig 961 unique region 0 2660 - 0/ 6 reads repeat/unique - unitig 90848 created. For tig 961 repeat region 2660 26458 - 101/ 0 reads repeat/unique - unitig 90849 created. Annotating repeats in reads for tig 962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 963/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 964/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 14427:14947 - contained in read 6797 9885- 18353 thickest edges to the repeat regions: saved region 4699:6444 - closest read 39952 ( +4699) 0:6531 ( +87) (contained) saved region 4699:6444 - closest read 39950 ( +4670) 29:6588 ( +144) (contained) saved region 4699:6444 - closest read 162892 ( +4647) 52:6658 ( +214) (contained) saved region 4699:6444 - closest read 162893 ( +4629) 70:6639 ( +195) (contained) saved region 4699:6444 - closest read 39955 ( +4516) 183:6605 ( +161) (contained) saved region 4699:6444 - closest read 39953 ( +4509) 190:6557 ( +113) (contained) saved region 4699:6444 - closest 5' read 162892 ( +4647) 52:6658 ( +214) saved region 4699:6444 - closest 3' read 39952 ( +4699) 0:6531 ( +87) search for confused edges: discard region 4699:6444 - no confusion in best edges Annotating repeats in reads for tig 965/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 966/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 7895:8967 - contained in read 88183 1587- 13693 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 974/90584. Annotated with 110 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3017:6683 - closest read 516329 ( +1704) 1313:6685 ( +2) (contained) saved region 3017:6683 - closest 5' read 516329 ( +1704) 1313:6685 ( +2) saved region 3017:6683 - closest 3' read 516329 ( +1704) 1313:6685 ( +2) saved region 10335:13396 - closest read 46036 ( +1) 10334:15905 ( +2509) (contained) saved region 10335:13396 - closest 5' read 46036 ( +1) 10334:15905 ( +2509) saved region 10335:13396 - closest 3' read 46036 ( +1) 10334:15905 ( +2509) search for confused edges: tig 974 read 361510 pos 7174-13261 IS confused by 5' edge to read 190405 - best edge read 528753 len 2899 erate 0.0276 score 2818.99 - alt edge len 1027 erate 0.0186 score 1007.90 - absdiff 1811.09 percdiff 94.6509 tig 974 read 528753 pos 10340-15820 IS confused by 3' edge to read 116207 - best edge read 361510 len 2921 erate 0.0276 score 2840.38 - alt edge len 1137 erate 0.0221 score 1111.87 - absdiff 1728.51 percdiff 87.4695 tig 974 read 528753 pos 10340-15820 IS confused by 3' edge to read 116210 - best edge read 361510 len 2921 erate 0.0276 score 2840.38 - alt edge len 1133 erate 0.0327 score 1095.95 - absdiff 1744.43 percdiff 88.6323 tig 974 read 528753 pos 10340-15820 IS confused by 3' edge to read 116211 - best edge read 361510 len 2921 erate 0.0276 score 2840.38 - alt edge len 1134 erate 0.0232 score 1107.69 - absdiff 1732.69 percdiff 87.7740 tig 974 read 528753 pos 10340-15820 IS confused by 3' edge to read 130688 - best edge read 361510 len 2921 erate 0.0276 score 2840.38 - alt edge len 1997 erate 0.0348 score 1927.50 - absdiff 912.88 percdiff 38.2927 tig 974 read 528753 pos 10340-15820 IS confused by 3' edge to read 151562 - best edge read 361510 len 2921 erate 0.0276 score 2840.38 - alt edge len 1947 erate 0.0236 score 1901.05 - absdiff 939.33 percdiff 39.6222 tig 974 read 528753 pos 10340-15820 IS confused by 3' edge to read 170266 - best edge read 361510 len 2921 erate 0.0276 score 2840.38 - alt edge len 855 erate 0.0424 score 818.75 - absdiff 2021.63 percdiff 110.4980 tig 974 read 528753 pos 10340-15820 IS confused by 3' edge to read 324035 - best edge read 361510 len 2921 erate 0.0276 score 2840.38 - alt edge len 2822 erate 0.0210 score 2762.74 - absdiff 77.64 percdiff 2.7714 tig 974 read 528753 pos 10340-15820 IS confused by 3' edge to read 385142 - best edge read 361510 len 2921 erate 0.0276 score 2840.38 - alt edge len 1439 erate 0.0313 score 1393.96 - absdiff 1446.42 percdiff 68.3186 discard region 3017:6683 - no confusion in best edges saved region 10335:13396 - 9 best edges are potentially confused break tig 974 into up to 3 pieces: 0 9835 unique (length 9835) 9835 13896 repeat (length 4061) 13896 15905 unique (length 2009) Creating Unitig 90850 Creating Unitig 90851 Creating Unitig 90852 For tig 974 unique region 0 9835 - 0/ 38 reads repeat/unique - unitig 90850 created. For tig 974 repeat region 9835 13896 - 1/ 0 reads repeat/unique - unitig 90852 created. For tig 974 unique region 13896 15905 - 0/ 3 reads repeat/unique - unitig 90851 created. Annotating repeats in reads for tig 975/90584. Annotated with 957 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9214 - closest 5' read 143524 ( +0) 0:6035 ( -3179) saved region 0:9214 - closest 3' read 408224 ( -4108) 4108:10764 ( +1550) search for confused edges: tig 975 read 143524 pos 0-6035 NOT confused by 5' edge to read 62033 - best edge read 47583 len 5645 erate 0.0261 score 5497.67 - alt edge len 2082 erate 0.0250 score 2029.95 - absdiff 3467.72 percdiff 92.1332 tig 975 read 47583 pos 385-6646 IS confused by 3' edge to read 62033 - best edge read 408220 len 2199 erate 0.0246 score 2144.90 - alt edge len 2357 erate 0.0289 score 2288.88 - absdiff 143.98 percdiff 6.4946 tig 975 read 47583 pos 385-6646 IS confused by 5' edge to read 223482 - best edge read 143524 len 5650 erate 0.0261 score 5502.53 - alt edge len 5618 erate 0.0305 score 5446.65 - absdiff 55.88 percdiff 1.0208 tig 975 read 47583 pos 385-6646 NOT confused by 5' edge to read 283742 - best edge read 143524 len 5650 erate 0.0261 score 5502.53 - alt edge len 2324 erate 0.0264 score 2262.65 - absdiff 3239.89 percdiff 83.4466 tig 975 read 47583 pos 385-6646 IS confused by 3' edge to read 392719 - best edge read 408220 len 2199 erate 0.0246 score 2144.90 - alt edge len 1170 erate 0.0427 score 1120.04 - absdiff 1024.86 percdiff 62.7798 tig 975 read 47583 pos 385-6646 IS confused by 5' edge to read 398007 - best edge read 143524 len 5650 erate 0.0261 score 5502.53 - alt edge len 5444 erate 0.0267 score 5298.65 - absdiff 203.89 percdiff 3.7753 tig 975 read 47583 pos 385-6646 IS confused by 5' edge to read 516035 - best edge read 143524 len 5650 erate 0.0261 score 5502.53 - alt edge len 4115 erate 0.0373 score 3961.51 - absdiff 1541.02 percdiff 32.5659 tig 975 read 408220 pos 4447-11291 IS confused by 5' edge to read 223482 - best edge read 143524 len 2604 erate 0.0166 score 2560.77 - alt edge len 2238 erate 0.0194 score 2194.58 - absdiff 366.19 percdiff 15.4012 tig 975 read 408220 pos 4447-11291 IS confused by 5' edge to read 283742 - best edge read 143524 len 2604 erate 0.0166 score 2560.77 - alt edge len 2246 erate 0.0305 score 2177.50 - absdiff 383.28 percdiff 16.1779 tig 975 read 408220 pos 4447-11291 IS confused by 5' edge to read 306337 - best edge read 143524 len 2604 erate 0.0166 score 2560.77 - alt edge len 2297 erate 0.0247 score 2240.26 - absdiff 320.51 percdiff 13.3517 tig 975 read 408220 pos 4447-11291 IS confused by 5' edge to read 379213 - best edge read 143524 len 2604 erate 0.0166 score 2560.77 - alt edge len 1414 erate 0.0327 score 1367.76 - absdiff 1193.01 percdiff 60.7357 tig 975 read 408220 pos 4447-11291 IS confused by 5' edge to read 398007 - best edge read 143524 len 2604 erate 0.0166 score 2560.77 - alt edge len 1894 erate 0.0283 score 1840.40 - absdiff 720.37 percdiff 32.7355 tig 975 read 408220 pos 4447-11291 IS confused by 5' edge to read 422377 - best edge read 143524 len 2604 erate 0.0166 score 2560.77 - alt edge len 2039 erate 0.0202 score 1997.81 - absdiff 562.96 percdiff 24.6989 tig 975 read 408220 pos 4447-11291 IS confused by 5' edge to read 423304 - best edge read 143524 len 2604 erate 0.0166 score 2560.77 - alt edge len 861 erate 0.0338 score 831.90 - absdiff 1728.88 percdiff 101.9182 tig 975 read 408220 pos 4447-11291 IS confused by 5' edge to read 423305 - best edge read 143524 len 2604 erate 0.0166 score 2560.77 - alt edge len 857 erate 0.0350 score 827.00 - absdiff 1733.77 percdiff 102.3543 saved region 0:9214 - 13 best edges are potentially confused break tig 975 into up to 2 pieces: 0 9714 repeat (length 9714) 9714 11291 unique (length 1577) Creating Unitig 90853 Creating Unitig 90854 For tig 975 repeat region 0 9714 - 20/ 0 reads repeat/unique - unitig 90853 created. For tig 975 unique region 9714 11291 - 0/ 3 reads repeat/unique - unitig 90854 created. Annotating repeats in reads for tig 976/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 12835:18560 - contained in read 361541 8991- 19839 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 979/90584. Annotated with 60 overlaps. Scan reads to discard spanned repeats. discard region 13743:16201 - contained in read 9296 7698- 17493 thickest edges to the repeat regions: saved region 2206:12091 - closest 5' read 294222 ( +1937) 269:7836 ( -4255) saved region 2206:12091 - closest 3' read 217095 ( -4982) 7188:12254 ( +163) search for confused edges: tig 979 read 370149 pos 2650-10135 NOT confused by 3' edge to read 53717 - best edge read 294222 len 5185 erate 0.0081 score 5143.00 - alt edge len 575 erate 0.0316 score 556.83 - absdiff 4586.17 percdiff 160.9231 tig 979 read 370149 pos 2650-10135 NOT confused by 5' edge to read 67879 - best edge read 231373 len 3364 erate 0.0128 score 3320.94 - alt edge len 1164 erate 0.0190 score 1141.88 - absdiff 2179.06 percdiff 97.6537 tig 979 read 370149 pos 2650-10135 NOT confused by 5' edge to read 67880 - best edge read 231373 len 3364 erate 0.0128 score 3320.94 - alt edge len 1165 erate 0.0173 score 1144.85 - absdiff 2176.10 percdiff 97.4563 tig 979 read 370149 pos 2650-10135 NOT confused by 3' edge to read 99324 - best edge read 294222 len 5185 erate 0.0081 score 5143.00 - alt edge len 583 erate 0.0242 score 568.89 - absdiff 4574.11 percdiff 160.1609 tig 979 read 370149 pos 2650-10135 IS confused by 3' edge to read 271644 - best edge read 294222 len 5185 erate 0.0081 score 5143.00 - alt edge len 4051 erate 0.0190 score 3974.03 - absdiff 1168.97 percdiff 25.6437 saved region 2206:12091 - 1 best edges are potentially confused break tig 979 into up to 3 pieces: 0 1706 unique (length 1706) 1706 12591 repeat (length 10885) 12591 18172 unique (length 5581) Creating Unitig 90855 Creating Unitig 90856 Creating Unitig 90857 For tig 979 unique region 0 1706 - 0/ 6 reads repeat/unique - unitig 90855 created. For tig 979 repeat region 1706 12591 - 28/ 0 reads repeat/unique - unitig 90856 created. For tig 979 unique region 12591 18172 - 0/ 9 reads repeat/unique - unitig 90857 created. Annotating repeats in reads for tig 980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 984/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2847:3960 - contained in read 278666 32- 4537 discard region 6083:7073 - contained in read 245099 2848- 9450 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 985/90584. Annotated with 174 overlaps. Scan reads to discard spanned repeats. discard region 10219:15021 - contained in read 6861 7387- 15021 thickest edges to the repeat regions: saved region 0:8671 - closest 5' read 55059 ( +0) 0:2120 ( -6551) saved region 0:8671 - closest 3' read 305245 ( -4477) 4477:13663 ( +4992) search for confused edges: tig 985 read 55059 pos 0-2120 IS confused by 3' edge to read 381370 - best edge read 332406 len 2076 erate 0.0328 score 2007.91 - alt edge len 1672 erate 0.0360 score 1611.81 - absdiff 396.10 percdiff 21.8857 tig 985 read 332406 pos 44-8581 NOT confused by 5' edge to read 95969 - best edge read 19431 len 6808 erate 0.0270 score 6624.18 - alt edge len 4255 erate 0.0326 score 4116.29 - absdiff 2507.90 percdiff 46.6999 tig 985 read 332406 pos 44-8581 NOT confused by 5' edge to read 233190 - best edge read 19431 len 6808 erate 0.0270 score 6624.18 - alt edge len 3735 erate 0.0287 score 3627.81 - absdiff 2996.38 percdiff 58.4546 tig 985 read 332406 pos 44-8581 NOT confused by 5' edge to read 233191 - best edge read 19431 len 6808 erate 0.0270 score 6624.18 - alt edge len 3703 erate 0.0308 score 3588.95 - absdiff 3035.24 percdiff 59.4379 tig 985 read 332406 pos 44-8581 NOT confused by 5' edge to read 233192 - best edge read 19431 len 6808 erate 0.0270 score 6624.18 - alt edge len 3687 erate 0.0280 score 3583.76 - absdiff 3040.42 percdiff 59.5697 tig 985 read 19431 pos 1773-8633 IS confused by 3' edge to read 95969 - best edge read 451215 len 4486 erate 0.0331 score 4337.51 - alt edge len 4358 erate 0.0285 score 4233.80 - absdiff 103.72 percdiff 2.4201 tig 985 read 19431 pos 1773-8633 IS confused by 3' edge to read 233190 - best edge read 451215 len 4486 erate 0.0331 score 4337.51 - alt edge len 3839 erate 0.0241 score 3746.48 - absdiff 591.03 percdiff 14.6223 tig 985 read 19431 pos 1773-8633 IS confused by 3' edge to read 233191 - best edge read 451215 len 4486 erate 0.0331 score 4337.51 - alt edge len 3807 erate 0.0253 score 3710.68 - absdiff 626.83 percdiff 15.5769 tig 985 read 19431 pos 1773-8633 IS confused by 3' edge to read 233192 - best edge read 451215 len 4486 erate 0.0331 score 4337.51 - alt edge len 3791 erate 0.0231 score 3703.43 - absdiff 634.09 percdiff 15.7714 tig 985 read 19431 pos 1773-8633 IS confused by 3' edge to read 323151 - best edge read 451215 len 4486 erate 0.0331 score 4337.51 - alt edge len 2339 erate 0.0321 score 2263.92 - absdiff 2073.60 percdiff 62.8226 tig 985 read 19431 pos 1773-8633 NOT confused by 3' edge to read 456142 - best edge read 451215 len 4486 erate 0.0331 score 4337.51 - alt edge len 1500 erate 0.0296 score 1455.60 - absdiff 2881.91 percdiff 99.4945 tig 985 read 451215 pos 4147-8638 IS confused by 3' edge to read 233192 - best edge read 305245 len 4161 erate 0.0282 score 4043.66 - alt edge len 3798 erate 0.0396 score 3647.60 - absdiff 396.06 percdiff 10.2990 saved region 0:8671 - 7 best edges are potentially confused break tig 985 into up to 2 pieces: 0 9171 repeat (length 9171) 9171 15021 unique (length 5850) Creating Unitig 90858 Creating Unitig 90859 For tig 985 repeat region 0 9171 - 23/ 0 reads repeat/unique - unitig 90858 created. For tig 985 unique region 9171 15021 - 0/ 14 reads repeat/unique - unitig 90859 created. Annotating repeats in reads for tig 986/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 988/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2738:5454 - contained in read 159300 417- 5454 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 993/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7503:8055 - contained in read 335128 563- 9341 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 996/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11139:10426 - contained in read 214033 7921- 16012 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 997/90584. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 359:1322 - contained in read 66230 0- 8748 discard region 6437:10946 - contained in read 455950 5180- 14734 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 999/90584. Annotated with 66 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:4332 - closest 5' read 517204 ( +0) 0:4175 ( -157) saved region 0:4332 - closest 3' read 68431 ( -1595) 1595:7330 ( +2998) search for confused edges: tig 999 read 68431 pos 1595-7330 IS confused by 5' edge to read 34326 - best edge read 517204 len 2580 erate 0.0318 score 2497.96 - alt edge len 2580 erate 0.0342 score 2491.76 - absdiff 6.19 percdiff 0.2482 tig 999 read 68431 pos 1595-7330 IS confused by 5' edge to read 45713 - best edge read 517204 len 2580 erate 0.0318 score 2497.96 - alt edge len 2113 erate 0.0346 score 2039.89 - absdiff 458.07 percdiff 20.1887 tig 999 read 68431 pos 1595-7330 IS confused by 5' edge to read 45715 - best edge read 517204 len 2580 erate 0.0318 score 2497.96 - alt edge len 2291 erate 0.0350 score 2210.82 - absdiff 287.14 percdiff 12.1960 tig 999 read 68431 pos 1595-7330 IS confused by 5' edge to read 518906 - best edge read 517204 len 2580 erate 0.0318 score 2497.96 - alt edge len 1923 erate 0.0297 score 1865.89 - absdiff 632.07 percdiff 28.9685 saved region 0:4332 - 4 best edges are potentially confused break tig 999 into up to 2 pieces: 0 4832 repeat (length 4832) 4832 7330 unique (length 2498) Creating Unitig 90860 Creating Unitig 90861 For tig 999 repeat region 0 4832 - 9/ 0 reads repeat/unique - unitig 90860 created. For tig 999 unique region 4832 7330 - 0/ 8 reads repeat/unique - unitig 90861 created. Annotating repeats in reads for tig 1002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1004/90584. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 1:4778 - contained in read 479143 0- 6654 discard region 5501:4848 - contained in read 479143 0- 6654 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1005/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 5326:7921 - contained in read 530627 2812- 12869 discard region 14069:19047 - contained in read 126027 12512- 20279 discard region 21688:22254 - contained in read 423912 12661- 22836 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1006/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7115:10448 - closest 5' read 285400 ( +4175) 2940:9508 ( -940) saved region 7115:10448 - closest 3' read 31001 ( -5) 7120:13425 ( +2977) search for confused edges: tig 1006 read 285401 pos 2930-9454 IS confused by 5' edge to read 248964 - best edge read 31001 len 2334 erate 0.0288 score 2266.78 - alt edge len 1081 erate 0.0185 score 1061.00 - absdiff 1205.78 percdiff 72.4674 saved region 7115:10448 - 1 best edges are potentially confused break tig 1006 into up to 3 pieces: 0 6615 unique (length 6615) 6615 10948 repeat (length 4333) 10948 17967 unique (length 7019) Creating Unitig 90862 Creating Unitig 90863 Creating Unitig 90864 For tig 1006 unique region 0 6615 - 0/ 9 reads repeat/unique - unitig 90862 created. For tig 1006 repeat region 6615 10948 - 1/ 0 reads repeat/unique - unitig 90864 created. For tig 1006 unique region 10948 17967 - 0/ 9 reads repeat/unique - unitig 90863 created. Annotating repeats in reads for tig 1007/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5931:6766 - contained in read 75055 0- 7622 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1008/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1009/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1011/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 1657:8085 - contained in read 83971 5- 8085 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1012/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 8:5386 - contained in read 84676 0- 7816 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1015/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 449:10340 - closest 5' read 170654 ( +442) 7:8647 ( -1693) saved region 449:10340 - closest 3' read 143492 ( -6630) 7079:12406 ( +2066) search for confused edges: discard region 449:10340 - no confusion in best edges Annotating repeats in reads for tig 1016/90584. Annotated with 1697 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6570:37426 - closest 5' read 501801 ( +1248) 5322:15365 (-22061) saved region 6570:37426 - closest 3' read 236682 (-24735) 31305:37956 ( +530) search for confused edges: tig 1016 read 361465 pos 11548-20582 IS confused by 3' edge to read 307287 - best edge read 501801 len 3817 erate 0.0302 score 3701.73 - alt edge len 3004 erate 0.0184 score 2948.73 - absdiff 753.00 percdiff 22.6451 tig 1016 read 86247 pos 18605-25506 IS confused by 3' edge to read 236682 - best edge read 307287 len 4286 erate 0.0325 score 4146.70 - alt edge len 2124 erate 0.0297 score 2060.92 - absdiff 2085.79 percdiff 67.2009 tig 1016 read 86247 pos 18605-25506 NOT confused by 3' edge to read 236684 - best edge read 307287 len 4286 erate 0.0325 score 4146.70 - alt edge len 2052 erate 0.0312 score 1987.98 - absdiff 2158.73 percdiff 70.3778 tig 1016 read 86247 pos 18605-25506 NOT confused by 3' edge to read 481417 - best edge read 307287 len 4286 erate 0.0325 score 4146.70 - alt edge len 1129 erate 0.0363 score 1088.02 - absdiff 3058.69 percdiff 116.8615 tig 1016 read 86247 pos 18605-25506 NOT confused by 3' edge to read 481418 - best edge read 307287 len 4286 erate 0.0325 score 4146.70 - alt edge len 1122 erate 0.0339 score 1083.96 - absdiff 3062.74 percdiff 117.1070 tig 1016 read 454871 pos 19415-36561 NOT confused by 3' edge to read 481417 - best edge read 114548 len 9202 erate 0.0199 score 9018.88 - alt edge len 4250 erate 0.0233 score 4150.98 - absdiff 4867.91 percdiff 73.9250 tig 1016 read 454871 pos 19415-36561 NOT confused by 3' edge to read 481418 - best edge read 114548 len 9202 erate 0.0199 score 9018.88 - alt edge len 4243 erate 0.0203 score 4156.87 - absdiff 4862.01 percdiff 73.8025 tig 1016 read 307287 pos 21220-29946 NOT confused by 3' edge to read 236682 - best edge read 454872 len 6981 erate 0.0146 score 6879.08 - alt edge len 3912 erate 0.0176 score 3843.15 - absdiff 3035.93 percdiff 56.6287 tig 1016 read 307287 pos 21220-29946 IS confused by 3' edge to read 236684 - best edge read 454872 len 6981 erate 0.0146 score 6879.08 - alt edge len 5164 erate 0.0207 score 5057.11 - absdiff 1821.97 percdiff 30.5286 tig 1016 read 307287 pos 21220-29946 NOT confused by 3' edge to read 361465 - best edge read 454872 len 6981 erate 0.0146 score 6879.08 - alt edge len 2985 erate 0.0184 score 2930.08 - absdiff 3949.00 percdiff 80.5167 tig 1016 read 307287 pos 21220-29946 NOT confused by 3' edge to read 481417 - best edge read 454872 len 6981 erate 0.0146 score 6879.08 - alt edge len 2915 erate 0.0244 score 2843.87 - absdiff 4035.20 percdiff 83.0037 tig 1016 read 307287 pos 21220-29946 NOT confused by 3' edge to read 481418 - best edge read 454872 len 6981 erate 0.0146 score 6879.08 - alt edge len 2908 erate 0.0210 score 2846.93 - absdiff 4032.15 percdiff 82.9147 tig 1016 read 307287 pos 21220-29946 NOT confused by 5' edge to read 501801 - best edge read 86247 len 4297 erate 0.0325 score 4157.35 - alt edge len 2046 erate 0.0305 score 1983.60 - absdiff 2173.75 percdiff 70.7953 tig 1016 read 454872 pos 22965-35232 NOT confused by 3' edge to read 361465 - best edge read 307287 len 6978 erate 0.0146 score 6876.12 - alt edge len 2010 erate 0.0199 score 1970.00 - absdiff 4906.12 percdiff 110.9214 tig 1016 read 454872 pos 22965-35232 NOT confused by 5' edge to read 481417 - best edge read 114548 len 10506 erate 0.0246 score 10247.55 - alt edge len 4231 erate 0.0249 score 4125.65 - absdiff 6121.90 percdiff 85.1850 tig 1016 read 454872 pos 22965-35232 NOT confused by 5' edge to read 481418 - best edge read 114548 len 10506 erate 0.0246 score 10247.55 - alt edge len 2900 erate 0.0214 score 2837.94 - absdiff 7409.61 percdiff 113.2493 tig 1016 read 114548 pos 24726-36425 NOT confused by 3' edge to read 361465 - best edge read 454872 len 10464 erate 0.0246 score 10206.59 - alt edge len 1574 erate 0.0332 score 1521.74 - absdiff 8684.84 percdiff 148.1003 tig 1016 read 114548 pos 24726-36425 IS confused by 5' edge to read 481417 - best edge read 236682 len 5120 erate 0.0212 score 5011.46 - alt edge len 4132 erate 0.0258 score 4025.39 - absdiff 986.06 percdiff 21.8231 tig 1016 read 114548 pos 24726-36425 IS confused by 5' edge to read 481418 - best edge read 236682 len 5120 erate 0.0212 score 5011.46 - alt edge len 4125 erate 0.0236 score 4027.65 - absdiff 983.81 percdiff 21.7678 tig 1016 read 114548 pos 24726-36425 NOT confused by 3' edge to read 501801 - best edge read 454872 len 10464 erate 0.0246 score 10206.59 - alt edge len 6009 erate 0.0181 score 5900.24 - absdiff 4306.35 percdiff 53.4724 tig 1016 read 236682 pos 31305-37956 NOT confused by 5' edge to read 86247 - best edge read 454871 len 5268 erate 0.0183 score 5171.60 - alt edge len 2140 erate 0.0297 score 2076.44 - absdiff 3095.15 percdiff 85.4067 tig 1016 read 236682 pos 31305-37956 IS confused by 5' edge to read 307287 - best edge read 454871 len 5268 erate 0.0183 score 5171.60 - alt edge len 3924 erate 0.0176 score 3854.94 - absdiff 1316.66 percdiff 29.1731 tig 1016 read 236682 pos 31305-37956 NOT confused by 5' edge to read 361465 - best edge read 454871 len 5268 erate 0.0183 score 5171.60 - alt edge len 1603 erate 0.0233 score 1565.65 - absdiff 3605.95 percdiff 107.0451 tig 1016 read 236682 pos 31305-37956 IS confused by 5' edge to read 501801 - best edge read 454871 len 5268 erate 0.0183 score 5171.60 - alt edge len 4743 erate 0.0133 score 4679.92 - absdiff 491.68 percdiff 9.9818 saved region 6570:37426 - 7 best edges are potentially confused break tig 1016 into up to 3 pieces: 0 6070 unique (length 6070) 6070 37926 repeat (length 31856) 37926 38010 unique (length 84) Creating Unitig 90865 Creating Unitig 90866 Creating Unitig 90867 For tig 1016 unique region 0 6070 - 0/ 9 reads repeat/unique - unitig 90865 created. For tig 1016 repeat region 6070 37926 - 131/ 0 reads repeat/unique - unitig 90866 created. For tig 1016 unique region 37926 38010 - 0/ 2 reads repeat/unique - unitig 90867 created. Annotating repeats in reads for tig 1017/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1881:3702 - contained in read 86590 0- 5185 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1018/90584. Annotated with 145 overlaps. Scan reads to discard spanned repeats. discard region 12693:21216 - contained in read 86635 11105- 21216 thickest edges to the repeat regions: saved region 0:10948 - closest read 119611 ( +0) 0:11276 ( +328) (contained) saved region 0:10948 - closest 5' read 119611 ( +0) 0:11276 ( +328) saved region 0:10948 - closest 3' read 119611 ( +0) 0:11276 ( +328) search for confused edges: discard region 0:10948 - no confusion in best edges Annotating repeats in reads for tig 1019/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1021/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1024/90584. Annotated with 66 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4871:7863 - closest 5' read 94068 ( +4735) 136:5726 ( -2137) saved region 4871:7863 - closest 3' read 268613 ( -5) 4876:10934 ( +3071) saved region 9080:14853 - closest 5' read 268612 ( +4196) 4884:11109 ( -3744) saved region 9080:14853 - closest 3' read 176773 ( -19) 9099:15120 ( +267) search for confused edges: tig 1024 read 94068 pos 136-5726 IS confused by 5' edge to read 271201 - best edge read 268613 len 850 erate 0.0295 score 824.93 - alt edge len 564 erate 0.0214 score 551.93 - absdiff 272.99 percdiff 39.6548 tig 1024 read 268613 pos 4876-10934 IS confused by 5' edge to read 406403 - best edge read 94068 len 850 erate 0.0295 score 824.93 - alt edge len 712 erate 0.0408 score 682.95 - absdiff 141.97 percdiff 18.8311 tig 1024 read 268613 pos 4876-10934 IS confused by 5' edge to read 406405 - best edge read 94068 len 850 erate 0.0295 score 824.93 - alt edge len 710 erate 0.0384 score 682.74 - absdiff 142.19 percdiff 18.8622 saved region 4871:7863 - 3 best edges are potentially confused discard region 9080:14853 - no confusion in best edges break tig 1024 into up to 3 pieces: 0 4371 unique (length 4371) 4371 8363 repeat (length 3992) 8363 17834 unique (length 9471) Creating Unitig 90868 Creating Unitig 90869 Creating Unitig 90870 For tig 1024 unique region 0 4371 - 0/ 5 reads repeat/unique - unitig 90868 created. For tig 1024 repeat region 4371 8363 - 4/ 0 reads repeat/unique - unitig 90870 created. For tig 1024 unique region 8363 17834 - 0/ 34 reads repeat/unique - unitig 90869 created. Annotating repeats in reads for tig 1026/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4178:4945 - contained in read 208549 0- 6227 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1027/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 11577:13238 - contained in read 159453 6082- 13875 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1028/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 19671:17535 - contained in read 301942 13803- 19783 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1031/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1032/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4839:4284 - contained in read 107481 0- 6358 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1033/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1034/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6963:5982 - contained in read 154023 249- 7349 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1035/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1041/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1042/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1043/90584. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 6112:11148 - contained in read 412199 5033- 11154 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1044/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4978:4 - contained in read 191038 0- 8238 discard region 6282:8326 - contained in read 191035 5136- 10952 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1045/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7470:17880 - closest 5' read 397019 ( +1024) 6446:12240 ( -5640) saved region 7470:17880 - closest 3' read 197263 ( -4253) 11723:18709 ( +829) search for confused edges: discard region 7470:17880 - no confusion in best edges Annotating repeats in reads for tig 1046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1047/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1052/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1056/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1060/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 3715:4346 - contained in read 493181 0- 5855 discard region 10465:11086 - contained in read 371606 7310- 15017 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1061/90584. Annotated with 121 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5352:7202 - closest 5' read 137500 ( +5262) 90:6288 ( -914) saved region 5352:7202 - closest 3' read 340098 ( -3) 5355:10917 ( +3715) search for confused edges: discard region 5352:7202 - no confusion in best edges Annotating repeats in reads for tig 1062/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:2907 - contained in read 442101 0- 6398 discard region 3996:6552 - contained in read 138585 3271- 9411 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1063/90584. Annotated with 36 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11307:14645 - closest 5' read 60604 ( +4754) 6553:14579 ( -66) saved region 11307:14645 - closest 3' read 402051 ( -38) 11345:17994 ( +3349) search for confused edges: tig 1063 read 60604 pos 6553-14579 IS confused by 3' edge to read 503862 - best edge read 402051 len 3234 erate 0.0415 score 3099.79 - alt edge len 1057 erate 0.0433 score 1011.23 - absdiff 2088.56 percdiff 101.6077 saved region 11307:14645 - 1 best edges are potentially confused break tig 1063 into up to 3 pieces: 0 10807 unique (length 10807) 10807 15145 repeat (length 4338) 15145 22762 unique (length 7617) Creating Unitig 90871 Creating Unitig 90872 Creating Unitig 90873 For tig 1063 unique region 0 10807 - 0/ 26 reads repeat/unique - unitig 90871 created. For tig 1063 repeat region 10807 15145 - 45/ 0 reads repeat/unique - unitig 90872 created. For tig 1063 unique region 15145 22762 - 0/ 7 reads repeat/unique - unitig 90873 created. Annotating repeats in reads for tig 1064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1065/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1066/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 1213:5510 - contained in read 43878 11- 9938 discard region 16158:18597 - contained in read 314838 14917- 18610 thickest edges to the repeat regions: saved region 9358:14897 - closest 5' read 458969 ( +3191) 6167:11826 ( -3071) saved region 9358:14897 - closest 3' read 479441 ( -1257) 10615:18070 ( +3173) search for confused edges: tig 1066 read 479441 pos 10615-18070 NOT confused by 5' edge to read 143407 - best edge read 458969 len 1187 erate 0.0338 score 1146.88 - alt edge len 4290 erate 0.0171 score 4216.64 - absdiff 3069.76 percdiff 114.4682 discard region 9358:14897 - no confusion in best edges Annotating repeats in reads for tig 1067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1071/90584. Annotated with 142 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8143 - closest 5' read 154923 ( +0) 0:5751 ( -2392) saved region 0:8143 - closest 3' read 155468 ( -1761) 1761:8160 ( +17) search for confused edges: tig 1071 read 154923 pos 0-5751 IS confused by 3' edge to read 381096 - best edge read 154924 len 5692 erate 0.0209 score 5573.04 - alt edge len 4436 erate 0.0413 score 4252.79 - absdiff 1320.24 percdiff 26.8729 tig 1071 read 154924 pos 59-6050 NOT confused by 3' edge to read 381096 - best edge read 154923 len 5704 erate 0.0209 score 5584.79 - alt edge len 2696 erate 0.0401 score 2587.89 - absdiff 2996.90 percdiff 73.3394 tig 1071 read 155468 pos 1761-8160 NOT confused by 5' edge to read 81201 - best edge read 154924 len 4306 erate 0.0222 score 4210.41 - alt edge len 623 erate 0.0326 score 602.69 - absdiff 3607.72 percdiff 149.9125 tig 1071 read 155468 pos 1761-8160 NOT confused by 5' edge to read 220584 - best edge read 154924 len 4306 erate 0.0222 score 4210.41 - alt edge len 1536 erate 0.0293 score 1491.00 - absdiff 2719.41 percdiff 95.3945 tig 1071 read 155468 pos 1761-8160 NOT confused by 5' edge to read 313746 - best edge read 154924 len 4306 erate 0.0222 score 4210.41 - alt edge len 1695 erate 0.0419 score 1623.98 - absdiff 2586.43 percdiff 88.6615 tig 1071 read 155468 pos 1761-8160 NOT confused by 5' edge to read 359992 - best edge read 154924 len 4306 erate 0.0222 score 4210.41 - alt edge len 701 erate 0.0374 score 674.78 - absdiff 3535.62 percdiff 144.7487 tig 1071 read 155468 pos 1761-8160 NOT confused by 5' edge to read 359994 - best edge read 154924 len 4306 erate 0.0222 score 4210.41 - alt edge len 701 erate 0.0330 score 677.87 - absdiff 3532.54 percdiff 144.5312 tig 1071 read 155468 pos 1761-8160 NOT confused by 5' edge to read 381096 - best edge read 154924 len 4306 erate 0.0222 score 4210.41 - alt edge len 1001 erate 0.0240 score 976.98 - absdiff 3233.43 percdiff 124.6652 tig 1071 read 155468 pos 1761-8160 NOT confused by 5' edge to read 395007 - best edge read 154924 len 4306 erate 0.0222 score 4210.41 - alt edge len 1635 erate 0.0329 score 1581.21 - absdiff 2629.20 percdiff 90.7933 tig 1071 read 155468 pos 1761-8160 NOT confused by 5' edge to read 499659 - best edge read 154924 len 4306 erate 0.0222 score 4210.41 - alt edge len 1185 erate 0.0281 score 1151.70 - absdiff 3058.71 percdiff 114.0859 saved region 0:8143 - 1 best edges are potentially confused Annotating repeats in reads for tig 1072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1075/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 9684:10336 - contained in read 413854 3444- 11761 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1077/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 13013:14338 - contained in read 449688 12047- 16938 thickest edges to the repeat regions: saved region 8148:8791 - closest read 320283 ( +3) 8145:13973 ( +5182) (contained) saved region 8148:8791 - closest 5' read 320283 ( +3) 8145:13973 ( +5182) saved region 8148:8791 - closest 3' read 320283 ( +3) 8145:13973 ( +5182) search for confused edges: discard region 8148:8791 - no confusion in best edges Annotating repeats in reads for tig 1078/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 11598:15940 - contained in read 316210 7993- 17052 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1079/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 5038:9816 - contained in read 393048 2510- 11733 discard region 12660:18132 - contained in read 26035 9260- 18132 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1080/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1081/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8571:9871 - contained in read 487816 2756- 12033 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1082/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1873:1246 - contained in read 168715 0- 2449 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1083/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 7255:7881 - contained in read 216083 3830- 9680 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1085/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13636:15555 - closest read 35132 ( +20) 13616:15587 ( +32) (contained) saved region 13636:15555 - closest read 30639 ( +4) 13632:15579 ( +24) (contained) saved region 13636:15555 - closest read 202092 ( +3) 13633:22169 ( +6614) (contained) saved region 13636:15555 - closest read 139209 ( +1) 13635:15584 ( +29) (contained) saved region 13636:15555 - closest 5' read 202092 ( +3) 13633:22169 ( +6614) saved region 13636:15555 - closest 3' read 35132 ( +20) 13616:15587 ( +32) search for confused edges: discard region 13636:15555 - no confusion in best edges Annotating repeats in reads for tig 1091/90584. Annotated with 86 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7125:13048 - closest 5' read 394436 ( +19) 7106:13024 ( -24) saved region 7125:13048 - closest 3' read 518262 ( -35) 7160:13827 ( +779) search for confused edges: tig 1091 read 91307 pos 2499-13020 NOT confused by 3' edge to read 230241 - best edge read 518262 len 5860 erate 0.0301 score 5683.61 - alt edge len 682 erate 0.0367 score 656.97 - absdiff 5026.64 percdiff 158.5546 tig 1091 read 91307 pos 2499-13020 NOT confused by 3' edge to read 329373 - best edge read 518262 len 5860 erate 0.0301 score 5683.61 - alt edge len 630 erate 0.0286 score 611.98 - absdiff 5071.63 percdiff 161.1168 tig 1091 read 518262 pos 7160-13827 NOT confused by 5' edge to read 75112 - best edge read 91307 len 5825 erate 0.0301 score 5649.67 - alt edge len 644 erate 0.0296 score 624.94 - absdiff 5024.73 percdiff 160.1608 tig 1091 read 518262 pos 7160-13827 NOT confused by 5' edge to read 95287 - best edge read 91307 len 5825 erate 0.0301 score 5649.67 - alt edge len 883 erate 0.0400 score 847.68 - absdiff 4801.99 percdiff 147.8138 tig 1091 read 518262 pos 7160-13827 NOT confused by 5' edge to read 134983 - best edge read 91307 len 5825 erate 0.0301 score 5649.67 - alt edge len 916 erate 0.0333 score 885.50 - absdiff 4764.17 percdiff 145.8011 tig 1091 read 518262 pos 7160-13827 NOT confused by 5' edge to read 182345 - best edge read 91307 len 5825 erate 0.0301 score 5649.67 - alt edge len 1034 erate 0.0339 score 998.95 - absdiff 4650.72 percdiff 139.9004 tig 1091 read 518262 pos 7160-13827 NOT confused by 5' edge to read 212134 - best edge read 91307 len 5825 erate 0.0301 score 5649.67 - alt edge len 1994 erate 0.0276 score 1938.97 - absdiff 3710.70 percdiff 97.7963 tig 1091 read 518262 pos 7160-13827 NOT confused by 5' edge to read 212135 - best edge read 91307 len 5825 erate 0.0301 score 5649.67 - alt edge len 2060 erate 0.0277 score 2002.94 - absdiff 3646.73 percdiff 95.3069 tig 1091 read 518262 pos 7160-13827 NOT confused by 5' edge to read 440778 - best edge read 91307 len 5825 erate 0.0301 score 5649.67 - alt edge len 2069 erate 0.0392 score 1987.90 - absdiff 3661.77 percdiff 95.8885 discard region 7125:13048 - no confusion in best edges Annotating repeats in reads for tig 1092/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1095/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7165:8241 - contained in read 292255 571- 10462 discard region 19289:20122 - contained in read 394256 18558- 24990 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1099/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 925:3977 - contained in read 195761 0- 7290 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1102/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8848:8079 - contained in read 484467 4295- 9423 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1104/90584. Annotated with 53 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7222:9305 - closest read 190360 ( +3) 7219:13947 ( +4642) (contained) saved region 7222:9305 - closest read 190358 ( +1) 7221:15561 ( +6256) (contained) saved region 7222:9305 - closest read 393106 ( +0) 7222:13235 ( +3930) (contained) saved region 7222:9305 - closest 5' read 190358 ( +1) 7221:15561 ( +6256) saved region 7222:9305 - closest 3' read 190360 ( +3) 7219:13947 ( +4642) search for confused edges: discard region 7222:9305 - no confusion in best edges Annotating repeats in reads for tig 1105/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7518:6653 - contained in read 235764 56- 7356 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1108/90584. Annotated with 123 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1089:16061 - closest 5' read 252959 ( +355) 734:9339 ( -6722) saved region 1089:16061 - closest 3' read 414066 ( -6718) 7807:16061 ( +0) search for confused edges: tig 1108 read 217009 pos 5318-15360 NOT confused by 5' edge to read 30480 - best edge read 414065 len 8249 erate 0.0450 score 7877.80 - alt edge len 3171 erate 0.0416 score 3039.09 - absdiff 4838.71 percdiff 88.6464 tig 1108 read 217009 pos 5318-15360 IS confused by 5' edge to read 131923 - best edge read 414065 len 8249 erate 0.0450 score 7877.80 - alt edge len 6201 erate 0.0368 score 5972.80 - absdiff 1904.99 percdiff 27.5077 tig 1108 read 217009 pos 5318-15360 NOT confused by 5' edge to read 270003 - best edge read 414065 len 8249 erate 0.0450 score 7877.80 - alt edge len 5782 erate 0.0410 score 5544.94 - absdiff 2332.86 percdiff 34.7598 tig 1108 read 217009 pos 5318-15360 NOT confused by 5' edge to read 374027 - best edge read 414065 len 8249 erate 0.0450 score 7877.80 - alt edge len 2132 erate 0.0221 score 2084.88 - absdiff 5792.91 percdiff 116.2923 tig 1108 read 217009 pos 5318-15360 NOT confused by 5' edge to read 374028 - best edge read 414065 len 8249 erate 0.0450 score 7877.80 - alt edge len 2126 erate 0.0222 score 2078.80 - absdiff 5798.99 percdiff 116.4854 tig 1108 read 217009 pos 5318-15360 NOT confused by 5' edge to read 457152 - best edge read 414065 len 8249 erate 0.0450 score 7877.80 - alt edge len 910 erate 0.0209 score 890.98 - absdiff 6986.81 percdiff 159.3567 tig 1108 read 217009 pos 5318-15360 NOT confused by 5' edge to read 457153 - best edge read 414065 len 8249 erate 0.0450 score 7877.80 - alt edge len 891 erate 0.0168 score 876.03 - absdiff 7001.76 percdiff 159.9704 tig 1108 read 414065 pos 7111-16053 NOT confused by 5' edge to read 166593 - best edge read 217009 len 8191 erate 0.0450 score 7822.40 - alt edge len 1931 erate 0.0181 score 1896.05 - absdiff 5926.36 percdiff 121.9609 tig 1108 read 414065 pos 7111-16053 IS confused by 3' edge to read 270003 - best edge read 414066 len 8246 erate 0.0169 score 8106.64 - alt edge len 6590 erate 0.0425 score 6309.93 - absdiff 1796.72 percdiff 24.9257 tig 1108 read 414065 pos 7111-16053 NOT confused by 5' edge to read 457164 - best edge read 217009 len 8191 erate 0.0450 score 7822.40 - alt edge len 4722 erate 0.0354 score 4554.84 - absdiff 3267.56 percdiff 52.7995 saved region 1089:16061 - 2 best edges are potentially confused break tig 1108 into up to 2 pieces: 0 589 unique (length 589) 589 16061 repeat (length 15472) Creating Unitig 90874 Creating Unitig 90875 For tig 1108 unique region 0 589 - 0/ 3 reads repeat/unique - unitig 90874 created. For tig 1108 repeat region 589 16061 - 51/ 0 reads repeat/unique - unitig 90875 created. Annotating repeats in reads for tig 1109/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 406:5865 - closest 5' read 208842 ( +376) 30:4348 ( -1517) saved region 406:5865 - closest 3' read 340446 ( -1003) 1409:9419 ( +3554) saved region 19715:20952 - closest read 295692 ( +0) 19715:25519 ( +4567) (contained) saved region 19715:20952 - closest 5' read 295692 ( +0) 19715:25519 ( +4567) saved region 19715:20952 - closest 3' read 295692 ( +0) 19715:25519 ( +4567) search for confused edges: discard region 406:5865 - no confusion in best edges discard region 19715:20952 - no confusion in best edges Annotating repeats in reads for tig 1110/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 0:1079 - contained in read 209901 0- 5356 discard region 1889:2875 - contained in read 209901 0- 5356 discard region 4049:6299 - contained in read 458464 2789- 12143 discard region 6459:8750 - contained in read 458464 2789- 12143 discard region 11207:12143 - contained in read 458464 2789- 12143 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1113/90584. Annotated with 72 overlaps. Scan reads to discard spanned repeats. discard region 6025:8636 - contained in read 213210 7- 8636 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1116/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 8435:12962 - contained in read 143081 6796- 13786 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1117/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6425 - closest read 188768 ( +0) 0:6918 ( +493) (contained) saved region 0:6425 - closest 5' read 188768 ( +0) 0:6918 ( +493) saved region 0:6425 - closest 3' read 188768 ( +0) 0:6918 ( +493) search for confused edges: discard region 0:6425 - no confusion in best edges Annotating repeats in reads for tig 1122/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7458:10339 - closest read 39397 ( +2612) 4846:10371 ( +32) (contained) saved region 7458:10339 - closest read 39398 ( +2594) 4864:10358 ( +19) (contained) saved region 7458:10339 - closest read 351773 ( +2329) 5129:10343 ( +4) (contained) saved region 7458:10339 - closest read 103964 ( +10) 7448:10341 ( +2) (contained) saved region 7458:10339 - closest 5' read 39397 ( +2612) 4846:10371 ( +32) saved region 7458:10339 - closest 3' read 39397 ( +2612) 4846:10371 ( +32) search for confused edges: discard region 7458:10339 - no confusion in best edges Annotating repeats in reads for tig 1125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1127/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 4768:6286 - contained in read 29338 908- 7246 discard region 6632:7248 - contained in read 350313 997- 8435 discard region 7997:8783 - contained in read 104144 4768- 8783 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1128/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 8603:13639 - contained in read 217781 5546- 13639 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1129/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11982:13678 - contained in read 502212 6918- 14775 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1131/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:2750 - contained in read 416999 0- 5121 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1133/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13647:14226 - closest read 118119 ( +5478) 8169:14236 ( +10) (contained) saved region 13647:14226 - closest read 118121 ( +5435) 8212:14226 ( +0) (contained) saved region 13647:14226 - closest read 118124 ( +3022) 10625:14227 ( +1) (contained) saved region 13647:14226 - closest 5' read 118119 ( +5478) 8169:14236 ( +10) saved region 13647:14226 - closest 3' read 118119 ( +5478) 8169:14236 ( +10) search for confused edges: discard region 13647:14226 - no confusion in best edges Annotating repeats in reads for tig 1134/90584. Annotated with 111 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6784:25267 - closest 5' read 51354 ( +4825) 1959:9941 (-15326) saved region 6784:25267 - closest 3' read 457164 (-11699) 18483:25267 ( +0) search for confused edges: tig 1134 read 424497 pos 6786-14241 IS confused by 3' edge to read 214202 - best edge read 51354 len 3168 erate 0.0269 score 3082.78 - alt edge len 2125 erate 0.0387 score 2042.76 - absdiff 1040.02 percdiff 40.5818 tig 1134 read 163547 pos 6791-14224 NOT confused by 3' edge to read 214201 - best edge read 424497 len 7395 erate 0.0410 score 7091.80 - alt edge len 2155 erate 0.0298 score 2090.78 - absdiff 5001.02 percdiff 108.9241 tig 1134 read 163547 pos 6791-14224 NOT confused by 3' edge to read 214202 - best edge read 424497 len 7395 erate 0.0410 score 7091.80 - alt edge len 2138 erate 0.0274 score 2079.42 - absdiff 5012.39 percdiff 109.3068 tig 1134 read 457153 pos 6852-16113 NOT confused by 3' edge to read 214201 - best edge read 163547 len 7399 erate 0.0361 score 7131.90 - alt edge len 2092 erate 0.0306 score 2027.98 - absdiff 5103.91 percdiff 111.4406 tig 1134 read 457153 pos 6852-16113 NOT confused by 3' edge to read 214202 - best edge read 163547 len 7399 erate 0.0361 score 7131.90 - alt edge len 2075 erate 0.0271 score 2018.77 - absdiff 5113.13 percdiff 111.7543 tig 1134 read 457153 pos 6852-16113 NOT confused by 5' edge to read 217009 - best edge read 457152 len 8753 erate 0.0198 score 8579.69 - alt edge len 901 erate 0.0168 score 885.86 - absdiff 7693.83 percdiff 162.5648 tig 1134 read 457152 pos 7360-16114 NOT confused by 5' edge to read 214201 - best edge read 457153 len 8735 erate 0.0198 score 8562.05 - alt edge len 1579 erate 0.0394 score 1516.79 - absdiff 7045.26 percdiff 139.8031 tig 1134 read 457152 pos 7360-16114 NOT confused by 5' edge to read 214202 - best edge read 457153 len 8735 erate 0.0198 score 8562.05 - alt edge len 1562 erate 0.0353 score 1506.86 - absdiff 7055.19 percdiff 140.1380 tig 1134 read 457152 pos 7360-16114 IS confused by 3' edge to read 217009 - best edge read 229963 len 1445 erate 0.0281 score 1404.40 - alt edge len 922 erate 0.0209 score 902.73 - absdiff 501.67 percdiff 43.4883 tig 1134 read 229963 pos 14669-21073 NOT confused by 3' edge to read 235642 - best edge read 229966 len 6263 erate 0.0171 score 6155.90 - alt edge len 568 erate 0.0317 score 549.99 - absdiff 5605.91 percdiff 167.1934 tig 1134 read 229966 pos 14810-21088 IS confused by 5' edge to read 235642 - best edge read 457164 len 2605 erate 0.0376 score 2507.05 - alt edge len 567 erate 0.0423 score 543.02 - absdiff 1964.04 percdiff 128.7864 saved region 6784:25267 - 3 best edges are potentially confused break tig 1134 into up to 2 pieces: 0 6284 unique (length 6284) 6284 25267 repeat (length 18983) Creating Unitig 90876 Creating Unitig 90877 For tig 1134 unique region 0 6284 - 0/ 7 reads repeat/unique - unitig 90876 created. For tig 1134 repeat region 6284 25267 - 74/ 0 reads repeat/unique - unitig 90877 created. Annotating repeats in reads for tig 1136/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8462:11540 - closest 5' read 473439 ( +748) 7714:11373 ( -167) saved region 8462:11540 - closest 3' read 395530 ( -1) 8463:15922 ( +4382) search for confused edges: discard region 8462:11540 - no confusion in best edges Annotating repeats in reads for tig 1137/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 14842:12770 - contained in read 52671 9016- 14814 thickest edges to the repeat regions: saved region 2804:9563 - closest 5' read 346634 ( +8) 2796:7604 ( -1959) saved region 2804:9563 - closest 3' read 52671 ( -6212) 9016:14814 ( +5251) search for confused edges: tig 1137 read 346634 pos 2796-7604 IS confused by 3' edge to read 6917 - best edge read 470429 len 4797 erate 0.0148 score 4726.00 - alt edge len 4787 erate 0.0180 score 4700.83 - absdiff 25.17 percdiff 0.5340 tig 1137 read 346634 pos 2796-7604 IS confused by 3' edge to read 325760 - best edge read 470429 len 4797 erate 0.0148 score 4726.00 - alt edge len 3350 erate 0.0153 score 3298.74 - absdiff 1427.26 percdiff 35.5714 tig 1137 read 470429 pos 2807-9538 NOT confused by 5' edge to read 172441 - best edge read 346634 len 4797 erate 0.0148 score 4726.00 - alt edge len 655 erate 0.0355 score 631.75 - absdiff 4094.26 percdiff 152.8349 tig 1137 read 470429 pos 2807-9538 NOT confused by 5' edge to read 172442 - best edge read 346634 len 4797 erate 0.0148 score 4726.00 - alt edge len 622 erate 0.0373 score 598.80 - absdiff 4127.20 percdiff 155.0181 saved region 2804:9563 - 2 best edges are potentially confused break tig 1137 into up to 3 pieces: 0 2304 unique (length 2304) 2304 10063 repeat (length 7759) 10063 17603 unique (length 7540) Creating Unitig 90878 Creating Unitig 90879 Creating Unitig 90880 For tig 1137 unique region 0 2304 - 0/ 3 reads repeat/unique - unitig 90878 created. For tig 1137 repeat region 2304 10063 - 8/ 0 reads repeat/unique - unitig 90879 created. For tig 1137 unique region 10063 17603 - 0/ 17 reads repeat/unique - unitig 90880 created. Annotating repeats in reads for tig 1140/90584. Annotated with 126 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3661:13921 - closest 5' read 429827 ( +970) 2691:9465 ( -4456) saved region 3661:13921 - closest 3' read 122107 ( -4218) 7879:17285 ( +3364) search for confused edges: tig 1140 read 429827 pos 2691-9465 NOT confused by 3' edge to read 135909 - best edge read 361506 len 5124 erate 0.0397 score 4920.58 - alt edge len 1114 erate 0.0323 score 1078.02 - absdiff 3842.56 percdiff 128.1153 tig 1140 read 429827 pos 2691-9465 NOT confused by 3' edge to read 253578 - best edge read 361506 len 5124 erate 0.0397 score 4920.58 - alt edge len 1280 erate 0.0164 score 1259.01 - absdiff 3661.57 percdiff 118.5053 tig 1140 read 361506 pos 4341-10984 NOT confused by 3' edge to read 47143 - best edge read 361507 len 6602 erate 0.0114 score 6526.74 - alt edge len 2109 erate 0.0308 score 2044.04 - absdiff 4482.69 percdiff 104.6041 tig 1140 read 361506 pos 4341-10984 NOT confused by 3' edge to read 47146 - best edge read 361507 len 6602 erate 0.0114 score 6526.74 - alt edge len 1998 erate 0.0257 score 1946.65 - absdiff 4580.09 percdiff 108.1052 tig 1140 read 361506 pos 4341-10984 NOT confused by 3' edge to read 135909 - best edge read 361507 len 6602 erate 0.0114 score 6526.74 - alt edge len 2744 erate 0.0321 score 2655.92 - absdiff 3870.82 percdiff 84.3072 tig 1140 read 361506 pos 4341-10984 NOT confused by 3' edge to read 235395 - best edge read 361507 len 6602 erate 0.0114 score 6526.74 - alt edge len 1466 erate 0.0366 score 1412.34 - absdiff 5114.39 percdiff 128.8409 tig 1140 read 361506 pos 4341-10984 NOT confused by 3' edge to read 253578 - best edge read 361507 len 6602 erate 0.0114 score 6526.74 - alt edge len 2911 erate 0.0231 score 2843.76 - absdiff 3682.98 percdiff 78.6081 tig 1140 read 361506 pos 4341-10984 NOT confused by 3' edge to read 321161 - best edge read 361507 len 6602 erate 0.0114 score 6526.74 - alt edge len 2935 erate 0.0340 score 2835.21 - absdiff 3691.53 percdiff 78.8624 tig 1140 read 361506 pos 4341-10984 NOT confused by 3' edge to read 321162 - best edge read 361507 len 6602 erate 0.0114 score 6526.74 - alt edge len 2933 erate 0.0338 score 2833.86 - absdiff 3692.87 percdiff 78.9025 tig 1140 read 361507 pos 4382-10988 IS confused by 5' edge to read 47143 - best edge read 122107 len 3109 erate 0.0209 score 3044.02 - alt edge len 2114 erate 0.0317 score 2046.99 - absdiff 997.04 percdiff 39.1685 tig 1140 read 361507 pos 4382-10988 IS confused by 5' edge to read 47146 - best edge read 122107 len 3109 erate 0.0209 score 3044.02 - alt edge len 2004 erate 0.0261 score 1951.70 - absdiff 1092.33 percdiff 43.7305 tig 1140 read 361507 pos 4382-10988 IS confused by 5' edge to read 135909 - best edge read 122107 len 3109 erate 0.0209 score 3044.02 - alt edge len 2751 erate 0.0331 score 2659.94 - absdiff 384.08 percdiff 13.4671 tig 1140 read 361507 pos 4382-10988 IS confused by 5' edge to read 253578 - best edge read 122107 len 3109 erate 0.0209 score 3044.02 - alt edge len 2918 erate 0.0237 score 2848.84 - absdiff 195.18 percdiff 6.6242 tig 1140 read 361507 pos 4382-10988 IS confused by 5' edge to read 321161 - best edge read 122107 len 3109 erate 0.0209 score 3044.02 - alt edge len 2949 erate 0.0360 score 2842.84 - absdiff 201.19 percdiff 6.8351 tig 1140 read 361507 pos 4382-10988 IS confused by 5' edge to read 321162 - best edge read 122107 len 3109 erate 0.0209 score 3044.02 - alt edge len 2945 erate 0.0364 score 2837.80 - absdiff 206.22 percdiff 7.0121 saved region 3661:13921 - 6 best edges are potentially confused break tig 1140 into up to 3 pieces: 0 3161 unique (length 3161) 3161 14421 repeat (length 11260) 14421 19542 unique (length 5121) Creating Unitig 90881 Creating Unitig 90882 Creating Unitig 90883 For tig 1140 unique region 0 3161 - 0/ 8 reads repeat/unique - unitig 90881 created. For tig 1140 repeat region 3161 14421 - 58/ 0 reads repeat/unique - unitig 90882 created. For tig 1140 unique region 14421 19542 - 0/ 10 reads repeat/unique - unitig 90883 created. Annotating repeats in reads for tig 1141/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 997:2068 - contained in read 249777 0- 3081 discard region 12271:12785 - contained in read 468029 7179- 15110 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1143/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 3898:4793 - contained in read 252571 0- 9155 discard region 8091:12997 - contained in read 438022 6277- 13887 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1148/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1153/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4016:7973 - closest read 450339 ( +1987) 2029:7981 ( +8) (contained) saved region 4016:7973 - closest read 421934 ( +1402) 2614:7992 ( +19) (contained) saved region 4016:7973 - closest read 421935 ( +1402) 2614:7988 ( +15) (contained) saved region 4016:7973 - closest read 50960 ( +323) 3693:10303 ( +2330) (contained) saved region 4016:7973 - closest 5' read 50960 ( +323) 3693:10303 ( +2330) saved region 4016:7973 - closest 3' read 450339 ( +1987) 2029:7981 ( +8) search for confused edges: discard region 4016:7973 - no confusion in best edges Annotating repeats in reads for tig 1156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1157/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 718:5222 - contained in read 482202 147- 6773 discard region 6770:9243 - contained in read 456969 4726- 12943 discard region 13138:15082 - contained in read 456968 4959- 17131 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1160/90584. Annotated with 62 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 948:10339 - closest 5' read 279233 ( +886) 62:6136 ( -4203) saved region 948:10339 - closest 3' read 111785 ( -1976) 2924:10450 ( +111) search for confused edges: tig 1160 read 279231 pos 0-6091 NOT confused by 3' edge to read 132648 - best edge read 374719 len 5014 erate 0.0429 score 4798.90 - alt edge len 860 erate 0.0140 score 847.96 - absdiff 3950.94 percdiff 139.9340 tig 1160 read 279231 pos 0-6091 IS confused by 3' edge to read 188938 - best edge read 374719 len 5014 erate 0.0429 score 4798.90 - alt edge len 4741 erate 0.0211 score 4640.96 - absdiff 157.93 percdiff 3.3461 tig 1160 read 374719 pos 1077-6744 NOT confused by 5' edge to read 132648 - best edge read 193580 len 5404 erate 0.0213 score 5288.89 - alt edge len 1440 erate 0.0160 score 1416.96 - absdiff 3871.93 percdiff 115.4792 tig 1160 read 193580 pos 1340-9349 NOT confused by 5' edge to read 153913 - best edge read 111785 len 6425 erate 0.0167 score 6317.70 - alt edge len 1559 erate 0.0296 score 1512.85 - absdiff 4804.85 percdiff 122.7205 tig 1160 read 193580 pos 1340-9349 NOT confused by 5' edge to read 430650 - best edge read 111785 len 6425 erate 0.0167 score 6317.70 - alt edge len 1405 erate 0.0257 score 1368.89 - absdiff 4948.81 percdiff 128.7647 tig 1160 read 193580 pos 1340-9349 NOT confused by 5' edge to read 507055 - best edge read 111785 len 6425 erate 0.0167 score 6317.70 - alt edge len 1930 erate 0.0317 score 1868.82 - absdiff 4448.88 percdiff 108.6880 tig 1160 read 111785 pos 2924-10450 NOT confused by 3' edge to read 124904 - best edge read 193580 len 6444 erate 0.0167 score 6336.39 - alt edge len 2470 erate 0.0121 score 2440.11 - absdiff 3896.27 percdiff 88.7888 tig 1160 read 111785 pos 2924-10450 IS confused by 3' edge to read 132648 - best edge read 193580 len 6444 erate 0.0167 score 6336.39 - alt edge len 5776 erate 0.0206 score 5657.01 - absdiff 679.37 percdiff 11.3291 tig 1160 read 111785 pos 2924-10450 NOT confused by 3' edge to read 430650 - best edge read 193580 len 6444 erate 0.0167 score 6336.39 - alt edge len 1288 erate 0.0218 score 1259.92 - absdiff 5076.46 percdiff 133.6561 tig 1160 read 111785 pos 2924-10450 NOT confused by 3' edge to read 507055 - best edge read 193580 len 6444 erate 0.0167 score 6336.39 - alt edge len 4221 erate 0.0135 score 4164.02 - absdiff 2172.37 percdiff 41.3769 saved region 948:10339 - 2 best edges are potentially confused break tig 1160 into up to 2 pieces: 0 448 unique (length 448) 448 10450 repeat (length 10002) Creating Unitig 90884 Creating Unitig 90885 For tig 1160 unique region 0 448 - 0/ 5 reads repeat/unique - unitig 90884 created. For tig 1160 repeat region 448 10450 - 20/ 0 reads repeat/unique - unitig 90885 created. Annotating repeats in reads for tig 1161/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5226:7392 - closest 5' read 279668 ( +5225) 1:6132 ( -1260) saved region 5226:7392 - closest 3' read 299429 ( -22) 5248:8564 ( +1172) search for confused edges: discard region 5226:7392 - no confusion in best edges Annotating repeats in reads for tig 1162/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 17262:16720 - contained in read 240968 8458- 17237 thickest edges to the repeat regions: saved region 38:10633 - closest 5' read 320057 ( +38) 0:6200 ( -4433) saved region 38:10633 - closest 3' read 466715 ( -5553) 5591:11179 ( +546) search for confused edges: tig 1162 read 336293 pos 5564-10572 IS confused by 3' edge to read 455925 - best edge read 320057 len 636 erate 0.0346 score 613.99 - alt edge len 501 erate 0.0360 score 482.96 - absdiff 131.03 percdiff 23.8898 tig 1162 read 336293 pos 5564-10572 IS confused by 5' edge to read 472486 - best edge read 466715 len 4983 erate 0.0280 score 4843.48 - alt edge len 3492 erate 0.0340 score 3373.27 - absdiff 1470.20 percdiff 35.7855 tig 1162 read 336293 pos 5564-10572 IS confused by 5' edge to read 472489 - best edge read 466715 len 4983 erate 0.0280 score 4843.48 - alt edge len 3490 erate 0.0355 score 3366.11 - absdiff 1477.37 percdiff 35.9914 tig 1162 read 466715 pos 5591-11179 IS confused by 5' edge to read 399805 - best edge read 336293 len 4981 erate 0.0280 score 4841.53 - alt edge len 3620 erate 0.0448 score 3457.82 - absdiff 1383.71 percdiff 33.3449 saved region 38:10633 - 4 best edges are potentially confused break tig 1162 into up to 2 pieces: 0 11133 repeat (length 11133) 11133 18882 unique (length 7749) Creating Unitig 90886 Creating Unitig 90887 For tig 1162 repeat region 0 11133 - 40/ 0 reads repeat/unique - unitig 90886 created. For tig 1162 unique region 11133 18882 - 0/ 14 reads repeat/unique - unitig 90887 created. Annotating repeats in reads for tig 1163/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13769:19009 - closest 5' read 346531 ( +2268) 11501:18944 ( -65) saved region 13769:19009 - closest 3' read 22245 ( -4) 13773:19123 ( +114) search for confused edges: tig 1163 read 269372 pos 14554-21382 NOT confused by 3' edge to read 260125 - best edge read 346531 len 4390 erate 0.0308 score 4254.79 - alt edge len 1486 erate 0.0330 score 1436.96 - absdiff 2817.83 percdiff 99.0144 tig 1163 read 269372 pos 14554-21382 IS confused by 3' edge to read 492667 - best edge read 346531 len 4390 erate 0.0308 score 4254.79 - alt edge len 3235 erate 0.0406 score 3103.66 - absdiff 1151.13 percdiff 31.2873 saved region 13769:19009 - 1 best edges are potentially confused break tig 1163 into up to 3 pieces: 0 13269 unique (length 13269) 13269 19509 repeat (length 6240) 19509 22921 unique (length 3412) Creating Unitig 90888 Creating Unitig 90889 Creating Unitig 90890 For tig 1163 unique region 0 13269 - 0/ 33 reads repeat/unique - unitig 90888 created. For tig 1163 repeat region 13269 19509 - 36/ 0 reads repeat/unique - unitig 90889 created. For tig 1163 unique region 19509 22921 - 0/ 10 reads repeat/unique - unitig 90890 created. Annotating repeats in reads for tig 1165/90584. Annotated with 97 overlaps. Scan reads to discard spanned repeats. discard region 2062:3360 - contained in read 281897 0- 9108 discard region 3360:7409 - contained in read 281897 0- 9108 discard region 9074:12555 - contained in read 200354 2117- 17696 thickest edges to the repeat regions: saved region 19441:23340 - closest read 157122 ( +335) 19106:23340 ( +0) (contained) saved region 19441:23340 - closest 5' read 157122 ( +335) 19106:23340 ( +0) saved region 19441:23340 - closest 3' read 157122 ( +335) 19106:23340 ( +0) search for confused edges: discard region 19441:23340 - no confusion in best edges Annotating repeats in reads for tig 1169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1177/90584. Annotated with 558 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1769:12916 - closest 5' read 32831 ( +1769) 0:6486 ( -6430) saved region 1769:12916 - closest 3' read 530014 ( -1896) 3665:12916 ( +0) search for confused edges: tig 1177 read 291815 pos 3645-9064 IS confused by 5' edge to read 56587 - best edge read 32831 len 2841 erate 0.0106 score 2810.89 - alt edge len 1938 erate 0.0275 score 1884.71 - absdiff 926.18 percdiff 39.4489 tig 1177 read 291815 pos 3645-9064 IS confused by 5' edge to read 104923 - best edge read 32831 len 2841 erate 0.0106 score 2810.89 - alt edge len 2208 erate 0.0299 score 2141.98 - absdiff 668.90 percdiff 27.0108 tig 1177 read 291815 pos 3645-9064 IS confused by 5' edge to read 104924 - best edge read 32831 len 2841 erate 0.0106 score 2810.89 - alt edge len 2157 erate 0.0357 score 2080.00 - absdiff 730.89 percdiff 29.8879 tig 1177 read 291815 pos 3645-9064 IS confused by 5' edge to read 222667 - best edge read 32831 len 2841 erate 0.0106 score 2810.89 - alt edge len 1963 erate 0.0296 score 1904.90 - absdiff 905.99 percdiff 38.4238 tig 1177 read 291816 pos 3663-9429 NOT confused by 5' edge to read 22254 - best edge read 530014 len 5764 erate 0.0268 score 5609.52 - alt edge len 898 erate 0.0268 score 873.93 - absdiff 4735.59 percdiff 146.0823 tig 1177 read 291816 pos 3663-9429 NOT confused by 5' edge to read 22256 - best edge read 530014 len 5764 erate 0.0268 score 5609.52 - alt edge len 933 erate 0.0323 score 902.86 - absdiff 4706.66 percdiff 144.5448 tig 1177 read 291816 pos 3663-9429 NOT confused by 5' edge to read 47413 - best edge read 530014 len 5764 erate 0.0268 score 5609.52 - alt edge len 1062 erate 0.0330 score 1026.95 - absdiff 4582.57 percdiff 138.1025 tig 1177 read 291816 pos 3663-9429 NOT confused by 5' edge to read 47415 - best edge read 530014 len 5764 erate 0.0268 score 5609.52 - alt edge len 1069 erate 0.0319 score 1034.90 - absdiff 4574.63 percdiff 137.6982 tig 1177 read 291816 pos 3663-9429 NOT confused by 3' edge to read 56587 - best edge read 291815 len 5399 erate 0.0147 score 5319.63 - alt edge len 1925 erate 0.0256 score 1875.72 - absdiff 3443.91 percdiff 95.7261 tig 1177 read 291816 pos 3663-9429 NOT confused by 3' edge to read 104923 - best edge read 291815 len 5399 erate 0.0147 score 5319.63 - alt edge len 2196 erate 0.0273 score 2136.05 - absdiff 3183.59 percdiff 85.4002 tig 1177 read 291816 pos 3663-9429 NOT confused by 3' edge to read 104924 - best edge read 291815 len 5399 erate 0.0147 score 5319.63 - alt edge len 2145 erate 0.0331 score 2074.00 - absdiff 3245.63 percdiff 87.7954 tig 1177 read 291816 pos 3663-9429 NOT confused by 3' edge to read 222667 - best edge read 291815 len 5399 erate 0.0147 score 5319.63 - alt edge len 1950 erate 0.0292 score 1893.06 - absdiff 3426.57 percdiff 95.0151 tig 1177 read 291816 pos 3663-9429 NOT confused by 5' edge to read 341312 - best edge read 530014 len 5764 erate 0.0268 score 5609.52 - alt edge len 1253 erate 0.0313 score 1213.78 - absdiff 4395.74 percdiff 128.8450 tig 1177 read 291816 pos 3663-9429 NOT confused by 5' edge to read 508580 - best edge read 530014 len 5764 erate 0.0268 score 5609.52 - alt edge len 632 erate 0.0350 score 609.88 - absdiff 4999.64 percdiff 160.7757 tig 1177 read 530014 pos 3665-12916 NOT confused by 3' edge to read 56587 - best edge read 291816 len 5801 erate 0.0268 score 5645.53 - alt edge len 1935 erate 0.0429 score 1851.99 - absdiff 3793.54 percdiff 101.1946 tig 1177 read 530014 pos 3665-12916 NOT confused by 3' edge to read 104923 - best edge read 291816 len 5801 erate 0.0268 score 5645.53 - alt edge len 2209 erate 0.0435 score 2112.91 - absdiff 3532.62 percdiff 91.0653 saved region 1769:12916 - 4 best edges are potentially confused break tig 1177 into up to 2 pieces: 0 1269 unique (length 1269) 1269 12916 repeat (length 11647) Creating Unitig 90891 Creating Unitig 90892 For tig 1177 unique region 0 1269 - 0/ 1 reads repeat/unique - unitig 90891 created. For tig 1177 repeat region 1269 12916 - 64/ 0 reads repeat/unique - unitig 90892 created. Annotating repeats in reads for tig 1187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1188/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1191/90584. Annotated with 58 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3783:8822 - closest 5' read 474956 ( +3783) 0:6243 ( -2579) saved region 3783:8822 - closest 3' read 493064 ( -1115) 4898:14179 ( +5357) search for confused edges: discard region 3783:8822 - no confusion in best edges Annotating repeats in reads for tig 1192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1193/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4664:8397 - closest 5' read 496422 ( +105) 4559:8384 ( -13) saved region 4664:8397 - closest 3' read 373419 ( -2830) 7494:13424 ( +5027) search for confused edges: discard region 4664:8397 - no confusion in best edges Annotating repeats in reads for tig 1194/90584. Annotated with 84 overlaps. Scan reads to discard spanned repeats. discard region 0:3111 - contained in read 308190 0- 8206 discard region 18301:19028 - contained in read 477647 7869- 23833 thickest edges to the repeat regions: saved region 3958:14273 - closest 5' read 308190 ( +3958) 0:8206 ( -6067) saved region 3958:14273 - closest 3' read 513687 ( -1839) 5797:19438 ( +5165) search for confused edges: discard region 3958:14273 - no confusion in best edges Annotating repeats in reads for tig 1195/90584. Annotated with 77 overlaps. Scan reads to discard spanned repeats. discard region 0:2799 - contained in read 162477 0- 7812 discard region 4303:6253 - contained in read 162477 0- 7812 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1196/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1198/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 0:4693 - contained in read 259466 0- 7047 discard region 4707:5982 - contained in read 259466 0- 7047 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1202/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. discard region 0:1185 - contained in read 315239 0- 5607 discard region 1374:4118 - contained in read 315239 0- 5607 discard region 5297:4585 - contained in read 315239 0- 5607 thickest edges to the repeat regions: saved region 5874:9123 - closest read 435955 ( +309) 5565:12350 ( +3227) (contained) saved region 5874:9123 - closest 5' read 435955 ( +309) 5565:12350 ( +3227) saved region 5874:9123 - closest 3' read 435955 ( +309) 5565:12350 ( +3227) saved region 9779:12549 - closest 5' read 80967 ( +3627) 6152:12530 ( -19) saved region 9779:12549 - closest 3' read 407139 ( -1482) 11261:18207 ( +5658) saved region 17266:18201 - closest read 407139 ( +6005) 11261:18207 ( +6) (contained) saved region 17266:18201 - closest read 125591 ( +404) 16862:20252 ( +2051) (contained) saved region 17266:18201 - closest read 177814 ( +0) 17266:18291 ( +90) (contained) saved region 17266:18201 - closest 5' read 125591 ( +404) 16862:20252 ( +2051) saved region 17266:18201 - closest 3' read 407139 ( +6005) 11261:18207 ( +6) search for confused edges: tig 1202 read 80970 pos 1915-8328 IS confused by 3' edge to read 407139 - best edge read 80969 len 2206 erate 0.0132 score 2176.88 - alt edge len 1262 erate 0.0325 score 1220.99 - absdiff 955.90 percdiff 56.2645 saved region 5874:9123 - 1 best edges are potentially confused discard region 9779:12549 - no confusion in best edges discard region 17266:18201 - no confusion in best edges break tig 1202 into up to 3 pieces: 0 5374 unique (length 5374) 5374 9623 repeat (length 4249) 9623 20252 unique (length 10629) Creating Unitig 90893 Creating Unitig 90894 Creating Unitig 90895 For tig 1202 unique region 0 5374 - 0/ 13 reads repeat/unique - unitig 90893 created. For tig 1202 repeat region 5374 9623 - 2/ 0 reads repeat/unique - unitig 90895 created. For tig 1202 unique region 9623 20252 - 0/ 8 reads repeat/unique - unitig 90894 created. Annotating repeats in reads for tig 1206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1212/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1213/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1216/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4807:11976 - closest 5' read 498024 ( +265) 4542:10986 ( -990) saved region 4807:11976 - closest 3' read 489342 ( -535) 5342:12394 ( +418) search for confused edges: discard region 4807:11976 - no confusion in best edges Annotating repeats in reads for tig 1223/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5130:7592 - contained in read 337099 4230- 7592 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1226/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8734:6675 - contained in read 497200 0- 13398 thickest edges to the repeat regions: saved region 11184:15891 - closest read 261278 ( +513) 10671:16318 ( +427) (contained) saved region 11184:15891 - closest read 319074 ( +477) 10707:15899 ( +8) (contained) saved region 11184:15891 - closest read 130657 ( +202) 10982:19814 ( +3923) (contained) saved region 11184:15891 - closest read 89407 ( +177) 11007:17241 ( +1350) (contained) saved region 11184:15891 - closest read 130658 ( +20) 11164:19697 ( +3806) (contained) saved region 11184:15891 - closest 5' read 130657 ( +202) 10982:19814 ( +3923) saved region 11184:15891 - closest 3' read 261278 ( +513) 10671:16318 ( +427) search for confused edges: discard region 11184:15891 - no confusion in best edges Annotating repeats in reads for tig 1232/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1235/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1241/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7770:6966 - contained in read 476823 0- 7769 discard region 9302:7205 - contained in read 476823 0- 7769 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1243/90584. Annotated with 178 overlaps. Scan reads to discard spanned repeats. discard region 0:1683 - contained in read 499659 0- 7228 discard region 8276:10155 - contained in read 220584 5954- 11883 discard region 10407:11886 - contained in read 359992 6813- 13544 thickest edges to the repeat regions: saved region 1821:8021 - closest 5' read 499659 ( +1821) 0:7228 ( -793) saved region 1821:8021 - closest 3' read 359994 ( -707) 2528:9257 ( +1236) search for confused edges: tig 1243 read 499659 pos 0-7228 NOT confused by 5' edge to read 313746 - best edge read 359994 len 4639 erate 0.0375 score 4465.04 - alt edge len 1381 erate 0.0363 score 1330.87 - absdiff 3134.17 percdiff 108.1511 tig 1243 read 499659 pos 0-7228 NOT confused by 5' edge to read 395007 - best edge read 359994 len 4639 erate 0.0375 score 4465.04 - alt edge len 1325 erate 0.0401 score 1271.87 - absdiff 3193.17 percdiff 111.3203 tig 1243 read 359994 pos 2528-9257 NOT confused by 5' edge to read 155468 - best edge read 499659 len 4700 erate 0.0375 score 4523.75 - alt edge len 697 erate 0.0330 score 674.00 - absdiff 3849.75 percdiff 148.1315 tig 1243 read 359994 pos 2528-9257 NOT confused by 5' edge to read 381096 - best edge read 499659 len 4700 erate 0.0375 score 4523.75 - alt edge len 1142 erate 0.0359 score 1101.00 - absdiff 3422.75 percdiff 121.7031 discard region 1821:8021 - no confusion in best edges Annotating repeats in reads for tig 1244/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3374:5841 - contained in read 157678 0- 7511 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1245/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1248/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1467:0 - contained in read 61137 0- 12757 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1255/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 3275:9405 - contained in read 167560 236- 10541 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1262/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1264/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 2859:5820 - contained in read 501464 83- 5823 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1266/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4488:5967 - contained in read 41038 700- 5967 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1271/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 0:524 - contained in read 397730 0- 5749 thickest edges to the repeat regions: saved region 5953:7169 - closest 5' read 397733 ( +5837) 116:6691 ( -478) saved region 5953:7169 - closest 3' read 361006 ( -7) 5960:10549 ( +3380) search for confused edges: tig 1271 read 397731 pos 6-6560 IS confused by 5' edge to read 494135 - best edge read 361006 len 600 erate 0.0136 score 591.84 - alt edge len 600 erate 0.0153 score 590.82 - absdiff 1.02 percdiff 0.1725 saved region 5953:7169 - 1 best edges are potentially confused break tig 1271 into up to 3 pieces: 0 5453 unique (length 5453) 5453 7669 repeat (length 2216) 7669 10801 unique (length 3132) Creating Unitig 90896 Creating Unitig 90897 Creating Unitig 90898 For tig 1271 unique region 0 5453 - 0/ 6 reads repeat/unique - unitig 90896 created. For tig 1271 repeat region 5453 7669 - 1/ 0 reads repeat/unique - unitig 90897 created. For tig 1271 unique region 7669 10801 - 0/ 2 reads repeat/unique - unitig 90898 created. Annotating repeats in reads for tig 1274/90584. Annotated with 160 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 40:9571 - closest 5' read 399850 ( +40) 0:1162 ( -8409) saved region 40:9571 - closest 3' read 200423 ( -3504) 3544:11381 ( +1810) saved region 9607:18484 - closest 5' read 82304 ( +3138) 6469:13010 ( -5474) saved region 9607:18484 - closest 3' read 192032 ( -496) 10103:18508 ( +24) search for confused edges: tig 1274 read 483170 pos 3457-8704 IS confused by 3' edge to read 180046 - best edge read 340838 len 2547 erate 0.0242 score 2485.36 - alt edge len 954 erate 0.0178 score 937.02 - absdiff 1548.34 percdiff 90.4834 tig 1274 read 483170 pos 3457-8704 IS confused by 3' edge to read 180047 - best edge read 340838 len 2547 erate 0.0242 score 2485.36 - alt edge len 830 erate 0.0157 score 816.97 - absdiff 1668.39 percdiff 101.0434 tig 1274 read 200423 pos 3544-11381 NOT confused by 5' edge to read 180046 - best edge read 483170 len 5157 erate 0.0128 score 5090.99 - alt edge len 868 erate 0.0092 score 860.01 - absdiff 4230.98 percdiff 142.1937 tig 1274 read 200423 pos 3544-11381 IS confused by 5' edge to read 180047 - best edge read 483170 len 5157 erate 0.0128 score 5090.99 - alt edge len 5027 erate 0.0136 score 4958.63 - absdiff 132.36 percdiff 2.6341 saved region 40:9571 - 3 best edges are potentially confused discard region 9607:18484 - no confusion in best edges break tig 1274 into up to 2 pieces: 0 10071 repeat (length 10071) 10071 18512 unique (length 8441) Creating Unitig 90899 Creating Unitig 90900 For tig 1274 repeat region 0 10071 - 13/ 0 reads repeat/unique - unitig 90899 created. For tig 1274 unique region 10071 18512 - 0/ 29 reads repeat/unique - unitig 90900 created. Annotating repeats in reads for tig 1275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1278/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6646:11058 - closest 5' read 516764 ( +300) 6346:10761 ( -297) saved region 6646:11058 - closest 3' read 173885 ( -476) 7122:16225 ( +5167) search for confused edges: tig 1278 read 126215 pos 4427-10673 IS confused by 5' edge to read 418475 - best edge read 173885 len 3551 erate 0.0281 score 3451.22 - alt edge len 2414 erate 0.0398 score 2317.92 - absdiff 1133.29 percdiff 39.2881 saved region 6646:11058 - 1 best edges are potentially confused break tig 1278 into up to 3 pieces: 0 6146 unique (length 6146) 6146 11558 repeat (length 5412) 11558 16245 unique (length 4687) Creating Unitig 90901 Creating Unitig 90902 Creating Unitig 90903 For tig 1278 unique region 0 6146 - 0/ 25 reads repeat/unique - unitig 90901 created. For tig 1278 repeat region 6146 11558 - 16/ 0 reads repeat/unique - unitig 90902 created. For tig 1278 unique region 11558 16245 - 0/ 4 reads repeat/unique - unitig 90903 created. Annotating repeats in reads for tig 1280/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1291/90584. Annotated with 140 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9883:14726 - closest 5' read 334400 ( +11) 9872:14715 ( -11) saved region 9883:14726 - closest 3' read 259648 ( -1798) 11681:14776 ( +50) search for confused edges: tig 1291 read 413163 pos 13290-17106 IS confused by 5' edge to read 197393 - best edge read 251282 len 1409 erate 0.0272 score 1370.68 - alt edge len 1402 erate 0.0238 score 1368.63 - absdiff 2.04 percdiff 0.1491 saved region 9883:14726 - 1 best edges are potentially confused break tig 1291 into up to 3 pieces: 0 9383 unique (length 9383) 9383 15226 repeat (length 5843) 15226 20096 unique (length 4870) Creating Unitig 90904 Creating Unitig 90905 Creating Unitig 90906 For tig 1291 unique region 0 9383 - 0/ 12 reads repeat/unique - unitig 90904 created. For tig 1291 repeat region 9383 15226 - 29/ 0 reads repeat/unique - unitig 90905 created. For tig 1291 unique region 15226 20096 - 0/ 7 reads repeat/unique - unitig 90906 created. Annotating repeats in reads for tig 1292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1294/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 4198:8545 - contained in read 428250 2866- 8545 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1295/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 11669:14147 - contained in read 423319 7367- 14147 thickest edges to the repeat regions: saved region 7367:9394 - closest read 423319 ( +0) 7367:14147 ( +4753) (contained) saved region 7367:9394 - closest 5' read 423319 ( +0) 7367:14147 ( +4753) saved region 7367:9394 - closest 3' read 423319 ( +0) 7367:14147 ( +4753) search for confused edges: discard region 7367:9394 - no confusion in best edges Annotating repeats in reads for tig 1300/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3168:4396 - contained in read 419149 0- 5132 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1302/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11154:15753 - closest 5' read 397258 ( +1364) 9790:15696 ( -57) saved region 11154:15753 - closest 3' read 52289 ( -64) 11218:15878 ( +125) search for confused edges: discard region 11154:15753 - no confusion in best edges Annotating repeats in reads for tig 1308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1311/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5139:8029 - closest 5' read 263440 ( +3352) 1787:7988 ( -41) saved region 5139:8029 - closest 3' read 331801 ( -739) 5878:12172 ( +4143) search for confused edges: discard region 5139:8029 - no confusion in best edges Annotating repeats in reads for tig 1322/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2798:6765 - closest read 395065 ( +2262) 536:6947 ( +182) (contained) saved region 2798:6765 - closest read 77495 ( +676) 2122:6960 ( +195) (contained) saved region 2798:6765 - closest 5' read 77495 ( +676) 2122:6960 ( +195) saved region 2798:6765 - closest 3' read 395065 ( +2262) 536:6947 ( +182) search for confused edges: discard region 2798:6765 - no confusion in best edges Annotating repeats in reads for tig 1323/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 12106:13901 - contained in read 415291 7315- 14644 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1327/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:1558 - contained in read 474233 0- 7855 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1331/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1332/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6898:6062 - contained in read 303071 268- 6855 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1336/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 618:2775 - contained in read 453847 0- 4971 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1339/90584. Annotated with 44 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19887:22478 - closest 5' read 167578 ( +3275) 16612:22461 ( -17) saved region 19887:22478 - closest 3' read 339935 ( -1541) 21428:28055 ( +5577) search for confused edges: discard region 19887:22478 - no confusion in best edges Annotating repeats in reads for tig 1344/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6:2882 - contained in read 62709 0- 6229 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1348/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3353:9778 - closest read 371482 ( +285) 3068:9783 ( +5) (contained) saved region 3353:9778 - closest 5' read 371482 ( +285) 3068:9783 ( +5) saved region 3353:9778 - closest 3' read 371482 ( +285) 3068:9783 ( +5) search for confused edges: discard region 3353:9778 - no confusion in best edges Annotating repeats in reads for tig 1364/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 4662:9170 - contained in read 271644 2094- 9170 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1368/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 12544:14650 - contained in read 440790 9067- 14650 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1374/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10743:12327 - closest 5' read 513779 ( +5630) 5113:11894 ( -433) saved region 10743:12327 - closest 3' read 412680 ( -11) 10754:13663 ( +1336) search for confused edges: tig 1374 read 4247 pos 5024-11883 IS confused by 3' edge to read 235518 - best edge read 412680 len 1129 erate 0.0428 score 1080.68 - alt edge len 695 erate 0.0432 score 664.98 - absdiff 415.70 percdiff 47.6271 saved region 10743:12327 - 1 best edges are potentially confused break tig 1374 into up to 3 pieces: 0 10243 unique (length 10243) 10243 12827 repeat (length 2584) 12827 15515 unique (length 2688) Creating Unitig 90907 Creating Unitig 90908 Creating Unitig 90909 For tig 1374 unique region 0 10243 - 0/ 6 reads repeat/unique - unitig 90907 created. For tig 1374 repeat region 10243 12827 - 12/ 0 reads repeat/unique - unitig 90909 created. For tig 1374 unique region 12827 15515 - 0/ 7 reads repeat/unique - unitig 90908 created. Annotating repeats in reads for tig 1376/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8679:7881 - contained in read 476763 2717- 12605 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1381/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1389/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2176:4237 - contained in read 495720 0- 8595 discard region 8037:7361 - contained in read 495720 0- 8595 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1394/90584. Annotated with 84 overlaps. Scan reads to discard spanned repeats. discard region 6012:8551 - contained in read 355909 17- 9222 thickest edges to the repeat regions: saved region 9861:16072 - closest 5' read 382263 ( +2355) 7506:12518 ( -3554) saved region 9861:16072 - closest 3' read 478559 ( -6) 9867:17337 ( +1265) search for confused edges: tig 1394 read 382264 pos 6687-10618 IS confused by 5' edge to read 181735 - best edge read 478559 len 751 erate 0.0190 score 736.73 - alt edge len 745 erate 0.0191 score 730.77 - absdiff 5.96 percdiff 0.8123 saved region 9861:16072 - 1 best edges are potentially confused break tig 1394 into up to 3 pieces: 0 9361 unique (length 9361) 9361 16572 repeat (length 7211) 16572 18406 unique (length 1834) Creating Unitig 90910 Creating Unitig 90911 Creating Unitig 90912 For tig 1394 unique region 0 9361 - 0/ 13 reads repeat/unique - unitig 90910 created. For tig 1394 repeat region 9361 16572 - 13/ 0 reads repeat/unique - unitig 90912 created. For tig 1394 unique region 16572 18406 - 0/ 5 reads repeat/unique - unitig 90911 created. Annotating repeats in reads for tig 1396/90584. Annotated with 595 overlaps. Scan reads to discard spanned repeats. discard region 0:4733 - contained in read 502485 0- 5723 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1397/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2302:6501 - contained in read 207490 67- 8807 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1408/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 14429:17276 - contained in read 212739 7856- 17814 thickest edges to the repeat regions: saved region 5367:11550 - closest read 484936 ( +1) 5366:14079 ( +2529) (contained) saved region 5367:11550 - closest 5' read 484936 ( +1) 5366:14079 ( +2529) saved region 5367:11550 - closest 3' read 484936 ( +1) 5366:14079 ( +2529) search for confused edges: discard region 5367:11550 - no confusion in best edges Annotating repeats in reads for tig 1410/90584. Annotated with 81 overlaps. Scan reads to discard spanned repeats. discard region 12385:17658 - contained in read 36098 7724- 17658 thickest edges to the repeat regions: saved region 3509:5954 - closest read 516060 ( +3509) 0:5971 ( +17) (contained) saved region 3509:5954 - closest 5' read 516060 ( +3509) 0:5971 ( +17) saved region 3509:5954 - closest 3' read 516060 ( +3509) 0:5971 ( +17) search for confused edges: discard region 3509:5954 - no confusion in best edges Annotating repeats in reads for tig 1411/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:3107 - contained in read 218119 0- 5545 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1420/90584. Annotated with 52 overlaps. Scan reads to discard spanned repeats. discard region 0:7426 - contained in read 396499 0- 10761 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1421/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 912:5684 - contained in read 354695 0- 9488 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1427/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 4428:9978 - contained in read 228775 1798- 11272 discard region 10700:11350 - contained in read 199142 7364- 13207 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1429/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 14:1643 - contained in read 216357 0- 4876 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1430/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 10569:11732 - contained in read 405171 4532- 12685 discard region 14796:15495 - contained in read 366680 8820- 15539 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1431/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 4935:6395 - contained in read 380459 3515- 10202 discard region 8527:13000 - contained in read 8561 6016- 13028 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1432/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 622:0 - contained in read 7807 0- 3467 discard region 2003:840 - contained in read 7807 0- 3467 discard region 8871:11186 - contained in read 221783 5866- 16703 thickest edges to the repeat regions: saved region 5665:6270 - closest read 307339 ( +163) 5502:11174 ( +4904) (contained) saved region 5665:6270 - closest 5' read 307339 ( +163) 5502:11174 ( +4904) saved region 5665:6270 - closest 3' read 307339 ( +163) 5502:11174 ( +4904) saved region 17799:26391 - closest 5' read 463898 ( +7037) 10762:19921 ( -6470) saved region 17799:26391 - closest 3' read 488652 ( -2) 17801:27781 ( +1390) search for confused edges: discard region 5665:6270 - no confusion in best edges discard region 17799:26391 - no confusion in best edges Annotating repeats in reads for tig 1433/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 3510:6080 - contained in read 8179 0- 6891 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1435/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1436/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1438/90584. Annotated with 55 overlaps. Scan reads to discard spanned repeats. discard region 6083:8068 - contained in read 64122 139- 8068 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1440/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10803:11791 - contained in read 507360 5988- 12581 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1441/90584. Annotated with 456 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:23886 - closest 5' read 401033 ( +0) 0:9234 (-14652) saved region 0:23886 - closest 3' read 386487 (-14145) 14145:23935 ( +49) search for confused edges: tig 1441 read 401033 pos 0-9234 NOT confused by 5' edge to read 13424 - best edge read 209116 len 8104 erate 0.0133 score 7996.22 - alt edge len 3023 erate 0.0099 score 2993.07 - absdiff 5003.14 percdiff 91.0549 tig 1441 read 401033 pos 0-9234 NOT confused by 5' edge to read 386487 - best edge read 209116 len 8104 erate 0.0133 score 7996.22 - alt edge len 724 erate 0.0292 score 702.86 - absdiff 7293.36 percdiff 167.6812 tig 1441 read 209116 pos 1166-11026 NOT confused by 5' edge to read 13424 - best edge read 485839 len 9114 erate 0.0165 score 8963.62 - alt edge len 2927 erate 0.0144 score 2884.85 - absdiff 6078.77 percdiff 102.6085 tig 1441 read 209116 pos 1166-11026 NOT confused by 3' edge to read 149616 - best edge read 401033 len 8068 erate 0.0133 score 7960.70 - alt edge len 2052 erate 0.0278 score 1994.95 - absdiff 5965.74 percdiff 119.8463 tig 1441 read 209116 pos 1166-11026 NOT confused by 3' edge to read 195442 - best edge read 401033 len 8068 erate 0.0133 score 7960.70 - alt edge len 2138 erate 0.0285 score 2077.07 - absdiff 5883.63 percdiff 117.2299 tig 1441 read 209116 pos 1166-11026 NOT confused by 5' edge to read 386487 - best edge read 485839 len 9114 erate 0.0165 score 8963.62 - alt edge len 4379 erate 0.0334 score 4232.74 - absdiff 4730.88 percdiff 71.6997 tig 1441 read 485839 pos 1864-15508 NOT confused by 3' edge to read 149616 - best edge read 209116 len 9162 erate 0.0165 score 9010.83 - alt edge len 3193 erate 0.0254 score 3111.90 - absdiff 5898.93 percdiff 97.3202 tig 1441 read 485839 pos 1864-15508 NOT confused by 3' edge to read 195442 - best edge read 209116 len 9162 erate 0.0165 score 9010.83 - alt edge len 1408 erate 0.0215 score 1377.73 - absdiff 7633.10 percdiff 146.9521 tig 1441 read 13424 pos 11845-19828 IS confused by 5' edge to read 149616 - best edge read 485839 len 3663 erate 0.0129 score 3615.75 - alt edge len 2609 erate 0.0211 score 2553.95 - absdiff 1061.80 percdiff 34.4197 tig 1441 read 13424 pos 11845-19828 NOT confused by 5' edge to read 195442 - best edge read 485839 len 3663 erate 0.0129 score 3615.75 - alt edge len 820 erate 0.0221 score 801.88 - absdiff 2813.87 percdiff 127.3928 tig 1441 read 13424 pos 11845-19828 IS confused by 5' edge to read 209116 - best edge read 485839 len 3663 erate 0.0129 score 3615.75 - alt edge len 2947 erate 0.0144 score 2904.56 - absdiff 711.18 percdiff 21.8144 tig 1441 read 13424 pos 11845-19828 IS confused by 5' edge to read 401033 - best edge read 485839 len 3663 erate 0.0129 score 3615.75 - alt edge len 3020 erate 0.0099 score 2990.10 - absdiff 625.65 percdiff 18.9422 saved region 0:23886 - 3 best edges are potentially confused Annotating repeats in reads for tig 1442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1443/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 10831:11963 - contained in read 356518 6213- 13173 discard region 11920:12729 - contained in read 356516 7231- 13243 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1450/90584. Annotated with 147 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4225:17977 - closest 5' read 37483 ( +2290) 1935:8762 ( -9215) saved region 4225:17977 - closest 3' read 446542 ( -3160) 7385:18653 ( +676) search for confused edges: tig 1450 read 18148 pos 6912-17581 NOT confused by 5' edge to read 194153 - best edge read 18147 len 8770 erate 0.0091 score 8690.19 - alt edge len 737 erate 0.0258 score 717.99 - absdiff 7972.21 percdiff 169.4740 discard region 4225:17977 - no confusion in best edges Annotating repeats in reads for tig 1451/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1453/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1455/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 6658:10751 - contained in read 462953 5450- 11559 discard region 14204:15443 - contained in read 88572 9813- 17330 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1456/90584. Annotated with 66 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:10352 - closest 5' read 445460 ( +0) 0:5862 ( -4490) saved region 0:10352 - closest 3' read 102030 ( -7187) 7187:10361 ( +9) saved region 14728:18597 - closest read 20995 ( +396) 14332:18676 ( +79) (contained) saved region 14728:18597 - closest 5' read 20995 ( +396) 14332:18676 ( +79) saved region 14728:18597 - closest 3' read 20995 ( +396) 14332:18676 ( +79) search for confused edges: tig 1456 read 407550 pos 5042-10350 IS confused by 5' edge to read 11575 - best edge read 71750 len 2946 erate 0.0260 score 2869.40 - alt edge len 823 erate 0.0372 score 792.38 - absdiff 2077.02 percdiff 113.4429 tig 1456 read 407550 pos 5042-10350 IS confused by 5' edge to read 11576 - best edge read 71750 len 2946 erate 0.0260 score 2869.40 - alt edge len 887 erate 0.0297 score 860.66 - absdiff 2008.75 percdiff 107.7059 tig 1456 read 407550 pos 5042-10350 IS confused by 3' edge to read 243012 - best edge read 445460 len 820 erate 0.0343 score 791.87 - alt edge len 814 erate 0.0357 score 784.94 - absdiff 6.93 percdiff 0.8795 tig 1456 read 71750 pos 7424-15063 IS confused by 3' edge to read 275189 - best edge read 407550 len 2926 erate 0.0260 score 2849.92 - alt edge len 2590 erate 0.0367 score 2494.95 - absdiff 354.98 percdiff 13.2829 tig 1456 read 71750 pos 7424-15063 IS confused by 3' edge to read 275190 - best edge read 407550 len 2926 erate 0.0260 score 2849.92 - alt edge len 2551 erate 0.0400 score 2448.96 - absdiff 400.96 percdiff 15.1339 tig 1456 read 71750 pos 7424-15063 IS confused by 3' edge to read 275191 - best edge read 407550 len 2926 erate 0.0260 score 2849.92 - alt edge len 1606 erate 0.0288 score 1559.75 - absdiff 1290.18 percdiff 58.5158 saved region 0:10352 - 6 best edges are potentially confused discard region 14728:18597 - no confusion in best edges break tig 1456 into up to 2 pieces: 0 10852 repeat (length 10852) 10852 18676 unique (length 7824) Creating Unitig 90913 Creating Unitig 90914 For tig 1456 repeat region 0 10852 - 19/ 0 reads repeat/unique - unitig 90913 created. For tig 1456 unique region 10852 18676 - 0/ 18 reads repeat/unique - unitig 90914 created. Annotating repeats in reads for tig 1457/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1460/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1461/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 7:5027 - contained in read 218252 0- 6581 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1464/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 16:1441 - contained in read 34644 0- 6165 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1465/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1468/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5510:4565 - contained in read 405645 0- 6525 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1472/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2788:4000 - contained in read 39751 0- 5775 discard region 4572:5777 - contained in read 39750 21- 5777 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1475/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 8758:12955 - contained in read 273926 7261- 12955 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1476/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10354:4959 - contained in read 43000 0- 6866 discard region 10713:11456 - contained in read 213672 3368- 21084 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1477/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1478/90584. Annotated with 121 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 102:7225 - closest 5' read 28770 ( +89) 13:6575 ( -650) saved region 102:7225 - closest 3' read 437377 ( -361) 463:7765 ( +540) saved region 11022:15682 - closest read 69101 ( +2) 11020:17031 ( +1349) (contained) saved region 11022:15682 - closest 5' read 69101 ( +2) 11020:17031 ( +1349) saved region 11022:15682 - closest 3' read 69101 ( +2) 11020:17031 ( +1349) search for confused edges: tig 1478 read 43608 pos 0-5852 IS confused by 3' edge to read 97304 - best edge read 437377 len 5389 erate 0.0296 score 5229.49 - alt edge len 3938 erate 0.0319 score 3812.38 - absdiff 1417.11 percdiff 31.3455 tig 1478 read 43608 pos 0-5852 NOT confused by 3' edge to read 231055 - best edge read 437377 len 5389 erate 0.0296 score 5229.49 - alt edge len 2377 erate 0.0306 score 2304.26 - absdiff 2925.22 percdiff 77.6565 tig 1478 read 43608 pos 0-5852 NOT confused by 3' edge to read 288482 - best edge read 437377 len 5389 erate 0.0296 score 5229.49 - alt edge len 2764 erate 0.0262 score 2691.58 - absdiff 2537.90 percdiff 64.0798 tig 1478 read 43608 pos 0-5852 NOT confused by 3' edge to read 288483 - best edge read 437377 len 5389 erate 0.0296 score 5229.49 - alt edge len 2766 erate 0.0291 score 2685.51 - absdiff 2543.98 percdiff 64.2824 tig 1478 read 43608 pos 0-5852 NOT confused by 3' edge to read 288484 - best edge read 437377 len 5389 erate 0.0296 score 5229.49 - alt edge len 2776 erate 0.0250 score 2706.60 - absdiff 2522.89 percdiff 63.5801 saved region 102:7225 - 1 best edges are potentially confused discard region 11022:15682 - no confusion in best edges break tig 1478 into up to 2 pieces: 0 7725 repeat (length 7725) 7725 21679 unique (length 13954) Creating Unitig 90915 Creating Unitig 90916 For tig 1478 repeat region 0 7725 - 27/ 0 reads repeat/unique - unitig 90915 created. For tig 1478 unique region 7725 21679 - 0/ 20 reads repeat/unique - unitig 90916 created. Annotating repeats in reads for tig 1479/90584. Annotated with 553 overlaps. Scan reads to discard spanned repeats. discard region 0:5964 - contained in read 227033 0- 7687 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1480/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1481/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 15855:17482 - contained in read 367309 14480- 17611 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1483/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 5454:6368 - contained in read 210675 11- 6974 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1484/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1486/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3622:6790 - contained in read 8058 2511- 8990 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1488/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2474:4385 - contained in read 108689 1458- 5502 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1490/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1491/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2919:4255 - contained in read 56789 25- 4258 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1492/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 6759:9447 - contained in read 423600 4483- 9503 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1494/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1498/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 942:0 - contained in read 59555 0- 5606 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1499/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1305:5 - contained in read 60768 0- 4835 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1500/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1502/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 420:4773 - contained in read 319602 0- 5946 discard region 11050:14535 - contained in read 62453 8522- 14595 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1504/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1505/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 3884:1519 - contained in read 18720 0- 5549 discard region 4793:5561 - contained in read 313142 1742- 10091 thickest edges to the repeat regions: saved region 6289:12536 - closest 5' read 313145 ( +4036) 2253:10581 ( -1955) saved region 6289:12536 - closest 3' read 173203 ( -17) 6306:14643 ( +2107) search for confused edges: tig 1505 read 173203 pos 6306-14643 NOT confused by 3' edge to read 81942 - best edge read 313146 len 4237 erate 0.0297 score 4111.16 - alt edge len 1580 erate 0.0418 score 1513.96 - absdiff 2597.21 percdiff 92.3431 discard region 6289:12536 - no confusion in best edges Annotating repeats in reads for tig 1508/90584. Annotated with 135 overlaps. Scan reads to discard spanned repeats. discard region 66:4332 - contained in read 125460 0- 6979 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1509/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2447:0 - contained in read 383960 0- 4435 discard region 5316:6902 - contained in read 50368 3409- 9548 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1512/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5593:10375 - closest read 493232 ( +55) 5538:19081 ( +8706) (contained) saved region 5593:10375 - closest read 362872 ( +15) 5578:10379 ( +4) (contained) saved region 5593:10375 - closest read 493231 ( +1) 5592:13609 ( +3234) (contained) saved region 5593:10375 - closest 5' read 493232 ( +55) 5538:19081 ( +8706) saved region 5593:10375 - closest 3' read 493232 ( +55) 5538:19081 ( +8706) search for confused edges: discard region 5593:10375 - no confusion in best edges Annotating repeats in reads for tig 1515/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1516/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3982:8234 - closest 5' read 126876 ( +517) 3465:8194 ( -40) saved region 3982:8234 - closest 3' read 38320 ( -3) 3985:8301 ( +67) search for confused edges: discard region 3982:8234 - no confusion in best edges Annotating repeats in reads for tig 1517/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1519/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 11409:9063 - contained in read 244018 4615- 10595 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1521/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3823:4867 - contained in read 120040 0- 7241 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1524/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 0:5849 - contained in read 425258 0- 7450 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1525/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1526/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1528/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1530/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1538/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 20069:19379 - contained in read 396754 12129- 21171 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1541/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1542/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1543/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1546/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1550/90584. Annotated with 287 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:7853 - closest 5' read 111716 ( +0) 0:6502 ( -1351) saved region 0:7853 - closest 3' read 96840 ( -3569) 3569:8125 ( +272) search for confused edges: tig 1550 read 111716 pos 0-6502 NOT confused by 5' edge to read 389068 - best edge read 111719 len 6212 erate 0.0253 score 6054.84 - alt edge len 863 erate 0.0314 score 835.90 - absdiff 5218.93 percdiff 151.4768 tig 1550 read 111716 pos 0-6502 NOT confused by 5' edge to read 433331 - best edge read 111719 len 6212 erate 0.0253 score 6054.84 - alt edge len 1060 erate 0.0302 score 1027.99 - absdiff 5026.85 percdiff 141.9447 tig 1550 read 111716 pos 0-6502 NOT confused by 5' edge to read 451133 - best edge read 111719 len 6212 erate 0.0253 score 6054.84 - alt edge len 2395 erate 0.0344 score 2312.61 - absdiff 3742.22 percdiff 89.4472 tig 1550 read 111716 pos 0-6502 NOT confused by 5' edge to read 509304 - best edge read 111719 len 6212 erate 0.0253 score 6054.84 - alt edge len 1769 erate 0.0358 score 1705.67 - absdiff 4349.17 percdiff 112.0846 tig 1550 read 111716 pos 0-6502 NOT confused by 5' edge to read 512644 - best edge read 111719 len 6212 erate 0.0253 score 6054.84 - alt edge len 1037 erate 0.0319 score 1003.92 - absdiff 5050.92 percdiff 143.1107 tig 1550 read 111716 pos 0-6502 NOT confused by 5' edge to read 512645 - best edge read 111719 len 6212 erate 0.0253 score 6054.84 - alt edge len 1077 erate 0.0242 score 1050.94 - absdiff 5003.90 percdiff 140.8404 tig 1550 read 111719 pos 323-6782 NOT confused by 5' edge to read 190880 - best edge read 111716 len 6179 erate 0.0253 score 6022.67 - alt edge len 2909 erate 0.0255 score 2834.82 - absdiff 3187.85 percdiff 71.9809 tig 1550 read 111719 pos 323-6782 IS confused by 5' edge to read 248862 - best edge read 111716 len 6179 erate 0.0253 score 6022.67 - alt edge len 6066 erate 0.0253 score 5912.53 - absdiff 110.14 percdiff 1.8457 tig 1550 read 111719 pos 323-6782 NOT confused by 5' edge to read 263483 - best edge read 111716 len 6179 erate 0.0253 score 6022.67 - alt edge len 558 erate 0.0324 score 539.92 - absdiff 5482.75 percdiff 167.0910 tig 1550 read 111719 pos 323-6782 IS confused by 3' edge to read 389068 - best edge read 96834 len 3183 erate 0.0233 score 3108.84 - alt edge len 1136 erate 0.0352 score 1096.01 - absdiff 2012.82 percdiff 95.7382 tig 1550 read 111719 pos 323-6782 IS confused by 3' edge to read 512644 - best edge read 96834 len 3183 erate 0.0233 score 3108.84 - alt edge len 1310 erate 0.0382 score 1259.96 - absdiff 1848.88 percdiff 84.6402 tig 1550 read 111719 pos 323-6782 IS confused by 3' edge to read 512645 - best edge read 96834 len 3183 erate 0.0233 score 3108.84 - alt edge len 1349 erate 0.0341 score 1303.00 - absdiff 1805.84 percdiff 81.8633 tig 1550 read 96834 pos 3576-9062 IS confused by 5' edge to read 190880 - best edge read 111719 len 3206 erate 0.0233 score 3131.30 - alt edge len 2931 erate 0.0174 score 2880.00 - absdiff 251.30 percdiff 8.3609 tig 1550 read 96834 pos 3576-9062 IS confused by 5' edge to read 248862 - best edge read 111719 len 3206 erate 0.0233 score 3131.30 - alt edge len 2810 erate 0.0218 score 2748.74 - absdiff 382.56 percdiff 13.0121 tig 1550 read 96834 pos 3576-9062 NOT confused by 5' edge to read 263483 - best edge read 111719 len 3206 erate 0.0233 score 3131.30 - alt edge len 572 erate 0.0299 score 554.90 - absdiff 2576.40 percdiff 139.7865 saved region 0:7853 - 6 best edges are potentially confused break tig 1550 into up to 2 pieces: 0 8353 repeat (length 8353) 8353 9134 unique (length 781) Creating Unitig 90917 Creating Unitig 90918 For tig 1550 repeat region 0 8353 - 88/ 0 reads repeat/unique - unitig 90917 created. For tig 1550 unique region 8353 9134 - 0/ 7 reads repeat/unique - unitig 90918 created. Annotating repeats in reads for tig 1551/90584. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 373:3044 - contained in read 97790 0- 6390 discard region 15650:19513 - contained in read 267559 12127- 21556 thickest edges to the repeat regions: saved region 3290:6393 - closest read 97789 ( +3286) 4:6393 ( +0) (contained) saved region 3290:6393 - closest 5' read 97789 ( +3286) 4:6393 ( +0) saved region 3290:6393 - closest 3' read 97789 ( +3286) 4:6393 ( +0) saved region 12280:13051 - closest read 30970 ( +7520) 4760:13334 ( +283) (contained) saved region 12280:13051 - closest read 30967 ( +7509) 4771:13466 ( +415) (contained) saved region 12280:13051 - closest read 30968 ( +7491) 4789:13369 ( +318) (contained) saved region 12280:13051 - closest read 30969 ( +7483) 4797:13490 ( +439) (contained) saved region 12280:13051 - closest read 30966 ( +7442) 4838:13344 ( +293) (contained) saved region 12280:13051 - closest read 203451 ( +209) 12071:13073 ( +22) (contained) saved region 12280:13051 - closest read 267559 ( +153) 12127:21556 ( +8505) (contained) saved region 12280:13051 - closest read 267558 ( +92) 12188:21510 ( +8459) (contained) saved region 12280:13051 - closest 5' read 267559 ( +153) 12127:21556 ( +8505) saved region 12280:13051 - closest 3' read 30970 ( +7520) 4760:13334 ( +283) search for confused edges: tig 1551 read 30970 pos 4760-13334 IS confused by 5' edge to read 492448 - best edge read 97787 len 1621 erate 0.0371 score 1560.86 - alt edge len 944 erate 0.0340 score 911.90 - absdiff 648.96 percdiff 52.4884 saved region 3290:6393 - 1 best edges are potentially confused discard region 12280:13051 - no confusion in best edges break tig 1551 into up to 3 pieces: 0 2790 unique (length 2790) 2790 6893 repeat (length 4103) 6893 24696 unique (length 17803) Creating Unitig 90919 Creating Unitig 90920 Creating Unitig 90921 For tig 1551 unique region 0 2790 - 0/ 7 reads repeat/unique - unitig 90919 created. For tig 1551 repeat region 2790 6893 - 3/ 0 reads repeat/unique - unitig 90920 created. For tig 1551 unique region 6893 24696 - 0/ 41 reads repeat/unique - unitig 90921 created. Annotating repeats in reads for tig 1552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1555/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 153:7324 - closest read 98773 ( +153) 0:7324 ( +0) (contained) saved region 153:7324 - closest 5' read 98773 ( +153) 0:7324 ( +0) saved region 153:7324 - closest 3' read 98773 ( +153) 0:7324 ( +0) search for confused edges: discard region 153:7324 - no confusion in best edges Annotating repeats in reads for tig 1556/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1745:2526 - contained in read 98873 0- 3042 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1562/90584. Annotated with 55 overlaps. Scan reads to discard spanned repeats. discard region 19:1188 - contained in read 102405 0- 6169 discard region 7757:8315 - contained in read 506566 5009- 9649 thickest edges to the repeat regions: saved region 4877:7790 - closest 5' read 410947 ( +0) 4877:7760 ( -30) saved region 4877:7790 - closest 3' read 506566 ( -132) 5009:9649 ( +1859) search for confused edges: tig 1562 read 102406 pos 122-6268 IS confused by 5' edge to read 32576 - best edge read 506566 len 1259 erate 0.0278 score 1224.00 - alt edge len 1151 erate 0.0383 score 1106.92 - absdiff 117.08 percdiff 10.0461 tig 1562 read 102406 pos 122-6268 IS confused by 5' edge to read 43092 - best edge read 506566 len 1259 erate 0.0278 score 1224.00 - alt edge len 1246 erate 0.0257 score 1213.98 - absdiff 10.02 percdiff 0.8222 tig 1562 read 102406 pos 122-6268 IS confused by 5' edge to read 43093 - best edge read 506566 len 1259 erate 0.0278 score 1224.00 - alt edge len 1193 erate 0.0277 score 1159.95 - absdiff 64.05 percdiff 5.3731 tig 1562 read 102406 pos 122-6268 IS confused by 5' edge to read 43095 - best edge read 506566 len 1259 erate 0.0278 score 1224.00 - alt edge len 1161 erate 0.0267 score 1130.00 - absdiff 94.00 percdiff 7.9863 saved region 4877:7790 - 4 best edges are potentially confused break tig 1562 into up to 3 pieces: 0 4377 unique (length 4377) 4377 8290 repeat (length 3913) 8290 16144 unique (length 7854) Creating Unitig 90922 Creating Unitig 90923 Creating Unitig 90924 For tig 1562 unique region 0 4377 - 0/ 4 reads repeat/unique - unitig 90922 created. For tig 1562 repeat region 4377 8290 - 4/ 0 reads repeat/unique - unitig 90923 created. For tig 1562 unique region 8290 16144 - 0/ 24 reads repeat/unique - unitig 90924 created. Annotating repeats in reads for tig 1565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1566/90584. Annotated with 220 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3135:6002 - closest 5' read 63007 ( +3081) 54:5719 ( -283) saved region 3135:6002 - closest 3' read 342511 ( -461) 3596:10224 ( +4222) search for confused edges: tig 1566 read 342509 pos 3613-10256 IS confused by 5' edge to read 166098 - best edge read 63005 len 2029 erate 0.0340 score 1960.01 - alt edge len 783 erate 0.0409 score 750.98 - absdiff 1209.04 percdiff 89.1954 tig 1566 read 342509 pos 3613-10256 IS confused by 5' edge to read 242515 - best edge read 63005 len 2029 erate 0.0340 score 1960.01 - alt edge len 1459 erate 0.0446 score 1393.93 - absdiff 566.09 percdiff 33.7564 tig 1566 read 342509 pos 3613-10256 IS confused by 5' edge to read 252912 - best edge read 63005 len 2029 erate 0.0340 score 1960.01 - alt edge len 1822 erate 0.0418 score 1745.84 - absdiff 214.17 percdiff 11.5587 tig 1566 read 342509 pos 3613-10256 IS confused by 5' edge to read 313802 - best edge read 63005 len 2029 erate 0.0340 score 1960.01 - alt edge len 986 erate 0.0335 score 952.97 - absdiff 1007.04 percdiff 69.1418 tig 1566 read 342509 pos 3613-10256 IS confused by 5' edge to read 313804 - best edge read 63005 len 2029 erate 0.0340 score 1960.01 - alt edge len 1008 erate 0.0357 score 972.01 - absdiff 988.00 percdiff 67.3936 tig 1566 read 342509 pos 3613-10256 IS confused by 5' edge to read 513032 - best edge read 63005 len 2029 erate 0.0340 score 1960.01 - alt edge len 1471 erate 0.0394 score 1413.04 - absdiff 546.97 percdiff 32.4318 tig 1566 read 342509 pos 3613-10256 IS confused by 5' edge to read 522915 - best edge read 63005 len 2029 erate 0.0340 score 1960.01 - alt edge len 1917 erate 0.0423 score 1835.91 - absdiff 124.10 percdiff 6.5388 saved region 3135:6002 - 7 best edges are potentially confused break tig 1566 into up to 3 pieces: 0 2635 unique (length 2635) 2635 6502 repeat (length 3867) 6502 14908 unique (length 8406) Creating Unitig 90925 Creating Unitig 90926 Creating Unitig 90927 For tig 1566 unique region 0 2635 - 0/ 4 reads repeat/unique - unitig 90925 created. For tig 1566 repeat region 2635 6502 - 8/ 0 reads repeat/unique - unitig 90926 created. For tig 1566 unique region 6502 14908 - 0/ 14 reads repeat/unique - unitig 90927 created. Annotating repeats in reads for tig 1567/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 0:3381 - contained in read 311840 0- 7892 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1571/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6154:6908 - contained in read 329284 3128- 7483 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1573/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5598:8654 - contained in read 389467 879- 10884 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1575/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12116:18401 - closest read 369864 ( +17) 12099:18413 ( +12) (contained) saved region 12116:18401 - closest 5' read 369864 ( +17) 12099:18413 ( +12) saved region 12116:18401 - closest 3' read 369864 ( +17) 12099:18413 ( +12) search for confused edges: discard region 12116:18401 - no confusion in best edges Annotating repeats in reads for tig 1576/90584. Annotated with 82 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1785:6528 - closest 5' read 180174 ( +1785) 0:6518 ( -10) saved region 1785:6528 - closest 3' read 165709 ( -2944) 4729:11528 ( +5000) saved region 7451:12674 - closest 5' read 165713 ( +2338) 5113:12633 ( -41) saved region 7451:12674 - closest 3' read 348860 ( -4603) 12054:20672 ( +7998) saved region 17177:31158 - closest 5' read 116975 ( +576) 16601:24233 ( -6925) saved region 17177:31158 - closest 3' read 477559 ( -8425) 25602:31870 ( +712) search for confused edges: tig 1576 read 315407 pos 20861-27272 NOT confused by 3' edge to read 165713 - best edge read 116975 len 3375 erate 0.0107 score 3338.89 - alt edge len 796 erate 0.0201 score 780.00 - absdiff 2558.89 percdiff 124.2514 tig 1576 read 315407 pos 20861-27272 IS confused by 3' edge to read 348860 - best edge read 116975 len 3375 erate 0.0107 score 3338.89 - alt edge len 1597 erate 0.0138 score 1574.96 - absdiff 1763.93 percdiff 71.7941 discard region 1785:6528 - no confusion in best edges discard region 7451:12674 - no confusion in best edges saved region 17177:31158 - 1 best edges are potentially confused break tig 1576 into up to 3 pieces: 0 16677 unique (length 16677) 16677 31658 repeat (length 14981) 31658 32055 unique (length 397) Creating Unitig 90928 Creating Unitig 90929 Creating Unitig 90930 For tig 1576 unique region 0 16677 - 0/ 12 reads repeat/unique - unitig 90928 created. For tig 1576 repeat region 16677 31658 - 11/ 0 reads repeat/unique - unitig 90929 created. For tig 1576 unique region 31658 32055 - 0/ 3 reads repeat/unique - unitig 90930 created. Annotating repeats in reads for tig 1577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1578/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 1552:8242 - contained in read 119224 207- 8242 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1579/90584. Annotated with 82 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6415 - closest 5' read 439265 ( +0) 0:6387 ( -28) saved region 0:6415 - closest 3' read 292333 ( -5094) 5094:11878 ( +5463) search for confused edges: tig 1579 read 45857 pos 5602-12793 IS confused by 5' edge to read 211709 - best edge read 439265 len 785 erate 0.0305 score 761.06 - alt edge len 784 erate 0.0335 score 757.74 - absdiff 3.32 percdiff 0.4374 tig 1579 read 45857 pos 5602-12793 IS confused by 5' edge to read 250972 - best edge read 439265 len 785 erate 0.0305 score 761.06 - alt edge len 780 erate 0.0282 score 758.00 - absdiff 3.05 percdiff 0.4020 tig 1579 read 45857 pos 5602-12793 IS confused by 5' edge to read 343334 - best edge read 439265 len 785 erate 0.0305 score 761.06 - alt edge len 784 erate 0.0281 score 761.97 - absdiff 0.91 percdiff 0.1198 tig 1579 read 45857 pos 5602-12793 IS confused by 5' edge to read 451793 - best edge read 439265 len 785 erate 0.0305 score 761.06 - alt edge len 778 erate 0.0390 score 747.66 - absdiff 13.40 percdiff 1.7763 saved region 0:6415 - 4 best edges are potentially confused break tig 1579 into up to 2 pieces: 0 6915 repeat (length 6915) 6915 13423 unique (length 6508) Creating Unitig 90931 Creating Unitig 90932 For tig 1579 repeat region 0 6915 - 17/ 0 reads repeat/unique - unitig 90931 created. For tig 1579 unique region 6915 13423 - 0/ 14 reads repeat/unique - unitig 90932 created. Annotating repeats in reads for tig 1582/90584. Annotated with 66 overlaps. Scan reads to discard spanned repeats. discard region 0:7586 - contained in read 427141 0- 8751 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1587/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 2799:6838 - contained in read 162156 1824- 8730 discard region 6839:7946 - contained in read 162156 1824- 8730 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1595/90584. Annotated with 48 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1827:10568 - closest 5' read 132648 ( +1827) 0:10549 ( -19) saved region 1827:10568 - closest 3' read 188938 ( -1432) 3259:12219 ( +1651) search for confused edges: tig 1595 read 132648 pos 0-10549 NOT confused by 3' edge to read 11260 - best edge read 188938 len 7290 erate 0.0154 score 7177.73 - alt edge len 1441 erate 0.0125 score 1422.99 - absdiff 5754.75 percdiff 133.8201 tig 1595 read 132648 pos 0-10549 IS confused by 3' edge to read 111785 - best edge read 188938 len 7290 erate 0.0154 score 7177.73 - alt edge len 5801 erate 0.0206 score 5681.50 - absdiff 1496.23 percdiff 23.2710 tig 1595 read 132648 pos 0-10549 NOT confused by 3' edge to read 124904 - best edge read 188938 len 7290 erate 0.0154 score 7177.73 - alt edge len 1694 erate 0.0315 score 1640.64 - absdiff 5537.10 percdiff 125.5809 tig 1595 read 132648 pos 0-10549 NOT confused by 3' edge to read 153913 - best edge read 188938 len 7290 erate 0.0154 score 7177.73 - alt edge len 912 erate 0.0264 score 887.92 - absdiff 6289.81 percdiff 155.9652 tig 1595 read 132648 pos 0-10549 NOT confused by 3' edge to read 430650 - best edge read 188938 len 7290 erate 0.0154 score 7177.73 - alt edge len 757 erate 0.0319 score 732.85 - absdiff 6444.88 percdiff 162.9432 tig 1595 read 132648 pos 0-10549 NOT confused by 3' edge to read 507055 - best edge read 188938 len 7290 erate 0.0154 score 7177.73 - alt edge len 1280 erate 0.0329 score 1237.89 - absdiff 5939.85 percdiff 141.1624 tig 1595 read 188938 pos 3259-12219 NOT confused by 5' edge to read 124904 - best edge read 132648 len 7270 erate 0.0154 score 7158.04 - alt edge len 3967 erate 0.0223 score 3878.54 - absdiff 3279.51 percdiff 59.4298 tig 1595 read 188938 pos 3259-12219 NOT confused by 5' edge to read 279231 - best edge read 132648 len 7270 erate 0.0154 score 7158.04 - alt edge len 4752 erate 0.0211 score 4651.73 - absdiff 2506.31 percdiff 42.4447 tig 1595 read 188938 pos 3259-12219 NOT confused by 5' edge to read 430650 - best edge read 132648 len 7270 erate 0.0154 score 7158.04 - alt edge len 2785 erate 0.0308 score 2699.22 - absdiff 4458.82 percdiff 90.4677 tig 1595 read 188938 pos 3259-12219 IS confused by 5' edge to read 507055 - best edge read 132648 len 7270 erate 0.0154 score 7158.04 - alt edge len 5722 erate 0.0183 score 5617.29 - absdiff 1540.75 percdiff 24.1208 saved region 1827:10568 - 2 best edges are potentially confused break tig 1595 into up to 3 pieces: 0 1327 unique (length 1327) 1327 11068 repeat (length 9741) 11068 12219 unique (length 1151) Creating Unitig 90933 Creating Unitig 90934 Creating Unitig 90935 For tig 1595 unique region 0 1327 - 0/ 2 reads repeat/unique - unitig 90933 created. For tig 1595 repeat region 1327 11068 - 8/ 0 reads repeat/unique - unitig 90934 created. For tig 1595 unique region 11068 12219 - 0/ 2 reads repeat/unique - unitig 90935 created. Annotating repeats in reads for tig 1597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1599/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1567:5510 - closest 5' read 499114 ( +1392) 175:5401 ( -109) saved region 1567:5510 - closest 3' read 321176 ( -1625) 3192:9917 ( +4407) search for confused edges: tig 1599 read 499114 pos 175-5401 IS confused by 5' edge to read 236517 - best edge read 321176 len 2209 erate 0.0168 score 2171.89 - alt edge len 2160 erate 0.0171 score 2123.06 - absdiff 48.82 percdiff 2.2736 saved region 1567:5510 - 1 best edges are potentially confused break tig 1599 into up to 3 pieces: 0 1067 unique (length 1067) 1067 6010 repeat (length 4943) 6010 24869 unique (length 18859) Creating Unitig 90936 Creating Unitig 90937 Creating Unitig 90938 For tig 1599 unique region 0 1067 - 0/ 6 reads repeat/unique - unitig 90936 created. For tig 1599 repeat region 1067 6010 - 9/ 0 reads repeat/unique - unitig 90937 created. For tig 1599 unique region 6010 24869 - 0/ 21 reads repeat/unique - unitig 90938 created. Annotating repeats in reads for tig 1606/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13121:13742 - contained in read 499463 6455- 14424 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1607/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1609/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 10294:12160 - contained in read 105987 9293- 17155 discard region 16522:17314 - contained in read 231694 10568- 17353 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1614/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1617/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:11899 - closest 5' read 153935 ( +0) 0:2690 ( -9209) saved region 0:11899 - closest 3' read 6917 ( -3152) 3152:11899 ( +0) search for confused edges: tig 1617 read 153935 pos 0-2690 IS confused by 3' edge to read 52671 - best edge read 186466 len 2530 erate 0.0215 score 2475.61 - alt edge len 2072 erate 0.0190 score 2032.63 - absdiff 442.97 percdiff 19.6517 tig 1617 read 325760 pos 2218-10452 NOT confused by 5' edge to read 346634 - best edge read 6917 len 7300 erate 0.0209 score 7147.43 - alt edge len 3353 erate 0.0153 score 3301.70 - absdiff 3845.73 percdiff 73.6086 tig 1617 read 325760 pos 2218-10452 NOT confused by 5' edge to read 399070 - best edge read 6917 len 7300 erate 0.0209 score 7147.43 - alt edge len 697 erate 0.0101 score 689.96 - absdiff 6457.47 percdiff 164.7862 tig 1617 read 325760 pos 2218-10452 IS confused by 5' edge to read 470429 - best edge read 6917 len 7300 erate 0.0209 score 7147.43 - alt edge len 5270 erate 0.0135 score 5198.86 - absdiff 1948.57 percdiff 31.5654 tig 1617 read 325760 pos 2218-10452 NOT confused by 5' edge to read 492589 - best edge read 6917 len 7300 erate 0.0209 score 7147.43 - alt edge len 1329 erate 0.0166 score 1306.94 - absdiff 5840.49 percdiff 138.1651 tig 1617 read 6917 pos 3152-11899 NOT confused by 5' edge to read 25234 - best edge read 325760 len 7310 erate 0.0209 score 7157.22 - alt edge len 1506 erate 0.0313 score 1458.86 - absdiff 5698.36 percdiff 132.2726 tig 1617 read 6917 pos 3152-11899 NOT confused by 5' edge to read 25236 - best edge read 325760 len 7310 erate 0.0209 score 7157.22 - alt edge len 1462 erate 0.0322 score 1414.92 - absdiff 5742.30 percdiff 133.9757 saved region 0:11899 - 2 best edges are potentially confused Annotating repeats in reads for tig 1618/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7604:7068 - contained in read 154019 1- 7580 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1622/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 14541:15524 - contained in read 528106 13416- 16850 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1623/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 8948:13255 - contained in read 427081 2688- 14081 discard region 17585:18214 - contained in read 529100 11445- 18974 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1625/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6203:12299 - contained in read 287294 4765- 16077 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1627/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1628/90584. Annotated with 46 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11464:22438 - closest read 342725 ( +349) 11115:22441 ( +3) (contained) saved region 11464:22438 - closest 5' read 342725 ( +349) 11115:22441 ( +3) saved region 11464:22438 - closest 3' read 342725 ( +349) 11115:22441 ( +3) search for confused edges: discard region 11464:22438 - no confusion in best edges Annotating repeats in reads for tig 1632/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1633/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:890 - contained in read 119381 0- 6272 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1640/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 0:6901 - contained in read 397458 0- 9619 discard region 7502:6978 - contained in read 397458 0- 9619 discard region 7689:11662 - contained in read 174022 6305- 12452 discard region 11798:12452 - contained in read 174022 6305- 12452 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1642/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 15840:15129 - contained in read 187980 11674- 15804 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1643/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1644/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2375:7863 - closest read 82353 ( +0) 2375:8193 ( +330) (contained) saved region 2375:7863 - closest 5' read 82353 ( +0) 2375:8193 ( +330) saved region 2375:7863 - closest 3' read 82353 ( +0) 2375:8193 ( +330) saved region 14633:19397 - closest read 303565 ( +343) 14290:19397 ( +0) (contained) saved region 14633:19397 - closest 5' read 303565 ( +343) 14290:19397 ( +0) saved region 14633:19397 - closest 3' read 303565 ( +343) 14290:19397 ( +0) search for confused edges: discard region 2375:7863 - no confusion in best edges discard region 14633:19397 - no confusion in best edges Annotating repeats in reads for tig 1645/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1646/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 13:1010 - contained in read 177528 0- 6444 discard region 5350:6444 - contained in read 177530 47- 6448 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1652/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 766:4892 - contained in read 179119 0- 5497 discard region 9388:10722 - contained in read 13978 3751- 14480 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1653/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1658/90584. Annotated with 1208 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:7567 - closest 5' read 366916 ( +0) 0:6571 ( -996) saved region 0:7567 - closest 3' read 184649 ( -290) 290:7567 ( +0) search for confused edges: tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 6176 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 1763 erate 0.0323 score 1706.06 - absdiff 4348.62 percdiff 112.0673 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 6177 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 1708 erate 0.0299 score 1656.93 - absdiff 4397.74 percdiff 114.0552 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 9556 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 2292 erate 0.0376 score 2205.82 - absdiff 3848.85 percdiff 93.1870 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 15260 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 1453 erate 0.0434 score 1389.94 - absdiff 4664.73 percdiff 125.3183 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 39725 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 1491 erate 0.0282 score 1448.95 - absdiff 4605.72 percdiff 122.7598 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 51583 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 1481 erate 0.0257 score 1442.94 - absdiff 4611.73 percdiff 123.0188 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 83618 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 2944 erate 0.0355 score 2839.49 - absdiff 3215.18 percdiff 72.2988 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 93657 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 3161 erate 0.0317 score 3060.80 - absdiff 2993.88 percdiff 65.6878 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 97422 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 2338 erate 0.0335 score 2259.68 - absdiff 3794.99 percdiff 91.2878 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 100374 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 1999 erate 0.0332 score 1932.63 - absdiff 4122.04 percdiff 103.2148 tig 1658 read 366916 pos 0-6571 IS confused by 5' edge to read 121025 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 4814 erate 0.0283 score 4677.76 - absdiff 1376.91 percdiff 25.6588 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 258664 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 905 erate 0.0376 score 870.97 - absdiff 5183.70 percdiff 149.6958 tig 1658 read 366916 pos 0-6571 IS confused by 5' edge to read 326611 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 4798 erate 0.0247 score 4679.49 - absdiff 1375.18 percdiff 25.6225 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 361754 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 3609 erate 0.0213 score 3532.13 - absdiff 2522.54 percdiff 52.6254 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 383582 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 2131 erate 0.0301 score 2066.86 - absdiff 3987.82 percdiff 98.2036 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 383583 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 2329 erate 0.0236 score 2274.04 - absdiff 3780.64 percdiff 90.7857 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 394729 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 2339 erate 0.0339 score 2259.71 - absdiff 3794.96 percdiff 91.2868 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 394730 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 2329 erate 0.0393 score 2237.47 - absdiff 3817.20 percdiff 92.0679 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 398107 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 2069 erate 0.0363 score 1993.90 - absdiff 4060.78 percdiff 100.9068 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 402645 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 1808 erate 0.0293 score 1755.03 - absdiff 4299.65 percdiff 110.1104 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 402648 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 1818 erate 0.0343 score 1755.64 - absdiff 4299.03 percdiff 110.0859 tig 1658 read 366916 pos 0-6571 IS confused by 5' edge to read 423011 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 5969 erate 0.0217 score 5839.47 - absdiff 215.20 percdiff 3.6186 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 458079 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 1429 erate 0.0315 score 1383.99 - absdiff 4670.69 percdiff 125.5787 tig 1658 read 366916 pos 0-6571 NOT confused by 5' edge to read 458080 - best edge read 184649 len 6260 erate 0.0328 score 6054.67 - alt edge len 1310 erate 0.0313 score 1269.00 - absdiff 4785.67 percdiff 130.6906 tig 1658 read 184649 pos 290-7567 NOT confused by 5' edge to read 25280 - best edge read 366916 len 6281 erate 0.0328 score 6074.98 - alt edge len 762 erate 0.0446 score 728.01 - absdiff 5346.97 percdiff 157.1945 tig 1658 read 184649 pos 290-7567 NOT confused by 5' edge to read 147282 - best edge read 366916 len 6281 erate 0.0328 score 6074.98 - alt edge len 1025 erate 0.0361 score 988.00 - absdiff 5086.99 percdiff 144.0464 tig 1658 read 184649 pos 290-7567 NOT confused by 5' edge to read 225280 - best edge read 366916 len 6281 erate 0.0328 score 6074.98 - alt edge len 3667 erate 0.0447 score 3503.09 - absdiff 2571.90 percdiff 53.7039 tig 1658 read 184649 pos 290-7567 NOT confused by 5' edge to read 289935 - best edge read 366916 len 6281 erate 0.0328 score 6074.98 - alt edge len 3957 erate 0.0341 score 3822.07 - absdiff 2252.92 percdiff 45.5270 tig 1658 read 184649 pos 290-7567 IS confused by 5' edge to read 459664 - best edge read 366916 len 6281 erate 0.0328 score 6074.98 - alt edge len 5449 erate 0.0432 score 5213.60 - absdiff 861.38 percdiff 15.2611 saved region 0:7567 - 4 best edges are potentially confused Annotating repeats in reads for tig 1660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1668/90584. Annotated with 1436 overlaps. Scan reads to discard spanned repeats. discard region 8024:11471 - contained in read 196772 4779- 11471 thickest edges to the repeat regions: saved region 1409:7269 - closest 5' read 769 ( +1409) 0:7169 ( -100) saved region 1409:7269 - closest 3' read 196776 ( -3348) 4757:11438 ( +4169) search for confused edges: tig 1668 read 196772 pos 4779-11471 IS confused by 5' edge to read 221203 - best edge read 769 len 2390 erate 0.0346 score 2307.31 - alt edge len 2388 erate 0.0339 score 2307.05 - absdiff 0.26 percdiff 0.0112 tig 1668 read 196772 pos 4779-11471 IS confused by 5' edge to read 313641 - best edge read 769 len 2390 erate 0.0346 score 2307.31 - alt edge len 2383 erate 0.0272 score 2318.18 - absdiff 10.88 percdiff 0.4703 tig 1668 read 196772 pos 4779-11471 IS confused by 5' edge to read 488639 - best edge read 769 len 2390 erate 0.0346 score 2307.31 - alt edge len 1760 erate 0.0322 score 1703.33 - absdiff 603.98 percdiff 30.1188 tig 1668 read 196772 pos 4779-11471 IS confused by 5' edge to read 529937 - best edge read 769 len 2390 erate 0.0346 score 2307.31 - alt edge len 2384 erate 0.0310 score 2310.10 - absdiff 2.79 percdiff 0.1208 saved region 1409:7269 - 4 best edges are potentially confused break tig 1668 into up to 3 pieces: 0 909 unique (length 909) 909 7769 repeat (length 6860) 7769 11471 unique (length 3702) Creating Unitig 90939 Creating Unitig 90940 Creating Unitig 90941 For tig 1668 unique region 0 909 - 0/ 7 reads repeat/unique - unitig 90939 created. For tig 1668 repeat region 909 7769 - 64/ 0 reads repeat/unique - unitig 90940 created. For tig 1668 unique region 7769 11471 - 0/ 6 reads repeat/unique - unitig 90941 created. Annotating repeats in reads for tig 1671/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 6353:8574 - contained in read 341355 4169- 10506 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1673/90584. Annotated with 225 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:10101 - closest 5' read 437781 ( +0) 0:7115 ( -2986) saved region 0:10101 - closest 3' read 184411 ( -6558) 6558:12285 ( +2184) search for confused edges: tig 1673 read 437781 pos 0-7115 NOT confused by 3' edge to read 240589 - best edge read 203115 len 6681 erate 0.0195 score 6550.72 - alt edge len 722 erate 0.0432 score 690.81 - absdiff 5859.91 percdiff 161.8418 tig 1673 read 437781 pos 0-7115 NOT confused by 3' edge to read 315744 - best edge read 203115 len 6681 erate 0.0195 score 6550.72 - alt edge len 841 erate 0.0421 score 805.59 - absdiff 5745.13 percdiff 156.1958 tig 1673 read 203115 pos 449-8956 IS confused by 5' edge to read 23610 - best edge read 437781 len 6666 erate 0.0195 score 6536.01 - alt edge len 4881 erate 0.0185 score 4790.70 - absdiff 1745.31 percdiff 30.8176 tig 1673 read 203115 pos 449-8956 NOT confused by 5' edge to read 240589 - best edge read 437781 len 6666 erate 0.0195 score 6536.01 - alt edge len 1937 erate 0.0243 score 1889.93 - absdiff 4646.08 percdiff 110.2804 tig 1673 read 203115 pos 449-8956 NOT confused by 5' edge to read 240590 - best edge read 437781 len 6666 erate 0.0195 score 6536.01 - alt edge len 1717 erate 0.0292 score 1666.86 - absdiff 4869.15 percdiff 118.7181 tig 1673 read 203115 pos 449-8956 NOT confused by 5' edge to read 315244 - best edge read 437781 len 6666 erate 0.0195 score 6536.01 - alt edge len 1051 erate 0.0229 score 1026.93 - absdiff 5509.08 percdiff 145.6861 tig 1673 read 203115 pos 449-8956 NOT confused by 5' edge to read 315744 - best edge read 437781 len 6666 erate 0.0195 score 6536.01 - alt edge len 1616 erate 0.0186 score 1585.94 - absdiff 4950.07 percdiff 121.8936 tig 1673 read 203115 pos 449-8956 IS confused by 5' edge to read 325067 - best edge read 437781 len 6666 erate 0.0195 score 6536.01 - alt edge len 5333 erate 0.0182 score 5235.94 - absdiff 1300.07 percdiff 22.0876 tig 1673 read 203115 pos 449-8956 NOT confused by 5' edge to read 378116 - best edge read 437781 len 6666 erate 0.0195 score 6536.01 - alt edge len 1636 erate 0.0363 score 1576.61 - absdiff 4959.40 percdiff 122.2637 tig 1673 read 203115 pos 449-8956 NOT confused by 5' edge to read 417674 - best edge read 437781 len 6666 erate 0.0195 score 6536.01 - alt edge len 549 erate 0.0237 score 535.99 - absdiff 6000.02 percdiff 169.6839 tig 1673 read 203115 pos 449-8956 NOT confused by 5' edge to read 473397 - best edge read 437781 len 6666 erate 0.0195 score 6536.01 - alt edge len 790 erate 0.0165 score 776.97 - absdiff 5759.05 percdiff 157.5021 saved region 0:10101 - 2 best edges are potentially confused break tig 1673 into up to 2 pieces: 0 10601 repeat (length 10601) 10601 12338 unique (length 1737) Creating Unitig 90942 Creating Unitig 90943 For tig 1673 repeat region 0 10601 - 6/ 0 reads repeat/unique - unitig 90942 created. For tig 1673 unique region 10601 12338 - 0/ 2 reads repeat/unique - unitig 90943 created. Annotating repeats in reads for tig 1674/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1675/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 12551:13627 - contained in read 203892 10520- 13656 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1676/90584. Annotated with 60 overlaps. Scan reads to discard spanned repeats. discard region 9363:10529 - contained in read 22626 4869- 11859 thickest edges to the repeat regions: saved region 3110:8561 - closest 5' read 294281 ( +47) 3063:8341 ( -220) saved region 3110:8561 - closest 3' read 376203 ( -8) 3118:10241 ( +1680) search for confused edges: discard region 3110:8561 - no confusion in best edges Annotating repeats in reads for tig 1681/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1682/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1683/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1684/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1687/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3709:5036 - contained in read 213024 0- 6624 thickest edges to the repeat regions: saved region 5685:8326 - closest read 154479 ( +5378) 307:8503 ( +177) (contained) saved region 5685:8326 - closest read 154478 ( +5373) 312:8511 ( +185) (contained) saved region 5685:8326 - closest read 411681 ( +2013) 3672:8766 ( +440) (contained) saved region 5685:8326 - closest read 236328 ( +1979) 3706:8556 ( +230) (contained) saved region 5685:8326 - closest read 108730 ( +1978) 3707:8716 ( +390) (contained) saved region 5685:8326 - closest read 375968 ( +1974) 3711:8737 ( +411) (contained) saved region 5685:8326 - closest read 191694 ( +1679) 4006:8697 ( +371) (contained) saved region 5685:8326 - closest read 500595 ( +1653) 4032:8750 ( +424) (contained) saved region 5685:8326 - closest read 138031 ( +1518) 4167:8799 ( +473) (contained) saved region 5685:8326 - closest read 138032 ( +1484) 4201:8762 ( +436) (contained) saved region 5685:8326 - closest read 307882 ( +1398) 4287:8734 ( +408) (contained) saved region 5685:8326 - closest read 108729 ( +1357) 4328:8519 ( +193) (contained) saved region 5685:8326 - closest read 355086 ( +568) 5117:8711 ( +385) (contained) saved region 5685:8326 - closest read 41545 ( +553) 5132:8745 ( +419) (contained) saved region 5685:8326 - closest read 458733 ( +15) 5670:8756 ( +430) (contained) saved region 5685:8326 - closest read 307881 ( +15) 5670:8665 ( +339) (contained) saved region 5685:8326 - closest 5' read 138031 ( +1518) 4167:8799 ( +473) saved region 5685:8326 - closest 3' read 154479 ( +5378) 307:8503 ( +177) search for confused edges: discard region 5685:8326 - no confusion in best edges Annotating repeats in reads for tig 1688/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 1:3853 - contained in read 282944 0- 6047 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1695/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1699/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 4059:5260 - contained in read 464224 3556- 9562 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1701/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5975:11819 - closest read 493803 ( +0) 5975:11847 ( +28) (contained) saved region 5975:11819 - closest 5' read 493803 ( +0) 5975:11847 ( +28) saved region 5975:11819 - closest 3' read 493803 ( +0) 5975:11847 ( +28) search for confused edges: discard region 5975:11819 - no confusion in best edges Annotating repeats in reads for tig 1704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1705/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1706/90584. Annotated with 200 overlaps. Scan reads to discard spanned repeats. discard region 19624:21602 - contained in read 526443 18910- 22013 thickest edges to the repeat regions: saved region 3464:19401 - closest 5' read 302132 ( +3020) 444:5873 (-13528) saved region 3464:19401 - closest 3' read 505232 (-11514) 14978:21148 ( +1747) search for confused edges: tig 1706 read 302132 pos 444-5873 IS confused by 5' edge to read 366316 - best edge read 439775 len 2339 erate 0.0209 score 2290.11 - alt edge len 1229 erate 0.0163 score 1208.97 - absdiff 1081.15 percdiff 61.7961 tig 1706 read 439775 pos 3534-11203 NOT confused by 3' edge to read 98154 - best edge read 442673 len 5351 erate 0.0120 score 5286.79 - alt edge len 705 erate 0.0442 score 673.84 - absdiff 4612.95 percdiff 154.7807 tig 1706 read 439775 pos 3534-11203 NOT confused by 3' edge to read 117151 - best edge read 442673 len 5351 erate 0.0120 score 5286.79 - alt edge len 830 erate 0.0411 score 795.89 - absdiff 4490.90 percdiff 147.6620 tig 1706 read 439775 pos 3534-11203 NOT confused by 3' edge to read 505232 - best edge read 442673 len 5351 erate 0.0120 score 5286.79 - alt edge len 755 erate 0.0212 score 738.99 - absdiff 4547.79 percdiff 150.9445 tig 1706 read 442673 pos 5852-13108 NOT confused by 3' edge to read 225399 - best edge read 439775 len 5358 erate 0.0120 score 5293.70 - alt edge len 2224 erate 0.0254 score 2167.51 - absdiff 3126.19 percdiff 83.7985 tig 1706 read 442673 pos 5852-13108 NOT confused by 3' edge to read 302131 - best edge read 439775 len 5358 erate 0.0120 score 5293.70 - alt edge len 2248 erate 0.0250 score 2191.80 - absdiff 3101.90 percdiff 82.8776 tig 1706 read 442673 pos 5852-13108 NOT confused by 3' edge to read 505232 - best edge read 439775 len 5358 erate 0.0120 score 5293.70 - alt edge len 1441 erate 0.0313 score 1395.90 - absdiff 3897.81 percdiff 116.5333 tig 1706 read 366316 pos 6945-15877 NOT confused by 5' edge to read 225399 - best edge read 442673 len 6166 erate 0.0145 score 6076.59 - alt edge len 1133 erate 0.0205 score 1109.77 - absdiff 4966.82 percdiff 138.2290 tig 1706 read 366316 pos 6945-15877 NOT confused by 5' edge to read 302131 - best edge read 442673 len 6166 erate 0.0145 score 6076.59 - alt edge len 1156 erate 0.0208 score 1131.96 - absdiff 4944.64 percdiff 137.1882 tig 1706 read 366316 pos 6945-15877 NOT confused by 5' edge to read 302132 - best edge read 442673 len 6166 erate 0.0145 score 6076.59 - alt edge len 1237 erate 0.0163 score 1216.84 - absdiff 4859.76 percdiff 133.2639 tig 1706 read 505232 pos 14978-21148 IS confused by 5' edge to read 439775 - best edge read 366316 len 911 erate 0.0323 score 881.57 - alt edge len 763 erate 0.0212 score 746.82 - absdiff 134.75 percdiff 16.5500 saved region 3464:19401 - 2 best edges are potentially confused break tig 1706 into up to 3 pieces: 0 2964 unique (length 2964) 2964 19901 repeat (length 16937) 19901 22013 unique (length 2112) Creating Unitig 90944 Creating Unitig 90945 Creating Unitig 90946 For tig 1706 unique region 0 2964 - 0/ 4 reads repeat/unique - unitig 90944 created. For tig 1706 repeat region 2964 19901 - 52/ 0 reads repeat/unique - unitig 90945 created. For tig 1706 unique region 19901 22013 - 0/ 2 reads repeat/unique - unitig 90946 created. Annotating repeats in reads for tig 1708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1711/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10126:14960 - closest 5' read 505561 ( +857) 9269:13961 ( -999) saved region 10126:14960 - closest 3' read 11959 ( -104) 10230:14971 ( +11) search for confused edges: discard region 10126:14960 - no confusion in best edges Annotating repeats in reads for tig 1717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1718/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 15385:16719 - contained in read 483966 6294- 16725 thickest edges to the repeat regions: saved region 6269:10324 - closest 5' read 82826 ( +5390) 879:8710 ( -1614) saved region 6269:10324 - closest 3' read 152104 ( -15) 6284:10604 ( +280) search for confused edges: discard region 6269:10324 - no confusion in best edges Annotating repeats in reads for tig 1719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1726/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1729/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 3:2797 - contained in read 243025 0- 7524 discard region 4233:6808 - contained in read 243025 0- 7524 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1730/90584. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 917:7944 - contained in read 421148 408- 7945 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1733/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1734/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1735/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:1213 - contained in read 519485 0- 3195 discard region 4531:5464 - contained in read 360898 678- 6335 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1739/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1741/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 319:3770 - closest 5' read 210512 ( +319) 0:3698 ( -72) saved region 319:3770 - closest 3' read 71548 ( -671) 990:5209 ( +1439) search for confused edges: discard region 319:3770 - no confusion in best edges Annotating repeats in reads for tig 1742/90584. Annotated with 191 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3324:6308 - closest 5' read 252911 ( +3315) 9:5805 ( -503) saved region 3324:6308 - closest 3' read 479535 ( -219) 3543:9699 ( +3391) search for confused edges: tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 14067 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1350 erate 0.0290 score 1310.85 - absdiff 840.06 percdiff 48.5337 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 14141 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 2034 erate 0.0374 score 1957.93 - absdiff 192.98 percdiff 9.3935 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 14142 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 2099 erate 0.0367 score 2021.97 - absdiff 128.94 percdiff 6.1801 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 14143 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 2023 erate 0.0421 score 1937.83 - absdiff 213.08 percdiff 10.4227 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 14144 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 2192 erate 0.0315 score 2122.95 - absdiff 27.96 percdiff 1.3084 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 24338 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 664 erate 0.0227 score 648.93 - absdiff 1501.98 percdiff 107.2908 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 24341 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 665 erate 0.0242 score 648.91 - absdiff 1502.00 percdiff 107.2930 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 32504 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 970 erate 0.0259 score 944.88 - absdiff 1206.03 percdiff 77.9145 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 148939 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1082 erate 0.0333 score 1045.97 - absdiff 1104.94 percdiff 69.1262 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 222617 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1302 erate 0.0369 score 1253.96 - absdiff 896.96 percdiff 52.6866 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 274091 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 2193 erate 0.0370 score 2111.86 - absdiff 39.05 percdiff 1.8322 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 340094 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1327 erate 0.0234 score 1295.95 - absdiff 854.96 percdiff 49.6082 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 340095 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1282 erate 0.0227 score 1252.90 - absdiff 898.01 percdiff 52.7651 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 340097 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1287 erate 0.0210 score 1259.97 - absdiff 890.94 percdiff 52.2409 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 342510 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1876 erate 0.0397 score 1801.52 - absdiff 349.39 percdiff 17.6797 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 342514 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1860 erate 0.0402 score 1785.23 - absdiff 365.68 percdiff 18.5808 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 437670 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 705 erate 0.0398 score 676.94 - absdiff 1473.97 percdiff 104.2466 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 472139 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1155 erate 0.0286 score 1121.97 - absdiff 1028.94 percdiff 62.8770 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 472141 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1226 erate 0.0212 score 1200.01 - absdiff 950.90 percdiff 56.7547 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 472142 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1206 erate 0.0158 score 1186.95 - absdiff 963.97 percdiff 57.7596 tig 1742 read 252915 pos 242-5771 IS confused by 5' edge to read 493883 - best edge read 479535 len 2228 erate 0.0346 score 2150.91 - alt edge len 1963 erate 0.0204 score 1922.95 - absdiff 227.96 percdiff 11.1912 saved region 3324:6308 - 21 best edges are potentially confused break tig 1742 into up to 3 pieces: 0 2824 unique (length 2824) 2824 6808 repeat (length 3984) 6808 9857 unique (length 3049) Creating Unitig 90947 Creating Unitig 90948 Creating Unitig 90949 For tig 1742 unique region 0 2824 - 0/ 5 reads repeat/unique - unitig 90947 created. For tig 1742 repeat region 2824 6808 - 11/ 0 reads repeat/unique - unitig 90948 created. For tig 1742 unique region 6808 9857 - 0/ 2 reads repeat/unique - unitig 90949 created. Annotating repeats in reads for tig 1744/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 1628:2957 - contained in read 253627 0- 9426 discard region 10228:11557 - contained in read 458521 1673- 15817 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1747/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2:5002 - contained in read 259200 0- 6362 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1749/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 22268:24625 - contained in read 239480 17718- 25582 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1757/90584. Annotated with 111 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3248:9491 - closest 5' read 495071 ( +2868) 380:7604 ( -1887) saved region 3248:9491 - closest 3' read 45279 ( -1419) 4667:11456 ( +1965) search for confused edges: tig 1757 read 110676 pos 6207-14301 IS confused by 5' edge to read 7280 - best edge read 495073 len 1386 erate 0.0173 score 1362.02 - alt edge len 819 erate 0.0208 score 801.96 - absdiff 560.06 percdiff 51.7616 saved region 3248:9491 - 1 best edges are potentially confused break tig 1757 into up to 3 pieces: 0 2748 unique (length 2748) 2748 9991 repeat (length 7243) 9991 14401 unique (length 4410) Creating Unitig 90950 Creating Unitig 90951 For tig 1757 unique region 0 2748 - 0/ 13 reads repeat/unique - unitig 90950 created. For tig 1757 repeat region 2748 9991 - 0/ 0 repeat/unique reads - no new unitig created. For tig 1757 unique region 9991 14401 - 0/ 20 reads repeat/unique - unitig 90951 created. Annotating repeats in reads for tig 1758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1759/90584. Annotated with 97 overlaps. Scan reads to discard spanned repeats. discard region 16900:18636 - contained in read 486813 12381- 19737 thickest edges to the repeat regions: saved region 12104:15240 - closest 5' read 405688 ( +3912) 8192:13361 ( -1879) saved region 12104:15240 - closest 3' read 486813 ( -277) 12381:19737 ( +4497) search for confused edges: tig 1759 read 405688 pos 8192-13361 IS confused by 3' edge to read 323849 - best edge read 486813 len 980 erate 0.0276 score 952.95 - alt edge len 614 erate 0.0164 score 603.93 - absdiff 349.02 percdiff 44.8360 saved region 12104:15240 - 1 best edges are potentially confused break tig 1759 into up to 3 pieces: 0 11604 unique (length 11604) 11604 15740 repeat (length 4136) 15740 20911 unique (length 5171) Creating Unitig 90952 Creating Unitig 90953 Creating Unitig 90954 For tig 1759 unique region 0 11604 - 0/ 17 reads repeat/unique - unitig 90952 created. For tig 1759 repeat region 11604 15740 - 1/ 0 reads repeat/unique - unitig 90953 created. For tig 1759 unique region 15740 20911 - 0/ 15 reads repeat/unique - unitig 90954 created. Annotating repeats in reads for tig 1760/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 5933:4986 - contained in read 273489 0- 5796 discard region 6998:8241 - contained in read 242457 1543- 9826 thickest edges to the repeat regions: saved region 14364:15333 - closest read 206931 ( +8354) 6010:15350 ( +17) (contained) saved region 14364:15333 - closest read 340697 ( +8166) 6198:15351 ( +18) (contained) saved region 14364:15333 - closest 5' read 340697 ( +8166) 6198:15351 ( +18) saved region 14364:15333 - closest 3' read 206931 ( +8354) 6010:15350 ( +17) search for confused edges: discard region 14364:15333 - no confusion in best edges Annotating repeats in reads for tig 1766/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 2724:7165 - contained in read 445954 684- 7813 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1768/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 5175:3310 - contained in read 284581 0- 4201 discard region 7319:9590 - contained in read 515200 5292- 13169 discard region 10637:11962 - contained in read 515200 5292- 13169 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1770/90584. Annotated with 157 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 618:7360 - closest 5' read 285451 ( +618) 0:5689 ( -1671) saved region 618:7360 - closest 3' read 373511 ( -1229) 1847:7360 ( +0) search for confused edges: tig 1770 read 285451 pos 0-5689 IS confused by 3' edge to read 362250 - best edge read 373511 len 3842 erate 0.0348 score 3708.30 - alt edge len 3575 erate 0.0311 score 3463.82 - absdiff 244.48 percdiff 6.8175 tig 1770 read 285451 pos 0-5689 IS confused by 3' edge to read 420836 - best edge read 373511 len 3842 erate 0.0348 score 3708.30 - alt edge len 3325 erate 0.0411 score 3188.34 - absdiff 519.96 percdiff 15.0785 tig 1770 read 373511 pos 1847-7360 NOT confused by 5' edge to read 76686 - best edge read 285451 len 3834 erate 0.0348 score 3700.58 - alt edge len 665 erate 0.0317 score 643.92 - absdiff 3056.66 percdiff 140.7140 tig 1770 read 373511 pos 1847-7360 IS confused by 5' edge to read 79518 - best edge read 285451 len 3834 erate 0.0348 score 3700.58 - alt edge len 1796 erate 0.0386 score 1726.67 - absdiff 1973.90 percdiff 72.7404 tig 1770 read 373511 pos 1847-7360 NOT confused by 5' edge to read 196244 - best edge read 285451 len 3834 erate 0.0348 score 3700.58 - alt edge len 1332 erate 0.0369 score 1282.85 - absdiff 2417.73 percdiff 97.0307 tig 1770 read 373511 pos 1847-7360 NOT confused by 5' edge to read 209901 - best edge read 285451 len 3834 erate 0.0348 score 3700.58 - alt edge len 689 erate 0.0233 score 672.95 - absdiff 3027.63 percdiff 138.4527 tig 1770 read 373511 pos 1847-7360 IS confused by 5' edge to read 331651 - best edge read 285451 len 3834 erate 0.0348 score 3700.58 - alt edge len 1668 erate 0.0351 score 1609.45 - absdiff 2091.12 percdiff 78.7613 tig 1770 read 373511 pos 1847-7360 IS confused by 5' edge to read 359257 - best edge read 285451 len 3834 erate 0.0348 score 3700.58 - alt edge len 1671 erate 0.0391 score 1605.66 - absdiff 2094.91 percdiff 78.9603 tig 1770 read 373511 pos 1847-7360 IS confused by 5' edge to read 393633 - best edge read 285451 len 3834 erate 0.0348 score 3700.58 - alt edge len 3661 erate 0.0340 score 3536.53 - absdiff 164.05 percdiff 4.5336 tig 1770 read 373511 pos 1847-7360 NOT confused by 5' edge to read 412323 - best edge read 285451 len 3834 erate 0.0348 score 3700.58 - alt edge len 598 erate 0.0338 score 577.79 - absdiff 3122.79 percdiff 145.9805 tig 1770 read 373511 pos 1847-7360 NOT confused by 5' edge to read 502444 - best edge read 285451 len 3834 erate 0.0348 score 3700.58 - alt edge len 1448 erate 0.0340 score 1398.77 - absdiff 2301.81 percdiff 90.2786 tig 1770 read 373511 pos 1847-7360 NOT confused by 5' edge to read 502446 - best edge read 285451 len 3834 erate 0.0348 score 3700.58 - alt edge len 1410 erate 0.0393 score 1354.59 - absdiff 2345.99 percdiff 92.8156 saved region 618:7360 - 6 best edges are potentially confused break tig 1770 into up to 2 pieces: 0 118 unique (length 118) 118 7360 repeat (length 7242) Creating Unitig 90955 Creating Unitig 90956 For tig 1770 unique region 0 118 - 0/ 1 reads repeat/unique - unitig 90955 created. For tig 1770 repeat region 118 7360 - 4/ 0 reads repeat/unique - unitig 90956 created. Annotating repeats in reads for tig 1774/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 1547:2216 - contained in read 349281 0- 5148 discard region 2671:5150 - contained in read 288710 1655- 12899 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1785/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1789/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1791/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4974:6555 - contained in read 19355 930- 6555 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1814/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6:7119 - closest 5' read 126584 ( +6) 0:5377 ( -1742) saved region 6:7119 - closest 3' read 106562 ( -2684) 2690:7119 ( +0) search for confused edges: tig 1814 read 126584 pos 0-5377 IS confused by 5' edge to read 468163 - best edge read 106563 len 2761 erate 0.0234 score 2696.39 - alt edge len 664 erate 0.0245 score 647.73 - absdiff 2048.66 percdiff 122.5230 tig 1814 read 126583 pos 15-5371 NOT confused by 3' edge to read 468163 - best edge read 126584 len 5353 erate 0.0215 score 5237.91 - alt edge len 647 erate 0.0247 score 631.02 - absdiff 4606.89 percdiff 156.9926 tig 1814 read 106563 pos 2629-7113 IS confused by 3' edge to read 468163 - best edge read 106562 len 4446 erate 0.0238 score 4340.19 - alt edge len 2389 erate 0.0256 score 2327.84 - absdiff 2012.34 percdiff 60.3580 saved region 6:7119 - 2 best edges are potentially confused Annotating repeats in reads for tig 1816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1819/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1825/90584. Annotated with 76 overlaps. Scan reads to discard spanned repeats. discard region 24054:25503 - contained in read 458888 19845- 25756 thickest edges to the repeat regions: saved region 17842:21944 - closest read 444519 ( +2330) 15512:21953 ( +9) (contained) saved region 17842:21944 - closest 5' read 444519 ( +2330) 15512:21953 ( +9) saved region 17842:21944 - closest 3' read 444519 ( +2330) 15512:21953 ( +9) search for confused edges: tig 1825 read 377584 pos 17924-21943 NOT confused by 5' edge to read 116977 - best edge read 444519 len 4016 erate 0.0351 score 3875.04 - alt edge len 703 erate 0.0304 score 681.63 - absdiff 3193.41 percdiff 140.1643 tig 1825 read 458888 pos 19845-25756 IS confused by 5' edge to read 282966 - best edge read 444519 len 2067 erate 0.0416 score 1981.01 - alt edge len 799 erate 0.0305 score 774.63 - absdiff 1206.38 percdiff 87.5572 tig 1825 read 458888 pos 19845-25756 IS confused by 5' edge to read 282967 - best edge read 444519 len 2067 erate 0.0416 score 1981.01 - alt edge len 802 erate 0.0355 score 773.53 - absdiff 1207.48 percdiff 87.6722 tig 1825 read 458888 pos 19845-25756 IS confused by 5' edge to read 282969 - best edge read 444519 len 2067 erate 0.0416 score 1981.01 - alt edge len 787 erate 0.0336 score 760.56 - absdiff 1220.46 percdiff 89.0334 saved region 17842:21944 - 3 best edges are potentially confused break tig 1825 into up to 3 pieces: 0 17342 unique (length 17342) 17342 22444 repeat (length 5102) 22444 25756 unique (length 3312) Creating Unitig 90957 Creating Unitig 90958 Creating Unitig 90959 For tig 1825 unique region 0 17342 - 0/ 33 reads repeat/unique - unitig 90957 created. For tig 1825 repeat region 17342 22444 - 17/ 0 reads repeat/unique - unitig 90958 created. For tig 1825 unique region 22444 25756 - 0/ 9 reads repeat/unique - unitig 90959 created. Annotating repeats in reads for tig 1826/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 0:1765 - contained in read 205091 0- 9353 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1831/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9408 - closest 5' read 347046 ( +0) 0:7155 ( -2253) saved region 0:9408 - closest 3' read 198078 ( -2053) 2053:9408 ( +0) search for confused edges: tig 1831 read 347046 pos 0-7155 NOT confused by 3' edge to read 486071 - best edge read 498925 len 5356 erate 0.0247 score 5223.71 - alt edge len 2937 erate 0.0215 score 2873.85 - absdiff 2349.85 percdiff 58.0385 tig 1831 read 347046 pos 0-7155 NOT confused by 3' edge to read 486073 - best edge read 498925 len 5356 erate 0.0247 score 5223.71 - alt edge len 2932 erate 0.0235 score 2863.10 - absdiff 2360.61 percdiff 58.3817 tig 1831 read 498925 pos 1799-9363 NOT confused by 3' edge to read 486071 - best edge read 498926 len 7359 erate 0.0174 score 7230.95 - alt edge len 5173 erate 0.0139 score 5101.10 - absdiff 2129.86 percdiff 34.5418 tig 1831 read 498925 pos 1799-9363 NOT confused by 3' edge to read 486073 - best edge read 498926 len 7359 erate 0.0174 score 7230.95 - alt edge len 5168 erate 0.0159 score 5085.83 - absdiff 2145.12 percdiff 34.8325 tig 1831 read 498925 pos 1799-9363 NOT confused by 3' edge to read 486074 - best edge read 498926 len 7359 erate 0.0174 score 7230.95 - alt edge len 3277 erate 0.0186 score 3216.05 - absdiff 4014.91 percdiff 76.8624 tig 1831 read 498926 pos 2004-9395 IS confused by 3' edge to read 486071 - best edge read 198078 len 7342 erate 0.0185 score 7206.17 - alt edge len 5194 erate 0.0125 score 5129.07 - absdiff 2077.10 percdiff 33.6774 tig 1831 read 498926 pos 2004-9395 IS confused by 3' edge to read 486073 - best edge read 198078 len 7342 erate 0.0185 score 7206.17 - alt edge len 5189 erate 0.0143 score 5114.80 - absdiff 2091.38 percdiff 33.9482 tig 1831 read 498926 pos 2004-9395 NOT confused by 3' edge to read 486074 - best edge read 198078 len 7342 erate 0.0185 score 7206.17 - alt edge len 3291 erate 0.0185 score 3230.12 - absdiff 3976.06 percdiff 76.1967 saved region 0:9408 - 2 best edges are potentially confused Annotating repeats in reads for tig 1832/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 0:4290 - contained in read 323220 0- 4865 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1836/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 2230:6395 - contained in read 349401 37- 6395 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1841/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 10224:12636 - contained in read 411655 8635- 13231 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1844/90584. Annotated with 62 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9241:15636 - closest read 309529 ( +816) 8425:15670 ( +34) (contained) saved region 9241:15636 - closest read 309530 ( +797) 8444:15694 ( +58) (contained) saved region 9241:15636 - closest 5' read 309530 ( +797) 8444:15694 ( +58) saved region 9241:15636 - closest 3' read 309529 ( +816) 8425:15670 ( +34) saved region 17246:23880 - closest 5' read 294302 ( +5371) 11875:18321 ( -5559) saved region 17246:23880 - closest 3' read 140162 ( -3) 17249:23888 ( +8) search for confused edges: discard region 9241:15636 - no confusion in best edges discard region 17246:23880 - no confusion in best edges Annotating repeats in reads for tig 1850/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7182:12886 - closest read 420568 ( +1661) 5521:13184 ( +298) (contained) saved region 7182:12886 - closest read 420567 ( +1289) 5893:13192 ( +306) (contained) saved region 7182:12886 - closest read 420566 ( +1169) 6013:13149 ( +263) (contained) saved region 7182:12886 - closest read 420565 ( +11) 7171:13187 ( +301) (contained) saved region 7182:12886 - closest 5' read 420567 ( +1289) 5893:13192 ( +306) saved region 7182:12886 - closest 3' read 420568 ( +1661) 5521:13184 ( +298) search for confused edges: discard region 7182:12886 - no confusion in best edges Annotating repeats in reads for tig 1852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1853/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1854/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1856/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11349:13899 - closest read 432599 ( +3878) 7471:14116 ( +217) (contained) saved region 11349:13899 - closest read 448344 ( +6) 11343:13968 ( +69) (contained) saved region 11349:13899 - closest 5' read 432599 ( +3878) 7471:14116 ( +217) saved region 11349:13899 - closest 3' read 432599 ( +3878) 7471:14116 ( +217) search for confused edges: discard region 11349:13899 - no confusion in best edges Annotating repeats in reads for tig 1857/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 8795:7581 - contained in read 450459 5656- 11984 discard region 10540:12150 - contained in read 145681 5790- 12153 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1861/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 7706:4286 - contained in read 372503 0- 7565 discard region 11514:12287 - contained in read 208465 7408- 13055 discard region 12526:13176 - contained in read 365468 11663- 20694 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1863/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1870/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1871/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5459:6290 - closest 5' read 493486 ( +5406) 53:6014 ( -276) saved region 5459:6290 - closest 3' read 462158 ( -1) 5460:12116 ( +5826) search for confused edges: discard region 5459:6290 - no confusion in best edges Annotating repeats in reads for tig 1873/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 0:888 - contained in read 380301 0- 4744 discard region 8953:12896 - contained in read 487645 6190- 12896 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1874/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5603:7872 - contained in read 467224 2640- 8816 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1875/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 17548:18503 - contained in read 77071 15784- 24578 thickest edges to the repeat regions: saved region 11640:14374 - closest 5' read 118221 ( +1) 11639:13580 ( -794) saved region 11640:14374 - closest 3' read 507729 ( -1) 11641:18495 ( +4121) search for confused edges: discard region 11640:14374 - no confusion in best edges Annotating repeats in reads for tig 1877/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1878/90584. Annotated with 113 overlaps. Scan reads to discard spanned repeats. discard region 10071:11785 - contained in read 382564 6973- 11785 thickest edges to the repeat regions: saved region 3530:8845 - closest 5' read 150916 ( +757) 2773:8243 ( -602) saved region 3530:8845 - closest 3' read 382563 ( -3394) 6924:11368 ( +2523) search for confused edges: discard region 3530:8845 - no confusion in best edges Annotating repeats in reads for tig 1886/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1887/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2203:1246 - contained in read 481620 0- 8810 discard region 2530:4459 - contained in read 481620 0- 8810 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1890/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 0:7522 - contained in read 7899 0- 8914 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1894/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 19673:23997 - closest read 285825 ( +0) 19673:27245 ( +3248) (contained) saved region 19673:23997 - closest 5' read 285825 ( +0) 19673:27245 ( +3248) saved region 19673:23997 - closest 3' read 285825 ( +0) 19673:27245 ( +3248) search for confused edges: discard region 19673:23997 - no confusion in best edges Annotating repeats in reads for tig 1918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1919/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1925/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12260:16991 - closest read 439542 ( +418) 11842:18776 ( +1785) (contained) saved region 12260:16991 - closest read 113458 ( +358) 11902:18488 ( +1497) (contained) saved region 12260:16991 - closest read 279602 ( +240) 12020:17370 ( +379) (contained) saved region 12260:16991 - closest read 358452 ( +166) 12094:18186 ( +1195) (contained) saved region 12260:16991 - closest read 318188 ( +20) 12240:18728 ( +1737) (contained) saved region 12260:16991 - closest 5' read 439542 ( +418) 11842:18776 ( +1785) saved region 12260:16991 - closest 3' read 439542 ( +418) 11842:18776 ( +1785) search for confused edges: discard region 12260:16991 - no confusion in best edges Annotating repeats in reads for tig 1926/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 10:4694 - contained in read 519500 0- 8128 discard region 9883:7584 - contained in read 519500 0- 8128 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1934/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:3991 - closest read 375967 ( +0) 0:4122 ( +131) (contained) saved region 0:3991 - closest 5' read 375967 ( +0) 0:4122 ( +131) saved region 0:3991 - closest 3' read 375967 ( +0) 0:4122 ( +131) search for confused edges: discard region 0:3991 - no confusion in best edges Annotating repeats in reads for tig 1938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1939/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1942/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1335:658 - contained in read 352007 0- 9687 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1943/90584. Annotated with 133 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5348 - closest 5' read 125696 ( +0) 0:5237 ( -111) saved region 0:5348 - closest 3' read 223555 ( -1090) 1090:7117 ( +1769) saved region 5359:12339 - closest 5' read 389428 ( +3653) 1706:11183 ( -1156) saved region 5359:12339 - closest 3' read 429691 ( -1044) 6403:12339 ( +0) search for confused edges: tig 1943 read 125696 pos 0-5237 NOT confused by 5' edge to read 302323 - best edge read 223555 len 4055 erate 0.0339 score 3917.54 - alt edge len 1065 erate 0.0340 score 1028.79 - absdiff 2888.75 percdiff 116.8037 tig 1943 read 125696 pos 0-5237 IS confused by 5' edge to read 410201 - best edge read 223555 len 4055 erate 0.0339 score 3917.54 - alt edge len 3609 erate 0.0208 score 3533.93 - absdiff 383.60 percdiff 10.2960 saved region 0:5348 - 1 best edges are potentially confused discard region 5359:12339 - no confusion in best edges break tig 1943 into up to 2 pieces: 0 5848 repeat (length 5848) 5848 12339 unique (length 6491) Creating Unitig 90960 Creating Unitig 90961 For tig 1943 repeat region 0 5848 - 11/ 0 reads repeat/unique - unitig 90960 created. For tig 1943 unique region 5848 12339 - 0/ 24 reads repeat/unique - unitig 90961 created. Annotating repeats in reads for tig 1950/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 13:1851 - contained in read 433343 0- 6888 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1953/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1957/90584. Annotated with 46 overlaps. Scan reads to discard spanned repeats. discard region 2295:7648 - contained in read 377859 81- 11007 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1960/90584. Annotated with 73 overlaps. Scan reads to discard spanned repeats. discard region 1458:2754 - contained in read 217511 0- 5478 thickest edges to the repeat regions: saved region 3899:5483 - closest 5' read 217511 ( +3899) 0:5478 ( -5) saved region 3899:5483 - closest 3' read 405514 ( -6) 3905:5489 ( +6) search for confused edges: discard region 3899:5483 - no confusion in best edges Annotating repeats in reads for tig 1961/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7587:10957 - contained in read 172783 2114- 11636 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1962/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 773:1809 - contained in read 431443 0- 10732 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1970/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 2626:7298 - contained in read 316353 0- 10952 discard region 7285:9561 - contained in read 316353 0- 10952 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1976/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6051:6905 - contained in read 458828 59- 6905 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1984/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1004:5573 - contained in read 335101 368- 6866 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1986/90584. Annotated with 56 overlaps. Scan reads to discard spanned repeats. discard region 0:4535 - contained in read 466274 0- 6389 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1987/90584. Annotated with 69 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5639:11666 - closest 5' read 467612 ( +5633) 6:6722 ( -4944) saved region 5639:11666 - closest 3' read 154378 ( -4256) 9895:14032 ( +2366) search for confused edges: tig 1987 read 467608 pos 103-6718 IS confused by 5' edge to read 412811 - best edge read 43093 len 765 erate 0.0353 score 738.00 - alt edge len 534 erate 0.0244 score 520.97 - absdiff 217.03 percdiff 34.4767 tig 1987 read 43093 pos 5953-11587 NOT confused by 5' edge to read 37130 - best edge read 43092 len 5602 erate 0.0165 score 5509.57 - alt edge len 1100 erate 0.0282 score 1068.98 - absdiff 4440.59 percdiff 135.0021 tig 1987 read 43093 pos 5953-11587 NOT confused by 5' edge to read 50143 - best edge read 43092 len 5602 erate 0.0165 score 5509.57 - alt edge len 784 erate 0.0411 score 751.78 - absdiff 4757.79 percdiff 151.9734 tig 1987 read 43093 pos 5953-11587 NOT confused by 5' edge to read 102403 - best edge read 43092 len 5602 erate 0.0165 score 5509.57 - alt edge len 1172 erate 0.0354 score 1130.51 - absdiff 4379.06 percdiff 131.8977 tig 1987 read 43093 pos 5953-11587 NOT confused by 5' edge to read 102405 - best edge read 43092 len 5602 erate 0.0165 score 5509.57 - alt edge len 1109 erate 0.0380 score 1066.86 - absdiff 4442.71 percdiff 135.1102 tig 1987 read 43093 pos 5953-11587 NOT confused by 5' edge to read 102406 - best edge read 43092 len 5602 erate 0.0165 score 5509.57 - alt edge len 1202 erate 0.0277 score 1168.70 - absdiff 4340.86 percdiff 129.9996 tig 1987 read 43092 pos 5985-11664 IS confused by 3' edge to read 37130 - best edge read 154378 len 1769 erate 0.0406 score 1697.18 - alt edge len 1156 erate 0.0191 score 1133.92 - absdiff 563.26 percdiff 39.7908 tig 1987 read 43092 pos 5985-11664 IS confused by 5' edge to read 43095 - best edge read 43093 len 5625 erate 0.0165 score 5532.19 - alt edge len 5592 erate 0.0177 score 5493.02 - absdiff 39.17 percdiff 0.7105 tig 1987 read 43092 pos 5985-11664 IS confused by 3' edge to read 50143 - best edge read 154378 len 1769 erate 0.0406 score 1697.18 - alt edge len 840 erate 0.0348 score 810.77 - absdiff 886.41 percdiff 70.6882 tig 1987 read 43092 pos 5985-11664 IS confused by 3' edge to read 102403 - best edge read 154378 len 1769 erate 0.0406 score 1697.18 - alt edge len 1229 erate 0.0314 score 1190.41 - absdiff 506.77 percdiff 35.0998 tig 1987 read 43092 pos 5985-11664 IS confused by 3' edge to read 102405 - best edge read 154378 len 1769 erate 0.0406 score 1697.18 - alt edge len 1165 erate 0.0337 score 1125.74 - absdiff 571.44 percdiff 40.4857 tig 1987 read 43092 pos 5985-11664 IS confused by 3' edge to read 102406 - best edge read 154378 len 1769 erate 0.0406 score 1697.18 - alt edge len 1259 erate 0.0257 score 1226.64 - absdiff 470.53 percdiff 32.1863 tig 1987 read 43092 pos 5985-11664 IS confused by 3' edge to read 454693 - best edge read 154378 len 1769 erate 0.0406 score 1697.18 - alt edge len 535 erate 0.0338 score 516.92 - absdiff 1180.26 percdiff 106.6134 tig 1987 read 154378 pos 9895-14032 IS confused by 5' edge to read 32576 - best edge read 43092 len 1753 erate 0.0406 score 1681.83 - alt edge len 1669 erate 0.0372 score 1606.91 - absdiff 74.92 percdiff 4.5558 tig 1987 read 154378 pos 9895-14032 IS confused by 5' edge to read 43095 - best edge read 43092 len 1753 erate 0.0406 score 1681.83 - alt edge len 1679 erate 0.0328 score 1623.93 - absdiff 57.90 percdiff 3.5029 tig 1987 read 154378 pos 9895-14032 IS confused by 5' edge to read 433829 - best edge read 43092 len 1753 erate 0.0406 score 1681.83 - alt edge len 1247 erate 0.0346 score 1203.85 - absdiff 477.97 percdiff 33.1273 saved region 5639:11666 - 11 best edges are potentially confused break tig 1987 into up to 3 pieces: 0 5139 unique (length 5139) 5139 12166 repeat (length 7027) 12166 16446 unique (length 4280) Creating Unitig 90962 Creating Unitig 90963 Creating Unitig 90964 For tig 1987 unique region 0 5139 - 0/ 6 reads repeat/unique - unitig 90962 created. For tig 1987 repeat region 5139 12166 - 6/ 0 reads repeat/unique - unitig 90963 created. For tig 1987 unique region 12166 16446 - 0/ 8 reads repeat/unique - unitig 90964 created. Annotating repeats in reads for tig 1990/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 0:3909 - contained in read 468519 0- 6223 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1993/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:5463 - contained in read 48495 0- 8465 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 1994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2011/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 291:797 - contained in read 522105 0- 9038 discard region 1382:4650 - contained in read 522105 0- 9038 discard region 4898:6285 - contained in read 522105 0- 9038 discard region 7330:6296 - contained in read 522105 0- 9038 discard region 7382:6849 - contained in read 522105 0- 9038 thickest edges to the repeat regions: saved region 7734:10890 - closest 5' read 453709 ( +5759) 1975:10840 ( -50) saved region 7734:10890 - closest 3' read 480624 ( -864) 8598:13384 ( +2494) search for confused edges: discard region 7734:10890 - no confusion in best edges Annotating repeats in reads for tig 2012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2017/90584. Annotated with 274 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6895:27001 - closest 5' read 339361 ( +1322) 5573:11574 (-15427) saved region 6895:27001 - closest 3' read 184797 (-15209) 22104:27273 ( +272) search for confused edges: tig 2017 read 485183 pos 9094-19206 NOT confused by 3' edge to read 90175 - best edge read 491207 len 8499 erate 0.0058 score 8449.71 - alt edge len 4371 erate 0.0144 score 4308.06 - absdiff 4141.65 percdiff 64.9275 tig 2017 read 491207 pos 10707-20624 NOT confused by 5' edge to read 59780 - best edge read 520198 len 9294 erate 0.0041 score 9255.89 - alt edge len 747 erate 0.0054 score 742.97 - absdiff 8512.93 percdiff 170.2780 tig 2017 read 491207 pos 10707-20624 NOT confused by 5' edge to read 90175 - best edge read 520198 len 9294 erate 0.0041 score 9255.89 - alt edge len 2144 erate 0.0112 score 2119.99 - absdiff 7135.91 percdiff 125.4568 tig 2017 read 520198 pos 11330-21494 NOT confused by 3' edge to read 59780 - best edge read 200394 len 7064 erate 0.0081 score 7006.78 - alt edge len 1621 erate 0.0130 score 1599.93 - absdiff 5406.85 percdiff 125.6428 tig 2017 read 520198 pos 11330-21494 NOT confused by 3' edge to read 90175 - best edge read 200394 len 7064 erate 0.0081 score 7006.78 - alt edge len 3016 erate 0.0136 score 2974.98 - absdiff 4031.80 percdiff 80.7833 tig 2017 read 520198 pos 11330-21494 NOT confused by 3' edge to read 294267 - best edge read 200394 len 7064 erate 0.0081 score 7006.78 - alt edge len 798 erate 0.0351 score 769.99 - absdiff 6236.79 percdiff 160.3954 tig 2017 read 200394 pos 14430-25125 IS confused by 5' edge to read 59780 - best edge read 90175 len 3000 erate 0.0224 score 2932.80 - alt edge len 1613 erate 0.0212 score 1578.80 - absdiff 1354.00 percdiff 60.0228 tig 2017 read 200394 pos 14430-25125 NOT confused by 3' edge to read 339361 - best edge read 485183 len 8428 erate 0.0077 score 8363.10 - alt edge len 793 erate 0.0140 score 781.90 - absdiff 7581.21 percdiff 165.8000 tig 2017 read 200394 pos 14430-25125 NOT confused by 3' edge to read 339362 - best edge read 485183 len 8428 erate 0.0077 score 8363.10 - alt edge len 787 erate 0.0343 score 760.01 - absdiff 7603.10 percdiff 166.6778 tig 2017 read 485182 pos 14480-25050 NOT confused by 5' edge to read 59780 - best edge read 200394 len 6978 erate 0.0080 score 6922.18 - alt edge len 1534 erate 0.0091 score 1520.04 - absdiff 5402.14 percdiff 127.9791 tig 2017 read 485182 pos 14480-25050 NOT confused by 5' edge to read 294267 - best edge read 200394 len 6978 erate 0.0080 score 6922.18 - alt edge len 708 erate 0.0313 score 685.84 - absdiff 6236.34 percdiff 163.9412 tig 2017 read 485182 pos 14480-25050 NOT confused by 3' edge to read 339361 - best edge read 485183 len 8380 erate 0.0060 score 8329.72 - alt edge len 738 erate 0.0123 score 728.92 - absdiff 7600.80 percdiff 167.8132 tig 2017 read 485182 pos 14480-25050 NOT confused by 3' edge to read 339362 - best edge read 485183 len 8380 erate 0.0060 score 8329.72 - alt edge len 732 erate 0.0287 score 710.99 - absdiff 7618.73 percdiff 168.5427 saved region 6895:27001 - 1 best edges are potentially confused break tig 2017 into up to 3 pieces: 0 6395 unique (length 6395) 6395 27501 repeat (length 21106) 27501 28535 unique (length 1034) Creating Unitig 90965 Creating Unitig 90966 Creating Unitig 90967 For tig 2017 unique region 0 6395 - 0/ 5 reads repeat/unique - unitig 90965 created. For tig 2017 repeat region 6395 27501 - 81/ 0 reads repeat/unique - unitig 90966 created. For tig 2017 unique region 27501 28535 - 0/ 1 reads repeat/unique - unitig 90967 created. Annotating repeats in reads for tig 2020/90584. Annotated with 330 overlaps. Scan reads to discard spanned repeats. discard region 1463:2692 - contained in read 487141 0- 4694 thickest edges to the repeat regions: saved region 2767:16059 - closest 5' read 459819 ( +2752) 15:12193 ( -3866) saved region 2767:16059 - closest 3' read 370295 ( -2839) 5606:16059 ( +0) search for confused edges: tig 2020 read 459819 pos 15-12193 NOT confused by 5' edge to read 409373 - best edge read 95724 len 8479 erate 0.0171 score 8334.01 - alt edge len 2428 erate 0.0186 score 2382.84 - absdiff 5951.17 percdiff 111.0619 tig 2020 read 459819 pos 15-12193 NOT confused by 5' edge to read 409374 - best edge read 95724 len 8479 erate 0.0171 score 8334.01 - alt edge len 2399 erate 0.0243 score 2340.70 - absdiff 5993.30 percdiff 112.2898 tig 2020 read 95724 pos 3714-15355 NOT confused by 3' edge to read 31753 - best edge read 370295 len 9749 erate 0.0282 score 9474.08 - alt edge len 3093 erate 0.0365 score 2980.11 - absdiff 6493.97 percdiff 104.2858 tig 2020 read 95724 pos 3714-15355 NOT confused by 3' edge to read 261237 - best edge read 370295 len 9749 erate 0.0282 score 9474.08 - alt edge len 2869 erate 0.0383 score 2759.12 - absdiff 6714.96 percdiff 109.7826 tig 2020 read 95724 pos 3714-15355 NOT confused by 3' edge to read 326003 - best edge read 370295 len 9749 erate 0.0282 score 9474.08 - alt edge len 2860 erate 0.0350 score 2759.90 - absdiff 6714.18 percdiff 109.7628 tig 2020 read 95724 pos 3714-15355 NOT confused by 3' edge to read 358859 - best edge read 370295 len 9749 erate 0.0282 score 9474.08 - alt edge len 3048 erate 0.0259 score 2969.06 - absdiff 6505.02 percdiff 104.5560 tig 2020 read 95724 pos 3714-15355 NOT confused by 3' edge to read 358861 - best edge read 370295 len 9749 erate 0.0282 score 9474.08 - alt edge len 3047 erate 0.0368 score 2934.87 - absdiff 6539.21 percdiff 105.3950 tig 2020 read 95724 pos 3714-15355 NOT confused by 3' edge to read 358862 - best edge read 370295 len 9749 erate 0.0282 score 9474.08 - alt edge len 3049 erate 0.0354 score 2941.07 - absdiff 6533.01 percdiff 105.2426 tig 2020 read 95724 pos 3714-15355 NOT confused by 3' edge to read 405602 - best edge read 370295 len 9749 erate 0.0282 score 9474.08 - alt edge len 2941 erate 0.0289 score 2856.01 - absdiff 6618.07 percdiff 107.3484 tig 2020 read 95724 pos 3714-15355 NOT confused by 3' edge to read 460468 - best edge read 370295 len 9749 erate 0.0282 score 9474.08 - alt edge len 2290 erate 0.0358 score 2208.02 - absdiff 7266.06 percdiff 124.3965 tig 2020 read 95724 pos 3714-15355 NOT confused by 3' edge to read 460469 - best edge read 370295 len 9749 erate 0.0282 score 9474.08 - alt edge len 2291 erate 0.0367 score 2206.92 - absdiff 7267.16 percdiff 124.4270 discard region 2767:16059 - no confusion in best edges Annotating repeats in reads for tig 2029/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2723:11899 - closest 5' read 494627 ( +2679) 44:5553 ( -6346) saved region 2723:11899 - closest 3' read 338340 ( -15) 2738:11899 ( +0) search for confused edges: tig 2029 read 494626 pos 2-5542 IS confused by 3' edge to read 962 - best edge read 338340 len 2804 erate 0.0230 score 2739.51 - alt edge len 2050 erate 0.0205 score 2007.98 - absdiff 731.53 percdiff 30.8177 tig 2029 read 494626 pos 2-5542 IS confused by 3' edge to read 213219 - best edge read 338340 len 2804 erate 0.0230 score 2739.51 - alt edge len 1097 erate 0.0219 score 1072.98 - absdiff 1666.53 percdiff 87.4250 tig 2029 read 494626 pos 2-5542 IS confused by 3' edge to read 213220 - best edge read 338340 len 2804 erate 0.0230 score 2739.51 - alt edge len 1086 erate 0.0203 score 1063.95 - absdiff 1675.55 percdiff 88.1068 tig 2029 read 494626 pos 2-5542 IS confused by 3' edge to read 213222 - best edge read 338340 len 2804 erate 0.0230 score 2739.51 - alt edge len 1087 erate 0.0184 score 1067.00 - absdiff 1672.51 percdiff 87.8763 tig 2029 read 494626 pos 2-5542 IS confused by 3' edge to read 309700 - best edge read 338340 len 2804 erate 0.0230 score 2739.51 - alt edge len 2552 erate 0.0350 score 2462.68 - absdiff 276.83 percdiff 10.6428 tig 2029 read 494626 pos 2-5542 IS confused by 3' edge to read 309701 - best edge read 338340 len 2804 erate 0.0230 score 2739.51 - alt edge len 2348 erate 0.0300 score 2277.56 - absdiff 461.95 percdiff 18.4151 saved region 2723:11899 - 6 best edges are potentially confused break tig 2029 into up to 2 pieces: 0 2223 unique (length 2223) 2223 11899 repeat (length 9676) Creating Unitig 90968 Creating Unitig 90969 For tig 2029 unique region 0 2223 - 0/ 4 reads repeat/unique - unitig 90968 created. For tig 2029 repeat region 2223 11899 - 2/ 0 reads repeat/unique - unitig 90969 created. Annotating repeats in reads for tig 2030/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 4690:5976 - contained in read 494738 0- 6692 thickest edges to the repeat regions: saved region 7602:11041 - closest read 171664 ( +4114) 3488:11071 ( +30) (contained) saved region 7602:11041 - closest read 529913 ( +4057) 3545:11065 ( +24) (contained) saved region 7602:11041 - closest read 221955 ( +1935) 5667:11335 ( +294) (contained) saved region 7602:11041 - closest read 391629 ( +488) 7114:11051 ( +10) (contained) saved region 7602:11041 - closest 5' read 221955 ( +1935) 5667:11335 ( +294) saved region 7602:11041 - closest 3' read 171664 ( +4114) 3488:11071 ( +30) saved region 12459:17735 - closest 5' read 370418 ( +4204) 8255:13065 ( -4670) saved region 12459:17735 - closest 3' read 444240 ( -20) 12479:19313 ( +1578) search for confused edges: discard region 7602:11041 - no confusion in best edges discard region 12459:17735 - no confusion in best edges Annotating repeats in reads for tig 2031/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2503:0 - contained in read 60378 0- 5803 discard region 6052:6966 - contained in read 398481 4450- 10497 thickest edges to the repeat regions: saved region 9570:10496 - closest read 398481 ( +5120) 4450:10497 ( +1) (contained) saved region 9570:10496 - closest 5' read 398481 ( +5120) 4450:10497 ( +1) saved region 9570:10496 - closest 3' read 398481 ( +5120) 4450:10497 ( +1) search for confused edges: discard region 9570:10496 - no confusion in best edges Annotating repeats in reads for tig 2035/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2043/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5618:12535 - closest 5' read 399072 ( +0) 5618:11092 ( -1443) saved region 5618:12535 - closest 3' read 147306 ( -307) 5925:13563 ( +1028) search for confused edges: tig 2043 read 464130 pos 4613-7262 IS confused by 3' edge to read 375212 - best edge read 197286 len 1642 erate 0.0246 score 1601.61 - alt edge len 1206 erate 0.0382 score 1159.93 - absdiff 441.68 percdiff 31.9877 tig 2043 read 197286 pos 5620-12420 NOT confused by 3' edge to read 76632 - best edge read 454360 len 6784 erate 0.0261 score 6606.94 - alt edge len 1459 erate 0.0316 score 1412.90 - absdiff 5194.04 percdiff 129.5299 tig 2043 read 197286 pos 5620-12420 NOT confused by 3' edge to read 76634 - best edge read 454360 len 6784 erate 0.0261 score 6606.94 - alt edge len 1457 erate 0.0296 score 1413.87 - absdiff 5193.06 percdiff 129.4898 tig 2043 read 197286 pos 5620-12420 NOT confused by 3' edge to read 76636 - best edge read 454360 len 6784 erate 0.0261 score 6606.94 - alt edge len 1464 erate 0.0281 score 1422.86 - absdiff 5184.08 percdiff 129.1209 tig 2043 read 454360 pos 5636-12456 NOT confused by 3' edge to read 76632 - best edge read 18408 len 6738 erate 0.0186 score 6612.67 - alt edge len 1462 erate 0.0253 score 1425.01 - absdiff 5187.66 percdiff 129.0835 tig 2043 read 454360 pos 5636-12456 NOT confused by 3' edge to read 76634 - best edge read 18408 len 6738 erate 0.0186 score 6612.67 - alt edge len 1460 erate 0.0212 score 1429.05 - absdiff 5183.63 percdiff 128.9183 tig 2043 read 454360 pos 5636-12456 NOT confused by 3' edge to read 76636 - best edge read 18408 len 6738 erate 0.0186 score 6612.67 - alt edge len 1467 erate 0.0225 score 1433.99 - absdiff 5178.68 percdiff 128.7162 tig 2043 read 18408 pos 5718-12436 NOT confused by 3' edge to read 76632 - best edge read 147306 len 6511 erate 0.0175 score 6397.06 - alt edge len 1476 erate 0.0231 score 1441.90 - absdiff 4955.15 percdiff 126.4237 tig 2043 read 18408 pos 5718-12436 NOT confused by 3' edge to read 76634 - best edge read 147306 len 6511 erate 0.0175 score 6397.06 - alt edge len 1474 erate 0.0197 score 1444.96 - absdiff 4952.10 percdiff 126.2964 tig 2043 read 18408 pos 5718-12436 NOT confused by 3' edge to read 76636 - best edge read 147306 len 6511 erate 0.0175 score 6397.06 - alt edge len 1481 erate 0.0210 score 1449.90 - absdiff 4947.16 percdiff 126.0911 tig 2043 read 18408 pos 5718-12436 NOT confused by 5' edge to read 259342 - best edge read 454360 len 6715 erate 0.0186 score 6590.10 - alt edge len 3679 erate 0.0435 score 3518.96 - absdiff 3071.14 percdiff 60.7601 tig 2043 read 18408 pos 5718-12436 NOT confused by 5' edge to read 483890 - best edge read 454360 len 6715 erate 0.0186 score 6590.10 - alt edge len 668 erate 0.0375 score 642.95 - absdiff 5947.15 percdiff 164.4438 saved region 5618:12535 - 1 best edges are potentially confused break tig 2043 into up to 3 pieces: 0 5118 unique (length 5118) 5118 13035 repeat (length 7917) 13035 13563 unique (length 528) Creating Unitig 90970 Creating Unitig 90971 Creating Unitig 90972 For tig 2043 unique region 0 5118 - 0/ 10 reads repeat/unique - unitig 90970 created. For tig 2043 repeat region 5118 13035 - 64/ 0 reads repeat/unique - unitig 90971 created. For tig 2043 unique region 13035 13563 - 0/ 3 reads repeat/unique - unitig 90972 created. Annotating repeats in reads for tig 2045/90584. Annotated with 52 overlaps. Scan reads to discard spanned repeats. discard region 5511:8067 - contained in read 150725 469- 8067 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2047/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 2474:3579 - contained in read 505205 0- 5479 thickest edges to the repeat regions: saved region 6030:12920 - closest 5' read 267901 ( +2230) 3800:8627 ( -4293) saved region 6030:12920 - closest 3' read 245279 ( -94) 6124:12922 ( +2) search for confused edges: discard region 6030:12920 - no confusion in best edges Annotating repeats in reads for tig 2053/90584. Annotated with 453 overlaps. Scan reads to discard spanned repeats. discard region 0:547 - contained in read 509280 0- 6451 discard region 1660:7061 - contained in read 443335 1140- 7061 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2054/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 0:4351 - contained in read 230605 0- 8894 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2057/90584. Annotated with 173 overlaps. Scan reads to discard spanned repeats. discard region 1090:3595 - contained in read 514951 460- 3595 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2058/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:2746 - contained in read 242848 0- 6770 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2061/90584. Annotated with 434 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9227 - closest 5' read 516113 ( +0) 0:8019 ( -1208) saved region 0:9227 - closest 3' read 361409 ( -916) 916:9227 ( +0) search for confused edges: tig 2061 read 516113 pos 0-8019 NOT confused by 3' edge to read 1635 - best edge read 361410 len 7104 erate 0.0355 score 6851.81 - alt edge len 1507 erate 0.0439 score 1440.84 - absdiff 5410.97 percdiff 130.5003 tig 2061 read 516113 pos 0-8019 NOT confused by 3' edge to read 7516 - best edge read 361410 len 7104 erate 0.0355 score 6851.81 - alt edge len 1855 erate 0.0275 score 1803.99 - absdiff 5047.82 percdiff 116.6345 tig 2061 read 516113 pos 0-8019 IS confused by 3' edge to read 71581 - best edge read 361410 len 7104 erate 0.0355 score 6851.81 - alt edge len 6155 erate 0.0303 score 5968.50 - absdiff 883.30 percdiff 13.7798 tig 2061 read 516113 pos 0-8019 IS confused by 3' edge to read 128987 - best edge read 361410 len 7104 erate 0.0355 score 6851.81 - alt edge len 6898 erate 0.0244 score 6729.69 - absdiff 122.12 percdiff 1.7983 tig 2061 read 516113 pos 0-8019 IS confused by 3' edge to read 393704 - best edge read 361410 len 7104 erate 0.0355 score 6851.81 - alt edge len 6749 erate 0.0288 score 6554.63 - absdiff 297.18 percdiff 4.4334 tig 2061 read 516113 pos 0-8019 NOT confused by 3' edge to read 451255 - best edge read 361410 len 7104 erate 0.0355 score 6851.81 - alt edge len 4067 erate 0.0263 score 3960.04 - absdiff 2891.77 percdiff 53.4926 tig 2061 read 361410 pos 915-8687 NOT confused by 5' edge to read 7516 - best edge read 361409 len 7771 erate 0.0286 score 7548.75 - alt edge len 5200 erate 0.0379 score 5002.92 - absdiff 2545.83 percdiff 40.5656 tig 2061 read 361410 pos 915-8687 IS confused by 5' edge to read 71581 - best edge read 361409 len 7771 erate 0.0286 score 7548.75 - alt edge len 6819 erate 0.0358 score 6574.88 - absdiff 973.87 percdiff 13.7906 tig 2061 read 361410 pos 915-8687 IS confused by 5' edge to read 128987 - best edge read 361409 len 7771 erate 0.0286 score 7548.75 - alt edge len 7553 erate 0.0298 score 7327.92 - absdiff 220.83 percdiff 2.9688 tig 2061 read 361410 pos 915-8687 IS confused by 5' edge to read 393704 - best edge read 361409 len 7771 erate 0.0286 score 7548.75 - alt edge len 7412 erate 0.0358 score 7146.65 - absdiff 402.10 percdiff 5.4724 tig 2061 read 361410 pos 915-8687 NOT confused by 5' edge to read 451255 - best edge read 361409 len 7771 erate 0.0286 score 7548.75 - alt edge len 4757 erate 0.0360 score 4585.75 - absdiff 2963.00 percdiff 48.8360 tig 2061 read 361409 pos 916-9227 NOT confused by 5' edge to read 474426 - best edge read 361410 len 7821 erate 0.0286 score 7597.32 - alt edge len 3887 erate 0.0386 score 3736.96 - absdiff 3860.36 percdiff 68.1183 tig 2061 read 361409 pos 916-9227 NOT confused by 5' edge to read 474427 - best edge read 361410 len 7821 erate 0.0286 score 7597.32 - alt edge len 3906 erate 0.0387 score 3754.84 - absdiff 3842.48 percdiff 67.6961 saved region 0:9227 - 6 best edges are potentially confused Annotating repeats in reads for tig 2064/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 886:5460 - contained in read 281438 0- 7206 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2069/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4233:6342 - contained in read 379470 113- 6342 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2078/90584. Annotated with 71 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8052:11844 - closest 5' read 322547 ( +4147) 3905:9782 ( -2062) saved region 8052:11844 - closest 3' read 292182 ( -1) 8053:12460 ( +616) search for confused edges: tig 2078 read 322546 pos 3783-9757 IS confused by 3' edge to read 155622 - best edge read 292182 len 1704 erate 0.0264 score 1659.01 - alt edge len 1378 erate 0.0319 score 1334.04 - absdiff 324.97 percdiff 21.7151 tig 2078 read 322546 pos 3783-9757 IS confused by 3' edge to read 199138 - best edge read 292182 len 1704 erate 0.0264 score 1659.01 - alt edge len 1703 erate 0.0317 score 1649.01 - absdiff 10.00 percdiff 0.6046 tig 2078 read 322546 pos 3783-9757 IS confused by 3' edge to read 312157 - best edge read 292182 len 1704 erate 0.0264 score 1659.01 - alt edge len 1640 erate 0.0372 score 1578.99 - absdiff 80.02 percdiff 4.9427 tig 2078 read 322546 pos 3783-9757 IS confused by 3' edge to read 402548 - best edge read 292182 len 1704 erate 0.0264 score 1659.01 - alt edge len 1700 erate 0.0247 score 1658.01 - absdiff 1.00 percdiff 0.0606 tig 2078 read 322546 pos 3783-9757 IS confused by 3' edge to read 466417 - best edge read 292182 len 1704 erate 0.0264 score 1659.01 - alt edge len 1703 erate 0.0282 score 1654.98 - absdiff 4.04 percdiff 0.2438 saved region 8052:11844 - 5 best edges are potentially confused break tig 2078 into up to 3 pieces: 0 7552 unique (length 7552) 7552 12344 repeat (length 4792) 12344 15008 unique (length 2664) Creating Unitig 90973 Creating Unitig 90974 Creating Unitig 90975 For tig 2078 unique region 0 7552 - 0/ 12 reads repeat/unique - unitig 90973 created. For tig 2078 repeat region 7552 12344 - 3/ 0 reads repeat/unique - unitig 90975 created. For tig 2078 unique region 12344 15008 - 0/ 5 reads repeat/unique - unitig 90974 created. Annotating repeats in reads for tig 2080/90584. Annotated with 876 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8110:12315 - closest 5' read 420498 ( +1345) 6765:12267 ( -48) saved region 8110:12315 - closest 3' read 470780 ( -1609) 9719:12469 ( +154) search for confused edges: discard region 8110:12315 - no confusion in best edges Annotating repeats in reads for tig 2081/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 3526:6957 - contained in read 1960 1732- 6969 thickest edges to the repeat regions: saved region 0:3512 - closest 5' read 276662 ( +0) 0:3477 ( -35) saved region 0:3512 - closest 3' read 515996 ( -571) 571:4363 ( +851) search for confused edges: discard region 0:3512 - no confusion in best edges Annotating repeats in reads for tig 2082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2083/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 11506:16030 - contained in read 125060 9394- 19365 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2084/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2086/90584. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 3822:9877 - contained in read 124647 1681- 9877 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2087/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2088/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 12481:14298 - contained in read 435489 6682- 15363 discard region 15807:17184 - contained in read 61823 10584- 18060 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2089/90584. Annotated with 67 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1880:9210 - closest 5' read 400693 ( +138) 1742:8089 ( -1121) saved region 1880:9210 - closest 3' read 347199 ( -377) 2257:9219 ( +9) search for confused edges: discard region 1880:9210 - no confusion in best edges Annotating repeats in reads for tig 2090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2092/90584. Annotated with 66 overlaps. Scan reads to discard spanned repeats. discard region 7316:12724 - contained in read 103789 4263- 12724 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2093/90584. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 0:852 - contained in read 323827 0- 4922 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2097/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1906:797 - contained in read 376619 0- 5879 thickest edges to the repeat regions: saved region 2255:6411 - closest read 313891 ( +1035) 1220:6463 ( +52) (contained) saved region 2255:6411 - closest 5' read 313891 ( +1035) 1220:6463 ( +52) saved region 2255:6411 - closest 3' read 313891 ( +1035) 1220:6463 ( +52) search for confused edges: discard region 2255:6411 - no confusion in best edges Annotating repeats in reads for tig 2098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2099/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2103/90584. Annotated with 342 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4288:11895 - closest 5' read 430319 ( +2261) 2027:10449 ( -1446) saved region 4288:11895 - closest 3' read 160090 ( -85) 4373:13354 ( +1459) search for confused edges: tig 2103 read 441978 pos 1165-10100 NOT confused by 5' edge to read 266667 - best edge read 160090 len 5727 erate 0.0275 score 5569.51 - alt edge len 2216 erate 0.0371 score 2133.79 - absdiff 3435.72 percdiff 89.2014 tig 2103 read 441978 pos 1165-10100 NOT confused by 5' edge to read 266669 - best edge read 160090 len 5727 erate 0.0275 score 5569.51 - alt edge len 2232 erate 0.0211 score 2184.90 - absdiff 3384.60 percdiff 87.2949 tig 2103 read 441978 pos 1165-10100 NOT confused by 5' edge to read 441535 - best edge read 160090 len 5727 erate 0.0275 score 5569.51 - alt edge len 1187 erate 0.0211 score 1161.95 - absdiff 4407.55 percdiff 130.9538 tig 2103 read 441978 pos 1165-10100 NOT confused by 5' edge to read 441539 - best edge read 160090 len 5727 erate 0.0275 score 5569.51 - alt edge len 1253 erate 0.0240 score 1222.93 - absdiff 4346.58 percdiff 127.9829 tig 2103 read 441978 pos 1165-10100 NOT confused by 5' edge to read 468531 - best edge read 160090 len 5727 erate 0.0275 score 5569.51 - alt edge len 2294 erate 0.0249 score 2236.88 - absdiff 3332.63 percdiff 85.3821 tig 2103 read 441978 pos 1165-10100 NOT confused by 5' edge to read 468533 - best edge read 160090 len 5727 erate 0.0275 score 5569.51 - alt edge len 2329 erate 0.0193 score 2284.05 - absdiff 3285.46 percdiff 83.6680 tig 2103 read 441978 pos 1165-10100 NOT confused by 5' edge to read 468535 - best edge read 160090 len 5727 erate 0.0275 score 5569.51 - alt edge len 2335 erate 0.0167 score 2296.01 - absdiff 3273.50 percdiff 83.2368 tig 2103 read 441978 pos 1165-10100 NOT confused by 5' edge to read 468536 - best edge read 160090 len 5727 erate 0.0275 score 5569.51 - alt edge len 2311 erate 0.0201 score 2264.55 - absdiff 3304.96 percdiff 84.3741 tig 2103 read 441978 pos 1165-10100 IS confused by 5' edge to read 520468 - best edge read 160090 len 5727 erate 0.0275 score 5569.51 - alt edge len 4420 erate 0.0147 score 4355.03 - absdiff 1214.48 percdiff 24.4743 saved region 4288:11895 - 1 best edges are potentially confused break tig 2103 into up to 3 pieces: 0 3788 unique (length 3788) 3788 12395 repeat (length 8607) 12395 18543 unique (length 6148) Creating Unitig 90976 Creating Unitig 90977 Creating Unitig 90978 For tig 2103 unique region 0 3788 - 0/ 10 reads repeat/unique - unitig 90976 created. For tig 2103 repeat region 3788 12395 - 93/ 0 reads repeat/unique - unitig 90977 created. For tig 2103 unique region 12395 18543 - 0/ 10 reads repeat/unique - unitig 90978 created. Annotating repeats in reads for tig 2104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2106/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 19597:21775 - contained in read 97272 6423- 24847 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2107/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 8335:9719 - contained in read 498586 2086- 11638 discard region 12553:16659 - contained in read 392430 8521- 16659 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2110/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2112/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2113/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11582:10564 - contained in read 413979 5671- 11588 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2114/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 4853:6036 - contained in read 240436 3501- 6925 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2115/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 17:754 - contained in read 162911 0- 8717 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2117/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 7:1470 - contained in read 154158 0- 6914 discard region 2653:3986 - contained in read 154158 0- 6914 discard region 5277:6954 - contained in read 280049 2512- 11712 thickest edges to the repeat regions: saved region 8327:16308 - closest 5' read 396117 ( +314) 8013:15871 ( -437) saved region 8327:16308 - closest 3' read 71790 ( -714) 9041:16466 ( +158) search for confused edges: discard region 8327:16308 - no confusion in best edges Annotating repeats in reads for tig 2118/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2120/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2126/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 4:1568 - contained in read 23108 0- 7048 thickest edges to the repeat regions: saved region 2717:7201 - closest 5' read 359004 ( +1098) 1619:7188 ( -13) saved region 2717:7201 - closest 3' read 514740 ( -216) 2933:7248 ( +47) search for confused edges: tig 2126 read 289681 pos 3862-10256 IS confused by 3' edge to read 87037 - best edge read 316557 len 3318 erate 0.0353 score 3200.87 - alt edge len 2666 erate 0.0266 score 2595.08 - absdiff 605.79 percdiff 20.9039 saved region 2717:7201 - 1 best edges are potentially confused break tig 2126 into up to 3 pieces: 0 2217 unique (length 2217) 2217 7701 repeat (length 5484) 7701 12717 unique (length 5016) Creating Unitig 90979 Creating Unitig 90980 Creating Unitig 90981 For tig 2126 unique region 0 2217 - 0/ 6 reads repeat/unique - unitig 90979 created. For tig 2126 repeat region 2217 7701 - 16/ 0 reads repeat/unique - unitig 90980 created. For tig 2126 unique region 7701 12717 - 0/ 13 reads repeat/unique - unitig 90981 created. Annotating repeats in reads for tig 2128/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 13620:14437 - contained in read 445124 9862- 18748 discard region 16215:18774 - contained in read 445123 9895- 18774 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2130/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 3005:4740 - contained in read 362234 2219- 9304 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2134/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 8322:6657 - contained in read 28599 3301- 11596 discard region 8609:11596 - contained in read 28599 3301- 11596 thickest edges to the repeat regions: saved region 0:5146 - closest read 133938 ( +0) 0:5286 ( +140) (contained) saved region 0:5146 - closest 5' read 133938 ( +0) 0:5286 ( +140) saved region 0:5146 - closest 3' read 133938 ( +0) 0:5286 ( +140) search for confused edges: discard region 0:5146 - no confusion in best edges Annotating repeats in reads for tig 2136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2138/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 2338:3810 - contained in read 30152 0- 5852 discard region 11005:12484 - contained in read 271926 5799- 12949 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2140/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 3813:6264 - contained in read 32785 267- 6790 thickest edges to the repeat regions: saved region 9068:14342 - closest read 341179 ( +5626) 3442:14455 ( +113) (contained) saved region 9068:14342 - closest read 371356 ( +1578) 7490:14549 ( +207) (contained) saved region 9068:14342 - closest read 125625 ( +1378) 7690:14516 ( +174) (contained) saved region 9068:14342 - closest 5' read 371356 ( +1578) 7490:14549 ( +207) saved region 9068:14342 - closest 3' read 341179 ( +5626) 3442:14455 ( +113) search for confused edges: discard region 9068:14342 - no confusion in best edges Annotating repeats in reads for tig 2142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2146/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 4713:6079 - contained in read 78626 0- 7050 discard region 15492:16842 - contained in read 36106 12110- 18183 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2147/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 1901:3065 - contained in read 230439 423- 7415 discard region 3304:8139 - contained in read 245454 834- 10371 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2148/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:8175 - contained in read 97556 0- 12021 discard region 11761:12560 - contained in read 384079 10286- 16419 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2151/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 5442:6981 - contained in read 165112 3206- 10679 discard region 8313:10679 - contained in read 165112 3206- 10679 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2152/90584. Annotated with 1419 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7506:13512 - closest 5' read 273455 ( +2549) 4957:10765 ( -2747) saved region 7506:13512 - closest 3' read 241632 ( -45) 7551:13621 ( +109) search for confused edges: tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 769 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2820 erate 0.0247 score 2750.35 - absdiff 20.38 percdiff 0.7381 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 1839 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2093 erate 0.0334 score 2023.09 - absdiff 747.63 percdiff 31.1914 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 1841 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2092 erate 0.0271 score 2035.31 - absdiff 735.42 percdiff 30.6039 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 1842 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2122 erate 0.0325 score 2053.03 - absdiff 717.69 percdiff 29.7564 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 141326 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 1218 erate 0.0197 score 1194.01 - absdiff 1576.72 percdiff 79.5372 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 152529 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2813 erate 0.0404 score 2699.35 - absdiff 71.37 percdiff 2.6094 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 197155 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2819 erate 0.0319 score 2729.07 - absdiff 41.65 percdiff 1.5146 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 210831 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2818 erate 0.0320 score 2727.82 - absdiff 42.90 percdiff 1.5604 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 221205 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2827 erate 0.0216 score 2765.94 - absdiff 4.79 percdiff 0.1729 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 264634 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2819 erate 0.0378 score 2712.44 - absdiff 58.28 percdiff 2.1258 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 281973 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2823 erate 0.0277 score 2744.80 - absdiff 25.92 percdiff 0.9399 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 313640 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2820 erate 0.0171 score 2771.78 - absdiff 1.06 percdiff 0.0381 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 313641 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2816 erate 0.0182 score 2764.75 - absdiff 5.97 percdiff 0.2158 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 314476 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2820 erate 0.0367 score 2716.51 - absdiff 54.22 percdiff 1.9761 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 336087 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 1035 erate 0.0215 score 1012.75 - absdiff 1757.98 percdiff 92.9292 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 414304 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 1885 erate 0.0220 score 1843.53 - absdiff 927.19 percdiff 40.1882 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 414307 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 1940 erate 0.0261 score 1889.37 - absdiff 881.36 percdiff 37.8257 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 425448 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2821 erate 0.0320 score 2730.73 - absdiff 39.99 percdiff 1.4540 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 442506 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 777 erate 0.0235 score 758.74 - absdiff 2011.98 percdiff 114.0107 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 442798 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2427 erate 0.0249 score 2366.57 - absdiff 404.15 percdiff 15.7342 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 446053 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 2262 erate 0.0340 score 2185.09 - absdiff 585.63 percdiff 23.6341 tig 2152 read 273456 pos 4887-10394 IS confused by 3' edge to read 464114 - best edge read 241634 len 2829 erate 0.0206 score 2770.72 - alt edge len 1273 erate 0.0252 score 1240.92 - absdiff 1529.80 percdiff 76.2681 saved region 7506:13512 - 22 best edges are potentially confused break tig 2152 into up to 3 pieces: 0 7006 unique (length 7006) 7006 14012 repeat (length 7006) 14012 16847 unique (length 2835) Creating Unitig 90982 Creating Unitig 90983 Creating Unitig 90984 For tig 2152 unique region 0 7006 - 0/ 12 reads repeat/unique - unitig 90982 created. For tig 2152 repeat region 7006 14012 - 85/ 0 reads repeat/unique - unitig 90983 created. For tig 2152 unique region 14012 16847 - 0/ 3 reads repeat/unique - unitig 90984 created. Annotating repeats in reads for tig 2153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2154/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5368:6129 - contained in read 49873 0- 7763 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2155/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2157/90584. Annotated with 684 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6001 - closest 5' read 440902 ( +0) 0:5968 ( -33) saved region 0:6001 - closest 3' read 345008 ( -1288) 1288:6102 ( +101) search for confused edges: tig 2157 read 440902 pos 0-5968 IS confused by 5' edge to read 36821 - best edge read 345008 len 4674 erate 0.0275 score 4545.47 - alt edge len 4589 erate 0.0306 score 4448.58 - absdiff 96.89 percdiff 2.1545 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 9556 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 3662 erate 0.0350 score 3533.83 - absdiff 1017.47 percdiff 25.1689 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 51583 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 2854 erate 0.0287 score 2772.09 - absdiff 1779.21 percdiff 48.5898 tig 2157 read 345008 pos 1288-6102 NOT confused by 5' edge to read 81370 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 2476 erate 0.0396 score 2377.95 - absdiff 2173.35 percdiff 62.7297 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 97422 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 3707 erate 0.0408 score 3555.75 - absdiff 995.55 percdiff 24.5600 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 121025 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 2555 erate 0.0317 score 2474.01 - absdiff 2077.29 percdiff 59.1374 tig 2157 read 345008 pos 1288-6102 NOT confused by 5' edge to read 209257 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 946 erate 0.0328 score 914.97 - absdiff 3636.33 percdiff 133.0460 tig 2157 read 345008 pos 1288-6102 NOT confused by 5' edge to read 209259 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 1268 erate 0.0402 score 1217.03 - absdiff 3334.27 percdiff 115.6063 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 326611 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 2539 erate 0.0292 score 2464.86 - absdiff 2086.44 percdiff 59.4752 tig 2157 read 345008 pos 1288-6102 NOT confused by 5' edge to read 361754 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 1361 erate 0.0309 score 1318.95 - absdiff 3232.35 percdiff 110.1267 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 366916 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 4339 erate 0.0411 score 4160.67 - absdiff 390.63 percdiff 8.9677 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 383582 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 3501 erate 0.0313 score 3391.42 - absdiff 1159.88 percdiff 29.2062 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 383583 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 3699 erate 0.0222 score 3616.88 - absdiff 934.42 percdiff 22.8795 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 394729 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 3709 erate 0.0374 score 3570.28 - absdiff 981.02 percdiff 24.1583 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 402645 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 3181 erate 0.0366 score 3064.58 - absdiff 1486.72 percdiff 39.0428 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 402648 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 3192 erate 0.0417 score 3058.89 - absdiff 1492.41 percdiff 39.2212 tig 2157 read 345008 pos 1288-6102 IS confused by 5' edge to read 423011 - best edge read 440902 len 4680 erate 0.0275 score 4551.30 - alt edge len 3710 erate 0.0205 score 3633.95 - absdiff 917.36 percdiff 22.4148 saved region 0:6001 - 13 best edges are potentially confused break tig 2157 into up to 2 pieces: 0 6501 repeat (length 6501) 6501 7885 unique (length 1384) Creating Unitig 90985 Creating Unitig 90986 For tig 2157 repeat region 0 6501 - 63/ 0 reads repeat/unique - unitig 90985 created. For tig 2157 unique region 6501 7885 - 0/ 1 reads repeat/unique - unitig 90986 created. Annotating repeats in reads for tig 2160/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2161/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 12321:17225 - contained in read 167012 9805- 17767 discard region 18637:21379 - contained in read 43109 12590- 23668 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2162/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4348:5784 - contained in read 43727 0- 7223 discard region 6614:8229 - contained in read 376467 4344- 10625 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2167/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2169/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6130:10229 - closest read 419161 ( +236) 5894:11055 ( +826) (contained) saved region 6130:10229 - closest read 162537 ( +221) 5909:11541 ( +1312) (contained) saved region 6130:10229 - closest 5' read 162537 ( +221) 5909:11541 ( +1312) saved region 6130:10229 - closest 3' read 419161 ( +236) 5894:11055 ( +826) search for confused edges: discard region 6130:10229 - no confusion in best edges Annotating repeats in reads for tig 2171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2172/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:2096 - contained in read 47143 0- 4887 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2174/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2178/90584. Annotated with 80 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5560:11345 - closest read 153675 ( +703) 4857:11450 ( +105) (contained) saved region 5560:11345 - closest 5' read 153675 ( +703) 4857:11450 ( +105) saved region 5560:11345 - closest 3' read 153675 ( +703) 4857:11450 ( +105) search for confused edges: discard region 5560:11345 - no confusion in best edges Annotating repeats in reads for tig 2179/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 2335:3499 - contained in read 50661 0- 6686 discard region 8525:9388 - contained in read 487525 22- 11969 discard region 10807:11961 - contained in read 264797 6176- 12278 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2181/90584. Annotated with 141 overlaps. Scan reads to discard spanned repeats. discard region 2595:1471 - contained in read 53069 0- 7590 discard region 3323:7591 - contained in read 53070 80- 7591 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2183/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4377:4976 - contained in read 54232 0- 8023 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2184/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2186/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. discard region 13146:16333 - contained in read 486833 10072- 17128 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2188/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 6311:10774 - contained in read 475131 4996- 11647 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2189/90584. Annotated with 119 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5528:11870 - closest 5' read 422503 ( +2810) 2718:10506 ( -1364) saved region 5528:11870 - closest 3' read 44099 ( -3) 5531:15022 ( +3152) saved region 14454:18053 - closest 5' read 211780 ( +639) 13815:17632 ( -421) saved region 14454:18053 - closest 3' read 60682 ( -1113) 15567:23468 ( +5415) search for confused edges: discard region 5528:11870 - no confusion in best edges discard region 14454:18053 - no confusion in best edges Annotating repeats in reads for tig 2191/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 139:5346 - closest read 61583 ( +139) 0:5362 ( +16) (contained) saved region 139:5346 - closest read 88660 ( +94) 45:12486 ( +7140) (contained) saved region 139:5346 - closest 5' read 88660 ( +94) 45:12486 ( +7140) saved region 139:5346 - closest 3' read 61583 ( +139) 0:5362 ( +16) search for confused edges: discard region 139:5346 - no confusion in best edges Annotating repeats in reads for tig 2192/90584. Annotated with 251 overlaps. Scan reads to discard spanned repeats. discard region 10879:12986 - contained in read 435271 6264- 12991 thickest edges to the repeat regions: saved region 6011:10262 - closest 5' read 62032 ( +5996) 15:9031 ( -1231) saved region 6011:10262 - closest 3' read 435272 ( -251) 6262:12907 ( +2645) search for confused edges: tig 2192 read 62033 pos 0-9010 IS confused by 3' edge to read 47583 - best edge read 435271 len 2746 erate 0.0168 score 2699.87 - alt edge len 2368 erate 0.0289 score 2299.56 - absdiff 400.30 percdiff 16.0139 tig 2192 read 62033 pos 0-9010 IS confused by 3' edge to read 143524 - best edge read 435271 len 2746 erate 0.0168 score 2699.87 - alt edge len 2088 erate 0.0250 score 2035.80 - absdiff 664.07 percdiff 28.0453 tig 2192 read 62033 pos 0-9010 IS confused by 3' edge to read 203090 - best edge read 435271 len 2746 erate 0.0168 score 2699.87 - alt edge len 2336 erate 0.0278 score 2271.06 - absdiff 428.81 percdiff 17.2526 tig 2192 read 62033 pos 0-9010 IS confused by 3' edge to read 223482 - best edge read 435271 len 2746 erate 0.0168 score 2699.87 - alt edge len 1719 erate 0.0199 score 1684.79 - absdiff 1015.08 percdiff 46.3012 tig 2192 read 62033 pos 0-9010 IS confused by 3' edge to read 283742 - best edge read 435271 len 2746 erate 0.0168 score 2699.87 - alt edge len 2734 erate 0.0309 score 2649.52 - absdiff 50.35 percdiff 1.8824 tig 2192 read 62033 pos 0-9010 IS confused by 3' edge to read 306337 - best edge read 435271 len 2746 erate 0.0168 score 2699.87 - alt edge len 2618 erate 0.0232 score 2557.26 - absdiff 142.60 percdiff 5.4252 tig 2192 read 62033 pos 0-9010 IS confused by 3' edge to read 398007 - best edge read 435271 len 2746 erate 0.0168 score 2699.87 - alt edge len 2386 erate 0.0292 score 2316.33 - absdiff 383.54 percdiff 15.2920 tig 2192 read 62033 pos 0-9010 IS confused by 3' edge to read 422377 - best edge read 435271 len 2746 erate 0.0168 score 2699.87 - alt edge len 1020 erate 0.0246 score 994.91 - absdiff 1704.96 percdiff 92.2903 tig 2192 read 62033 pos 0-9010 IS confused by 3' edge to read 423898 - best edge read 435271 len 2746 erate 0.0168 score 2699.87 - alt edge len 1416 erate 0.0226 score 1384.00 - absdiff 1315.87 percdiff 64.4423 saved region 6011:10262 - 9 best edges are potentially confused break tig 2192 into up to 3 pieces: 0 5511 unique (length 5511) 5511 10762 repeat (length 5251) 10762 12991 unique (length 2229) Creating Unitig 90987 Creating Unitig 90988 Creating Unitig 90989 For tig 2192 unique region 0 5511 - 0/ 4 reads repeat/unique - unitig 90987 created. For tig 2192 repeat region 5511 10762 - 1/ 0 reads repeat/unique - unitig 90989 created. For tig 2192 unique region 10762 12991 - 0/ 3 reads repeat/unique - unitig 90988 created. Annotating repeats in reads for tig 2195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2196/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 7819:9078 - contained in read 402217 3984- 10125 discard region 10292:12242 - contained in read 126410 6080- 14728 thickest edges to the repeat regions: saved region 1049:6098 - closest 5' read 150251 ( +202) 847:6090 ( -8) saved region 1049:6098 - closest 3' read 217744 ( -2830) 3879:7064 ( +966) search for confused edges: discard region 1049:6098 - no confusion in best edges Annotating repeats in reads for tig 2198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2201/90584. Annotated with 62 overlaps. Scan reads to discard spanned repeats. discard region 7436:11347 - contained in read 182061 2904- 11354 thickest edges to the repeat regions: saved region 3174:7268 - closest read 182059 ( +275) 2899:9642 ( +2374) (contained) saved region 3174:7268 - closest read 182061 ( +270) 2904:11354 ( +4086) (contained) saved region 3174:7268 - closest read 235571 ( +254) 2920:10833 ( +3565) (contained) saved region 3174:7268 - closest read 487627 ( +254) 2920:7412 ( +144) (contained) saved region 3174:7268 - closest read 467946 ( +251) 2923:7417 ( +149) (contained) saved region 3174:7268 - closest read 467944 ( +240) 2934:7446 ( +178) (contained) saved region 3174:7268 - closest read 142795 ( +229) 2945:10327 ( +3059) (contained) saved region 3174:7268 - closest read 158210 ( +16) 3158:7751 ( +483) (contained) saved region 3174:7268 - closest 5' read 182061 ( +270) 2904:11354 ( +4086) saved region 3174:7268 - closest 3' read 182059 ( +275) 2899:9642 ( +2374) search for confused edges: discard region 3174:7268 - no confusion in best edges Annotating repeats in reads for tig 2202/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 12736:8869 - contained in read 350494 2885- 9854 thickest edges to the repeat regions: saved region 2747:6611 - closest read 153500 ( +0) 2747:8708 ( +2097) (contained) saved region 2747:6611 - closest 5' read 153500 ( +0) 2747:8708 ( +2097) saved region 2747:6611 - closest 3' read 153500 ( +0) 2747:8708 ( +2097) search for confused edges: discard region 2747:6611 - no confusion in best edges Annotating repeats in reads for tig 2203/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 557:1173 - contained in read 70407 0- 8534 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2205/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2207/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 0:2147 - contained in read 559 0- 3132 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2209/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 4789:14746 - contained in read 156956 4243- 15362 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2210/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 8394:12508 - contained in read 234221 3293- 16632 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2211/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 2877:5449 - contained in read 375212 0- 8151 thickest edges to the repeat regions: saved region 6331:8143 - closest read 375212 ( +6331) 0:8151 ( +8) (contained) saved region 6331:8143 - closest read 375213 ( +6236) 95:8147 ( +4) (contained) saved region 6331:8143 - closest read 375210 ( +6140) 191:8148 ( +5) (contained) saved region 6331:8143 - closest 5' read 375212 ( +6331) 0:8151 ( +8) saved region 6331:8143 - closest 3' read 375212 ( +6331) 0:8151 ( +8) search for confused edges: discard region 6331:8143 - no confusion in best edges Annotating repeats in reads for tig 2213/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2214/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2216/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2218/90584. Annotated with 64 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6300:7360 - closest 5' read 414345 ( +2339) 3961:7302 ( -58) saved region 6300:7360 - closest 3' read 369360 ( -3) 6303:7473 ( +113) search for confused edges: tig 2218 read 414345 pos 3961-7302 IS confused by 3' edge to read 195527 - best edge read 369360 len 999 erate 0.0360 score 963.04 - alt edge len 613 erate 0.0343 score 591.97 - absdiff 371.06 percdiff 47.7247 saved region 6300:7360 - 1 best edges are potentially confused break tig 2218 into up to 2 pieces: 0 5800 unique (length 5800) 5800 7473 repeat (length 1673) Creating Unitig 90990 Creating Unitig 90991 For tig 2218 unique region 0 5800 - 0/ 16 reads repeat/unique - unitig 90990 created. For tig 2218 repeat region 5800 7473 - 21/ 0 reads repeat/unique - unitig 90991 created. Annotating repeats in reads for tig 2219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2221/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 0:2111 - contained in read 45296 0- 3149 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2223/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2224/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 5479:9652 - contained in read 64803 3856- 10300 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2225/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 5864:6775 - contained in read 66904 5170- 9740 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2226/90584. Annotated with 193 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8073:10358 - closest read 294418 ( +3329) 4744:10539 ( +181) (contained) saved region 8073:10358 - closest 5' read 294418 ( +3329) 4744:10539 ( +181) saved region 8073:10358 - closest 3' read 294418 ( +3329) 4744:10539 ( +181) search for confused edges: discard region 8073:10358 - no confusion in best edges Annotating repeats in reads for tig 2227/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2230/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4446:7561 - closest 5' read 318284 ( +3506) 940:7537 ( -24) saved region 4446:7561 - closest 3' read 86505 ( -208) 4654:12206 ( +4645) saved region 10763:13594 - closest 5' read 86507 ( +4480) 6283:12211 ( -1383) saved region 10763:13594 - closest 3' read 526777 ( -3) 10766:16705 ( +3111) search for confused edges: tig 2230 read 86504 pos 4659-12201 IS confused by 5' edge to read 185591 - best edge read 318284 len 2878 erate 0.0300 score 2791.66 - alt edge len 2231 erate 0.0310 score 2161.84 - absdiff 629.82 percdiff 25.4293 tig 2230 read 86504 pos 4659-12201 IS confused by 5' edge to read 215242 - best edge read 318284 len 2878 erate 0.0300 score 2791.66 - alt edge len 1148 erate 0.0236 score 1120.91 - absdiff 1670.75 percdiff 85.4044 saved region 4446:7561 - 2 best edges are potentially confused discard region 10763:13594 - no confusion in best edges break tig 2230 into up to 3 pieces: 0 3946 unique (length 3946) 3946 8061 repeat (length 4115) 8061 19976 unique (length 11915) Creating Unitig 90992 Creating Unitig 90993 Creating Unitig 90994 For tig 2230 unique region 0 3946 - 0/ 3 reads repeat/unique - unitig 90992 created. For tig 2230 repeat region 3946 8061 - 2/ 0 reads repeat/unique - unitig 90994 created. For tig 2230 unique region 8061 19976 - 0/ 28 reads repeat/unique - unitig 90993 created. Annotating repeats in reads for tig 2231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2232/90584. Annotated with 751 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:20836 - closest 5' read 523972 ( +0) 0:12895 ( -7941) saved region 0:20836 - closest 3' read 87952 ( -8283) 8283:20836 ( +0) search for confused edges: tig 2232 read 315656 pos 823-16143 NOT confused by 3' edge to read 394261 - best edge read 523972 len 12072 erate 0.0191 score 11841.42 - alt edge len 2429 erate 0.0338 score 2346.90 - absdiff 9494.53 percdiff 133.8357 tig 2232 read 320515 pos 5532-20494 NOT confused by 3' edge to read 394261 - best edge read 315656 len 10611 erate 0.0208 score 10390.29 - alt edge len 1793 erate 0.0279 score 1742.98 - absdiff 8647.32 percdiff 142.5390 tig 2232 read 87952 pos 8283-20836 NOT confused by 5' edge to read 163841 - best edge read 320515 len 12211 erate 0.0120 score 12064.47 - alt edge len 997 erate 0.0422 score 954.93 - absdiff 11109.54 percdiff 170.6614 tig 2232 read 87952 pos 8283-20836 NOT confused by 5' edge to read 369503 - best edge read 320515 len 12211 erate 0.0120 score 12064.47 - alt edge len 1131 erate 0.0381 score 1087.91 - absdiff 10976.56 percdiff 166.9137 tig 2232 read 87952 pos 8283-20836 NOT confused by 5' edge to read 387635 - best edge read 320515 len 12211 erate 0.0120 score 12064.47 - alt edge len 620 erate 0.0354 score 598.05 - absdiff 11466.42 percdiff 181.1080 tig 2232 read 87952 pos 8283-20836 NOT confused by 5' edge to read 387638 - best edge read 320515 len 12211 erate 0.0120 score 12064.47 - alt edge len 597 erate 0.0302 score 578.97 - absdiff 11485.50 percdiff 181.6831 tig 2232 read 87952 pos 8283-20836 NOT confused by 5' edge to read 394261 - best edge read 320515 len 12211 erate 0.0120 score 12064.47 - alt edge len 3081 erate 0.0344 score 2975.01 - absdiff 9089.45 percdiff 120.8746 discard region 0:20836 - no confusion in best edges Annotating repeats in reads for tig 2233/90584. Annotated with 57 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6967:10029 - closest read 267004 ( +5601) 1366:10389 ( +360) (contained) saved region 6967:10029 - closest read 478062 ( +5248) 1719:10328 ( +299) (contained) saved region 6967:10029 - closest 5' read 267004 ( +5601) 1366:10389 ( +360) saved region 6967:10029 - closest 3' read 267004 ( +5601) 1366:10389 ( +360) search for confused edges: discard region 6967:10029 - no confusion in best edges Annotating repeats in reads for tig 2238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2242/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2243/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1472:7679 - closest 5' read 56743 ( +953) 519:7135 ( -544) saved region 1472:7679 - closest 3' read 248873 ( -991) 2463:8708 ( +1029) search for confused edges: discard region 1472:7679 - no confusion in best edges Annotating repeats in reads for tig 2245/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2247/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 7890:10858 - contained in read 334789 5109- 10858 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2248/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 17349:18353 - contained in read 218604 11709- 18353 thickest edges to the repeat regions: saved region 7449:14830 - closest read 101470 ( +245) 7204:17353 ( +2523) (contained) saved region 7449:14830 - closest 5' read 101470 ( +245) 7204:17353 ( +2523) saved region 7449:14830 - closest 3' read 101470 ( +245) 7204:17353 ( +2523) search for confused edges: discard region 7449:14830 - no confusion in best edges Annotating repeats in reads for tig 2250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2252/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2253/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5415:13517 - closest read 494746 ( +305) 5110:16559 ( +3042) (contained) saved region 5415:13517 - closest 5' read 494746 ( +305) 5110:16559 ( +3042) saved region 5415:13517 - closest 3' read 494746 ( +305) 5110:16559 ( +3042) search for confused edges: discard region 5415:13517 - no confusion in best edges Annotating repeats in reads for tig 2254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2260/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2261/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10378:10916 - closest 5' read 225743 ( +5234) 5144:10915 ( -1) saved region 10378:10916 - closest 3' read 410993 ( -10) 10388:16658 ( +5742) search for confused edges: discard region 10378:10916 - no confusion in best edges Annotating repeats in reads for tig 2262/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2263/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2264/90584. Annotated with 68 overlaps. Scan reads to discard spanned repeats. discard region 10414:9826 - contained in read 331775 3877- 13034 thickest edges to the repeat regions: saved region 2977:9668 - closest 5' read 28708 ( +18) 2959:7782 ( -1886) saved region 2977:9668 - closest 3' read 331775 ( -900) 3877:13034 ( +3366) search for confused edges: tig 2264 read 242066 pos 2202-7719 NOT confused by 3' edge to read 54149 - best edge read 366584 len 4176 erate 0.0273 score 4062.00 - alt edge len 1847 erate 0.0249 score 1801.01 - absdiff 2260.99 percdiff 77.1272 tig 2264 read 242066 pos 2202-7719 NOT confused by 3' edge to read 54150 - best edge read 366584 len 4176 erate 0.0273 score 4062.00 - alt edge len 1815 erate 0.0259 score 1767.99 - absdiff 2294.00 percdiff 78.6967 tig 2264 read 242066 pos 2202-7719 NOT confused by 3' edge to read 54152 - best edge read 366584 len 4176 erate 0.0273 score 4062.00 - alt edge len 1837 erate 0.0272 score 1787.03 - absdiff 2274.96 percdiff 77.7894 tig 2264 read 242066 pos 2202-7719 NOT confused by 3' edge to read 365684 - best edge read 366584 len 4176 erate 0.0273 score 4062.00 - alt edge len 1347 erate 0.0305 score 1305.92 - absdiff 2756.08 percdiff 102.6872 tig 2264 read 242066 pos 2202-7719 IS confused by 3' edge to read 377858 - best edge read 366584 len 4176 erate 0.0273 score 4062.00 - alt edge len 2533 erate 0.0237 score 2472.97 - absdiff 1589.03 percdiff 48.6316 tig 2264 read 366584 pos 3543-9575 IS confused by 3' edge to read 54149 - best edge read 331775 len 5698 erate 0.0158 score 5607.97 - alt edge len 3715 erate 0.0143 score 3661.88 - absdiff 1946.10 percdiff 41.9877 tig 2264 read 366584 pos 3543-9575 IS confused by 3' edge to read 54150 - best edge read 331775 len 5698 erate 0.0158 score 5607.97 - alt edge len 3683 erate 0.0391 score 3538.99 - absdiff 2068.98 percdiff 45.2385 tig 2264 read 366584 pos 3543-9575 IS confused by 3' edge to read 54152 - best edge read 331775 len 5698 erate 0.0158 score 5607.97 - alt edge len 3705 erate 0.0160 score 3645.72 - absdiff 1962.25 percdiff 42.4101 tig 2264 read 366584 pos 3543-9575 NOT confused by 3' edge to read 365684 - best edge read 331775 len 5698 erate 0.0158 score 5607.97 - alt edge len 3209 erate 0.0140 score 3164.07 - absdiff 2443.90 percdiff 55.7201 tig 2264 read 366584 pos 3543-9575 IS confused by 5' edge to read 377860 - best edge read 242066 len 4188 erate 0.0273 score 4073.67 - alt edge len 2517 erate 0.0223 score 2460.87 - absdiff 1612.80 percdiff 49.3622 tig 2264 read 366584 pos 3543-9575 IS confused by 5' edge to read 386786 - best edge read 242066 len 4188 erate 0.0273 score 4073.67 - alt edge len 2239 erate 0.0322 score 2166.90 - absdiff 1906.76 percdiff 61.1086 tig 2264 read 331775 pos 3877-13034 NOT confused by 3' edge to read 377860 - best edge read 366584 len 5733 erate 0.0160 score 5641.27 - alt edge len 2208 erate 0.0086 score 2189.01 - absdiff 3452.26 percdiff 88.1772 tig 2264 read 331775 pos 3877-13034 NOT confused by 3' edge to read 386786 - best edge read 366584 len 5733 erate 0.0160 score 5641.27 - alt edge len 1930 erate 0.0145 score 1902.02 - absdiff 3739.26 percdiff 99.1413 saved region 2977:9668 - 6 best edges are potentially confused break tig 2264 into up to 3 pieces: 0 2477 unique (length 2477) 2477 10168 repeat (length 7691) 10168 14027 unique (length 3859) Creating Unitig 90995 Creating Unitig 90996 Creating Unitig 90997 For tig 2264 unique region 0 2477 - 0/ 5 reads repeat/unique - unitig 90995 created. For tig 2264 repeat region 2477 10168 - 19/ 0 reads repeat/unique - unitig 90996 created. For tig 2264 unique region 10168 14027 - 0/ 8 reads repeat/unique - unitig 90997 created. Annotating repeats in reads for tig 2265/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2266/90584. Annotated with 445 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 52:12651 - closest 5' read 332986 ( +35) 17:11627 ( -1024) saved region 52:12651 - closest 3' read 37989 (-11694) 11746:18535 ( +5884) saved region 12603:18506 - closest read 37989 ( +857) 11746:18535 ( +29) (contained) saved region 12603:18506 - closest read 37988 ( +824) 11779:18640 ( +134) (contained) saved region 12603:18506 - closest 5' read 37988 ( +824) 11779:18640 ( +134) saved region 12603:18506 - closest 3' read 37989 ( +857) 11746:18535 ( +29) search for confused edges: tig 2266 read 332986 pos 17-11627 NOT confused by 5' edge to read 437564 - best edge read 56773 len 9914 erate 0.0268 score 9648.30 - alt edge len 821 erate 0.0355 score 791.85 - absdiff 8856.45 percdiff 169.6612 tig 2266 read 56773 pos 1690-12457 NOT confused by 5' edge to read 437564 - best edge read 499753 len 8898 erate 0.0268 score 8659.53 - alt edge len 1657 erate 0.0249 score 1615.74 - absdiff 7043.79 percdiff 137.1018 tig 2266 read 56773 pos 1690-12457 NOT confused by 5' edge to read 437566 - best edge read 499753 len 8898 erate 0.0268 score 8659.53 - alt edge len 1660 erate 0.0279 score 1613.69 - absdiff 7045.85 percdiff 137.1692 discard region 52:12651 - no confusion in best edges discard region 12603:18506 - no confusion in best edges Annotating repeats in reads for tig 2267/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11680:10466 - contained in read 362407 831- 11628 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2271/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2274/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2276/90584. Annotated with 70 overlaps. Scan reads to discard spanned repeats. discard region 3189:2654 - contained in read 108813 0- 5472 discard region 5708:2784 - contained in read 108813 0- 5472 thickest edges to the repeat regions: saved region 5793:13474 - closest 5' read 232620 ( +1717) 4076:9988 ( -3486) saved region 5793:13474 - closest 3' read 520511 ( -1330) 7123:14836 ( +1362) search for confused edges: tig 2276 read 232620 pos 4076-9988 NOT confused by 5' edge to read 30646 - best edge read 520512 len 2863 erate 0.0329 score 2768.81 - alt edge len 666 erate 0.0300 score 646.02 - absdiff 2122.79 percdiff 124.3277 discard region 5793:13474 - no confusion in best edges Annotating repeats in reads for tig 2277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2280/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2281/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2283/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2287/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2288/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2289/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2294/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2295/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4729:5904 - contained in read 441969 1014- 8076 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2298/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10119:13659 - closest read 396973 ( +76) 10043:15929 ( +2270) (contained) saved region 10119:13659 - closest read 396972 ( +13) 10106:15972 ( +2313) (contained) saved region 10119:13659 - closest 5' read 396972 ( +13) 10106:15972 ( +2313) saved region 10119:13659 - closest 3' read 396973 ( +76) 10043:15929 ( +2270) search for confused edges: discard region 10119:13659 - no confusion in best edges Annotating repeats in reads for tig 2299/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2301/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 1474:7657 - contained in read 184084 1- 8986 discard region 8369:8995 - contained in read 488960 1058- 9942 discard region 8984:9934 - contained in read 123967 3595- 11550 discard region 10572:11115 - contained in read 123967 3595- 11550 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2304/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6819:7547 - contained in read 72219 6140- 11591 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2306/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9491:13428 - closest read 402844 ( +2382) 7109:13438 ( +10) (contained) saved region 9491:13428 - closest read 379491 ( +316) 9175:13738 ( +310) (contained) saved region 9491:13428 - closest 5' read 379491 ( +316) 9175:13738 ( +310) saved region 9491:13428 - closest 3' read 402844 ( +2382) 7109:13438 ( +10) search for confused edges: discard region 9491:13428 - no confusion in best edges Annotating repeats in reads for tig 2307/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 6817:10553 - contained in read 405908 4157- 10607 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2309/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2310/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4780:5696 - contained in read 127625 14- 5696 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2312/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10:2515 - contained in read 327079 0- 5587 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2313/90584. Annotated with 55 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5060:6172 - closest 5' read 131587 ( +5016) 44:6167 ( -5) saved region 5060:6172 - closest 3' read 101449 ( -164) 5224:7441 ( +1269) saved region 7312:10769 - closest 5' read 438285 ( +0) 7312:9631 ( -1138) saved region 7312:10769 - closest 3' read 274690 ( -15) 7327:12910 ( +2141) search for confused edges: tig 2313 read 24295 pos 7322-10730 NOT confused by 5' edge to read 229461 - best edge read 274690 len 3403 erate 0.0312 score 3296.83 - alt edge len 708 erate 0.0354 score 682.94 - absdiff 2613.89 percdiff 131.3591 tig 2313 read 274690 pos 7327-12910 IS confused by 5' edge to read 178841 - best edge read 24295 len 3428 erate 0.0312 score 3321.05 - alt edge len 2241 erate 0.0402 score 2150.91 - absdiff 1170.13 percdiff 42.7684 tig 2313 read 274690 pos 7327-12910 IS confused by 5' edge to read 178843 - best edge read 24295 len 3428 erate 0.0312 score 3321.05 - alt edge len 2093 erate 0.0306 score 2028.95 - absdiff 1292.09 percdiff 48.3025 tig 2313 read 274690 pos 7327-12910 IS confused by 5' edge to read 210512 - best edge read 24295 len 3428 erate 0.0312 score 3321.05 - alt edge len 3368 erate 0.0315 score 3261.91 - absdiff 59.14 percdiff 1.7967 discard region 5060:6172 - no confusion in best edges saved region 7312:10769 - 3 best edges are potentially confused break tig 2313 into up to 3 pieces: 0 6812 unique (length 6812) 6812 11269 repeat (length 4457) 11269 12910 unique (length 1641) Creating Unitig 90998 Creating Unitig 90999 Creating Unitig 91000 For tig 2313 unique region 0 6812 - 0/ 12 reads repeat/unique - unitig 90998 created. For tig 2313 repeat region 6812 11269 - 33/ 0 reads repeat/unique - unitig 90999 created. For tig 2313 unique region 11269 12910 - 0/ 2 reads repeat/unique - unitig 91000 created. Annotating repeats in reads for tig 2316/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2318/90584. Annotated with 101 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4225:10710 - closest 5' read 140661 ( +239) 3986:10353 ( -357) saved region 4225:10710 - closest 3' read 337700 ( -52) 4277:10744 ( +34) search for confused edges: tig 2318 read 140661 pos 3986-10353 NOT confused by 5' edge to read 194024 - best edge read 461450 len 6090 erate 0.0280 score 5919.48 - alt edge len 2321 erate 0.0340 score 2242.09 - absdiff 3677.39 percdiff 90.1149 tig 2318 read 461450 pos 4251-10354 NOT confused by 5' edge to read 47143 - best edge read 140661 len 6102 erate 0.0280 score 5931.14 - alt edge len 2114 erate 0.0345 score 2041.07 - absdiff 3890.08 percdiff 97.5909 tig 2318 read 461450 pos 4251-10354 NOT confused by 5' edge to read 47146 - best edge read 140661 len 6102 erate 0.0280 score 5931.14 - alt edge len 2003 erate 0.0296 score 1943.71 - absdiff 3987.43 percdiff 101.2700 tig 2318 read 461450 pos 4251-10354 NOT confused by 5' edge to read 122107 - best edge read 140661 len 6102 erate 0.0280 score 5931.14 - alt edge len 3115 erate 0.0205 score 3051.14 - absdiff 2880.00 percdiff 64.1262 tig 2318 read 461450 pos 4251-10354 NOT confused by 3' edge to read 194024 - best edge read 337700 len 6083 erate 0.0193 score 5965.60 - alt edge len 2312 erate 0.0340 score 2233.39 - absdiff 3732.21 percdiff 91.0406 tig 2318 read 461450 pos 4251-10354 NOT confused by 5' edge to read 253578 - best edge read 140661 len 6102 erate 0.0280 score 5931.14 - alt edge len 2919 erate 0.0213 score 2856.83 - absdiff 3074.32 percdiff 69.9665 tig 2318 read 461450 pos 4251-10354 NOT confused by 5' edge to read 321161 - best edge read 140661 len 6102 erate 0.0280 score 5931.14 - alt edge len 2948 erate 0.0285 score 2863.98 - absdiff 3067.16 percdiff 69.7469 tig 2318 read 461450 pos 4251-10354 NOT confused by 5' edge to read 321162 - best edge read 140661 len 6102 erate 0.0280 score 5931.14 - alt edge len 2944 erate 0.0303 score 2854.80 - absdiff 3076.35 percdiff 70.0289 tig 2318 read 461450 pos 4251-10354 NOT confused by 3' edge to read 525179 - best edge read 337700 len 6083 erate 0.0193 score 5965.60 - alt edge len 3911 erate 0.0287 score 3798.75 - absdiff 2166.84 percdiff 44.3827 tig 2318 read 461450 pos 4251-10354 NOT confused by 3' edge to read 525180 - best edge read 337700 len 6083 erate 0.0193 score 5965.60 - alt edge len 3596 erate 0.0372 score 3462.23 - absdiff 2503.37 percdiff 53.1060 tig 2318 read 337700 pos 4277-10744 NOT confused by 5' edge to read 122107 - best edge read 461450 len 6077 erate 0.0193 score 5959.71 - alt edge len 3086 erate 0.0273 score 3001.75 - absdiff 2957.96 percdiff 66.0151 tig 2318 read 337700 pos 4277-10744 NOT confused by 5' edge to read 253578 - best edge read 461450 len 6077 erate 0.0193 score 5959.71 - alt edge len 2885 erate 0.0305 score 2797.01 - absdiff 3162.71 percdiff 72.2349 tig 2318 read 337700 pos 4277-10744 NOT confused by 5' edge to read 321161 - best edge read 461450 len 6077 erate 0.0193 score 5959.71 - alt edge len 2914 erate 0.0338 score 2815.51 - absdiff 3144.21 percdiff 71.6610 tig 2318 read 337700 pos 4277-10744 NOT confused by 5' edge to read 321162 - best edge read 461450 len 6077 erate 0.0193 score 5959.71 - alt edge len 2910 erate 0.0346 score 2809.31 - absdiff 3150.40 percdiff 71.8529 discard region 4225:10710 - no confusion in best edges Annotating repeats in reads for tig 2320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2322/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 0:4599 - contained in read 135530 0- 6294 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2323/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2325/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2327/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2331/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 883:0 - contained in read 66097 0- 6772 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2333/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6332:8159 - closest 5' read 183518 ( +6320) 12:7833 ( -326) saved region 6332:8159 - closest 3' read 497264 ( -1) 6333:10601 ( +2442) search for confused edges: discard region 6332:8159 - no confusion in best edges Annotating repeats in reads for tig 2336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2338/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2340/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2343/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 6078:10294 - contained in read 244209 2210- 12286 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2344/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 909:5946 - contained in read 282499 29- 6734 thickest edges to the repeat regions: saved region 8332:10443 - closest 5' read 428169 ( +7434) 898:10196 ( -247) saved region 8332:10443 - closest 3' read 454041 ( -34) 8366:12394 ( +1951) search for confused edges: discard region 8332:10443 - no confusion in best edges Annotating repeats in reads for tig 2345/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3646:8153 - contained in read 368933 198- 9166 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2346/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:3009 - contained in read 224165 0- 6282 discard region 5979:10142 - contained in read 149861 4531- 10142 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2350/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1447:4912 - contained in read 151663 0- 6464 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2351/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10665:16255 - closest read 39560 ( +1) 10664:16342 ( +87) (contained) saved region 10665:16255 - closest 5' read 39560 ( +1) 10664:16342 ( +87) saved region 10665:16255 - closest 3' read 39560 ( +1) 10664:16342 ( +87) search for confused edges: discard region 10665:16255 - no confusion in best edges Annotating repeats in reads for tig 2352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2360/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 12780:10518 - contained in read 51614 5495- 13376 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2363/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2364/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4126:9309 - contained in read 160677 1736- 9309 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2367/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2368/90584. Annotated with 71 overlaps. Scan reads to discard spanned repeats. discard region 5149:7540 - contained in read 75817 1492- 8556 discard region 14694:16719 - contained in read 163766 13252- 16719 thickest edges to the repeat regions: saved region 825:4191 - closest 5' read 287237 ( +825) 0:3302 ( -889) saved region 825:4191 - closest 3' read 299679 ( -488) 1313:7235 ( +3044) search for confused edges: discard region 825:4191 - no confusion in best edges Annotating repeats in reads for tig 2370/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2371/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4555:5894 - closest read 452657 ( +439) 4116:9844 ( +3950) (contained) saved region 4555:5894 - closest read 93391 ( +0) 4555:10590 ( +4696) (contained) saved region 4555:5894 - closest read 93393 ( +0) 4555:10586 ( +4692) (contained) saved region 4555:5894 - closest 5' read 93391 ( +0) 4555:10590 ( +4696) saved region 4555:5894 - closest 3' read 452657 ( +439) 4116:9844 ( +3950) search for confused edges: discard region 4555:5894 - no confusion in best edges Annotating repeats in reads for tig 2374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2376/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10720:12871 - contained in read 409159 2284- 13597 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2381/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2383/90584. Annotated with 51 overlaps. Scan reads to discard spanned repeats. discard region 8811:10138 - contained in read 186704 4303- 11492 thickest edges to the repeat regions: saved region 190:7769 - closest read 171855 ( +190) 0:7954 ( +185) (contained) saved region 190:7769 - closest 5' read 171855 ( +190) 0:7954 ( +185) saved region 190:7769 - closest 3' read 171855 ( +190) 0:7954 ( +185) search for confused edges: discard region 190:7769 - no confusion in best edges Annotating repeats in reads for tig 2384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2385/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5097:9011 - closest 5' read 411500 ( +995) 4102:9007 ( -4) saved region 5097:9011 - closest 3' read 438833 ( -27) 5124:16575 ( +7564) search for confused edges: tig 2385 read 438833 pos 5124-16575 NOT confused by 3' edge to read 264576 - best edge read 411500 len 3883 erate 0.0198 score 3806.12 - alt edge len 1699 erate 0.0267 score 1653.64 - absdiff 2152.48 percdiff 78.8490 tig 2385 read 438833 pos 5124-16575 NOT confused by 3' edge to read 430035 - best edge read 411500 len 3883 erate 0.0198 score 3806.12 - alt edge len 587 erate 0.0120 score 579.96 - absdiff 3226.16 percdiff 147.1093 discard region 5097:9011 - no confusion in best edges Annotating repeats in reads for tig 2386/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2387/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2390/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 9016:11585 - contained in read 216209 5025- 12627 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2395/90584. Annotated with 58 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5639:10532 - closest 5' read 90953 ( +12) 5627:10373 ( -159) saved region 5639:10532 - closest 3' read 157648 ( -152) 5791:13133 ( +2601) search for confused edges: discard region 5639:10532 - no confusion in best edges Annotating repeats in reads for tig 2396/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2069:1416 - contained in read 242055 0- 6038 thickest edges to the repeat regions: saved region 3789:6559 - closest 5' read 60493 ( +2381) 1408:6551 ( -8) saved region 3789:6559 - closest 3' read 104995 ( -30) 3819:8785 ( +2226) search for confused edges: tig 2396 read 60493 pos 1408-6551 IS confused by 5' edge to read 159704 - best edge read 104995 len 2730 erate 0.0198 score 2675.95 - alt edge len 846 erate 0.0119 score 835.93 - absdiff 1840.01 percdiff 104.7880 tig 2396 read 60493 pos 1408-6551 IS confused by 5' edge to read 517865 - best edge read 104995 len 2730 erate 0.0198 score 2675.95 - alt edge len 1430 erate 0.0161 score 1406.98 - absdiff 1268.97 percdiff 62.1598 tig 2396 read 60493 pos 1408-6551 IS confused by 5' edge to read 517866 - best edge read 104995 len 2730 erate 0.0198 score 2675.95 - alt edge len 1434 erate 0.0203 score 1404.89 - absdiff 1271.06 percdiff 62.2939 tig 2396 read 104995 pos 3819-8785 IS confused by 5' edge to read 313146 - best edge read 60493 len 2732 erate 0.0198 score 2677.91 - alt edge len 959 erate 0.0367 score 923.80 - absdiff 1754.10 percdiff 97.4038 saved region 3789:6559 - 4 best edges are potentially confused break tig 2396 into up to 3 pieces: 0 3289 unique (length 3289) 3289 7059 repeat (length 3770) 7059 13388 unique (length 6329) Creating Unitig 91001 Creating Unitig 91002 Creating Unitig 91003 For tig 2396 unique region 0 3289 - 0/ 3 reads repeat/unique - unitig 91001 created. For tig 2396 repeat region 3289 7059 - 18/ 0 reads repeat/unique - unitig 91002 created. For tig 2396 unique region 7059 13388 - 0/ 18 reads repeat/unique - unitig 91003 created. Annotating repeats in reads for tig 2399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2401/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 1344:6517 - contained in read 180046 1- 6517 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2405/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2407/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7479:8313 - closest read 452559 ( +0) 7479:13525 ( +5212) (contained) saved region 7479:8313 - closest 5' read 452559 ( +0) 7479:13525 ( +5212) saved region 7479:8313 - closest 3' read 452559 ( +0) 7479:13525 ( +5212) search for confused edges: discard region 7479:8313 - no confusion in best edges Annotating repeats in reads for tig 2408/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2410/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 6735:9657 - contained in read 253578 3663- 9658 thickest edges to the repeat regions: saved region 3500:4036 - closest read 188460 ( +3500) 0:4218 ( +182) (contained) saved region 3500:4036 - closest read 149794 ( +2592) 908:4049 ( +13) (contained) saved region 3500:4036 - closest read 488939 ( +2587) 913:4051 ( +15) (contained) saved region 3500:4036 - closest 5' read 188460 ( +3500) 0:4218 ( +182) saved region 3500:4036 - closest 3' read 188460 ( +3500) 0:4218 ( +182) search for confused edges: discard region 3500:4036 - no confusion in best edges Annotating repeats in reads for tig 2412/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 13404:14140 - contained in read 101581 4158- 15434 thickest edges to the repeat regions: saved region 2679:6675 - closest 5' read 295903 ( +129) 2550:6555 ( -120) saved region 2679:6675 - closest 3' read 314534 ( -639) 3318:6756 ( +81) search for confused edges: discard region 2679:6675 - no confusion in best edges Annotating repeats in reads for tig 2413/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 0:2821 - contained in read 481150 0- 5274 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2414/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2415/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2417/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2418/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2421/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5203:6902 - contained in read 230485 1443- 8837 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2426/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10269:11396 - contained in read 127344 4575- 11425 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2430/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6:1112 - contained in read 336509 0- 7802 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2432/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3157:6810 - closest read 11716 ( +5) 3152:6812 ( +2) (contained) saved region 3157:6810 - closest 5' read 11716 ( +5) 3152:6812 ( +2) saved region 3157:6810 - closest 3' read 11716 ( +5) 3152:6812 ( +2) search for confused edges: discard region 3157:6810 - no confusion in best edges Annotating repeats in reads for tig 2435/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2449/90584. Annotated with 93 overlaps. Scan reads to discard spanned repeats. discard region 4580:5095 - contained in read 475281 0- 9734 discard region 5941:8657 - contained in read 475281 0- 9734 discard region 8866:12700 - contained in read 257168 6171- 14424 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2455/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 618:1241 - contained in read 209618 0- 5585 discard region 7367:8083 - contained in read 211424 2851- 9162 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2456/90584. Annotated with 163 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4613:11237 - closest 5' read 422889 ( +50) 4563:6842 ( -4395) saved region 4613:11237 - closest 3' read 8106 ( -1246) 5859:11826 ( +589) search for confused edges: discard region 4613:11237 - no confusion in best edges Annotating repeats in reads for tig 2458/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 10136:12993 - contained in read 181938 5985- 13011 thickest edges to the repeat regions: saved region 5920:7034 - closest 5' read 214652 ( +5920) 0:6893 ( -141) saved region 5920:7034 - closest 3' read 181938 ( -65) 5985:13011 ( +5977) search for confused edges: discard region 5920:7034 - no confusion in best edges Annotating repeats in reads for tig 2459/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4627:5167 - contained in read 214770 0- 5976 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2468/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2218:3226 - contained in read 221417 0- 6034 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2469/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:593 - contained in read 221736 0- 6284 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2470/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2473/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:690 - contained in read 223547 0- 5715 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2474/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 844:0 - contained in read 223944 0- 5966 thickest edges to the repeat regions: saved region 7865:13363 - closest 5' read 8221 ( +1) 7864:13292 ( -71) saved region 7865:13363 - closest 3' read 140520 ( -3) 7868:14078 ( +715) search for confused edges: discard region 7865:13363 - no confusion in best edges Annotating repeats in reads for tig 2477/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2478/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2481/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2482/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6677:9953 - closest 5' read 52427 ( +5764) 913:9935 ( -18) saved region 6677:9953 - closest 3' read 498718 ( -15) 6692:12665 ( +2712) search for confused edges: tig 2482 read 498718 pos 6692-12665 IS confused by 5' edge to read 175210 - best edge read 52427 len 3259 erate 0.0204 score 3192.52 - alt edge len 3241 erate 0.0171 score 3185.58 - absdiff 6.94 percdiff 0.2175 saved region 6677:9953 - 1 best edges are potentially confused break tig 2482 into up to 3 pieces: 0 6177 unique (length 6177) 6177 10453 repeat (length 4276) 10453 18563 unique (length 8110) Creating Unitig 91004 Creating Unitig 91005 Creating Unitig 91006 For tig 2482 unique region 0 6177 - 0/ 22 reads repeat/unique - unitig 91004 created. For tig 2482 repeat region 6177 10453 - 2/ 0 reads repeat/unique - unitig 91006 created. For tig 2482 unique region 10453 18563 - 0/ 15 reads repeat/unique - unitig 91005 created. Annotating repeats in reads for tig 2483/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 989:0 - contained in read 175210 0- 8092 discard region 3234:2132 - contained in read 175210 0- 8092 discard region 3494:6124 - contained in read 175210 0- 8092 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2484/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2488/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2491/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2501/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4144:5422 - closest 5' read 429180 ( +1312) 2832:4872 ( -550) saved region 4144:5422 - closest 3' read 271920 ( -96) 4240:10304 ( +4882) search for confused edges: discard region 4144:5422 - no confusion in best edges Annotating repeats in reads for tig 2502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2503/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9247:11660 - closest 5' read 7136 ( +12) 9235:11653 ( -7) saved region 9247:11660 - closest 3' read 431425 ( -7) 9254:14814 ( +3154) search for confused edges: discard region 9247:11660 - no confusion in best edges Annotating repeats in reads for tig 2506/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 7898:11027 - contained in read 15863 895- 11027 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2508/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2511/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2513/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2517/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 369:5413 - contained in read 255069 0- 6256 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2518/90584. Annotated with 106 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6:5359 - closest read 292949 ( +6) 0:5547 ( +188) (contained) saved region 6:5359 - closest 5' read 292949 ( +6) 0:5547 ( +188) saved region 6:5359 - closest 3' read 292949 ( +6) 0:5547 ( +188) search for confused edges: discard region 6:5359 - no confusion in best edges Annotating repeats in reads for tig 2521/90584. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 4544:10960 - contained in read 52205 2582- 11690 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2523/90584. Annotated with 52 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 32:6759 - closest 5' read 295951 ( +32) 0:5408 ( -1351) saved region 32:6759 - closest 3' read 152472 ( -288) 320:6855 ( +96) search for confused edges: tig 2523 read 295951 pos 0-5408 NOT confused by 3' edge to read 12201 - best edge read 152471 len 5146 erate 0.0238 score 5023.53 - alt edge len 985 erate 0.0342 score 951.31 - absdiff 4072.21 percdiff 136.3120 tig 2523 read 295951 pos 0-5408 NOT confused by 3' edge to read 58684 - best edge read 152471 len 5146 erate 0.0238 score 5023.53 - alt edge len 535 erate 0.0207 score 523.93 - absdiff 4499.60 percdiff 162.2223 tig 2523 read 295951 pos 0-5408 NOT confused by 3' edge to read 306483 - best edge read 152471 len 5146 erate 0.0238 score 5023.53 - alt edge len 626 erate 0.0193 score 613.92 - absdiff 4409.61 percdiff 156.4400 tig 2523 read 295951 pos 0-5408 NOT confused by 3' edge to read 526777 - best edge read 152471 len 5146 erate 0.0238 score 5023.53 - alt edge len 1574 erate 0.0248 score 1534.96 - absdiff 3488.56 percdiff 106.3830 tig 2523 read 152472 pos 320-6855 NOT confused by 5' edge to read 185591 - best edge read 152471 len 6381 erate 0.0195 score 6256.57 - alt edge len 2168 erate 0.0245 score 2114.88 - absdiff 4141.69 percdiff 98.9478 tig 2523 read 152472 pos 320-6855 NOT confused by 5' edge to read 215242 - best edge read 152471 len 6381 erate 0.0195 score 6256.57 - alt edge len 1084 erate 0.0250 score 1056.90 - absdiff 5199.67 percdiff 142.1943 tig 2523 read 152472 pos 320-6855 NOT confused by 5' edge to read 318284 - best edge read 152471 len 6381 erate 0.0195 score 6256.57 - alt edge len 2817 erate 0.0189 score 2763.76 - absdiff 3492.81 percdiff 77.4431 tig 2523 read 152471 pos 324-6701 NOT confused by 5' edge to read 12201 - best edge read 152472 len 6371 erate 0.0195 score 6246.77 - alt edge len 2280 erate 0.0379 score 2193.59 - absdiff 4053.18 percdiff 96.0428 tig 2523 read 152471 pos 324-6701 NOT confused by 3' edge to read 185591 - best edge read 295951 len 5084 erate 0.0238 score 4963.00 - alt edge len 2175 erate 0.0248 score 2121.06 - absdiff 2841.94 percdiff 80.2348 tig 2523 read 152471 pos 324-6701 NOT confused by 3' edge to read 215242 - best edge read 295951 len 5084 erate 0.0238 score 4963.00 - alt edge len 1096 erate 0.0164 score 1078.03 - absdiff 3884.98 percdiff 128.6197 tig 2523 read 152471 pos 324-6701 NOT confused by 3' edge to read 318284 - best edge read 295951 len 5084 erate 0.0238 score 4963.00 - alt edge len 2828 erate 0.0174 score 2778.79 - absdiff 2184.21 percdiff 56.4264 discard region 32:6759 - no confusion in best edges Annotating repeats in reads for tig 2527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2529/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5251:4723 - contained in read 263485 0- 6576 discard region 5918:5282 - contained in read 263485 0- 6576 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2534/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4175:11155 - closest 5' read 309993 ( +297) 3878:9230 ( -1925) saved region 4175:11155 - closest 3' read 264429 ( -1013) 5188:11627 ( +472) search for confused edges: discard region 4175:11155 - no confusion in best edges Annotating repeats in reads for tig 2536/90584. Annotated with 58 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8928:15455 - closest 5' read 232080 ( +3918) 5010:14275 ( -1180) saved region 8928:15455 - closest 3' read 266277 ( -94) 9022:15694 ( +239) search for confused edges: tig 2536 read 232080 pos 5010-14275 NOT confused by 5' edge to read 137293 - best edge read 266274 len 5338 erate 0.0206 score 5228.04 - alt edge len 973 erate 0.0323 score 941.57 - absdiff 4286.47 percdiff 138.9542 tig 2536 read 232080 pos 5010-14275 NOT confused by 5' edge to read 410527 - best edge read 266274 len 5338 erate 0.0206 score 5228.04 - alt edge len 1862 erate 0.0292 score 1807.63 - absdiff 3420.41 percdiff 97.2305 tig 2536 read 232080 pos 5010-14275 NOT confused by 5' edge to read 410529 - best edge read 266274 len 5338 erate 0.0206 score 5228.04 - alt edge len 1856 erate 0.0288 score 1802.55 - absdiff 3425.49 percdiff 97.4454 tig 2536 read 232080 pos 5010-14275 NOT confused by 5' edge to read 410531 - best edge read 266274 len 5338 erate 0.0206 score 5228.04 - alt edge len 1828 erate 0.0308 score 1771.70 - absdiff 3456.34 percdiff 98.7563 tig 2536 read 232080 pos 5010-14275 IS confused by 5' edge to read 434851 - best edge read 266274 len 5338 erate 0.0206 score 5228.04 - alt edge len 4498 erate 0.0113 score 4447.17 - absdiff 780.86 percdiff 16.1416 tig 2536 read 266274 pos 8937-14780 NOT confused by 3' edge to read 137291 - best edge read 266277 len 5758 erate 0.0084 score 5709.63 - alt edge len 1447 erate 0.0292 score 1404.75 - absdiff 4304.89 percdiff 121.0193 tig 2536 read 266274 pos 8937-14780 NOT confused by 3' edge to read 137293 - best edge read 266277 len 5758 erate 0.0084 score 5709.63 - alt edge len 1460 erate 0.0214 score 1428.76 - absdiff 4280.88 percdiff 119.9396 tig 2536 read 266274 pos 8937-14780 NOT confused by 5' edge to read 327576 - best edge read 232080 len 5353 erate 0.0223 score 5233.63 - alt edge len 1708 erate 0.0165 score 1679.82 - absdiff 3553.81 percdiff 102.8086 tig 2536 read 266274 pos 8937-14780 NOT confused by 5' edge to read 327577 - best edge read 232080 len 5353 erate 0.0223 score 5233.63 - alt edge len 1649 erate 0.0164 score 1621.96 - absdiff 3611.67 percdiff 105.3644 tig 2536 read 266274 pos 8937-14780 NOT confused by 3' edge to read 410527 - best edge read 266277 len 5758 erate 0.0084 score 5709.63 - alt edge len 2351 erate 0.0252 score 2291.75 - absdiff 3417.88 percdiff 85.4321 tig 2536 read 266274 pos 8937-14780 NOT confused by 3' edge to read 410529 - best edge read 266277 len 5758 erate 0.0084 score 5709.63 - alt edge len 2345 erate 0.0257 score 2284.73 - absdiff 3424.90 percdiff 85.6828 tig 2536 read 266274 pos 8937-14780 NOT confused by 3' edge to read 410531 - best edge read 266277 len 5758 erate 0.0084 score 5709.63 - alt edge len 2317 erate 0.0264 score 2255.83 - absdiff 3453.80 percdiff 86.7194 tig 2536 read 266274 pos 8937-14780 NOT confused by 5' edge to read 414041 - best edge read 232080 len 5353 erate 0.0223 score 5233.63 - alt edge len 2777 erate 0.0133 score 2740.07 - absdiff 2493.56 percdiff 62.5447 tig 2536 read 266274 pos 8937-14780 IS confused by 3' edge to read 434851 - best edge read 266277 len 5758 erate 0.0084 score 5709.63 - alt edge len 4999 erate 0.0096 score 4951.01 - absdiff 758.62 percdiff 14.2322 tig 2536 read 266274 pos 8937-14780 NOT confused by 3' edge to read 470392 - best edge read 266277 len 5758 erate 0.0084 score 5709.63 - alt edge len 689 erate 0.0175 score 676.94 - absdiff 5032.69 percdiff 157.6022 tig 2536 read 266277 pos 9022-15694 NOT confused by 5' edge to read 327576 - best edge read 266274 len 5748 erate 0.0084 score 5699.72 - alt edge len 1616 erate 0.0198 score 1584.00 - absdiff 4115.71 percdiff 113.0113 tig 2536 read 266277 pos 9022-15694 NOT confused by 5' edge to read 327577 - best edge read 266274 len 5748 erate 0.0084 score 5699.72 - alt edge len 1559 erate 0.0173 score 1532.03 - absdiff 4167.69 percdiff 115.2609 tig 2536 read 266277 pos 9022-15694 NOT confused by 5' edge to read 414041 - best edge read 266274 len 5748 erate 0.0084 score 5699.72 - alt edge len 2684 erate 0.0145 score 2645.08 - absdiff 3054.63 percdiff 73.2105 saved region 8928:15455 - 2 best edges are potentially confused break tig 2536 into up to 2 pieces: 0 8428 unique (length 8428) 8428 15694 repeat (length 7266) Creating Unitig 91007 Creating Unitig 91008 For tig 2536 unique region 0 8428 - 0/ 13 reads repeat/unique - unitig 91007 created. For tig 2536 repeat region 8428 15694 - 59/ 0 reads repeat/unique - unitig 91008 created. Annotating repeats in reads for tig 2539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2541/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8981:10714 - closest 5' read 64983 ( +5434) 3547:10700 ( -14) saved region 8981:10714 - closest 3' read 226581 ( -31) 9012:13779 ( +3065) search for confused edges: discard region 8981:10714 - no confusion in best edges Annotating repeats in reads for tig 2542/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2545/90584. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 0:4951 - contained in read 330748 0- 7647 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2546/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11753:16590 - closest 5' read 12014 ( +7851) 3902:12304 ( -4286) saved region 11753:16590 - closest 3' read 153621 ( -2) 11755:17502 ( +912) search for confused edges: discard region 11753:16590 - no confusion in best edges Annotating repeats in reads for tig 2547/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2548/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 14855:10750 - contained in read 258220 4021- 11601 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2553/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2560/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5692:6484 - contained in read 281172 0- 7909 discard region 6721:10837 - contained in read 340369 2942- 13262 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2565/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4493:8484 - closest read 347475 ( +35) 4458:8993 ( +509) (contained) saved region 4493:8484 - closest read 286311 ( +27) 4466:9034 ( +550) (contained) saved region 4493:8484 - closest read 70380 ( +26) 4467:8996 ( +512) (contained) saved region 4493:8484 - closest read 472783 ( +18) 4475:9008 ( +524) (contained) saved region 4493:8484 - closest read 502857 ( +18) 4475:9002 ( +518) (contained) saved region 4493:8484 - closest 5' read 286311 ( +27) 4466:9034 ( +550) saved region 4493:8484 - closest 3' read 347475 ( +35) 4458:8993 ( +509) search for confused edges: discard region 4493:8484 - no confusion in best edges Annotating repeats in reads for tig 2569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2573/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2574/90584. Annotated with 74 overlaps. Scan reads to discard spanned repeats. discard region 2700:8890 - contained in read 471611 737- 8890 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2575/90584. Annotated with 315 overlaps. Scan reads to discard spanned repeats. discard region 10841:13441 - contained in read 294267 6134- 13452 thickest edges to the repeat regions: saved region 32:8028 - closest 5' read 12396 ( +32) 0:6714 ( -1314) saved region 32:8028 - closest 3' read 294268 ( -6024) 6056:13375 ( +5347) search for confused edges: tig 2575 read 12396 pos 0-6714 IS confused by 3' edge to read 82195 - best edge read 89618 len 6382 erate 0.0238 score 6230.11 - alt edge len 5706 erate 0.0312 score 5527.97 - absdiff 702.14 percdiff 11.9430 tig 2575 read 12396 pos 0-6714 IS confused by 3' edge to read 157196 - best edge read 89618 len 6382 erate 0.0238 score 6230.11 - alt edge len 5947 erate 0.0200 score 5828.06 - absdiff 402.05 percdiff 6.6685 tig 2575 read 12396 pos 0-6714 NOT confused by 3' edge to read 299519 - best edge read 89618 len 6382 erate 0.0238 score 6230.11 - alt edge len 4104 erate 0.0332 score 3967.75 - absdiff 2262.36 percdiff 44.3694 tig 2575 read 12396 pos 0-6714 NOT confused by 3' edge to read 358324 - best edge read 89618 len 6382 erate 0.0238 score 6230.11 - alt edge len 3470 erate 0.0095 score 3437.04 - absdiff 2793.07 percdiff 57.7849 tig 2575 read 12396 pos 0-6714 NOT confused by 3' edge to read 524515 - best edge read 89618 len 6382 erate 0.0238 score 6230.11 - alt edge len 506 erate 0.0239 score 493.91 - absdiff 5736.20 percdiff 170.6184 tig 2575 read 89618 pos 298-7853 NOT confused by 3' edge to read 35998 - best edge read 12396 len 6416 erate 0.0238 score 6263.30 - alt edge len 1740 erate 0.0155 score 1713.03 - absdiff 4550.27 percdiff 114.0943 tig 2575 read 89618 pos 298-7853 IS confused by 5' edge to read 82195 - best edge read 157198 len 7130 erate 0.0210 score 6980.27 - alt edge len 6884 erate 0.0368 score 6630.67 - absdiff 349.60 percdiff 5.1371 tig 2575 read 89618 pos 298-7853 IS confused by 5' edge to read 157196 - best edge read 157198 len 7130 erate 0.0210 score 6980.27 - alt edge len 7125 erate 0.0242 score 6952.57 - absdiff 27.69 percdiff 0.3975 tig 2575 read 89618 pos 298-7853 NOT confused by 3' edge to read 272271 - best edge read 12396 len 6416 erate 0.0238 score 6263.30 - alt edge len 2288 erate 0.0275 score 2225.08 - absdiff 4038.22 percdiff 95.1470 tig 2575 read 89618 pos 298-7853 IS confused by 5' edge to read 299519 - best edge read 157198 len 7130 erate 0.0210 score 6980.27 - alt edge len 5280 erate 0.0418 score 5059.30 - absdiff 1920.97 percdiff 31.9110 tig 2575 read 89618 pos 298-7853 NOT confused by 5' edge to read 358324 - best edge read 157198 len 7130 erate 0.0210 score 6980.27 - alt edge len 4600 erate 0.0148 score 4531.92 - absdiff 2448.35 percdiff 42.5349 tig 2575 read 157198 pos 722-7981 NOT confused by 5' edge to read 35998 - best edge read 89618 len 7131 erate 0.0210 score 6981.25 - alt edge len 1317 erate 0.0076 score 1306.99 - absdiff 5674.26 percdiff 136.9231 tig 2575 read 157198 pos 722-7981 NOT confused by 5' edge to read 180658 - best edge read 89618 len 7131 erate 0.0210 score 6981.25 - alt edge len 2749 erate 0.0367 score 2648.11 - absdiff 4333.14 percdiff 89.9984 tig 2575 read 157198 pos 722-7981 NOT confused by 5' edge to read 272271 - best edge read 89618 len 7131 erate 0.0210 score 6981.25 - alt edge len 1870 erate 0.0262 score 1821.01 - absdiff 5160.24 percdiff 117.2482 tig 2575 read 294267 pos 6134-13452 IS confused by 5' edge to read 439667 - best edge read 157198 len 1847 erate 0.0397 score 1773.67 - alt edge len 600 erate 0.0336 score 579.84 - absdiff 1193.83 percdiff 101.4512 saved region 32:8028 - 6 best edges are potentially confused break tig 2575 into up to 2 pieces: 0 8528 repeat (length 8528) 8528 13452 unique (length 4924) Creating Unitig 91009 Creating Unitig 91010 For tig 2575 repeat region 0 8528 - 122/ 0 reads repeat/unique - unitig 91009 created. For tig 2575 unique region 8528 13452 - 0/ 4 reads repeat/unique - unitig 91010 created. Annotating repeats in reads for tig 2576/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 1883:10057 - contained in read 518826 864- 10619 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2581/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9978:16489 - closest read 305326 ( +21) 9957:16489 ( +0) (contained) saved region 9978:16489 - closest 5' read 305326 ( +21) 9957:16489 ( +0) saved region 9978:16489 - closest 3' read 305326 ( +21) 9957:16489 ( +0) search for confused edges: discard region 9978:16489 - no confusion in best edges Annotating repeats in reads for tig 2583/90584. Annotated with 70 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9983:16327 - closest 5' read 331714 ( +3490) 6493:16064 ( -263) saved region 9983:16327 - closest 3' read 122696 ( -923) 10906:19970 ( +3643) search for confused edges: tig 2583 read 331714 pos 6493-16064 IS confused by 5' edge to read 42824 - best edge read 64952 len 5808 erate 0.0259 score 5657.57 - alt edge len 4341 erate 0.0240 score 4236.82 - absdiff 1420.76 percdiff 28.7184 tig 2583 read 331714 pos 6493-16064 NOT confused by 5' edge to read 55884 - best edge read 64952 len 5808 erate 0.0259 score 5657.57 - alt edge len 3434 erate 0.0198 score 3366.01 - absdiff 2291.57 percdiff 50.7906 tig 2583 read 331714 pos 6493-16064 NOT confused by 5' edge to read 55885 - best edge read 64952 len 5808 erate 0.0259 score 5657.57 - alt edge len 3428 erate 0.0228 score 3349.84 - absdiff 2307.73 percdiff 51.2407 tig 2583 read 331714 pos 6493-16064 NOT confused by 5' edge to read 528083 - best edge read 64952 len 5808 erate 0.0259 score 5657.57 - alt edge len 3278 erate 0.0254 score 3194.74 - absdiff 2462.83 percdiff 55.6427 tig 2583 read 64952 pos 10256-16274 IS confused by 5' edge to read 42824 - best edge read 122696 len 5368 erate 0.0185 score 5268.69 - alt edge len 4563 erate 0.0200 score 4471.74 - absdiff 796.95 percdiff 16.3638 tig 2583 read 64952 pos 10256-16274 IS confused by 5' edge to read 55884 - best edge read 122696 len 5368 erate 0.0185 score 5268.69 - alt edge len 3656 erate 0.0189 score 3586.90 - absdiff 1681.79 percdiff 37.9826 tig 2583 read 64952 pos 10256-16274 IS confused by 5' edge to read 55885 - best edge read 122696 len 5368 erate 0.0185 score 5268.69 - alt edge len 3650 erate 0.0225 score 3567.88 - absdiff 1700.82 percdiff 38.4950 tig 2583 read 64952 pos 10256-16274 IS confused by 5' edge to read 528083 - best edge read 122696 len 5368 erate 0.0185 score 5268.69 - alt edge len 3501 erate 0.0315 score 3390.72 - absdiff 1877.97 percdiff 43.3742 tig 2583 read 122696 pos 10906-19970 IS confused by 5' edge to read 343080 - best edge read 64952 len 5386 erate 0.0185 score 5286.36 - alt edge len 4195 erate 0.0366 score 4041.46 - absdiff 1244.90 percdiff 26.6921 saved region 9983:16327 - 6 best edges are potentially confused break tig 2583 into up to 3 pieces: 0 9483 unique (length 9483) 9483 16827 repeat (length 7344) 16827 20266 unique (length 3439) Creating Unitig 91011 Creating Unitig 91012 Creating Unitig 91013 For tig 2583 unique region 0 9483 - 0/ 13 reads repeat/unique - unitig 91011 created. For tig 2583 repeat region 9483 16827 - 21/ 0 reads repeat/unique - unitig 91012 created. For tig 2583 unique region 16827 20266 - 0/ 2 reads repeat/unique - unitig 91013 created. Annotating repeats in reads for tig 2585/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2587/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 6581:11173 - contained in read 168845 5592- 13461 discard region 18239:20706 - contained in read 109334 17426- 25346 discard region 23575:25409 - contained in read 451641 17830- 25414 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2588/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6887 - closest 5' read 305324 ( +0) 0:6848 ( -39) saved region 0:6887 - closest 3' read 305325 ( -285) 285:6887 ( +0) search for confused edges: tig 2588 read 305324 pos 0-6848 NOT confused by 3' edge to read 152361 - best edge read 305325 len 6563 erate 0.0305 score 6362.83 - alt edge len 1447 erate 0.0214 score 1416.03 - absdiff 4946.79 percdiff 127.1855 tig 2588 read 305324 pos 0-6848 IS confused by 3' edge to read 305326 - best edge read 305325 len 6563 erate 0.0305 score 6362.83 - alt edge len 6457 erate 0.0322 score 6249.08 - absdiff 113.74 percdiff 1.8038 tig 2588 read 305324 pos 0-6848 NOT confused by 3' edge to read 415420 - best edge read 305325 len 6563 erate 0.0305 score 6362.83 - alt edge len 1548 erate 0.0265 score 1506.98 - absdiff 4855.85 percdiff 123.4046 saved region 0:6887 - 1 best edges are potentially confused Annotating repeats in reads for tig 2591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2593/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:3664 - contained in read 308756 0- 6496 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2604/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 1809:5693 - contained in read 315942 0- 10460 discard region 6518:7850 - contained in read 315942 0- 10460 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2606/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6121:7764 - contained in read 362493 740- 7771 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2609/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 13251:14328 - contained in read 214887 8208- 16283 discard region 14705:17149 - contained in read 305605 11380- 18311 thickest edges to the repeat regions: saved region 7760:11989 - closest 5' read 108727 ( +5377) 2383:9678 ( -2311) saved region 7760:11989 - closest 3' read 214887 ( -448) 8208:16283 ( +4294) search for confused edges: tig 2609 read 108727 pos 2383-9678 IS confused by 3' edge to read 203438 - best edge read 214887 len 1470 erate 0.0361 score 1416.93 - alt edge len 944 erate 0.0392 score 907.00 - absdiff 509.94 percdiff 43.8858 tig 2609 read 108727 pos 2383-9678 IS confused by 3' edge to read 305605 - best edge read 214887 len 1470 erate 0.0361 score 1416.93 - alt edge len 877 erate 0.0376 score 844.02 - absdiff 572.91 percdiff 50.6784 saved region 7760:11989 - 2 best edges are potentially confused break tig 2609 into up to 3 pieces: 0 7260 unique (length 7260) 7260 12489 repeat (length 5229) 12489 18311 unique (length 5822) Creating Unitig 91014 Creating Unitig 91015 Creating Unitig 91016 For tig 2609 unique region 0 7260 - 0/ 12 reads repeat/unique - unitig 91014 created. For tig 2609 repeat region 7260 12489 - 2/ 0 reads repeat/unique - unitig 91016 created. For tig 2609 unique region 12489 18311 - 0/ 26 reads repeat/unique - unitig 91015 created. Annotating repeats in reads for tig 2610/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4688:5460 - contained in read 391025 3578- 9291 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2612/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2915:0 - contained in read 321161 0- 6771 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2613/90584. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 12639:11490 - contained in read 397454 6576- 12242 thickest edges to the repeat regions: saved region 758:8418 - closest 5' read 154850 ( +758) 0:8129 ( -289) saved region 758:8418 - closest 3' read 397456 ( -5814) 6572:11027 ( +2609) search for confused edges: tig 2613 read 125083 pos 827-8366 IS confused by 5' edge to read 273057 - best edge read 154850 len 7302 erate 0.0248 score 7120.91 - alt edge len 6967 erate 0.0412 score 6679.96 - absdiff 440.95 percdiff 6.3902 tig 2613 read 125083 pos 827-8366 IS confused by 5' edge to read 393683 - best edge read 154850 len 7302 erate 0.0248 score 7120.91 - alt edge len 7147 erate 0.0167 score 7027.65 - absdiff 93.27 percdiff 1.3184 tig 2613 read 125083 pos 827-8366 IS confused by 5' edge to read 393684 - best edge read 154850 len 7302 erate 0.0248 score 7120.91 - alt edge len 7143 erate 0.0160 score 7028.71 - absdiff 92.20 percdiff 1.3032 tig 2613 read 397453 pos 6579-12243 IS confused by 3' edge to read 273057 - best edge read 125083 len 1787 erate 0.0410 score 1713.73 - alt edge len 1228 erate 0.0173 score 1206.76 - absdiff 506.98 percdiff 34.7187 tig 2613 read 397453 pos 6579-12243 IS confused by 3' edge to read 393683 - best edge read 125083 len 1787 erate 0.0410 score 1713.73 - alt edge len 1410 erate 0.0307 score 1366.71 - absdiff 347.02 percdiff 22.5305 tig 2613 read 397453 pos 6579-12243 IS confused by 3' edge to read 393684 - best edge read 125083 len 1787 erate 0.0410 score 1713.73 - alt edge len 1406 erate 0.0215 score 1375.77 - absdiff 337.96 percdiff 21.8781 saved region 758:8418 - 6 best edges are potentially confused break tig 2613 into up to 3 pieces: 0 258 unique (length 258) 258 8918 repeat (length 8660) 8918 15440 unique (length 6522) Creating Unitig 91017 Creating Unitig 91018 Creating Unitig 91019 For tig 2613 unique region 0 258 - 0/ 1 reads repeat/unique - unitig 91017 created. For tig 2613 repeat region 258 8918 - 17/ 0 reads repeat/unique - unitig 91018 created. For tig 2613 unique region 8918 15440 - 0/ 16 reads repeat/unique - unitig 91019 created. Annotating repeats in reads for tig 2617/90584. Annotated with 68 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7064:8141 - closest read 322441 ( +7064) 0:8439 ( +298) (contained) saved region 7064:8141 - closest read 116932 ( +4303) 2761:8427 ( +286) (contained) saved region 7064:8141 - closest read 194611 ( +49) 7015:9638 ( +1497) (contained) saved region 7064:8141 - closest read 419015 ( +43) 7021:9204 ( +1063) (contained) saved region 7064:8141 - closest read 369104 ( +0) 7064:9227 ( +1086) (contained) saved region 7064:8141 - closest 5' read 194611 ( +49) 7015:9638 ( +1497) saved region 7064:8141 - closest 3' read 322441 ( +7064) 0:8439 ( +298) saved region 11977:18645 - closest 5' read 176132 ( +3002) 8975:18634 ( -11) saved region 11977:18645 - closest 3' read 220175 ( -4175) 16152:18667 ( +22) search for confused edges: tig 2617 read 176132 pos 8975-18634 IS confused by 3' edge to read 463931 - best edge read 228797 len 1069 erate 0.0419 score 1024.21 - alt edge len 1173 erate 0.0214 score 1147.90 - absdiff 123.69 percdiff 11.3888 discard region 7064:8141 - no confusion in best edges saved region 11977:18645 - 1 best edges are potentially confused break tig 2617 into up to 3 pieces: 0 11477 unique (length 11477) 11477 19145 repeat (length 7668) 19145 25015 unique (length 5870) Creating Unitig 91020 Creating Unitig 91021 Creating Unitig 91022 For tig 2617 unique region 0 11477 - 0/ 22 reads repeat/unique - unitig 91020 created. For tig 2617 repeat region 11477 19145 - 7/ 0 reads repeat/unique - unitig 91021 created. For tig 2617 unique region 19145 25015 - 0/ 2 reads repeat/unique - unitig 91022 created. Annotating repeats in reads for tig 2618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2624/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 12062:12693 - contained in read 153319 1537- 15421 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2637/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10017:11500 - contained in read 232651 2877- 13087 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2638/90584. Annotated with 44 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 689:8138 - closest 5' read 283946 ( +178) 511:7960 ( -178) saved region 689:8138 - closest 3' read 103759 ( -615) 1304:8142 ( +4) search for confused edges: discard region 689:8138 - no confusion in best edges Annotating repeats in reads for tig 2641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2646/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 19:3998 - contained in read 335765 0- 5963 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2647/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1077:2230 - contained in read 337069 0- 6078 discard region 3867:5213 - contained in read 337069 0- 6078 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2649/90584. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 8319:12454 - contained in read 337411 6250- 13385 thickest edges to the repeat regions: saved region 2590:8210 - closest 5' read 379385 ( +5) 2585:8055 ( -155) saved region 2590:8210 - closest 3' read 337411 ( -3660) 6250:13385 ( +5175) search for confused edges: tig 2649 read 475390 pos 0-7418 IS confused by 3' edge to read 196949 - best edge read 379385 len 4822 erate 0.0141 score 4754.01 - alt edge len 3993 erate 0.0075 score 3963.05 - absdiff 790.96 percdiff 18.1473 tig 2649 read 475390 pos 0-7418 IS confused by 3' edge to read 350102 - best edge read 379385 len 4822 erate 0.0141 score 4754.01 - alt edge len 4425 erate 0.0077 score 4390.93 - absdiff 363.08 percdiff 7.9406 tig 2649 read 475390 pos 0-7418 IS confused by 3' edge to read 385462 - best edge read 379385 len 4822 erate 0.0141 score 4754.01 - alt edge len 4817 erate 0.0075 score 4780.87 - absdiff 26.86 percdiff 0.5635 tig 2649 read 475390 pos 0-7418 IS confused by 3' edge to read 406632 - best edge read 379385 len 4822 erate 0.0141 score 4754.01 - alt edge len 4820 erate 0.0089 score 4777.10 - absdiff 23.09 percdiff 0.4846 saved region 2590:8210 - 4 best edges are potentially confused break tig 2649 into up to 3 pieces: 0 2090 unique (length 2090) 2090 8710 repeat (length 6620) 8710 13591 unique (length 4881) Creating Unitig 91023 Creating Unitig 91024 Creating Unitig 91025 For tig 2649 unique region 0 2090 - 0/ 3 reads repeat/unique - unitig 91023 created. For tig 2649 repeat region 2090 8710 - 2/ 0 reads repeat/unique - unitig 91024 created. For tig 2649 unique region 8710 13591 - 0/ 4 reads repeat/unique - unitig 91025 created. Annotating repeats in reads for tig 2650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2663/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 206:7401 - contained in read 343252 0- 10326 discard region 14932:17300 - contained in read 456438 13334- 17300 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2673/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 3669:4814 - contained in read 185447 0- 6479 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2674/90584. Annotated with 97 overlaps. Scan reads to discard spanned repeats. discard region 16995:15833 - contained in read 349228 13811- 22070 thickest edges to the repeat regions: saved region 5271:12988 - closest 5' read 419945 ( +4733) 538:12968 ( -20) saved region 5271:12988 - closest 3' read 195721 ( -4126) 9397:14812 ( +1824) saved region 13812:15575 - closest read 349228 ( +1) 13811:22070 ( +6495) (contained) saved region 13812:15575 - closest 5' read 349228 ( +1) 13811:22070 ( +6495) saved region 13812:15575 - closest 3' read 349228 ( +1) 13811:22070 ( +6495) search for confused edges: tig 2674 read 353467 pos 8496-12977 IS confused by 3' edge to read 266183 - best edge read 419945 len 4472 erate 0.0204 score 4380.77 - alt edge len 2457 erate 0.0147 score 2420.88 - absdiff 1959.89 percdiff 57.6298 tig 2674 read 269982 pos 9370-12979 IS confused by 3' edge to read 266183 - best edge read 353467 len 3607 erate 0.0253 score 3515.74 - alt edge len 1569 erate 0.0187 score 1539.66 - absdiff 1976.08 percdiff 78.1771 tig 2674 read 195721 pos 9397-14812 IS confused by 3' edge to read 266183 - best edge read 269982 len 3582 erate 0.0249 score 3492.81 - alt edge len 1551 erate 0.0130 score 1530.84 - absdiff 1961.97 percdiff 78.1095 saved region 5271:12988 - 3 best edges are potentially confused discard region 13812:15575 - no confusion in best edges break tig 2674 into up to 3 pieces: 0 4771 unique (length 4771) 4771 13488 repeat (length 8717) 13488 22077 unique (length 8589) Creating Unitig 91026 Creating Unitig 91027 Creating Unitig 91028 For tig 2674 unique region 0 4771 - 0/ 11 reads repeat/unique - unitig 91026 created. For tig 2674 repeat region 4771 13488 - 26/ 0 reads repeat/unique - unitig 91027 created. For tig 2674 unique region 13488 22077 - 0/ 7 reads repeat/unique - unitig 91028 created. Annotating repeats in reads for tig 2678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2680/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 1409:5027 - contained in read 497493 400- 6508 thickest edges to the repeat regions: saved region 5132:8904 - closest 5' read 295229 ( +0) 5132:7436 ( -1468) saved region 5132:8904 - closest 3' read 271637 ( -23) 5155:11002 ( +2098) search for confused edges: discard region 5132:8904 - no confusion in best edges Annotating repeats in reads for tig 2685/90584. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 5784:6414 - contained in read 429366 2044- 9041 discard region 6481:9755 - contained in read 104062 2493- 11938 thickest edges to the repeat regions: saved region 9819:12037 - closest read 521424 ( +2834) 6985:12044 ( +7) (contained) saved region 9819:12037 - closest read 124074 ( +2775) 7044:12176 ( +139) (contained) saved region 9819:12037 - closest read 113867 ( +2466) 7353:12087 ( +50) (contained) saved region 9819:12037 - closest read 113868 ( +2464) 7355:12263 ( +226) (contained) saved region 9819:12037 - closest read 116912 ( +2008) 7811:12182 ( +145) (contained) saved region 9819:12037 - closest read 99917 ( +1447) 8372:12038 ( +1) (contained) saved region 9819:12037 - closest read 143825 ( +1368) 8451:12147 ( +110) (contained) saved region 9819:12037 - closest 5' read 113868 ( +2464) 7355:12263 ( +226) saved region 9819:12037 - closest 3' read 521424 ( +2834) 6985:12044 ( +7) search for confused edges: discard region 9819:12037 - no confusion in best edges Annotating repeats in reads for tig 2687/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2690/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2691/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3870:7446 - contained in read 299113 1364- 7446 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2693/90584. Annotated with 312 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1736:9026 - closest 5' read 82195 ( +3) 1733:8627 ( -399) saved region 1736:9026 - closest 3' read 157196 ( -4) 1740:9026 ( +0) search for confused edges: tig 2693 read 82195 pos 1733-8627 IS confused by 3' edge to read 12396 - best edge read 157196 len 6887 erate 0.0363 score 6637.00 - alt edge len 5574 erate 0.0307 score 5402.88 - absdiff 1234.12 percdiff 20.5006 tig 2693 read 82195 pos 1733-8627 NOT confused by 3' edge to read 35998 - best edge read 157196 len 6887 erate 0.0363 score 6637.00 - alt edge len 1075 erate 0.0122 score 1061.88 - absdiff 5575.12 percdiff 144.8292 tig 2693 read 82195 pos 1733-8627 IS confused by 3' edge to read 89618 - best edge read 157196 len 6887 erate 0.0363 score 6637.00 - alt edge len 6715 erate 0.0368 score 6467.89 - absdiff 169.11 percdiff 2.5809 tig 2693 read 82195 pos 1733-8627 IS confused by 3' edge to read 157198 - best edge read 157196 len 6887 erate 0.0363 score 6637.00 - alt edge len 6846 erate 0.0330 score 6620.08 - absdiff 16.92 percdiff 0.2553 tig 2693 read 82195 pos 1733-8627 NOT confused by 3' edge to read 272271 - best edge read 157196 len 6887 erate 0.0363 score 6637.00 - alt edge len 1624 erate 0.0136 score 1601.91 - absdiff 5035.09 percdiff 122.2270 tig 2693 read 82195 pos 1733-8627 IS confused by 3' edge to read 299681 - best edge read 157196 len 6887 erate 0.0363 score 6637.00 - alt edge len 4835 erate 0.0227 score 4725.25 - absdiff 1911.76 percdiff 33.6510 tig 2693 read 82195 pos 1733-8627 IS confused by 3' edge to read 387618 - best edge read 157196 len 6887 erate 0.0363 score 6637.00 - alt edge len 6833 erate 0.0094 score 6768.77 - absdiff 131.77 percdiff 1.9658 tig 2693 read 82195 pos 1733-8627 NOT confused by 3' edge to read 396216 - best edge read 157196 len 6887 erate 0.0363 score 6637.00 - alt edge len 3152 erate 0.0359 score 3038.84 - absdiff 3598.16 percdiff 74.3740 tig 2693 read 82195 pos 1733-8627 IS confused by 3' edge to read 439667 - best edge read 157196 len 6887 erate 0.0363 score 6637.00 - alt edge len 5565 erate 0.0347 score 5371.89 - absdiff 1265.11 percdiff 21.0695 saved region 1736:9026 - 6 best edges are potentially confused break tig 2693 into up to 2 pieces: 0 1236 unique (length 1236) 1236 9026 repeat (length 7790) Creating Unitig 91029 Creating Unitig 91030 For tig 2693 unique region 0 1236 - 0/ 5 reads repeat/unique - unitig 91029 created. For tig 2693 repeat region 1236 9026 - 73/ 0 reads repeat/unique - unitig 91030 created. Annotating repeats in reads for tig 2695/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5592 - closest read 43095 ( +0) 0:5615 ( +23) (contained) saved region 0:5592 - closest 5' read 43095 ( +0) 0:5615 ( +23) saved region 0:5592 - closest 3' read 43095 ( +0) 0:5615 ( +23) search for confused edges: discard region 0:5592 - no confusion in best edges Annotating repeats in reads for tig 2702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2703/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2709/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5440:6295 - contained in read 369400 0- 6295 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2711/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 179:3848 - contained in read 369722 0- 6780 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2713/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2:1017 - contained in read 369801 0- 6824 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2714/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 10455:12550 - contained in read 389448 4804- 12552 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2717/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 3444:7169 - contained in read 456785 0- 7784 discard region 7274:10125 - contained in read 483146 6374- 11996 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2720/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 2697:4661 - contained in read 371243 0- 7879 discard region 4646:6559 - contained in read 371243 0- 7879 discard region 8923:10066 - contained in read 158506 5025- 10719 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2725/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 9158:13842 - contained in read 284985 7787- 13842 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2728/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2738/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5766:8198 - closest read 284074 ( +0) 5766:8259 ( +61) (contained) saved region 5766:8198 - closest 5' read 284074 ( +0) 5766:8259 ( +61) saved region 5766:8198 - closest 3' read 284074 ( +0) 5766:8259 ( +61) search for confused edges: discard region 5766:8198 - no confusion in best edges Annotating repeats in reads for tig 2741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2751/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4309:8 - contained in read 165088 0- 6665 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2754/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1867:3571 - closest 5' read 248519 ( +1819) 48:3564 ( -7) saved region 1867:3571 - closest 3' read 386727 ( -116) 1983:3576 ( +5) search for confused edges: discard region 1867:3571 - no confusion in best edges Annotating repeats in reads for tig 2756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2758/90584. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 72:4800 - contained in read 450322 0- 8438 discard region 6081:7597 - contained in read 450322 0- 8438 discard region 14217:15688 - contained in read 393096 13342- 17631 thickest edges to the repeat regions: saved region 8963:14017 - closest read 406424 ( +4277) 4686:14122 ( +105) (contained) saved region 8963:14017 - closest 5' read 406424 ( +4277) 4686:14122 ( +105) saved region 8963:14017 - closest 3' read 406424 ( +4277) 4686:14122 ( +105) search for confused edges: discard region 8963:14017 - no confusion in best edges Annotating repeats in reads for tig 2763/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 3072:4116 - contained in read 396361 0- 6045 discard region 6814:8158 - contained in read 176389 3147- 8160 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2764/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1827:1 - contained in read 397172 0- 8844 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2768/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2771/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 5216:9388 - contained in read 209735 769- 9393 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2773/90584. Annotated with 55 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6926:9199 - closest read 421025 ( +4541) 2385:9201 ( +2) (contained) saved region 6926:9199 - closest 5' read 421025 ( +4541) 2385:9201 ( +2) saved region 6926:9199 - closest 3' read 421025 ( +4541) 2385:9201 ( +2) search for confused edges: discard region 6926:9199 - no confusion in best edges Annotating repeats in reads for tig 2783/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 8888:13358 - contained in read 437666 7944- 18157 discard region 14335:18415 - contained in read 380131 10465- 18415 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2785/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2786/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:2633 - contained in read 302744 0- 6493 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2794/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7123:15255 - closest read 36809 ( +1745) 5378:15558 ( +303) (contained) saved region 7123:15255 - closest read 229103 ( +0) 7123:17509 ( +2254) (contained) saved region 7123:15255 - closest 5' read 229103 ( +0) 7123:17509 ( +2254) saved region 7123:15255 - closest 3' read 36809 ( +1745) 5378:15558 ( +303) search for confused edges: discard region 7123:15255 - no confusion in best edges Annotating repeats in reads for tig 2795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2796/90584. Annotated with 70 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6808:12208 - closest read 139648 ( +6) 6802:12224 ( +16) (contained) saved region 6808:12208 - closest 5' read 139648 ( +6) 6802:12224 ( +16) saved region 6808:12208 - closest 3' read 139648 ( +6) 6802:12224 ( +16) search for confused edges: discard region 6808:12208 - no confusion in best edges Annotating repeats in reads for tig 2800/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3379:5112 - contained in read 412323 0- 6919 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2808/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2812/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 5629:12484 - contained in read 263504 3838- 12500 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2815/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7745:13618 - closest 5' read 105746 ( +1855) 5890:12551 ( -1067) saved region 7745:13618 - closest 3' read 405181 ( -57) 7802:13618 ( +0) search for confused edges: tig 2815 read 105746 pos 5890-12551 IS confused by 3' edge to read 405182 - best edge read 405181 len 4749 erate 0.0122 score 4691.06 - alt edge len 4588 erate 0.0125 score 4530.65 - absdiff 160.41 percdiff 3.4790 tig 2815 read 105746 pos 5890-12551 IS confused by 3' edge to read 416892 - best edge read 405181 len 4749 erate 0.0122 score 4691.06 - alt edge len 4384 erate 0.0080 score 4348.93 - absdiff 342.13 percdiff 7.5693 saved region 7745:13618 - 2 best edges are potentially confused break tig 2815 into up to 2 pieces: 0 7245 unique (length 7245) 7245 13618 repeat (length 6373) Creating Unitig 91031 Creating Unitig 91032 For tig 2815 unique region 0 7245 - 0/ 11 reads repeat/unique - unitig 91031 created. For tig 2815 repeat region 7245 13618 - 17/ 0 reads repeat/unique - unitig 91032 created. Annotating repeats in reads for tig 2819/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11856:15491 - closest read 367378 ( +1720) 10136:15494 ( +3) (contained) saved region 11856:15491 - closest 5' read 367378 ( +1720) 10136:15494 ( +3) saved region 11856:15491 - closest 3' read 367378 ( +1720) 10136:15494 ( +3) search for confused edges: tig 2819 read 416311 pos 13888-24311 IS confused by 3' edge to read 104578 - best edge read 367375 len 1586 erate 0.0435 score 1517.01 - alt edge len 1570 erate 0.0376 score 1510.97 - absdiff 6.04 percdiff 0.3990 saved region 11856:15491 - 1 best edges are potentially confused break tig 2819 into up to 3 pieces: 0 11356 unique (length 11356) 11356 15991 repeat (length 4635) 15991 25292 unique (length 9301) Creating Unitig 91033 Creating Unitig 91034 Creating Unitig 91035 For tig 2819 unique region 0 11356 - 0/ 21 reads repeat/unique - unitig 91033 created. For tig 2819 repeat region 11356 15991 - 22/ 0 reads repeat/unique - unitig 91034 created. For tig 2819 unique region 15991 25292 - 0/ 25 reads repeat/unique - unitig 91035 created. Annotating repeats in reads for tig 2822/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 13:1517 - contained in read 428853 0- 3748 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2830/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4948:4425 - contained in read 431756 0- 8658 discard region 7904:8668 - contained in read 431755 6- 8677 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2835/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2836/90584. Annotated with 56 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3:13973 - closest 5' read 196335 ( +3) 0:10524 ( -3449) saved region 3:13973 - closest 3' read 434272 ( -3930) 3933:13983 ( +10) search for confused edges: tig 2836 read 196335 pos 0-10524 NOT confused by 5' edge to read 159718 - best edge read 196334 len 9297 erate 0.0100 score 9204.03 - alt edge len 3699 erate 0.0103 score 3660.90 - absdiff 5543.13 percdiff 86.1743 tig 2836 read 196335 pos 0-10524 NOT confused by 5' edge to read 494249 - best edge read 196334 len 9297 erate 0.0100 score 9204.03 - alt edge len 7135 erate 0.0125 score 7045.81 - absdiff 2158.22 percdiff 26.5629 discard region 3:13973 - no confusion in best edges Annotating repeats in reads for tig 2838/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4727:7312 - closest read 188429 ( +1707) 3020:7317 ( +5) (contained) saved region 4727:7312 - closest 5' read 188429 ( +1707) 3020:7317 ( +5) saved region 4727:7312 - closest 3' read 188429 ( +1707) 3020:7317 ( +5) search for confused edges: discard region 4727:7312 - no confusion in best edges Annotating repeats in reads for tig 2840/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7221:8755 - closest 5' read 472331 ( +6332) 889:8752 ( -3) saved region 7221:8755 - closest 3' read 174499 ( -359) 7580:8758 ( +3) search for confused edges: discard region 7221:8755 - no confusion in best edges Annotating repeats in reads for tig 2841/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2844/90584. Annotated with 57 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:11401 - closest read 113417 ( +0) 0:11621 ( +220) (contained) saved region 0:11401 - closest 5' read 113417 ( +0) 0:11621 ( +220) saved region 0:11401 - closest 3' read 113417 ( +0) 0:11621 ( +220) search for confused edges: discard region 0:11401 - no confusion in best edges Annotating repeats in reads for tig 2849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2851/90584. Annotated with 83 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8321:14292 - closest 5' read 411871 ( +2967) 5354:13214 ( -1078) saved region 8321:14292 - closest 3' read 440784 ( -3757) 12078:18604 ( +4312) search for confused edges: tig 2851 read 411871 pos 5354-13214 IS confused by 5' edge to read 212134 - best edge read 440778 len 1125 erate 0.0409 score 1078.99 - alt edge len 1048 erate 0.0372 score 1009.01 - absdiff 69.97 percdiff 6.7024 tig 2851 read 411871 pos 5354-13214 IS confused by 5' edge to read 212135 - best edge read 440778 len 1125 erate 0.0409 score 1078.99 - alt edge len 1115 erate 0.0368 score 1073.97 - absdiff 5.02 percdiff 0.4663 saved region 8321:14292 - 2 best edges are potentially confused break tig 2851 into up to 3 pieces: 0 7821 unique (length 7821) 7821 14792 repeat (length 6971) 14792 18675 unique (length 3883) Creating Unitig 91036 Creating Unitig 91037 Creating Unitig 91038 For tig 2851 unique region 0 7821 - 0/ 24 reads repeat/unique - unitig 91036 created. For tig 2851 repeat region 7821 14792 - 4/ 0 reads repeat/unique - unitig 91037 created. For tig 2851 unique region 14792 18675 - 0/ 3 reads repeat/unique - unitig 91038 created. Annotating repeats in reads for tig 2852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2859/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12122:16570 - closest read 41054 ( +3301) 8821:16587 ( +17) (contained) saved region 12122:16570 - closest 5' read 41054 ( +3301) 8821:16587 ( +17) saved region 12122:16570 - closest 3' read 41054 ( +3301) 8821:16587 ( +17) search for confused edges: discard region 12122:16570 - no confusion in best edges Annotating repeats in reads for tig 2861/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3093:6136 - contained in read 447920 0- 7207 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2863/90584. Annotated with 133 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8614:15095 - closest 5' read 222791 ( +8511) 103:9837 ( -5258) saved region 8614:15095 - closest 3' read 408496 ( -204) 8818:15165 ( +70) saved region 17122:19010 - closest read 66468 ( +0) 17122:19790 ( +780) (contained) saved region 17122:19010 - closest 5' read 66468 ( +0) 17122:19790 ( +780) saved region 17122:19010 - closest 3' read 66468 ( +0) 17122:19790 ( +780) search for confused edges: tig 2863 read 222791 pos 103-9837 IS confused by 5' edge to read 430903 - best edge read 51644 len 1214 erate 0.0248 score 1183.89 - alt edge len 1199 erate 0.0134 score 1182.93 - absdiff 0.96 percdiff 0.0811 tig 2863 read 222791 pos 103-9837 IS confused by 5' edge to read 435728 - best edge read 51644 len 1214 erate 0.0248 score 1183.89 - alt edge len 1209 erate 0.0242 score 1179.74 - absdiff 4.15 percdiff 0.3512 tig 2863 read 222791 pos 103-9837 IS confused by 5' edge to read 448362 - best edge read 51644 len 1214 erate 0.0248 score 1183.89 - alt edge len 1208 erate 0.0192 score 1184.81 - absdiff 0.91 percdiff 0.0771 tig 2863 read 297732 pos 8835-16186 IS confused by 3' edge to read 248344 - best edge read 51644 len 3448 erate 0.0403 score 3309.05 - alt edge len 2794 erate 0.0426 score 2674.98 - absdiff 634.07 percdiff 21.1921 tig 2863 read 186331 pos 10585-18106 IS confused by 3' edge to read 62019 - best edge read 66467 len 980 erate 0.0358 score 944.92 - alt edge len 980 erate 0.0368 score 943.94 - absdiff 0.98 percdiff 0.1038 saved region 8614:15095 - 4 best edges are potentially confused saved region 17122:19010 - 1 best edges are potentially confused break tig 2863 into up to 5 pieces: 0 8114 unique (length 8114) 8114 15595 repeat (length 7481) 15595 16622 unique (length 1027) 16622 19510 repeat (length 2888) 19510 19825 unique (length 315) Creating Unitig 91039 Creating Unitig 91040 Creating Unitig 91041 Creating Unitig 91042 Creating Unitig 91043 For tig 2863 unique region 0 8114 - 0/ 8 reads repeat/unique - unitig 91039 created. For tig 2863 repeat region 8114 15595 - 17/ 0 reads repeat/unique - unitig 91040 created. For tig 2863 unique region 15595 16622 - 0/ 5 reads repeat/unique - unitig 91041 created. For tig 2863 repeat region 16622 19510 - 7/ 0 reads repeat/unique - unitig 91043 created. For tig 2863 unique region 19510 19825 - 0/ 3 reads repeat/unique - unitig 91042 created. Annotating repeats in reads for tig 2869/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9088:10402 - closest read 71633 ( +0) 9088:16214 ( +5812) (contained) saved region 9088:10402 - closest 5' read 71633 ( +0) 9088:16214 ( +5812) saved region 9088:10402 - closest 3' read 71633 ( +0) 9088:16214 ( +5812) search for confused edges: discard region 9088:10402 - no confusion in best edges Annotating repeats in reads for tig 2874/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2879/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 581:2116 - contained in read 463098 0- 6319 discard region 2220:4480 - contained in read 463098 0- 6319 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2883/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2940:10010 - closest 5' read 187458 ( +2800) 140:9606 ( -404) saved region 2940:10010 - closest 3' read 493590 ( -335) 3275:10998 ( +988) search for confused edges: discard region 2940:10010 - no confusion in best edges Annotating repeats in reads for tig 2888/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 6679:7727 - contained in read 468235 2536- 7745 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2889/90584. Annotated with 246 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9989:17609 - closest 5' read 435366 ( +142) 9847:17555 ( -54) saved region 9989:17609 - closest 3' read 172477 ( -52) 10041:17612 ( +3) search for confused edges: tig 2889 read 468535 pos 13432-21070 IS confused by 5' edge to read 441978 - best edge read 422757 len 4117 erate 0.0219 score 4026.84 - alt edge len 2335 erate 0.0167 score 2296.01 - absdiff 1730.83 percdiff 54.7485 tig 2889 read 468535 pos 13432-21070 NOT confused by 5' edge to read 505649 - best edge read 422757 len 4117 erate 0.0219 score 4026.84 - alt edge len 587 erate 0.0341 score 566.98 - absdiff 3459.85 percdiff 150.6308 tig 2889 read 468535 pos 13432-21070 NOT confused by 5' edge to read 505650 - best edge read 422757 len 4117 erate 0.0219 score 4026.84 - alt edge len 611 erate 0.0213 score 597.99 - absdiff 3428.85 percdiff 148.2803 saved region 9989:17609 - 1 best edges are potentially confused break tig 2889 into up to 3 pieces: 0 9489 unique (length 9489) 9489 18109 repeat (length 8620) 18109 21138 unique (length 3029) Creating Unitig 91044 Creating Unitig 91045 Creating Unitig 91046 For tig 2889 unique region 0 9489 - 0/ 11 reads repeat/unique - unitig 91044 created. For tig 2889 repeat region 9489 18109 - 98/ 0 reads repeat/unique - unitig 91045 created. For tig 2889 unique region 18109 21138 - 0/ 8 reads repeat/unique - unitig 91046 created. Annotating repeats in reads for tig 2895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2897/90584. Annotated with 87 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:2534 - closest 5' read 322105 ( +0) 0:2494 ( -40) saved region 0:2534 - closest 3' read 472141 ( -801) 801:4828 ( +2294) search for confused edges: tig 2897 read 322105 pos 0-2494 IS confused by 5' edge to read 32504 - best edge read 472141 len 1677 erate 0.0382 score 1612.94 - alt edge len 1421 erate 0.0331 score 1373.96 - absdiff 238.97 percdiff 16.0014 tig 2897 read 322105 pos 0-2494 IS confused by 5' edge to read 369356 - best edge read 472141 len 1677 erate 0.0382 score 1612.94 - alt edge len 1005 erate 0.0289 score 975.96 - absdiff 636.98 percdiff 49.2089 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 10766 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 1448 erate 0.0346 score 1397.90 - absdiff 230.43 percdiff 15.2287 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 64925 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 1213 erate 0.0283 score 1178.67 - absdiff 449.66 percdiff 32.0381 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 90909 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 677 erate 0.0252 score 659.94 - absdiff 968.39 percdiff 84.6394 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 125421 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 710 erate 0.0325 score 686.93 - absdiff 941.40 percdiff 81.3218 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 125422 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 714 erate 0.0281 score 693.94 - absdiff 934.39 percdiff 80.4724 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 163005 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 1255 erate 0.0348 score 1211.33 - absdiff 417.00 percdiff 29.3699 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 252911 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 1223 erate 0.0238 score 1193.89 - absdiff 434.43 percdiff 30.7867 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 252912 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 1187 erate 0.0228 score 1159.94 - absdiff 468.39 percdiff 33.5973 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 252913 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 1190 erate 0.0324 score 1151.44 - absdiff 476.88 percdiff 34.3110 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 252915 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 1230 erate 0.0212 score 1203.92 - absdiff 424.40 percdiff 29.9693 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 474828 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 1460 erate 0.0226 score 1427.00 - absdiff 201.32 percdiff 13.1785 tig 2897 read 472141 pos 801-4828 IS confused by 5' edge to read 474832 - best edge read 322105 len 1693 erate 0.0382 score 1628.33 - alt edge len 1406 erate 0.0285 score 1365.93 - absdiff 262.40 percdiff 17.5268 saved region 0:2534 - 14 best edges are potentially confused break tig 2897 into up to 2 pieces: 0 3034 repeat (length 3034) 3034 6693 unique (length 3659) Creating Unitig 91047 Creating Unitig 91048 For tig 2897 repeat region 0 3034 - 3/ 0 reads repeat/unique - unitig 91047 created. For tig 2897 unique region 3034 6693 - 0/ 4 reads repeat/unique - unitig 91048 created. Annotating repeats in reads for tig 2902/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2903/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2910/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 8855:12550 - contained in read 338975 5951- 12572 thickest edges to the repeat regions: saved region 5945:8242 - closest 5' read 22000 ( +475) 5470:6625 ( -1617) saved region 5945:8242 - closest 3' read 338978 ( -1) 5946:12267 ( +4025) search for confused edges: discard region 5945:8242 - no confusion in best edges Annotating repeats in reads for tig 2914/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 6376:9212 - contained in read 199087 0- 9942 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2916/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2917/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3885:6332 - contained in read 482888 0- 6332 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2938/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5209:4578 - contained in read 495051 67- 5222 discard region 5211:4589 - contained in read 495051 67- 5222 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2941/90584. Annotated with 518 overlaps. Scan reads to discard spanned repeats. discard region 0:3030 - contained in read 497484 0- 5353 discard region 3008:4511 - contained in read 497484 0- 5353 discard region 4550:8747 - contained in read 524331 2517- 11995 thickest edges to the repeat regions: saved region 11687:17497 - closest 5' read 525169 ( +4541) 7146:13183 ( -4314) saved region 11687:17497 - closest 3' read 343665 ( -1551) 13238:18961 ( +1464) search for confused edges: tig 2941 read 525169 pos 7146-13183 IS confused by 5' edge to read 355140 - best edge read 141331 len 1288 erate 0.0390 score 1237.77 - alt edge len 1085 erate 0.0157 score 1067.97 - absdiff 169.80 percdiff 14.7287 tig 2941 read 141331 pos 11895-15727 IS confused by 5' edge to read 40844 - best edge read 343663 len 2443 erate 0.0177 score 2399.76 - alt edge len 874 erate 0.0161 score 859.93 - absdiff 1539.83 percdiff 94.4772 tig 2941 read 141331 pos 11895-15727 IS confused by 5' edge to read 369766 - best edge read 343663 len 2443 erate 0.0177 score 2399.76 - alt edge len 2027 erate 0.0164 score 1993.76 - absdiff 406.00 percdiff 18.4819 tig 2941 read 141331 pos 11895-15727 IS confused by 5' edge to read 388901 - best edge read 343663 len 2443 erate 0.0177 score 2399.76 - alt edge len 640 erate 0.0094 score 633.98 - absdiff 1765.77 percdiff 116.4090 tig 2941 read 141331 pos 11895-15727 IS confused by 5' edge to read 463179 - best edge read 343663 len 2443 erate 0.0177 score 2399.76 - alt edge len 2513 erate 0.0219 score 2457.97 - absdiff 58.21 percdiff 2.3964 tig 2941 read 141331 pos 11895-15727 IS confused by 5' edge to read 496244 - best edge read 343663 len 2443 erate 0.0177 score 2399.76 - alt edge len 800 erate 0.0368 score 770.56 - absdiff 1629.20 percdiff 102.7782 saved region 11687:17497 - 6 best edges are potentially confused break tig 2941 into up to 3 pieces: 0 11187 unique (length 11187) 11187 17997 repeat (length 6810) 17997 18981 unique (length 984) Creating Unitig 91049 Creating Unitig 91050 Creating Unitig 91051 For tig 2941 unique region 0 11187 - 0/ 30 reads repeat/unique - unitig 91049 created. For tig 2941 repeat region 11187 17997 - 1/ 0 reads repeat/unique - unitig 91050 created. For tig 2941 unique region 17997 18981 - 0/ 4 reads repeat/unique - unitig 91051 created. Annotating repeats in reads for tig 2943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2954/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2956/90584. Annotated with 137 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4586:7121 - closest 5' read 417320 ( +4527) 59:6027 ( -1094) saved region 4586:7121 - closest 3' read 125327 ( -31) 4617:10178 ( +3057) search for confused edges: tig 2956 read 125327 pos 4617-10178 IS confused by 3' edge to read 74480 - best edge read 452249 len 1353 erate 0.0414 score 1296.99 - alt edge len 883 erate 0.0306 score 855.98 - absdiff 441.01 percdiff 40.9673 tig 2956 read 125327 pos 4617-10178 IS confused by 3' edge to read 74481 - best edge read 452249 len 1353 erate 0.0414 score 1296.99 - alt edge len 900 erate 0.0278 score 874.98 - absdiff 422.01 percdiff 38.8593 saved region 4586:7121 - 2 best edges are potentially confused break tig 2956 into up to 3 pieces: 0 4086 unique (length 4086) 4086 7621 repeat (length 3535) 7621 10756 unique (length 3135) Creating Unitig 91052 Creating Unitig 91053 Creating Unitig 91054 For tig 2956 unique region 0 4086 - 0/ 5 reads repeat/unique - unitig 91052 created. For tig 2956 repeat region 4086 7621 - 8/ 0 reads repeat/unique - unitig 91053 created. For tig 2956 unique region 7621 10756 - 0/ 8 reads repeat/unique - unitig 91054 created. Annotating repeats in reads for tig 2958/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 6087:11482 - contained in read 401762 3790- 11482 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2961/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10967:7624 - contained in read 79451 4674- 10944 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2962/90584. Annotated with 84 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 159:4099 - closest read 382296 ( +159) 0:4100 ( +1) (contained) saved region 159:4099 - closest 5' read 382296 ( +159) 0:4100 ( +1) saved region 159:4099 - closest 3' read 382296 ( +159) 0:4100 ( +1) search for confused edges: discard region 159:4099 - no confusion in best edges Annotating repeats in reads for tig 2977/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2978/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 2:634 - contained in read 270574 0- 7304 thickest edges to the repeat regions: saved region 741:7435 - closest 5' read 96535 ( +26) 715:7419 ( -16) saved region 741:7435 - closest 3' read 117562 ( -2521) 3262:7743 ( +308) search for confused edges: discard region 741:7435 - no confusion in best edges Annotating repeats in reads for tig 2991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 2997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3002/90584. Annotated with 131 overlaps. Scan reads to discard spanned repeats. discard region 0:6334 - contained in read 103954 0- 9438 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3011/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3015/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3018/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 877:2975 - contained in read 431904 0- 6426 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3019/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3020/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6029:7203 - closest read 208526 ( +0) 6029:8857 ( +1654) (contained) saved region 6029:7203 - closest 5' read 208526 ( +0) 6029:8857 ( +1654) saved region 6029:7203 - closest 3' read 208526 ( +0) 6029:8857 ( +1654) search for confused edges: tig 3020 read 6909 pos 0-6720 IS confused by 3' edge to read 41287 - best edge read 208523 len 618 erate 0.0278 score 600.82 - alt edge len 502 erate 0.0240 score 489.95 - absdiff 110.87 percdiff 20.3283 tig 3020 read 6909 pos 0-6720 IS confused by 3' edge to read 191994 - best edge read 208523 len 618 erate 0.0278 score 600.82 - alt edge len 506 erate 0.0301 score 490.77 - absdiff 110.05 percdiff 20.1633 tig 3020 read 6909 pos 0-6720 IS confused by 3' edge to read 191995 - best edge read 208523 len 618 erate 0.0278 score 600.82 - alt edge len 520 erate 0.0250 score 507.00 - absdiff 93.82 percdiff 16.9377 tig 3020 read 6909 pos 0-6720 IS confused by 3' edge to read 475123 - best edge read 208523 len 618 erate 0.0278 score 600.82 - alt edge len 590 erate 0.0240 score 575.84 - absdiff 24.98 percdiff 4.2458 saved region 6029:7203 - 4 best edges are potentially confused break tig 3020 into up to 3 pieces: 0 5529 unique (length 5529) 5529 7703 repeat (length 2174) 7703 21025 unique (length 13322) Creating Unitig 91055 Creating Unitig 91056 For tig 3020 unique region 0 5529 - 0/ 4 reads repeat/unique - unitig 91055 created. For tig 3020 repeat region 5529 7703 - 0/ 0 repeat/unique reads - no new unitig created. For tig 3020 unique region 7703 21025 - 0/ 16 reads repeat/unique - unitig 91056 created. Annotating repeats in reads for tig 3022/90584. Annotated with 128 overlaps. Scan reads to discard spanned repeats. discard region 4739:8917 - contained in read 174344 3360- 12363 discard region 11444:16111 - contained in read 212912 8456- 17574 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3024/90584. Annotated with 411 overlaps. Scan reads to discard spanned repeats. discard region 0:3832 - contained in read 461576 0- 5946 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3026/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3028/90584. Annotated with 188 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1882:12060 - closest 5' read 274514 ( +1882) 0:6473 ( -5587) saved region 1882:12060 - closest 3' read 478728 ( -4611) 6493:12753 ( +693) search for confused edges: discard region 1882:12060 - no confusion in best edges Annotating repeats in reads for tig 3029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3031/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3032/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3033/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3037/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 8892:12077 - contained in read 357486 7411- 13326 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3038/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 14259:16906 - contained in read 478715 10662- 16906 thickest edges to the repeat regions: saved region 2406:3191 - closest read 471224 ( +2406) 0:3197 ( +6) (contained) saved region 2406:3191 - closest read 12511 ( +60) 2346:7611 ( +4420) (contained) saved region 2406:3191 - closest read 12512 ( +0) 2406:6287 ( +3096) (contained) saved region 2406:3191 - closest 5' read 12511 ( +60) 2346:7611 ( +4420) saved region 2406:3191 - closest 3' read 471224 ( +2406) 0:3197 ( +6) saved region 5153:7723 - closest 5' read 39882 ( +1858) 3295:7716 ( -7) saved region 5153:7723 - closest 3' read 90171 ( -1608) 6761:11301 ( +3578) saved region 10661:11249 - closest read 90171 ( +3900) 6761:11301 ( +52) (contained) saved region 10661:11249 - closest read 90169 ( +3231) 7430:11256 ( +7) (contained) saved region 10661:11249 - closest read 90170 ( +1626) 9035:11260 ( +11) (contained) saved region 10661:11249 - closest 5' read 90171 ( +3900) 6761:11301 ( +52) saved region 10661:11249 - closest 3' read 90171 ( +3900) 6761:11301 ( +52) search for confused edges: tig 3038 read 12511 pos 2346-7611 IS confused by 3' edge to read 478715 - best edge read 90171 len 850 erate 0.0400 score 816.00 - alt edge len 824 erate 0.0449 score 787.00 - absdiff 29.00 percdiff 3.6179 discard region 2406:3191 - no confusion in best edges saved region 5153:7723 - 1 best edges are potentially confused discard region 10661:11249 - no confusion in best edges break tig 3038 into up to 3 pieces: 0 4653 unique (length 4653) 4653 8223 repeat (length 3570) 8223 16906 unique (length 8683) Creating Unitig 91057 Creating Unitig 91058 For tig 3038 unique region 0 4653 - 0/ 5 reads repeat/unique - unitig 91057 created. For tig 3038 repeat region 4653 8223 - 0/ 0 repeat/unique reads - no new unitig created. For tig 3038 unique region 8223 16906 - 0/ 4 reads repeat/unique - unitig 91058 created. Annotating repeats in reads for tig 3039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3040/90584. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 1576:2223 - contained in read 13273 0- 6535 discard region 2205:3851 - contained in read 13273 0- 6535 discard region 4175:6201 - contained in read 491959 1369- 8279 discard region 6176:7187 - contained in read 491959 1369- 8279 thickest edges to the repeat regions: saved region 7450:8283 - closest read 56567 ( +111) 7339:12536 ( +4253) (contained) saved region 7450:8283 - closest 5' read 56567 ( +111) 7339:12536 ( +4253) saved region 7450:8283 - closest 3' read 56567 ( +111) 7339:12536 ( +4253) search for confused edges: discard region 7450:8283 - no confusion in best edges Annotating repeats in reads for tig 3041/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3043/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3865:2633 - contained in read 14357 0- 6400 thickest edges to the repeat regions: saved region 8749:12034 - closest read 245035 ( +5913) 2836:12145 ( +111) (contained) saved region 8749:12034 - closest read 245034 ( +5862) 2887:12141 ( +107) (contained) saved region 8749:12034 - closest read 245037 ( +5058) 3691:12103 ( +69) (contained) saved region 8749:12034 - closest 5' read 245035 ( +5913) 2836:12145 ( +111) saved region 8749:12034 - closest 3' read 245035 ( +5913) 2836:12145 ( +111) search for confused edges: discard region 8749:12034 - no confusion in best edges Annotating repeats in reads for tig 3045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3046/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2843:271 - contained in read 455042 0- 4972 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3049/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 3146:5943 - contained in read 357662 0- 6782 thickest edges to the repeat regions: saved region 6194:6791 - closest 5' read 357662 ( +6194) 0:6782 ( -9) saved region 6194:6791 - closest 3' read 439069 ( -26) 6220:12571 ( +5780) search for confused edges: discard region 6194:6791 - no confusion in best edges Annotating repeats in reads for tig 3050/90584. Annotated with 87 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1613:10892 - closest 5' read 16731 ( +1613) 0:5746 ( -5146) saved region 1613:10892 - closest 3' read 58150 ( -1155) 2768:11553 ( +661) search for confused edges: tig 3050 read 16731 pos 0-5746 IS confused by 3' edge to read 285907 - best edge read 486748 len 3285 erate 0.0177 score 3226.86 - alt edge len 3196 erate 0.0188 score 3135.92 - absdiff 90.94 percdiff 2.8585 tig 3050 read 322113 pos 4367-11748 NOT confused by 5' edge to read 487555 - best edge read 486748 len 5940 erate 0.0042 score 5915.05 - alt edge len 793 erate 0.0178 score 778.88 - absdiff 5136.17 percdiff 153.4573 tig 3050 read 322113 pos 4367-11748 NOT confused by 5' edge to read 487556 - best edge read 486748 len 5940 erate 0.0042 score 5915.05 - alt edge len 769 erate 0.0195 score 754.00 - absdiff 5161.05 percdiff 154.7759 saved region 1613:10892 - 1 best edges are potentially confused break tig 3050 into up to 3 pieces: 0 1113 unique (length 1113) 1113 11392 repeat (length 10279) 11392 14408 unique (length 3016) Creating Unitig 91059 Creating Unitig 91060 Creating Unitig 91061 For tig 3050 unique region 0 1113 - 0/ 1 reads repeat/unique - unitig 91059 created. For tig 3050 repeat region 1113 11392 - 34/ 0 reads repeat/unique - unitig 91060 created. For tig 3050 unique region 11392 14408 - 0/ 7 reads repeat/unique - unitig 91061 created. Annotating repeats in reads for tig 3051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3053/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3054/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3055/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2748:13896 - closest 5' read 100399 ( +215) 2533:7451 ( -6445) saved region 2748:13896 - closest 3' read 410677 ( -4158) 6906:14561 ( +665) search for confused edges: discard region 2748:13896 - no confusion in best edges Annotating repeats in reads for tig 3056/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3057/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2588:1580 - contained in read 17676 0- 5881 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3058/90584. Annotated with 57 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 36:9165 - closest 5' read 520513 ( +36) 0:7841 ( -1324) saved region 36:9165 - closest 3' read 458838 ( -1442) 1478:13903 ( +4738) search for confused edges: tig 3058 read 520513 pos 0-7841 NOT confused by 3' edge to read 21227 - best edge read 458838 len 6427 erate 0.0241 score 6272.11 - alt edge len 1151 erate 0.0359 score 1109.68 - absdiff 5162.43 percdiff 139.8694 tig 3058 read 520513 pos 0-7841 NOT confused by 3' edge to read 21228 - best edge read 458838 len 6427 erate 0.0241 score 6272.11 - alt edge len 1058 erate 0.0401 score 1015.57 - absdiff 5256.54 percdiff 144.2581 tig 3058 read 520513 pos 0-7841 NOT confused by 3' edge to read 355356 - best edge read 458838 len 6427 erate 0.0241 score 6272.11 - alt edge len 1484 erate 0.0373 score 1428.65 - absdiff 4843.46 percdiff 125.7919 tig 3058 read 520513 pos 0-7841 NOT confused by 3' edge to read 362177 - best edge read 458838 len 6427 erate 0.0241 score 6272.11 - alt edge len 893 erate 0.0410 score 856.39 - absdiff 5415.72 percdiff 151.9457 tig 3058 read 458838 pos 1478-13903 NOT confused by 5' edge to read 119004 - best edge read 520513 len 6363 erate 0.0241 score 6209.65 - alt edge len 1854 erate 0.0211 score 1814.88 - absdiff 4394.77 percdiff 109.5334 tig 3058 read 458838 pos 1478-13903 NOT confused by 5' edge to read 253982 - best edge read 520513 len 6363 erate 0.0241 score 6209.65 - alt edge len 3056 erate 0.0210 score 2991.82 - absdiff 3217.83 percdiff 69.9416 tig 3058 read 458838 pos 1478-13903 NOT confused by 5' edge to read 253983 - best edge read 520513 len 6363 erate 0.0241 score 6209.65 - alt edge len 3057 erate 0.0210 score 2992.80 - absdiff 3216.85 percdiff 69.9128 tig 3058 read 458838 pos 1478-13903 IS confused by 5' edge to read 520512 - best edge read 520513 len 6363 erate 0.0241 score 6209.65 - alt edge len 6355 erate 0.0210 score 6221.55 - absdiff 11.89 percdiff 0.1913 saved region 36:9165 - 1 best edges are potentially confused break tig 3058 into up to 2 pieces: 0 9665 repeat (length 9665) 9665 18985 unique (length 9320) Creating Unitig 91062 Creating Unitig 91063 For tig 3058 repeat region 0 9665 - 5/ 0 reads repeat/unique - unitig 91062 created. For tig 3058 unique region 9665 18985 - 0/ 9 reads repeat/unique - unitig 91063 created. Annotating repeats in reads for tig 3059/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 9845:10402 - contained in read 382452 6827- 12780 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3060/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2758:6888 - closest read 262086 ( +2758) 0:6888 ( +0) (contained) saved region 2758:6888 - closest 5' read 262086 ( +2758) 0:6888 ( +0) saved region 2758:6888 - closest 3' read 262086 ( +2758) 0:6888 ( +0) search for confused edges: discard region 2758:6888 - no confusion in best edges Annotating repeats in reads for tig 3061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3062/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3306:5941 - closest read 437392 ( +3306) 0:6108 ( +167) (contained) saved region 3306:5941 - closest read 437396 ( +1865) 1441:6110 ( +169) (contained) saved region 3306:5941 - closest read 158806 ( +1087) 2219:6331 ( +390) (contained) saved region 3306:5941 - closest read 242601 ( +3) 3303:6126 ( +185) (contained) saved region 3306:5941 - closest 5' read 158806 ( +1087) 2219:6331 ( +390) saved region 3306:5941 - closest 3' read 437392 ( +3306) 0:6108 ( +167) search for confused edges: discard region 3306:5941 - no confusion in best edges Annotating repeats in reads for tig 3063/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3066/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3086:7106 - contained in read 273120 0- 10360 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3071/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5751:11233 - closest 5' read 370722 ( +5392) 359:11219 ( -14) saved region 5751:11233 - closest 3' read 12021 ( -138) 5889:12185 ( +952) search for confused edges: tig 3071 read 370722 pos 359-11219 IS confused by 3' edge to read 129340 - best edge read 12021 len 5330 erate 0.0113 score 5269.77 - alt edge len 3317 erate 0.0222 score 3243.36 - absdiff 2026.41 percdiff 47.6066 tig 3071 read 370722 pos 359-11219 IS confused by 3' edge to read 314575 - best edge read 12021 len 5330 erate 0.0113 score 5269.77 - alt edge len 5330 erate 0.0151 score 5249.52 - absdiff 20.25 percdiff 0.3851 tig 3071 read 12021 pos 5889-12185 NOT confused by 5' edge to read 152177 - best edge read 370722 len 5329 erate 0.0113 score 5268.78 - alt edge len 2607 erate 0.0157 score 2566.07 - absdiff 2702.71 percdiff 68.9920 tig 3071 read 12021 pos 5889-12185 NOT confused by 5' edge to read 365194 - best edge read 370722 len 5329 erate 0.0113 score 5268.78 - alt edge len 2445 erate 0.0409 score 2345.00 - absdiff 2923.78 percdiff 76.8024 tig 3071 read 12021 pos 5889-12185 NOT confused by 5' edge to read 365195 - best edge read 370722 len 5329 erate 0.0113 score 5268.78 - alt edge len 2641 erate 0.0319 score 2556.75 - absdiff 2712.03 percdiff 69.3123 tig 3071 read 12021 pos 5889-12185 IS confused by 5' edge to read 381491 - best edge read 370722 len 5329 erate 0.0113 score 5268.78 - alt edge len 4286 erate 0.0100 score 4243.14 - absdiff 1025.64 percdiff 21.5654 saved region 5751:11233 - 3 best edges are potentially confused break tig 3071 into up to 3 pieces: 0 5251 unique (length 5251) 5251 11733 repeat (length 6482) 11733 18011 unique (length 6278) Creating Unitig 91064 Creating Unitig 91065 Creating Unitig 91066 For tig 3071 unique region 0 5251 - 0/ 7 reads repeat/unique - unitig 91064 created. For tig 3071 repeat region 5251 11733 - 21/ 0 reads repeat/unique - unitig 91065 created. For tig 3071 unique region 11733 18011 - 0/ 5 reads repeat/unique - unitig 91066 created. Annotating repeats in reads for tig 3072/90584. Annotated with 54 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2925:5567 - closest read 504975 ( +2385) 540:5925 ( +358) (contained) saved region 2925:5567 - closest read 529575 ( +302) 2623:5920 ( +353) (contained) saved region 2925:5567 - closest read 347012 ( +300) 2625:5908 ( +341) (contained) saved region 2925:5567 - closest 5' read 504975 ( +2385) 540:5925 ( +358) saved region 2925:5567 - closest 3' read 504975 ( +2385) 540:5925 ( +358) search for confused edges: discard region 2925:5567 - no confusion in best edges Annotating repeats in reads for tig 3074/90584. Annotated with 59 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6623:11141 - closest 5' read 462604 ( +3857) 2766:11125 ( -16) saved region 6623:11141 - closest 3' read 216977 ( -2) 6625:13368 ( +2227) search for confused edges: tig 3074 read 462607 pos 2849-11111 IS confused by 5' edge to read 43217 - best edge read 216977 len 4486 erate 0.0069 score 4455.05 - alt edge len 4345 erate 0.0058 score 4319.80 - absdiff 135.25 percdiff 3.0826 tig 3074 read 462607 pos 2849-11111 NOT confused by 5' edge to read 66230 - best edge read 216977 len 4486 erate 0.0069 score 4455.05 - alt edge len 2308 erate 0.0195 score 2262.99 - absdiff 2192.05 percdiff 65.2587 tig 3074 read 462607 pos 2849-11111 NOT confused by 5' edge to read 66231 - best edge read 216977 len 4486 erate 0.0069 score 4455.05 - alt edge len 2325 erate 0.0143 score 2291.75 - absdiff 2163.29 percdiff 64.1280 tig 3074 read 462607 pos 2849-11111 IS confused by 5' edge to read 66232 - best edge read 216977 len 4486 erate 0.0069 score 4455.05 - alt edge len 2471 erate 0.0215 score 2417.87 - absdiff 2037.17 percdiff 59.2812 tig 3074 read 462607 pos 2849-11111 IS confused by 5' edge to read 111714 - best edge read 216977 len 4486 erate 0.0069 score 4455.05 - alt edge len 3939 erate 0.0071 score 3911.03 - absdiff 544.01 percdiff 13.0052 tig 3074 read 462607 pos 2849-11111 IS confused by 5' edge to read 365471 - best edge read 216977 len 4486 erate 0.0069 score 4455.05 - alt edge len 4484 erate 0.0089 score 4444.09 - absdiff 10.95 percdiff 0.2462 tig 3074 read 462607 pos 2849-11111 IS confused by 5' edge to read 478777 - best edge read 216977 len 4486 erate 0.0069 score 4455.05 - alt edge len 3800 erate 0.0090 score 3765.80 - absdiff 689.25 percdiff 16.7683 saved region 6623:11141 - 5 best edges are potentially confused break tig 3074 into up to 3 pieces: 0 6123 unique (length 6123) 6123 11641 repeat (length 5518) 11641 13374 unique (length 1733) Creating Unitig 91067 Creating Unitig 91068 Creating Unitig 91069 For tig 3074 unique region 0 6123 - 0/ 10 reads repeat/unique - unitig 91067 created. For tig 3074 repeat region 6123 11641 - 6/ 0 reads repeat/unique - unitig 91069 created. For tig 3074 unique region 11641 13374 - 0/ 6 reads repeat/unique - unitig 91068 created. Annotating repeats in reads for tig 3075/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 8929:10105 - contained in read 15107 855- 11696 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3077/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3079/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3080/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3081/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3083/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3086/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1101:2905 - contained in read 25875 0- 3569 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3087/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3088/90584. Annotated with 104 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8408:9795 - closest 5' read 313128 ( +5489) 2919:9246 ( -549) saved region 8408:9795 - closest 3' read 379212 ( -272) 8680:15782 ( +5987) search for confused edges: discard region 8408:9795 - no confusion in best edges Annotating repeats in reads for tig 3089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3092/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3095/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3098/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 4883:5556 - contained in read 155305 0- 6219 discard region 8841:10168 - contained in read 321272 7095- 13618 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3099/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3103/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3105/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3107/90584. Annotated with 739 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5688:13601 - closest 5' read 232850 ( +3762) 1926:12356 ( -1245) saved region 5688:13601 - closest 3' read 457914 ( -2953) 8641:14491 ( +890) search for confused edges: tig 3107 read 30075 pos 1818-11585 IS confused by 5' edge to read 75851 - best edge read 457914 len 2944 erate 0.0258 score 2868.04 - alt edge len 2427 erate 0.0421 score 2324.82 - absdiff 543.22 percdiff 20.9218 tig 3107 read 30075 pos 1818-11585 IS confused by 5' edge to read 104256 - best edge read 457914 len 2944 erate 0.0258 score 2868.04 - alt edge len 1421 erate 0.0430 score 1359.90 - absdiff 1508.15 percdiff 71.3419 tig 3107 read 30075 pos 1818-11585 IS confused by 5' edge to read 144081 - best edge read 457914 len 2944 erate 0.0258 score 2868.04 - alt edge len 874 erate 0.0378 score 840.96 - absdiff 2027.08 percdiff 109.3059 tig 3107 read 30075 pos 1818-11585 IS confused by 5' edge to read 144084 - best edge read 457914 len 2944 erate 0.0258 score 2868.04 - alt edge len 877 erate 0.0410 score 841.04 - absdiff 2027.00 percdiff 109.2992 tig 3107 read 30075 pos 1818-11585 NOT confused by 5' edge to read 311781 - best edge read 457914 len 2944 erate 0.0258 score 2868.04 - alt edge len 562 erate 0.0445 score 536.99 - absdiff 2331.05 percdiff 136.9180 tig 3107 read 30075 pos 1818-11585 IS confused by 5' edge to read 328801 - best edge read 457914 len 2944 erate 0.0258 score 2868.04 - alt edge len 2213 erate 0.0389 score 2126.91 - absdiff 741.13 percdiff 29.6751 tig 3107 read 30075 pos 1818-11585 IS confused by 5' edge to read 356017 - best edge read 457914 len 2944 erate 0.0258 score 2868.04 - alt edge len 2078 erate 0.0332 score 2009.01 - absdiff 859.03 percdiff 35.2276 tig 3107 read 30075 pos 1818-11585 IS confused by 5' edge to read 366011 - best edge read 457914 len 2944 erate 0.0258 score 2868.04 - alt edge len 2732 erate 0.0297 score 2650.86 - absdiff 217.19 percdiff 7.8706 tig 3107 read 30075 pos 1818-11585 IS confused by 5' edge to read 375521 - best edge read 457914 len 2944 erate 0.0258 score 2868.04 - alt edge len 2426 erate 0.0302 score 2352.73 - absdiff 515.31 percdiff 19.7407 tig 3107 read 30075 pos 1818-11585 IS confused by 5' edge to read 428355 - best edge read 457914 len 2944 erate 0.0258 score 2868.04 - alt edge len 2181 erate 0.0440 score 2085.04 - absdiff 783.01 percdiff 31.6170 saved region 5688:13601 - 9 best edges are potentially confused break tig 3107 into up to 3 pieces: 0 5188 unique (length 5188) 5188 14101 repeat (length 8913) 14101 14491 unique (length 390) Creating Unitig 91070 Creating Unitig 91071 Creating Unitig 91072 For tig 3107 unique region 0 5188 - 0/ 14 reads repeat/unique - unitig 91070 created. For tig 3107 repeat region 5188 14101 - 12/ 0 reads repeat/unique - unitig 91071 created. For tig 3107 unique region 14101 14491 - 0/ 5 reads repeat/unique - unitig 91072 created. Annotating repeats in reads for tig 3108/90584. Annotated with 53 overlaps. Scan reads to discard spanned repeats. discard region 9157:11741 - contained in read 303850 7825- 13613 thickest edges to the repeat regions: saved region 5956:8556 - closest 5' read 528214 ( +4) 5952:8551 ( -5) saved region 5956:8556 - closest 3' read 55480 ( -25) 5981:8596 ( +40) search for confused edges: tig 3108 read 55480 pos 5981-8596 IS confused by 3' edge to read 516504 - best edge read 142237 len 798 erate 0.0352 score 769.91 - alt edge len 531 erate 0.0321 score 513.95 - absdiff 255.96 percdiff 39.8726 saved region 5956:8556 - 1 best edges are potentially confused break tig 3108 into up to 3 pieces: 0 5456 unique (length 5456) 5456 9056 repeat (length 3600) 9056 16508 unique (length 7452) Creating Unitig 91073 Creating Unitig 91074 Creating Unitig 91075 For tig 3108 unique region 0 5456 - 0/ 4 reads repeat/unique - unitig 91073 created. For tig 3108 repeat region 5456 9056 - 4/ 0 reads repeat/unique - unitig 91074 created. For tig 3108 unique region 9056 16508 - 0/ 6 reads repeat/unique - unitig 91075 created. Annotating repeats in reads for tig 3109/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4399:5487 - closest read 211136 ( +0) 4399:7730 ( +2243) (contained) saved region 4399:5487 - closest 5' read 211136 ( +0) 4399:7730 ( +2243) saved region 4399:5487 - closest 3' read 211136 ( +0) 4399:7730 ( +2243) search for confused edges: discard region 4399:5487 - no confusion in best edges Annotating repeats in reads for tig 3110/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9965:15134 - closest 5' read 382665 ( +265) 9700:13286 ( -1848) saved region 9965:15134 - closest 3' read 302542 ( -889) 10854:15134 ( +0) search for confused edges: tig 3110 read 302542 pos 10854-15134 IS confused by 5' edge to read 367280 - best edge read 382665 len 2422 erate 0.0289 score 2352.00 - alt edge len 1685 erate 0.0250 score 1642.88 - absdiff 709.13 percdiff 35.5019 saved region 9965:15134 - 1 best edges are potentially confused break tig 3110 into up to 2 pieces: 0 9465 unique (length 9465) 9465 15134 repeat (length 5669) Creating Unitig 91076 Creating Unitig 91077 For tig 3110 unique region 0 9465 - 0/ 11 reads repeat/unique - unitig 91076 created. For tig 3110 repeat region 9465 15134 - 12/ 0 reads repeat/unique - unitig 91077 created. Annotating repeats in reads for tig 3111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3112/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2716:845 - contained in read 529736 0- 5964 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3113/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 924:2765 - contained in read 492686 0- 4351 discard region 3803:4344 - contained in read 37130 1609- 7125 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3115/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 9312:10452 - contained in read 375187 5102- 13614 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3118/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3120/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3123/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6016:8306 - closest read 133701 ( +0) 6016:10362 ( +2056) (contained) saved region 6016:8306 - closest 5' read 133701 ( +0) 6016:10362 ( +2056) saved region 6016:8306 - closest 3' read 133701 ( +0) 6016:10362 ( +2056) search for confused edges: discard region 6016:8306 - no confusion in best edges Annotating repeats in reads for tig 3124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3125/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5130:6593 - contained in read 250667 3779- 7390 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3126/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6399:5431 - contained in read 399640 4303- 10199 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3129/90584. Annotated with 66 overlaps. Scan reads to discard spanned repeats. discard region 6528:8115 - contained in read 414407 1- 10639 discard region 9144:14102 - contained in read 148940 6674- 14479 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3130/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 8914:6894 - contained in read 54297 5090- 11966 thickest edges to the repeat regions: saved region 10944:12912 - closest read 42148 ( +12) 10932:14759 ( +1847) (contained) saved region 10944:12912 - closest read 42149 ( +11) 10933:14789 ( +1877) (contained) saved region 10944:12912 - closest 5' read 42149 ( +11) 10933:14789 ( +1877) saved region 10944:12912 - closest 3' read 42148 ( +12) 10932:14759 ( +1847) search for confused edges: discard region 10944:12912 - no confusion in best edges Annotating repeats in reads for tig 3131/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 12055:14324 - contained in read 42765 9955- 14344 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3133/90584. Annotated with 54 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13217:17661 - closest 5' read 481245 ( +30) 13187:17589 ( -72) saved region 13217:17661 - closest 3' read 116977 ( -3652) 16869:25742 ( +8081) search for confused edges: discard region 13217:17661 - no confusion in best edges Annotating repeats in reads for tig 3135/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6907:7517 - contained in read 44311 5697- 8053 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3137/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1895 - contained in read 42702 0- 3096 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3138/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3139/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3140/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3144/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9045:7838 - contained in read 110839 2091- 8366 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3148/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3150/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7664:11773 - closest read 374726 ( +7) 7657:11777 ( +4) (contained) saved region 7664:11773 - closest 5' read 374726 ( +7) 7657:11777 ( +4) saved region 7664:11773 - closest 3' read 374726 ( +7) 7657:11777 ( +4) search for confused edges: discard region 7664:11773 - no confusion in best edges Annotating repeats in reads for tig 3151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3153/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1498:4701 - contained in read 238445 0- 7326 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3154/90584. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 3165:6695 - contained in read 59155 0- 8061 discard region 13573:15804 - contained in read 518117 10659- 17343 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3155/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3158/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3160/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2290:3333 - contained in read 51909 0- 6444 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3166/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 3174:6218 - contained in read 54555 0- 9292 discard region 6713:12712 - contained in read 430226 5433- 12713 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3167/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3168/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5283:3901 - contained in read 493826 0- 6762 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3174/90584. Annotated with 54 overlaps. Scan reads to discard spanned repeats. discard region 2392:7649 - contained in read 406722 1016- 11058 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3175/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4:1424 - contained in read 27196 0- 5465 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3184/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3186/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3188/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3189/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3190/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3193/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3196/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3197/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 3980:5215 - contained in read 61336 0- 6001 thickest edges to the repeat regions: saved region 6173:10515 - closest 5' read 38099 ( +4134) 2039:6967 ( -3548) saved region 6173:10515 - closest 3' read 473054 ( -417) 6590:10533 ( +18) search for confused edges: tig 3197 read 38101 pos 1200-6958 IS confused by 3' edge to read 262281 - best edge read 396035 len 748 erate 0.0414 score 717.03 - alt edge len 679 erate 0.0339 score 655.98 - absdiff 61.05 percdiff 8.8930 tig 3197 read 396035 pos 6210-10265 IS confused by 5' edge to read 38100 - best edge read 38101 len 750 erate 0.0414 score 718.95 - alt edge len 744 erate 0.0202 score 728.97 - absdiff 10.02 percdiff 1.3842 tig 3197 read 396035 pos 6210-10265 IS confused by 5' edge to read 38104 - best edge read 38101 len 750 erate 0.0414 score 718.95 - alt edge len 747 erate 0.0255 score 727.95 - absdiff 9.00 percdiff 1.2442 tig 3197 read 396035 pos 6210-10265 IS confused by 5' edge to read 162134 - best edge read 38101 len 750 erate 0.0414 score 718.95 - alt edge len 742 erate 0.0148 score 731.02 - absdiff 12.07 percdiff 1.6646 tig 3197 read 396035 pos 6210-10265 IS confused by 5' edge to read 164541 - best edge read 38101 len 750 erate 0.0414 score 718.95 - alt edge len 541 erate 0.0278 score 525.96 - absdiff 192.99 percdiff 31.0046 tig 3197 read 396035 pos 6210-10265 IS confused by 5' edge to read 164542 - best edge read 38101 len 750 erate 0.0414 score 718.95 - alt edge len 545 erate 0.0240 score 531.92 - absdiff 187.03 percdiff 29.9040 tig 3197 read 396035 pos 6210-10265 IS confused by 3' edge to read 262281 - best edge read 348610 len 1063 erate 0.0341 score 1026.75 - alt edge len 659 erate 0.0243 score 642.99 - absdiff 383.77 percdiff 45.9671 tig 3197 read 396035 pos 6210-10265 IS confused by 5' edge to read 263172 - best edge read 38101 len 750 erate 0.0414 score 718.95 - alt edge len 675 erate 0.0238 score 658.93 - absdiff 60.02 percdiff 8.7112 tig 3197 read 396035 pos 6210-10265 IS confused by 5' edge to read 482309 - best edge read 38101 len 750 erate 0.0414 score 718.95 - alt edge len 744 erate 0.0162 score 731.95 - absdiff 13.00 percdiff 1.7916 saved region 6173:10515 - 9 best edges are potentially confused break tig 3197 into up to 3 pieces: 0 5673 unique (length 5673) 5673 11015 repeat (length 5342) 11015 14436 unique (length 3421) Creating Unitig 91078 Creating Unitig 91079 Creating Unitig 91080 For tig 3197 unique region 0 5673 - 0/ 26 reads repeat/unique - unitig 91078 created. For tig 3197 repeat region 5673 11015 - 8/ 0 reads repeat/unique - unitig 91079 created. For tig 3197 unique region 11015 14436 - 0/ 2 reads repeat/unique - unitig 91080 created. Annotating repeats in reads for tig 3199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3201/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 4974:4371 - contained in read 62566 0- 6496 discard region 4994:4372 - contained in read 62566 0- 6496 discard region 5015:4374 - contained in read 62566 0- 6496 discard region 11041:11675 - contained in read 97451 7692- 11675 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3205/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3214/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 3066:4344 - contained in read 65718 0- 8112 thickest edges to the repeat regions: saved region 8446:9681 - closest 5' read 193824 ( +3730) 4716:9679 ( -2) saved region 8446:9681 - closest 3' read 265750 ( -151) 8597:10366 ( +685) search for confused edges: discard region 8446:9681 - no confusion in best edges Annotating repeats in reads for tig 3216/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3217/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3219/90584. Annotated with 102 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 165:4011 - closest 5' read 509314 ( +165) 0:3985 ( -26) saved region 165:4011 - closest 3' read 414307 ( -929) 1094:6923 ( +2912) search for confused edges: tig 3219 read 414307 pos 1094-6923 IS confused by 5' edge to read 3570 - best edge read 509314 len 2891 erate 0.0294 score 2806.00 - alt edge len 928 erate 0.0334 score 897.00 - absdiff 1909.00 percdiff 103.1053 tig 3219 read 414307 pos 1094-6923 IS confused by 5' edge to read 40844 - best edge read 509314 len 2891 erate 0.0294 score 2806.00 - alt edge len 1568 erate 0.0210 score 1535.07 - absdiff 1270.93 percdiff 58.5538 tig 3219 read 414307 pos 1094-6923 IS confused by 5' edge to read 51512 - best edge read 509314 len 2891 erate 0.0294 score 2806.00 - alt edge len 2224 erate 0.0306 score 2155.95 - absdiff 650.06 percdiff 26.2018 tig 3219 read 414307 pos 1094-6923 NOT confused by 5' edge to read 210675 - best edge read 509314 len 2891 erate 0.0294 score 2806.00 - alt edge len 628 erate 0.0318 score 608.03 - absdiff 2197.98 percdiff 128.7612 tig 3219 read 414307 pos 1094-6923 IS confused by 5' edge to read 273456 - best edge read 509314 len 2891 erate 0.0294 score 2806.00 - alt edge len 1918 erate 0.0261 score 1867.94 - absdiff 938.06 percdiff 40.1402 tig 3219 read 414307 pos 1094-6923 IS confused by 5' edge to read 388901 - best edge read 509314 len 2891 erate 0.0294 score 2806.00 - alt edge len 1333 erate 0.0210 score 1305.01 - absdiff 1501.00 percdiff 73.0233 tig 3219 read 414307 pos 1094-6923 IS confused by 5' edge to read 388906 - best edge read 509314 len 2891 erate 0.0294 score 2806.00 - alt edge len 1310 erate 0.0221 score 1281.05 - absdiff 1524.96 percdiff 74.6237 tig 3219 read 414307 pos 1094-6923 IS confused by 5' edge to read 447880 - best edge read 509314 len 2891 erate 0.0294 score 2806.00 - alt edge len 1146 erate 0.0306 score 1110.93 - absdiff 1695.07 percdiff 86.5509 tig 3219 read 414307 pos 1094-6923 IS confused by 5' edge to read 462736 - best edge read 509314 len 2891 erate 0.0294 score 2806.00 - alt edge len 1330 erate 0.0353 score 1283.05 - absdiff 1522.95 percdiff 74.4893 tig 3219 read 414307 pos 1094-6923 IS confused by 5' edge to read 496245 - best edge read 509314 len 2891 erate 0.0294 score 2806.00 - alt edge len 1540 erate 0.0306 score 1492.88 - absdiff 1313.13 percdiff 61.0917 tig 3219 read 414307 pos 1094-6923 IS confused by 5' edge to read 496721 - best edge read 509314 len 2891 erate 0.0294 score 2806.00 - alt edge len 2343 erate 0.0380 score 2253.97 - absdiff 552.04 percdiff 21.8198 saved region 165:4011 - 10 best edges are potentially confused break tig 3219 into up to 2 pieces: 0 4511 repeat (length 4511) 4511 12766 unique (length 8255) Creating Unitig 91081 Creating Unitig 91082 For tig 3219 repeat region 0 4511 - 1/ 0 reads repeat/unique - unitig 91081 created. For tig 3219 unique region 4511 12766 - 0/ 10 reads repeat/unique - unitig 91082 created. Annotating repeats in reads for tig 3221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3222/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 65:5203 - contained in read 294442 0- 6540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3224/90584. Annotated with 54 overlaps. Scan reads to discard spanned repeats. discard region 9516:11334 - contained in read 444706 6139- 16992 discard region 11814:13970 - contained in read 444706 6139- 16992 thickest edges to the repeat regions: saved region 14899:16994 - closest 5' read 444706 ( +8760) 6139:16992 ( -2) saved region 14899:16994 - closest 3' read 188385 ( -12) 14911:19626 ( +2632) search for confused edges: tig 3224 read 444706 pos 6139-16992 IS confused by 5' edge to read 502227 - best edge read 24196 len 1669 erate 0.0348 score 1610.92 - alt edge len 506 erate 0.0298 score 490.92 - absdiff 1120.00 percdiff 106.5731 saved region 14899:16994 - 1 best edges are potentially confused break tig 3224 into up to 3 pieces: 0 14399 unique (length 14399) 14399 17494 repeat (length 3095) 17494 19862 unique (length 2368) Creating Unitig 91083 Creating Unitig 91084 Creating Unitig 91085 For tig 3224 unique region 0 14399 - 0/ 40 reads repeat/unique - unitig 91083 created. For tig 3224 repeat region 14399 17494 - 4/ 0 reads repeat/unique - unitig 91085 created. For tig 3224 unique region 17494 19862 - 0/ 7 reads repeat/unique - unitig 91084 created. Annotating repeats in reads for tig 3225/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3227/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 108:5893 - closest read 79156 ( +25) 83:6732 ( +839) (contained) saved region 108:5893 - closest read 79157 ( +4) 104:6734 ( +841) (contained) saved region 108:5893 - closest 5' read 79157 ( +4) 104:6734 ( +841) saved region 108:5893 - closest 3' read 79156 ( +25) 83:6732 ( +839) search for confused edges: discard region 108:5893 - no confusion in best edges Annotating repeats in reads for tig 3228/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 5560:9583 - contained in read 40414 4377- 10507 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3230/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3232/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 5149:6241 - contained in read 172595 699- 9622 discard region 6729:9622 - contained in read 172595 699- 9622 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3234/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5526:8131 - closest 5' read 85149 ( +1545) 3981:7307 ( -824) saved region 5526:8131 - closest 3' read 106017 ( -3) 5529:8506 ( +375) search for confused edges: tig 3234 read 494135 pos 5531-10511 IS confused by 5' edge to read 41969 - best edge read 243282 len 1748 erate 0.0178 score 1716.89 - alt edge len 2603 erate 0.0058 score 2587.90 - absdiff 871.02 percdiff 40.4674 tig 3234 read 494135 pos 5531-10511 IS confused by 5' edge to read 397731 - best edge read 243282 len 1748 erate 0.0178 score 1716.89 - alt edge len 588 erate 0.0153 score 579.00 - absdiff 1137.88 percdiff 99.1234 saved region 5526:8131 - 2 best edges are potentially confused break tig 3234 into up to 3 pieces: 0 5026 unique (length 5026) 5026 8631 repeat (length 3605) 8631 14801 unique (length 6170) Creating Unitig 91086 Creating Unitig 91087 Creating Unitig 91088 For tig 3234 unique region 0 5026 - 0/ 10 reads repeat/unique - unitig 91086 created. For tig 3234 repeat region 5026 8631 - 2/ 0 reads repeat/unique - unitig 91087 created. For tig 3234 unique region 8631 14801 - 0/ 9 reads repeat/unique - unitig 91088 created. Annotating repeats in reads for tig 3235/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1648:2813 - contained in read 71594 0- 4837 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3237/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 526:5742 - closest read 25093 ( +165) 361:6812 ( +1070) (contained) saved region 526:5742 - closest 5' read 25093 ( +165) 361:6812 ( +1070) saved region 526:5742 - closest 3' read 25093 ( +165) 361:6812 ( +1070) search for confused edges: discard region 526:5742 - no confusion in best edges Annotating repeats in reads for tig 3239/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3240/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 12247:12855 - contained in read 73196 7551- 12855 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3242/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3244/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3245/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3246/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 27:678 - contained in read 208748 0- 5257 discard region 6824:7460 - contained in read 75937 2150- 9666 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3248/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3252/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3253/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 0:2654 - contained in read 226254 0- 7292 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3256/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3257/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 79:2336 - contained in read 215800 0- 5601 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3258/90584. Annotated with 46 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1193:6465 - closest read 60784 ( +351) 842:6465 ( +0) (contained) saved region 1193:6465 - closest 5' read 60784 ( +351) 842:6465 ( +0) saved region 1193:6465 - closest 3' read 60784 ( +351) 842:6465 ( +0) search for confused edges: discard region 1193:6465 - no confusion in best edges Annotating repeats in reads for tig 3262/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3264/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3202:2588 - contained in read 233588 76- 5473 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3265/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3266/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3269/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5306:6534 - contained in read 84358 35- 6534 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3271/90584. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 0:1829 - contained in read 85077 0- 6174 discard region 2063:5703 - contained in read 180483 295- 8155 discard region 10237:11361 - contained in read 489076 5299- 11362 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3272/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2636:7683 - closest read 459576 ( +2448) 188:7687 ( +4) (contained) saved region 2636:7683 - closest 5' read 459576 ( +2448) 188:7687 ( +4) saved region 2636:7683 - closest 3' read 459576 ( +2448) 188:7687 ( +4) search for confused edges: discard region 2636:7683 - no confusion in best edges Annotating repeats in reads for tig 3273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3274/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3278/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3281/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3285/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 10932:14727 - contained in read 90863 9577- 19396 thickest edges to the repeat regions: saved region 9460:10076 - closest 5' read 415098 ( +6489) 2971:10072 ( -4) saved region 9460:10076 - closest 3' read 433731 ( -9) 9469:13448 ( +3372) search for confused edges: discard region 9460:10076 - no confusion in best edges Annotating repeats in reads for tig 3286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3293/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4393:5778 - contained in read 167617 2592- 10958 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3294/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3300/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1750:3547 - contained in read 391123 325- 6694 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3301/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1675:3336 - closest 5' read 147989 ( +1675) 0:3318 ( -18) saved region 1675:3336 - closest 3' read 12597 ( -3) 1678:5130 ( +1794) search for confused edges: tig 3301 read 12597 pos 1678-5130 IS confused by 3' edge to read 269245 - best edge read 147989 len 1640 erate 0.0349 score 1582.76 - alt edge len 694 erate 0.0351 score 669.64 - absdiff 913.12 percdiff 81.0799 saved region 1675:3336 - 1 best edges are potentially confused break tig 3301 into up to 3 pieces: 0 1175 unique (length 1175) 1175 3836 repeat (length 2661) 3836 7242 unique (length 3406) Creating Unitig 91089 Creating Unitig 91090 Creating Unitig 91091 For tig 3301 unique region 0 1175 - 0/ 2 reads repeat/unique - unitig 91089 created. For tig 3301 repeat region 1175 3836 - 5/ 0 reads repeat/unique - unitig 91090 created. For tig 3301 unique region 3836 7242 - 0/ 3 reads repeat/unique - unitig 91091 created. Annotating repeats in reads for tig 3302/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4098:5667 - closest 5' read 162379 ( +4013) 85:5664 ( -3) saved region 4098:5667 - closest 3' read 135374 ( -736) 4834:11483 ( +5816) search for confused edges: discard region 4098:5667 - no confusion in best edges Annotating repeats in reads for tig 3303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3305/90584. Annotated with 109 overlaps. Scan reads to discard spanned repeats. discard region 604:0 - contained in read 99430 0- 6753 thickest edges to the repeat regions: saved region 4271:8352 - closest 5' read 99427 ( +4106) 165:7666 ( -686) saved region 4271:8352 - closest 3' read 378000 ( -15) 4286:8355 ( +3) search for confused edges: tig 3305 read 99428 pos 3-7588 IS confused by 3' edge to read 188556 - best edge read 378000 len 3302 erate 0.0197 score 3236.95 - alt edge len 3250 erate 0.0235 score 3173.62 - absdiff 63.33 percdiff 1.9757 tig 3305 read 99428 pos 3-7588 IS confused by 3' edge to read 225660 - best edge read 378000 len 3302 erate 0.0197 score 3236.95 - alt edge len 2549 erate 0.0216 score 2493.94 - absdiff 743.01 percdiff 25.9300 tig 3305 read 99428 pos 3-7588 IS confused by 3' edge to read 248444 - best edge read 378000 len 3302 erate 0.0197 score 3236.95 - alt edge len 2929 erate 0.0229 score 2861.93 - absdiff 375.02 percdiff 12.2982 tig 3305 read 99428 pos 3-7588 IS confused by 3' edge to read 248445 - best edge read 378000 len 3302 erate 0.0197 score 3236.95 - alt edge len 2925 erate 0.0340 score 2825.55 - absdiff 411.40 percdiff 13.5720 tig 3305 read 99428 pos 3-7588 IS confused by 3' edge to read 361841 - best edge read 378000 len 3302 erate 0.0197 score 3236.95 - alt edge len 2143 erate 0.0252 score 2089.00 - absdiff 1147.95 percdiff 43.1080 tig 3305 read 99428 pos 3-7588 IS confused by 3' edge to read 361844 - best edge read 378000 len 3302 erate 0.0197 score 3236.95 - alt edge len 2144 erate 0.0276 score 2084.83 - absdiff 1152.12 percdiff 43.2985 tig 3305 read 99428 pos 3-7588 IS confused by 3' edge to read 449475 - best edge read 378000 len 3302 erate 0.0197 score 3236.95 - alt edge len 3081 erate 0.0276 score 2995.96 - absdiff 240.99 percdiff 7.7327 tig 3305 read 99428 pos 3-7588 IS confused by 3' edge to read 513274 - best edge read 378000 len 3302 erate 0.0197 score 3236.95 - alt edge len 3022 erate 0.0192 score 2963.98 - absdiff 272.97 percdiff 8.8043 saved region 4271:8352 - 8 best edges are potentially confused break tig 3305 into up to 2 pieces: 0 3771 unique (length 3771) 3771 8355 repeat (length 4584) Creating Unitig 91092 Creating Unitig 91093 For tig 3305 unique region 0 3771 - 0/ 4 reads repeat/unique - unitig 91092 created. For tig 3305 repeat region 3771 8355 - 14/ 0 reads repeat/unique - unitig 91093 created. Annotating repeats in reads for tig 3306/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3307/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 2417:4857 - contained in read 100309 17- 5447 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3308/90584. Annotated with 51 overlaps. Scan reads to discard spanned repeats. discard region 2921:2117 - contained in read 100607 0- 6119 thickest edges to the repeat regions: saved region 4352:7893 - closest 5' read 514855 ( +337) 4015:6439 ( -1454) saved region 4352:7893 - closest 3' read 298895 ( -322) 4674:10182 ( +2289) search for confused edges: tig 3308 read 100607 pos 0-6119 IS confused by 3' edge to read 118134 - best edge read 401616 len 1325 erate 0.0302 score 1284.98 - alt edge len 770 erate 0.0234 score 751.98 - absdiff 533.00 percdiff 52.3330 tig 3308 read 100607 pos 0-6119 IS confused by 3' edge to read 481339 - best edge read 401616 len 1325 erate 0.0302 score 1284.98 - alt edge len 763 erate 0.0342 score 736.91 - absdiff 548.08 percdiff 54.2146 tig 3308 read 100607 pos 0-6119 IS confused by 3' edge to read 481340 - best edge read 401616 len 1325 erate 0.0302 score 1284.98 - alt edge len 776 erate 0.0348 score 749.00 - absdiff 535.99 percdiff 52.7035 tig 3308 read 100607 pos 0-6119 IS confused by 3' edge to read 481342 - best edge read 401616 len 1325 erate 0.0302 score 1284.98 - alt edge len 779 erate 0.0347 score 751.97 - absdiff 533.02 percdiff 52.3347 tig 3308 read 100607 pos 0-6119 IS confused by 3' edge to read 481344 - best edge read 401616 len 1325 erate 0.0302 score 1284.98 - alt edge len 708 erate 0.0325 score 684.99 - absdiff 599.99 percdiff 60.9140 saved region 4352:7893 - 5 best edges are potentially confused break tig 3308 into up to 3 pieces: 0 3852 unique (length 3852) 3852 8393 repeat (length 4541) 8393 10877 unique (length 2484) Creating Unitig 91094 Creating Unitig 91095 Creating Unitig 91096 For tig 3308 unique region 0 3852 - 0/ 6 reads repeat/unique - unitig 91094 created. For tig 3308 repeat region 3852 8393 - 6/ 0 reads repeat/unique - unitig 91095 created. For tig 3308 unique region 8393 10877 - 0/ 4 reads repeat/unique - unitig 91096 created. Annotating repeats in reads for tig 3309/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3311/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3312/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2708:3854 - contained in read 102869 0- 5858 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3313/90584. Annotated with 146 overlaps. Scan reads to discard spanned repeats. discard region 2922:1227 - contained in read 411348 0- 8643 thickest edges to the repeat regions: saved region 4815:13606 - closest 5' read 411348 ( +4815) 0:8643 ( -4963) saved region 4815:13606 - closest 3' read 480686 ( -1440) 6255:15348 ( +1742) search for confused edges: tig 3313 read 411348 pos 0-8643 IS confused by 5' edge to read 368715 - best edge read 480686 len 2358 erate 0.0239 score 2301.64 - alt edge len 2282 erate 0.0300 score 2213.54 - absdiff 88.10 percdiff 3.9026 tig 3313 read 480686 pos 6255-15348 IS confused by 5' edge to read 44765 - best edge read 411348 len 2388 erate 0.0239 score 2330.93 - alt edge len 1114 erate 0.0171 score 1094.95 - absdiff 1235.98 percdiff 72.1553 tig 3313 read 480686 pos 6255-15348 IS confused by 5' edge to read 51439 - best edge read 411348 len 2388 erate 0.0239 score 2330.93 - alt edge len 1689 erate 0.0338 score 1631.91 - absdiff 699.01 percdiff 35.2785 tig 3313 read 480686 pos 6255-15348 IS confused by 5' edge to read 260765 - best edge read 411348 len 2388 erate 0.0239 score 2330.93 - alt edge len 2280 erate 0.0172 score 2240.78 - absdiff 90.14 percdiff 3.9435 tig 3313 read 480686 pos 6255-15348 IS confused by 5' edge to read 333761 - best edge read 411348 len 2388 erate 0.0239 score 2330.93 - alt edge len 1577 erate 0.0318 score 1526.85 - absdiff 804.08 percdiff 41.6859 tig 3313 read 480686 pos 6255-15348 IS confused by 5' edge to read 333762 - best edge read 411348 len 2388 erate 0.0239 score 2330.93 - alt edge len 1575 erate 0.0312 score 1525.86 - absdiff 805.07 percdiff 41.7481 tig 3313 read 480686 pos 6255-15348 IS confused by 5' edge to read 333763 - best edge read 411348 len 2388 erate 0.0239 score 2330.93 - alt edge len 1572 erate 0.0268 score 1529.87 - absdiff 801.06 percdiff 41.4969 saved region 4815:13606 - 7 best edges are potentially confused break tig 3313 into up to 3 pieces: 0 4315 unique (length 4315) 4315 14106 repeat (length 9791) 14106 19080 unique (length 4974) Creating Unitig 91097 Creating Unitig 91098 Creating Unitig 91099 For tig 3313 unique region 0 4315 - 0/ 3 reads repeat/unique - unitig 91097 created. For tig 3313 repeat region 4315 14106 - 6/ 0 reads repeat/unique - unitig 91098 created. For tig 3313 unique region 14106 19080 - 0/ 22 reads repeat/unique - unitig 91099 created. Annotating repeats in reads for tig 3315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3318/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3319/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2196:3320 - contained in read 104907 0- 6702 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3320/90584. Annotated with 107 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3448:7501 - closest 5' read 38885 ( +993) 2455:7474 ( -27) saved region 3448:7501 - closest 3' read 19677 ( -279) 3727:12332 ( +4831) search for confused edges: tig 3320 read 38885 pos 2455-7474 IS confused by 3' edge to read 332945 - best edge read 19677 len 3747 erate 0.0310 score 3630.84 - alt edge len 3724 erate 0.0378 score 3583.23 - absdiff 47.61 percdiff 1.3199 tig 3320 read 19677 pos 3727-12332 IS confused by 3' edge to read 239573 - best edge read 38885 len 3705 erate 0.0310 score 3590.14 - alt edge len 3497 erate 0.0217 score 3421.12 - absdiff 169.03 percdiff 4.8217 saved region 3448:7501 - 2 best edges are potentially confused break tig 3320 into up to 3 pieces: 0 2948 unique (length 2948) 2948 8001 repeat (length 5053) 8001 12377 unique (length 4376) Creating Unitig 91100 Creating Unitig 91101 For tig 3320 unique region 0 2948 - 0/ 9 reads repeat/unique - unitig 91100 created. For tig 3320 repeat region 2948 8001 - 0/ 0 repeat/unique reads - no new unitig created. For tig 3320 unique region 8001 12377 - 0/ 8 reads repeat/unique - unitig 91101 created. Annotating repeats in reads for tig 3321/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1576:2555 - contained in read 508622 0- 4938 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3322/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3323/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3325/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3327/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7405:8437 - contained in read 192528 1888- 11305 discard region 9467:9976 - contained in read 192528 1888- 11305 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3329/90584. Annotated with 472 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:3993 - closest 5' read 141326 ( +0) 0:3842 ( -151) saved region 0:3993 - closest 3' read 179101 ( -2641) 2641:9300 ( +5307) search for confused edges: tig 3329 read 179101 pos 2641-9300 IS confused by 5' edge to read 133549 - best edge read 141326 len 1201 erate 0.0376 score 1155.84 - alt edge len 508 erate 0.0198 score 497.94 - absdiff 657.90 percdiff 79.5631 tig 3329 read 179101 pos 2641-9300 IS confused by 5' edge to read 501517 - best edge read 141326 len 1201 erate 0.0376 score 1155.84 - alt edge len 975 erate 0.0268 score 948.87 - absdiff 206.97 percdiff 19.6675 saved region 0:3993 - 2 best edges are potentially confused break tig 3329 into up to 2 pieces: 0 4493 repeat (length 4493) 4493 13049 unique (length 8556) Creating Unitig 91102 Creating Unitig 91103 For tig 3329 repeat region 0 4493 - 4/ 0 reads repeat/unique - unitig 91102 created. For tig 3329 unique region 4493 13049 - 0/ 11 reads repeat/unique - unitig 91103 created. Annotating repeats in reads for tig 3330/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 3571:4830 - contained in read 108328 0- 5673 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3331/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 18027:20804 - contained in read 381530 16845- 21888 thickest edges to the repeat regions: saved region 8579:16433 - closest read 133516 ( +0) 8579:17354 ( +921) (contained) saved region 8579:16433 - closest 5' read 133516 ( +0) 8579:17354 ( +921) saved region 8579:16433 - closest 3' read 133516 ( +0) 8579:17354 ( +921) search for confused edges: discard region 8579:16433 - no confusion in best edges Annotating repeats in reads for tig 3332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3335/90584. Annotated with 229 overlaps. Scan reads to discard spanned repeats. discard region 7428:10255 - contained in read 277320 4335- 11763 discard region 11184:14216 - contained in read 296479 8050- 16066 thickest edges to the repeat regions: saved region 3984:6827 - closest 5' read 340936 ( +711) 3273:5901 ( -926) saved region 3984:6827 - closest 3' read 452116 ( -27) 4011:6939 ( +112) search for confused edges: discard region 3984:6827 - no confusion in best edges Annotating repeats in reads for tig 3336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3337/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3:2495 - contained in read 222059 0- 6162 discard region 3250:2740 - contained in read 222059 0- 6162 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3342/90584. Annotated with 104 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 832:8144 - closest read 410201 ( +34) 798:8144 ( +0) (contained) saved region 832:8144 - closest 5' read 410201 ( +34) 798:8144 ( +0) saved region 832:8144 - closest 3' read 410201 ( +34) 798:8144 ( +0) search for confused edges: discard region 832:8144 - no confusion in best edges Annotating repeats in reads for tig 3343/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6703:8385 - closest read 351808 ( +3226) 3477:8386 ( +1) (contained) saved region 6703:8385 - closest 5' read 351808 ( +3226) 3477:8386 ( +1) saved region 6703:8385 - closest 3' read 351808 ( +3226) 3477:8386 ( +1) search for confused edges: discard region 6703:8385 - no confusion in best edges Annotating repeats in reads for tig 3344/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2332:4160 - closest read 226964 ( +288) 2044:4178 ( +18) (contained) saved region 2332:4160 - closest read 464872 ( +0) 2332:7307 ( +3147) (contained) saved region 2332:4160 - closest 5' read 464872 ( +0) 2332:7307 ( +3147) saved region 2332:4160 - closest 3' read 226964 ( +288) 2044:4178 ( +18) search for confused edges: discard region 2332:4160 - no confusion in best edges Annotating repeats in reads for tig 3345/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8876:11332 - contained in read 148013 3771- 12160 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3347/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3351/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 2170:6279 - contained in read 359196 0- 6962 discard region 6937:10706 - contained in read 115743 4642- 12571 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3355/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3284:27 - contained in read 347048 0- 11248 discard region 4657:5718 - contained in read 347048 0- 11248 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3358/90584. Annotated with 646 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2261:7828 - closest 5' read 383583 ( +669) 1592:6830 ( -998) saved region 2261:7828 - closest 3' read 31871 ( -18) 2279:8859 ( +1031) search for confused edges: tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 15260 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3637 erate 0.0286 score 3532.98 - absdiff 894.78 percdiff 22.4798 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 19297 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 2655 erate 0.0247 score 2589.42 - absdiff 1838.34 percdiff 52.3954 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 25365 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 909 erate 0.0286 score 883.00 - absdiff 3544.76 percdiff 133.4934 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 25366 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 551 erate 0.0381 score 530.01 - absdiff 3897.76 percdiff 157.2383 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 36821 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3617 erate 0.0224 score 3535.98 - absdiff 891.78 percdiff 22.3961 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 43611 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 1976 erate 0.0147 score 1946.95 - absdiff 2480.81 percdiff 77.8328 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 51583 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 4149 erate 0.0306 score 4022.04 - absdiff 405.72 percdiff 9.6031 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 56231 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 710 erate 0.0211 score 695.02 - absdiff 3732.74 percdiff 145.7311 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 120433 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 2781 erate 0.0302 score 2697.01 - absdiff 1730.75 percdiff 48.5839 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 120434 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 2855 erate 0.0302 score 2768.78 - absdiff 1658.98 percdiff 46.1050 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 121025 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 4291 erate 0.0223 score 4195.31 - absdiff 232.45 percdiff 5.3914 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 184649 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3334 erate 0.0198 score 3267.99 - absdiff 1159.78 percdiff 30.1407 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 193774 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3117 erate 0.0248 score 3039.70 - absdiff 1388.06 percdiff 37.1763 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 197204 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 1947 erate 0.0330 score 1882.75 - absdiff 2545.01 percdiff 80.6595 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 200277 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3382 erate 0.0222 score 3306.92 - absdiff 1120.84 percdiff 28.9823 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 200278 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3501 erate 0.0174 score 3440.08 - absdiff 987.68 percdiff 25.1067 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 225280 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3331 erate 0.0258 score 3245.06 - absdiff 1182.70 percdiff 30.8283 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 225281 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3179 erate 0.0266 score 3094.44 - absdiff 1333.32 percdiff 35.4504 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 238832 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3072 erate 0.0322 score 2973.08 - absdiff 1454.68 percdiff 39.3112 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 264038 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 1959 erate 0.0214 score 1917.08 - absdiff 2510.69 percdiff 79.1410 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 289935 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3615 erate 0.0163 score 3556.08 - absdiff 871.69 percdiff 21.8363 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 345008 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3701 erate 0.0216 score 3621.06 - absdiff 806.70 percdiff 20.0453 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 366916 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 2333 erate 0.0236 score 2277.94 - absdiff 2149.82 percdiff 64.1192 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 376636 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 774 erate 0.0194 score 758.98 - absdiff 3668.78 percdiff 141.4674 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 400747 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 2119 erate 0.0180 score 2080.86 - absdiff 2346.90 percdiff 72.1168 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 400749 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 2124 erate 0.0165 score 2088.95 - absdiff 2338.81 percdiff 71.7787 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 400750 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 2097 erate 0.0226 score 2049.61 - absdiff 2378.15 percdiff 73.4296 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 405295 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 830 erate 0.0313 score 804.02 - absdiff 3623.74 percdiff 138.5280 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 416999 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 1378 erate 0.0302 score 1336.38 - absdiff 3091.38 percdiff 107.2623 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 433343 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 1810 erate 0.0276 score 1760.04 - absdiff 2667.72 percdiff 86.2250 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 433344 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 1814 erate 0.0265 score 1765.93 - absdiff 2661.83 percdiff 85.9531 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 435911 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 1867 erate 0.0289 score 1813.04 - absdiff 2614.72 percdiff 83.7943 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 436471 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 1136 erate 0.0238 score 1108.96 - absdiff 3318.80 percdiff 119.8831 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 440902 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 1411 erate 0.0338 score 1363.31 - absdiff 3064.45 percdiff 105.8338 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 443010 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 3105 erate 0.0093 score 3076.12 - absdiff 1351.64 percdiff 36.0250 tig 3358 read 383583 pos 1592-6830 IS confused by 5' edge to read 445536 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 2944 erate 0.0185 score 2889.54 - absdiff 1538.23 percdiff 42.0436 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 459664 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 1494 erate 0.0276 score 1452.77 - absdiff 2975.00 percdiff 101.1813 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 480886 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 806 erate 0.0360 score 776.98 - absdiff 3650.78 percdiff 140.2865 tig 3358 read 383583 pos 1592-6830 NOT confused by 5' edge to read 506094 - best edge read 31870 len 4568 erate 0.0307 score 4427.76 - alt edge len 1952 erate 0.0174 score 1918.04 - absdiff 2509.73 percdiff 79.0989 saved region 2261:7828 - 18 best edges are potentially confused break tig 3358 into up to 3 pieces: 0 1761 unique (length 1761) 1761 8328 repeat (length 6567) 8328 8859 unique (length 531) Creating Unitig 91104 Creating Unitig 91105 Creating Unitig 91106 For tig 3358 unique region 0 1761 - 0/ 4 reads repeat/unique - unitig 91104 created. For tig 3358 repeat region 1761 8328 - 62/ 0 reads repeat/unique - unitig 91105 created. For tig 3358 unique region 8328 8859 - 0/ 1 reads repeat/unique - unitig 91106 created. Annotating repeats in reads for tig 3359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3362/90584. Annotated with 541 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5114:8470 - closest read 82294 ( +1873) 3241:8521 ( +51) (contained) saved region 5114:8470 - closest 5' read 82294 ( +1873) 3241:8521 ( +51) saved region 5114:8470 - closest 3' read 82294 ( +1873) 3241:8521 ( +51) search for confused edges: discard region 5114:8470 - no confusion in best edges Annotating repeats in reads for tig 3363/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3364/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6924:8871 - closest read 358307 ( +846) 6078:8879 ( +8) (contained) saved region 6924:8871 - closest 5' read 358307 ( +846) 6078:8879 ( +8) saved region 6924:8871 - closest 3' read 358307 ( +846) 6078:8879 ( +8) search for confused edges: tig 3364 read 279030 pos 6931-10246 IS confused by 5' edge to read 432676 - best edge read 175782 len 1928 erate 0.0369 score 1856.86 - alt edge len 636 erate 0.0394 score 610.94 - absdiff 1245.92 percdiff 100.9738 saved region 6924:8871 - 1 best edges are potentially confused break tig 3364 into up to 3 pieces: 0 6424 unique (length 6424) 6424 9371 repeat (length 2947) 9371 13836 unique (length 4465) Creating Unitig 91107 Creating Unitig 91108 Creating Unitig 91109 For tig 3364 unique region 0 6424 - 0/ 10 reads repeat/unique - unitig 91107 created. For tig 3364 repeat region 6424 9371 - 20/ 0 reads repeat/unique - unitig 91108 created. For tig 3364 unique region 9371 13836 - 0/ 3 reads repeat/unique - unitig 91109 created. Annotating repeats in reads for tig 3367/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3368/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3369/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3376/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3379/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3383/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 104:672 - contained in read 126076 0- 7529 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3385/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3388/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3390/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2757:6520 - closest read 117450 ( +984) 1773:6975 ( +455) (contained) saved region 2757:6520 - closest 5' read 117450 ( +984) 1773:6975 ( +455) saved region 2757:6520 - closest 3' read 117450 ( +984) 1773:6975 ( +455) search for confused edges: discard region 2757:6520 - no confusion in best edges Annotating repeats in reads for tig 3391/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3393/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3396/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9247:9894 - contained in read 49800 3990- 9910 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3401/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 18201:19814 - contained in read 158213 15128- 21787 discard region 19933:22548 - contained in read 135829 16644- 24043 thickest edges to the repeat regions: saved region 5925:11706 - closest 5' read 31253 ( +5878) 47:8186 ( -3520) saved region 5925:11706 - closest 3' read 105543 ( -130) 6055:13903 ( +2197) saved region 14111:16736 - closest read 385396 ( +6949) 7162:16736 ( +0) (contained) saved region 14111:16736 - closest 5' read 385396 ( +6949) 7162:16736 ( +0) saved region 14111:16736 - closest 3' read 385396 ( +6949) 7162:16736 ( +0) search for confused edges: tig 3401 read 158213 pos 15128-21787 IS confused by 3' edge to read 31252 - best edge read 385399 len 1601 erate 0.0431 score 1532.00 - alt edge len 1298 erate 0.0247 score 1265.94 - absdiff 266.06 percdiff 19.0181 tig 3401 read 158213 pos 15128-21787 IS confused by 3' edge to read 31253 - best edge read 385399 len 1601 erate 0.0431 score 1532.00 - alt edge len 1307 erate 0.0245 score 1274.98 - absdiff 257.02 percdiff 18.3128 tig 3401 read 158213 pos 15128-21787 IS confused by 3' edge to read 31254 - best edge read 385399 len 1601 erate 0.0431 score 1532.00 - alt edge len 1290 erate 0.0233 score 1259.94 - absdiff 272.05 percdiff 19.4885 discard region 5925:11706 - no confusion in best edges saved region 14111:16736 - 3 best edges are potentially confused break tig 3401 into up to 3 pieces: 0 13611 unique (length 13611) 13611 17236 repeat (length 3625) 17236 24043 unique (length 6807) Creating Unitig 91110 Creating Unitig 91111 For tig 3401 unique region 0 13611 - 0/ 20 reads repeat/unique - unitig 91110 created. For tig 3401 repeat region 13611 17236 - 0/ 0 repeat/unique reads - no new unitig created. For tig 3401 unique region 17236 24043 - 0/ 4 reads repeat/unique - unitig 91111 created. Annotating repeats in reads for tig 3402/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 468:3842 - contained in read 386963 0- 6213 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3405/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6687:7740 - closest 5' read 206040 ( +0) 6687:7720 ( -20) saved region 6687:7740 - closest 3' read 419877 ( -2) 6689:15987 ( +8247) search for confused edges: tig 3405 read 419877 pos 6689-15987 IS confused by 5' edge to read 209350 - best edge read 22633 len 969 erate 0.0300 score 939.93 - alt edge len 864 erate 0.0347 score 834.02 - absdiff 105.91 percdiff 11.9407 tig 3405 read 419877 pos 6689-15987 IS confused by 5' edge to read 451835 - best edge read 22633 len 969 erate 0.0300 score 939.93 - alt edge len 679 erate 0.0309 score 658.02 - absdiff 281.91 percdiff 35.2841 tig 3405 read 419877 pos 6689-15987 IS confused by 5' edge to read 451836 - best edge read 22633 len 969 erate 0.0300 score 939.93 - alt edge len 706 erate 0.0269 score 687.01 - absdiff 252.92 percdiff 31.0917 tig 3405 read 419877 pos 6689-15987 IS confused by 5' edge to read 451837 - best edge read 22633 len 969 erate 0.0300 score 939.93 - alt edge len 596 erate 0.0403 score 571.98 - absdiff 367.95 percdiff 48.6733 tig 3405 read 419877 pos 6689-15987 IS confused by 5' edge to read 451838 - best edge read 22633 len 969 erate 0.0300 score 939.93 - alt edge len 698 erate 0.0258 score 679.99 - absdiff 259.94 percdiff 32.0927 saved region 6687:7740 - 5 best edges are potentially confused break tig 3405 into up to 3 pieces: 0 6187 unique (length 6187) 6187 8240 repeat (length 2053) 8240 16004 unique (length 7764) Creating Unitig 91112 Creating Unitig 91113 Creating Unitig 91114 For tig 3405 unique region 0 6187 - 0/ 10 reads repeat/unique - unitig 91112 created. For tig 3405 repeat region 6187 8240 - 2/ 0 reads repeat/unique - unitig 91113 created. For tig 3405 unique region 8240 16004 - 0/ 2 reads repeat/unique - unitig 91114 created. Annotating repeats in reads for tig 3406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3407/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3409/90584. Annotated with 66 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 328:6061 - closest read 238203 ( +283) 45:6061 ( +0) (contained) saved region 328:6061 - closest 5' read 238203 ( +283) 45:6061 ( +0) saved region 328:6061 - closest 3' read 238203 ( +283) 45:6061 ( +0) search for confused edges: discard region 328:6061 - no confusion in best edges Annotating repeats in reads for tig 3411/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 4691:7468 - contained in read 417896 3862- 12334 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3413/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3414/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2583:3088 - contained in read 280272 0- 6416 thickest edges to the repeat regions: saved region 5448:7055 - closest read 348008 ( +2881) 2567:7161 ( +106) (contained) saved region 5448:7055 - closest read 93200 ( +2820) 2628:7266 ( +211) (contained) saved region 5448:7055 - closest read 93199 ( +2820) 2628:7261 ( +206) (contained) saved region 5448:7055 - closest 5' read 93200 ( +2820) 2628:7266 ( +211) saved region 5448:7055 - closest 3' read 348008 ( +2881) 2567:7161 ( +106) search for confused edges: discard region 5448:7055 - no confusion in best edges Annotating repeats in reads for tig 3417/90584. Annotated with 41 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3050:7652 - closest read 12232 ( +67) 2983:7656 ( +4) (contained) saved region 3050:7652 - closest 5' read 12232 ( +67) 2983:7656 ( +4) saved region 3050:7652 - closest 3' read 12232 ( +67) 2983:7656 ( +4) search for confused edges: discard region 3050:7652 - no confusion in best edges Annotating repeats in reads for tig 3418/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5215:5726 - contained in read 15565 591- 6614 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3419/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3421/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3422/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3426/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 4144:2734 - contained in read 145966 0- 8100 discard region 4390:5352 - contained in read 145966 0- 8100 discard region 5915:6600 - contained in read 145966 0- 8100 discard region 6749:13527 - contained in read 50143 2773- 13579 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3427/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4375:5762 - contained in read 422227 2036- 6462 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3433/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 4893:5899 - contained in read 323429 1016- 6615 discard region 5950:7434 - contained in read 148271 2644- 8073 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3434/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 1276:4232 - contained in read 148722 0- 7981 discard region 9926:11389 - contained in read 146813 7928- 14188 thickest edges to the repeat regions: saved region 6445:7988 - closest 5' read 148722 ( +6445) 0:7981 ( -7) saved region 6445:7988 - closest 3' read 518021 ( -19) 6464:11030 ( +3042) search for confused edges: discard region 6445:7988 - no confusion in best edges Annotating repeats in reads for tig 3436/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4761:5418 - contained in read 437334 0- 10900 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3438/90584. Annotated with 65 overlaps. Scan reads to discard spanned repeats. discard region 2165:4110 - contained in read 352910 0- 7763 discard region 8390:13667 - contained in read 150962 4292- 13879 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3441/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3443/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3445/90584. Annotated with 59 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 15123:17843 - closest 5' read 205121 ( +7726) 7397:17747 ( -96) saved region 15123:17843 - closest 3' read 153438 ( -27) 15150:21233 ( +3390) search for confused edges: tig 3445 read 153438 pos 15150-21233 IS confused by 5' edge to read 197878 - best edge read 205121 len 2597 erate 0.0405 score 2491.82 - alt edge len 2681 erate 0.0403 score 2572.96 - absdiff 81.13 percdiff 3.2039 tig 3445 read 153438 pos 15150-21233 IS confused by 5' edge to read 531729 - best edge read 205121 len 2597 erate 0.0405 score 2491.82 - alt edge len 2380 erate 0.0430 score 2277.66 - absdiff 214.16 percdiff 8.9805 tig 3445 read 153438 pos 15150-21233 IS confused by 5' edge to read 531730 - best edge read 205121 len 2597 erate 0.0405 score 2491.82 - alt edge len 2393 erate 0.0406 score 2295.84 - absdiff 195.98 percdiff 8.1868 saved region 15123:17843 - 3 best edges are potentially confused break tig 3445 into up to 3 pieces: 0 14623 unique (length 14623) 14623 18343 repeat (length 3720) 18343 21293 unique (length 2950) Creating Unitig 91115 Creating Unitig 91116 Creating Unitig 91117 For tig 3445 unique region 0 14623 - 0/ 18 reads repeat/unique - unitig 91115 created. For tig 3445 repeat region 14623 18343 - 2/ 0 reads repeat/unique - unitig 91117 created. For tig 3445 unique region 18343 21293 - 0/ 4 reads repeat/unique - unitig 91116 created. Annotating repeats in reads for tig 3447/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 8443:10249 - contained in read 441539 163- 10249 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3448/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10608:11896 - closest read 307464 ( +177) 10431:13923 ( +2027) (contained) saved region 10608:11896 - closest read 307461 ( +167) 10441:12957 ( +1061) (contained) saved region 10608:11896 - closest 5' read 307464 ( +177) 10431:13923 ( +2027) saved region 10608:11896 - closest 3' read 307464 ( +177) 10431:13923 ( +2027) search for confused edges: discard region 10608:11896 - no confusion in best edges Annotating repeats in reads for tig 3449/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2759:5141 - closest 5' read 358029 ( +2759) 0:5137 ( -4) saved region 2759:5141 - closest 3' read 155967 ( -792) 3551:9198 ( +4057) search for confused edges: tig 3449 read 155967 pos 3551-9198 IS confused by 5' edge to read 307339 - best edge read 358029 len 1586 erate 0.0192 score 1555.55 - alt edge len 1556 erate 0.0175 score 1528.77 - absdiff 26.78 percdiff 1.7364 saved region 2759:5141 - 1 best edges are potentially confused break tig 3449 into up to 3 pieces: 0 2259 unique (length 2259) 2259 5641 repeat (length 3382) 5641 9246 unique (length 3605) Creating Unitig 91118 Creating Unitig 91119 For tig 3449 unique region 0 2259 - 0/ 1 reads repeat/unique - unitig 91118 created. For tig 3449 repeat region 2259 5641 - 0/ 0 repeat/unique reads - no new unitig created. For tig 3449 unique region 5641 9246 - 0/ 2 reads repeat/unique - unitig 91119 created. Annotating repeats in reads for tig 3450/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3451/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3457/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3460/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3465/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3474/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 10440:11910 - contained in read 418882 6346- 15513 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3475/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3480/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3485/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3489/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3490/90584. Annotated with 83 overlaps. Scan reads to discard spanned repeats. discard region 7361:6564 - contained in read 174410 99- 9782 thickest edges to the repeat regions: saved region 11523:16441 - closest 5' read 189212 ( +2383) 9140:13513 ( -2928) saved region 11523:16441 - closest 3' read 348072 ( -92) 11615:17383 ( +942) search for confused edges: tig 3490 read 189212 pos 9140-13513 IS confused by 3' edge to read 522915 - best edge read 348072 len 1898 erate 0.0338 score 1833.85 - alt edge len 1534 erate 0.0326 score 1483.99 - absdiff 349.86 percdiff 21.0894 tig 3490 read 189212 pos 9140-13513 IS confused by 3' edge to read 522916 - best edge read 348072 len 1898 erate 0.0338 score 1833.85 - alt edge len 1573 erate 0.0350 score 1517.94 - absdiff 315.90 percdiff 18.8498 saved region 11523:16441 - 2 best edges are potentially confused break tig 3490 into up to 3 pieces: 0 11023 unique (length 11023) 11023 16941 repeat (length 5918) 16941 17383 unique (length 442) Creating Unitig 91120 Creating Unitig 91121 Creating Unitig 91122 For tig 3490 unique region 0 11023 - 0/ 13 reads repeat/unique - unitig 91120 created. For tig 3490 repeat region 11023 16941 - 1/ 0 reads repeat/unique - unitig 91121 created. For tig 3490 unique region 16941 17383 - 0/ 1 reads repeat/unique - unitig 91122 created. Annotating repeats in reads for tig 3491/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3494/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3500/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3501/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1938:2615 - closest read 184767 ( +380) 1558:2619 ( +4) (contained) saved region 1938:2615 - closest 5' read 184767 ( +380) 1558:2619 ( +4) saved region 1938:2615 - closest 3' read 184767 ( +380) 1558:2619 ( +4) search for confused edges: discard region 1938:2615 - no confusion in best edges Annotating repeats in reads for tig 3502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3509/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 4444:6774 - contained in read 395244 3045- 10632 thickest edges to the repeat regions: saved region 7221:10741 - closest read 19261 ( +0) 7221:11916 ( +1175) (contained) saved region 7221:10741 - closest 5' read 19261 ( +0) 7221:11916 ( +1175) saved region 7221:10741 - closest 3' read 19261 ( +0) 7221:11916 ( +1175) search for confused edges: discard region 7221:10741 - no confusion in best edges Annotating repeats in reads for tig 3511/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7369:5028 - contained in read 460963 0- 5626 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3516/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3517/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3521/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 17300:16686 - contained in read 464097 6379- 17878 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3525/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3526/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3814:2809 - contained in read 239923 1121- 4909 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3530/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3532/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3534/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3535/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3537/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:3033 - contained in read 237601 0- 4292 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3538/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3541/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7935:7226 - contained in read 194196 0- 8043 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3542/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3544/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5917:12564 - closest 5' read 30652 ( +3907) 2010:10218 ( -2346) saved region 5917:12564 - closest 3' read 135690 ( -4) 5921:13599 ( +1035) search for confused edges: tig 3544 read 489921 pos 1993-10129 IS confused by 3' edge to read 29660 - best edge read 419401 len 4204 erate 0.0357 score 4053.92 - alt edge len 2995 erate 0.0347 score 2891.07 - absdiff 1162.84 percdiff 33.4873 tig 3544 read 489921 pos 1993-10129 IS confused by 3' edge to read 29662 - best edge read 419401 len 4204 erate 0.0357 score 4053.92 - alt edge len 2947 erate 0.0305 score 2857.12 - absdiff 1196.80 percdiff 34.6345 tig 3544 read 419401 pos 5925-14930 IS confused by 5' edge to read 462308 - best edge read 489921 len 4253 erate 0.0357 score 4101.17 - alt edge len 3990 erate 0.0161 score 3925.76 - absdiff 175.41 percdiff 4.3705 saved region 5917:12564 - 3 best edges are potentially confused break tig 3544 into up to 3 pieces: 0 5417 unique (length 5417) 5417 13064 repeat (length 7647) 13064 21199 unique (length 8135) Creating Unitig 91123 Creating Unitig 91124 Creating Unitig 91125 For tig 3544 unique region 0 5417 - 0/ 6 reads repeat/unique - unitig 91123 created. For tig 3544 repeat region 5417 13064 - 13/ 0 reads repeat/unique - unitig 91124 created. For tig 3544 unique region 13064 21199 - 0/ 14 reads repeat/unique - unitig 91125 created. Annotating repeats in reads for tig 3545/90584. Annotated with 56 overlaps. Scan reads to discard spanned repeats. discard region 0:8206 - contained in read 195442 0- 8964 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3546/90584. Annotated with 65 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4994:16875 - closest 5' read 119497 ( +3416) 1578:11630 ( -5245) saved region 4994:16875 - closest 3' read 373245 ( -5325) 10319:16895 ( +20) search for confused edges: tig 3546 read 119497 pos 1578-11630 IS confused by 5' edge to read 228797 - best edge read 373245 len 1311 erate 0.0207 score 1283.86 - alt edge len 1226 erate 0.0296 score 1189.71 - absdiff 94.15 percdiff 7.6126 tig 3546 read 119497 pos 1578-11630 IS confused by 5' edge to read 480746 - best edge read 373245 len 1311 erate 0.0207 score 1283.86 - alt edge len 1156 erate 0.0323 score 1118.66 - absdiff 165.20 percdiff 13.7523 tig 3546 read 373245 pos 10319-16895 IS confused by 5' edge to read 202528 - best edge read 119497 len 1314 erate 0.0207 score 1286.80 - alt edge len 969 erate 0.0207 score 948.94 - absdiff 337.86 percdiff 30.2234 saved region 4994:16875 - 3 best edges are potentially confused break tig 3546 into up to 2 pieces: 0 4494 unique (length 4494) 4494 16895 repeat (length 12401) Creating Unitig 91126 Creating Unitig 91127 For tig 3546 unique region 0 4494 - 0/ 10 reads repeat/unique - unitig 91126 created. For tig 3546 repeat region 4494 16895 - 16/ 0 reads repeat/unique - unitig 91127 created. Annotating repeats in reads for tig 3547/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 630:6346 - contained in read 119770 12- 7644 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3551/90584. Annotated with 51 overlaps. Scan reads to discard spanned repeats. discard region 3359:5153 - contained in read 352849 0- 9619 discard region 9937:14549 - contained in read 196498 7382- 14558 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3553/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2614:3319 - contained in read 197301 815- 5127 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3556/90584. Annotated with 86 overlaps. Scan reads to discard spanned repeats. discard region 4186:8385 - contained in read 404097 2859- 9219 discard region 8606:9330 - contained in read 197878 4187- 9339 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3559/90584. Annotated with 51 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4735:7276 - closest read 347336 ( +291) 4444:9754 ( +2478) (contained) saved region 4735:7276 - closest read 376387 ( +291) 4444:9752 ( +2476) (contained) saved region 4735:7276 - closest read 347337 ( +277) 4458:9775 ( +2499) (contained) saved region 4735:7276 - closest read 347335 ( +261) 4474:9795 ( +2519) (contained) saved region 4735:7276 - closest read 347334 ( +261) 4474:9788 ( +2512) (contained) saved region 4735:7276 - closest 5' read 347335 ( +261) 4474:9795 ( +2519) saved region 4735:7276 - closest 3' read 347336 ( +291) 4444:9754 ( +2478) search for confused edges: discard region 4735:7276 - no confusion in best edges Annotating repeats in reads for tig 3561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3569/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 840:2101 - contained in read 102423 0- 5023 discard region 3844:2686 - contained in read 102423 0- 5023 discard region 4119:2689 - contained in read 102423 0- 5023 discard region 4196:6619 - contained in read 449370 2039- 8212 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3570/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1108:171 - contained in read 206396 0- 3836 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3576/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3923:8479 - closest 5' read 305785 ( +3872) 51:7842 ( -637) saved region 3923:8479 - closest 3' read 43665 ( -186) 4109:8481 ( +2) search for confused edges: tig 3576 read 43665 pos 4109-8481 NOT confused by 3' edge to read 344987 - best edge read 305785 len 3733 erate 0.0220 score 3650.87 - alt edge len 1539 erate 0.0403 score 1476.98 - absdiff 2173.90 percdiff 84.7878 discard region 3923:8479 - no confusion in best edges Annotating repeats in reads for tig 3577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3578/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3579/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3584/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3585/90584. Annotated with 467 overlaps. Scan reads to discard spanned repeats. discard region 2449:8279 - contained in read 412709 29- 8279 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3586/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3587/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 10063:11648 - contained in read 285430 6128- 11837 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3592/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 3807:4722 - contained in read 410811 12- 6049 discard region 7985:8616 - contained in read 467006 896- 10327 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3595/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 2:7512 - contained in read 446809 0- 9025 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3596/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3600/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3605/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 3145:5141 - contained in read 217351 0- 6397 discard region 5293:11968 - contained in read 273699 3163- 11968 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3612/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 357:1270 - contained in read 220096 0- 3931 discard region 1696:2773 - contained in read 220096 0- 3931 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3614/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5986:6577 - contained in read 99245 623- 7386 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3622/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8746:10892 - contained in read 380065 1678- 11173 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3626/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3628/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6921:10051 - closest 5' read 67414 ( +4655) 2266:9366 ( -685) saved region 6921:10051 - closest 3' read 493758 ( -401) 7322:13454 ( +3403) search for confused edges: discard region 6921:10051 - no confusion in best edges Annotating repeats in reads for tig 3629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3645/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3648/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3657/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1187:2745 - contained in read 235398 0- 5490 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3658/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3663/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3668/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3674/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3678/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3876:6371 - contained in read 8753 20- 6395 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3682/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3684/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 432:984 - contained in read 247632 0- 5178 discard region 4436:5282 - contained in read 464652 150- 7236 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3686/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 3684:6575 - contained in read 248343 20- 6814 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3688/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3693/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3694/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6568:4922 - contained in read 251913 0- 5971 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3696/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1545:2146 - contained in read 253458 0- 3261 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3699/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3701/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3705/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3706/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3711/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 968:3 - contained in read 259618 0- 6294 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3712/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 1:2038 - contained in read 437566 0- 5589 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3714/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3721/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 254:836 - contained in read 262390 0- 4961 discard region 1324:1903 - contained in read 262390 0- 4961 thickest edges to the repeat regions: saved region 1963:7042 - closest 5' read 150625 ( +624) 1339:6031 ( -1011) saved region 1963:7042 - closest 3' read 451838 ( -6) 1969:7057 ( +15) search for confused edges: discard region 1963:7042 - no confusion in best edges Annotating repeats in reads for tig 3722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3726/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5268:1944 - contained in read 265838 0- 5255 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3728/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3730/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8479:8995 - contained in read 217036 2163- 9703 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3733/90584. Annotated with 103 overlaps. Scan reads to discard spanned repeats. discard region 0:2965 - contained in read 268625 0- 4739 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3738/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:3516 - contained in read 342163 0- 7061 thickest edges to the repeat regions: saved region 6488:7018 - closest read 342163 ( +6488) 0:7061 ( +43) (contained) saved region 6488:7018 - closest read 342162 ( +6483) 5:7058 ( +40) (contained) saved region 6488:7018 - closest read 342161 ( +6470) 18:7056 ( +38) (contained) saved region 6488:7018 - closest read 269716 ( +0) 6488:18015 (+10997) (contained) saved region 6488:7018 - closest read 269718 ( +0) 6488:17447 (+10429) (contained) saved region 6488:7018 - closest 5' read 269716 ( +0) 6488:18015 (+10997) saved region 6488:7018 - closest 3' read 342163 ( +6488) 0:7061 ( +43) search for confused edges: discard region 6488:7018 - no confusion in best edges Annotating repeats in reads for tig 3740/90584. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 7962:12927 - contained in read 436669 6623- 14348 thickest edges to the repeat regions: saved region 21103:25627 - closest 5' read 16255 ( +7318) 13785:22464 ( -3163) saved region 21103:25627 - closest 3' read 92671 ( -205) 21308:30385 ( +4758) search for confused edges: discard region 21103:25627 - no confusion in best edges Annotating repeats in reads for tig 3744/90584. Annotated with 111 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4309:14834 - closest 5' read 462364 ( +2043) 2266:11691 ( -3143) saved region 4309:14834 - closest 3' read 85873 ( -547) 4856:14834 ( +0) search for confused edges: tig 3744 read 462364 pos 2266-11691 NOT confused by 3' edge to read 43804 - best edge read 85875 len 6857 erate 0.0241 score 6691.75 - alt edge len 1050 erate 0.0105 score 1038.98 - absdiff 5652.77 percdiff 146.2418 tig 3744 read 462364 pos 2266-11691 NOT confused by 3' edge to read 78061 - best edge read 85875 len 6857 erate 0.0241 score 6691.75 - alt edge len 639 erate 0.0284 score 620.85 - absdiff 6070.89 percdiff 166.0393 tig 3744 read 85875 pos 4834-13326 NOT confused by 3' edge to read 43804 - best edge read 85873 len 8470 erate 0.0218 score 8285.35 - alt edge len 2695 erate 0.0171 score 2648.92 - absdiff 5636.44 percdiff 103.0968 tig 3744 read 85875 pos 4834-13326 NOT confused by 3' edge to read 78061 - best edge read 85873 len 8470 erate 0.0218 score 8285.35 - alt edge len 2285 erate 0.0281 score 2220.79 - absdiff 6064.56 percdiff 115.4479 tig 3744 read 85875 pos 4834-13326 NOT confused by 3' edge to read 78065 - best edge read 85873 len 8470 erate 0.0218 score 8285.35 - alt edge len 2232 erate 0.0368 score 2149.86 - absdiff 6135.49 percdiff 117.5920 tig 3744 read 85875 pos 4834-13326 NOT confused by 5' edge to read 374809 - best edge read 462364 len 6841 erate 0.0241 score 6676.13 - alt edge len 1080 erate 0.0371 score 1039.93 - absdiff 5636.20 percdiff 146.0900 tig 3744 read 85875 pos 4834-13326 NOT confused by 5' edge to read 444472 - best edge read 462364 len 6841 erate 0.0241 score 6676.13 - alt edge len 1873 erate 0.0310 score 1814.94 - absdiff 4861.19 percdiff 114.5014 tig 3744 read 85873 pos 4856-14834 NOT confused by 5' edge to read 374809 - best edge read 85875 len 8431 erate 0.0218 score 8247.20 - alt edge len 1049 erate 0.0391 score 1007.98 - absdiff 7239.22 percdiff 156.4359 tig 3744 read 85873 pos 4856-14834 NOT confused by 5' edge to read 444472 - best edge read 85875 len 8431 erate 0.0218 score 8247.20 - alt edge len 1847 erate 0.0320 score 1787.90 - absdiff 6459.31 percdiff 128.7343 discard region 4309:14834 - no confusion in best edges Annotating repeats in reads for tig 3750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3753/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 12619:13259 - contained in read 514288 8950- 14884 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3758/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 765:3409 - contained in read 275189 0- 6403 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3763/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3771/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 0:3227 - contained in read 76441 0- 6019 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3772/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 3306:4022 - contained in read 279683 0- 7621 thickest edges to the repeat regions: saved region 4203:7766 - closest read 306597 ( +898) 3305:7974 ( +208) (contained) saved region 4203:7766 - closest read 306595 ( +896) 3307:8093 ( +327) (contained) saved region 4203:7766 - closest read 306601 ( +859) 3344:8006 ( +240) (contained) saved region 4203:7766 - closest read 306598 ( +856) 3347:8092 ( +326) (contained) saved region 4203:7766 - closest 5' read 306595 ( +896) 3307:8093 ( +327) saved region 4203:7766 - closest 3' read 306597 ( +898) 3305:7974 ( +208) search for confused edges: discard region 4203:7766 - no confusion in best edges Annotating repeats in reads for tig 3775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3782/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3791/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3793/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3798/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3799/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4113:3583 - contained in read 366936 0- 6518 discard region 8300:10558 - contained in read 288696 5689- 11987 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3817/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 0:546 - contained in read 298551 0- 6162 discard region 4320:6230 - contained in read 269335 3228- 9921 thickest edges to the repeat regions: saved region 8967:10004 - closest read 269332 ( +5583) 3384:10023 ( +19) (contained) saved region 8967:10004 - closest read 458987 ( +0) 8967:16035 ( +6031) (contained) saved region 8967:10004 - closest 5' read 458987 ( +0) 8967:16035 ( +6031) saved region 8967:10004 - closest 3' read 269332 ( +5583) 3384:10023 ( +19) search for confused edges: discard region 8967:10004 - no confusion in best edges Annotating repeats in reads for tig 3818/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3829/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1184:4883 - contained in read 302715 0- 6319 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3835/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:4071 - closest read 495882 ( +0) 0:4451 ( +380) (contained) saved region 0:4071 - closest 5' read 495882 ( +0) 0:4451 ( +380) saved region 0:4071 - closest 3' read 495882 ( +0) 0:4451 ( +380) search for confused edges: discard region 0:4071 - no confusion in best edges Annotating repeats in reads for tig 3837/90584. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 2186:3233 - contained in read 305870 0- 4643 discard region 3255:10046 - contained in read 176717 1920- 10046 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3840/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 2776:5352 - contained in read 471989 239- 8270 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3841/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3848/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 13541:15792 - contained in read 328867 12046- 18494 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3849/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5053:9076 - closest read 306218 ( +19) 5034:9480 ( +404) (contained) saved region 5053:9076 - closest 5' read 306218 ( +19) 5034:9480 ( +404) saved region 5053:9076 - closest 3' read 306218 ( +19) 5034:9480 ( +404) search for confused edges: discard region 5053:9076 - no confusion in best edges Annotating repeats in reads for tig 3851/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10284:9594 - contained in read 51464 4755- 10282 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3854/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3860/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3870/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3872/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3874/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 0:4303 - contained in read 318047 0- 5808 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3877/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3880/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3884/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3887/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3891/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3895/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 15:6199 - closest 5' read 340867 ( +15) 0:6046 ( -153) saved region 15:6199 - closest 3' read 325319 ( -4762) 4777:6244 ( +45) search for confused edges: tig 3895 read 325318 pos 4538-6191 IS confused by 3' edge to read 365469 - best edge read 340867 len 1508 erate 0.0438 score 1441.95 - alt edge len 650 erate 0.0417 score 622.89 - absdiff 819.05 percdiff 79.3333 tig 3895 read 325319 pos 4777-6244 IS confused by 5' edge to read 365468 - best edge read 325318 len 1414 erate 0.0251 score 1378.51 - alt edge len 1260 erate 0.0223 score 1231.90 - absdiff 146.61 percdiff 11.2325 saved region 15:6199 - 2 best edges are potentially confused Annotating repeats in reads for tig 3898/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2547:1298 - contained in read 326326 0- 4504 discard region 6695:7716 - contained in read 462664 3491- 8663 discard region 8103:8662 - contained in read 186877 3555- 9276 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3899/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3902/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3903/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3908/90584. Annotated with 54 overlaps. Scan reads to discard spanned repeats. discard region 2:6467 - contained in read 202528 0- 7653 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3914/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1:6533 - contained in read 330081 0- 10205 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3915/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1546:0 - contained in read 40844 0- 9191 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3924/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14217:19124 - closest 5' read 202806 ( +11) 14206:18341 ( -783) saved region 14217:19124 - closest 3' read 255834 ( -353) 14570:21038 ( +1914) search for confused edges: discard region 14217:19124 - no confusion in best edges Annotating repeats in reads for tig 3926/90584. Annotated with 278 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2397:17295 - closest 5' read 333176 ( +2397) 0:6143 (-11152) saved region 2397:17295 - closest 3' read 83188 ( -6374) 8771:17295 ( +0) search for confused edges: tig 3926 read 333176 pos 0-6143 IS confused by 3' edge to read 83188 - best edge read 295847 len 1911 erate 0.0359 score 1842.40 - alt edge len 1435 erate 0.0275 score 1395.54 - absdiff 446.86 percdiff 27.6014 tig 3926 read 333176 pos 0-6143 IS confused by 3' edge to read 143522 - best edge read 295847 len 1911 erate 0.0359 score 1842.40 - alt edge len 1252 erate 0.0340 score 1209.43 - absdiff 632.96 percdiff 41.4809 tig 3926 read 333176 pos 0-6143 IS confused by 3' edge to read 239843 - best edge read 295847 len 1911 erate 0.0359 score 1842.40 - alt edge len 1812 erate 0.0300 score 1757.64 - absdiff 84.76 percdiff 4.7086 tig 3926 read 333176 pos 0-6143 IS confused by 3' edge to read 413944 - best edge read 295847 len 1911 erate 0.0359 score 1842.40 - alt edge len 1782 erate 0.0294 score 1729.61 - absdiff 112.79 percdiff 6.3150 tig 3926 read 150921 pos 4106-11609 IS confused by 3' edge to read 334893 - best edge read 295847 len 3052 erate 0.0171 score 2999.81 - alt edge len 1198 erate 0.0434 score 1146.01 - absdiff 1853.80 percdiff 89.4301 tig 3926 read 150921 pos 4106-11609 NOT confused by 5' edge to read 413944 - best edge read 143522 len 5051 erate 0.0254 score 4922.70 - alt edge len 2392 erate 0.0181 score 2348.70 - absdiff 2574.00 percdiff 70.7978 tig 3926 read 295847 pos 4232-11349 NOT confused by 5' edge to read 413944 - best edge read 295846 len 7108 erate 0.0182 score 6978.63 - alt edge len 3233 erate 0.0189 score 3171.90 - absdiff 3806.74 percdiff 75.0057 tig 3926 read 295846 pos 4241-11325 NOT confused by 3' edge to read 413944 - best edge read 143522 len 4698 erate 0.0264 score 4573.97 - alt edge len 1893 erate 0.0217 score 1851.92 - absdiff 2722.05 percdiff 84.7213 tig 3926 read 143522 pos 6627-15324 NOT confused by 5' edge to read 333176 - best edge read 83188 len 7115 erate 0.0268 score 6924.32 - alt edge len 1241 erate 0.0340 score 1198.81 - absdiff 5725.51 percdiff 140.9682 tig 3926 read 143522 pos 6627-15324 IS confused by 3' edge to read 413944 - best edge read 239843 len 6961 erate 0.0287 score 6761.22 - alt edge len 5524 erate 0.0334 score 5339.50 - absdiff 1421.72 percdiff 23.4981 tig 3926 read 239843 pos 8363-16136 NOT confused by 5' edge to read 333176 - best edge read 143522 len 6903 erate 0.0287 score 6704.88 - alt edge len 1804 erate 0.0300 score 1749.88 - absdiff 4955.00 percdiff 117.2121 tig 3926 read 239843 pos 8363-16136 NOT confused by 3' edge to read 413944 - best edge read 83188 len 7365 erate 0.0224 score 7200.02 - alt edge len 2428 erate 0.0252 score 2366.81 - absdiff 4833.21 percdiff 101.0409 tig 3926 read 83188 pos 8771-17295 NOT confused by 5' edge to read 333176 - best edge read 239843 len 7369 erate 0.0224 score 7203.93 - alt edge len 1418 erate 0.0275 score 1379.01 - absdiff 5824.93 percdiff 135.7327 tig 3926 read 83188 pos 8771-17295 NOT confused by 5' edge to read 334893 - best edge read 239843 len 7369 erate 0.0224 score 7203.93 - alt edge len 1090 erate 0.0340 score 1052.94 - absdiff 6150.99 percdiff 148.9909 saved region 2397:17295 - 6 best edges are potentially confused break tig 3926 into up to 2 pieces: 0 1897 unique (length 1897) 1897 17295 repeat (length 15398) Creating Unitig 91128 Creating Unitig 91129 For tig 3926 unique region 0 1897 - 0/ 2 reads repeat/unique - unitig 91128 created. For tig 3926 repeat region 1897 17295 - 90/ 0 reads repeat/unique - unitig 91129 created. Annotating repeats in reads for tig 3928/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13379:16006 - closest read 478661 ( +0) 13379:21059 ( +5053) (contained) saved region 13379:16006 - closest 5' read 478661 ( +0) 13379:21059 ( +5053) saved region 13379:16006 - closest 3' read 478661 ( +0) 13379:21059 ( +5053) search for confused edges: discard region 13379:16006 - no confusion in best edges Annotating repeats in reads for tig 3929/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11508:12211 - contained in read 333859 10443- 12896 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3933/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 3492:4144 - contained in read 346748 0- 5538 discard region 10454:11070 - contained in read 390919 8288- 14154 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3934/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3773:6894 - contained in read 141409 2800- 8615 discard region 8240:7514 - contained in read 141409 2800- 8615 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3935/90584. Annotated with 43 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3242:7879 - closest read 347874 ( +30) 3212:7879 ( +0) (contained) saved region 3242:7879 - closest 5' read 347874 ( +30) 3212:7879 ( +0) saved region 3242:7879 - closest 3' read 347874 ( +30) 3212:7879 ( +0) search for confused edges: discard region 3242:7879 - no confusion in best edges Annotating repeats in reads for tig 3941/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3686:4737 - contained in read 338333 0- 5924 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3944/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3957/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3274:3858 - contained in read 438819 0- 6634 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3962/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 3979:3268 - contained in read 16535 0- 6427 discard region 5486:4929 - contained in read 16535 0- 6427 discard region 5651:5111 - contained in read 16535 0- 6427 discard region 6794:8613 - contained in read 487855 4863- 9668 discard region 8809:10535 - contained in read 345373 6819- 13933 discard region 11647:13101 - contained in read 345373 6819- 13933 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3970/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1806:5248 - contained in read 347664 0- 11495 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3978/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5769:6826 - contained in read 349299 0- 8040 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3984/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 453:1244 - contained in read 248695 0- 5353 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3985/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 7394:10490 - contained in read 352975 5026- 11226 thickest edges to the repeat regions: saved region 4896:6867 - closest read 241108 ( +203) 4693:9463 ( +2596) (contained) saved region 4896:6867 - closest 5' read 241108 ( +203) 4693:9463 ( +2596) saved region 4896:6867 - closest 3' read 241108 ( +203) 4693:9463 ( +2596) search for confused edges: discard region 4896:6867 - no confusion in best edges Annotating repeats in reads for tig 3986/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3987/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3990/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 13707:17379 - contained in read 343268 11162- 18644 discard region 17522:19504 - contained in read 465295 11672- 20236 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3991/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 0:7401 - contained in read 388494 0- 8009 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3992/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7045:1924 - contained in read 509617 0- 7498 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 3999/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. discard region 14816:18183 - contained in read 44059 11131- 18183 thickest edges to the repeat regions: saved region 10765:12543 - closest read 403417 ( +4316) 6449:12643 ( +100) (contained) saved region 10765:12543 - closest read 403414 ( +4292) 6473:12657 ( +114) (contained) saved region 10765:12543 - closest read 403416 ( +2071) 8694:12557 ( +14) (contained) saved region 10765:12543 - closest 5' read 403414 ( +4292) 6473:12657 ( +114) saved region 10765:12543 - closest 3' read 403417 ( +4316) 6449:12643 ( +100) search for confused edges: discard region 10765:12543 - no confusion in best edges Annotating repeats in reads for tig 4006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4008/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4:4506 - closest read 448387 ( +4) 0:4773 ( +267) (contained) saved region 4:4506 - closest 5' read 448387 ( +4) 0:4773 ( +267) saved region 4:4506 - closest 3' read 448387 ( +4) 0:4773 ( +267) search for confused edges: discard region 4:4506 - no confusion in best edges Annotating repeats in reads for tig 4011/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 1166:4306 - contained in read 350355 0- 6345 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4019/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 1:3739 - contained in read 54150 0- 6134 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4020/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 1006:0 - contained in read 445461 0- 6266 discard region 1037:1 - contained in read 445461 0- 6266 discard region 5018:5621 - contained in read 445461 0- 6266 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4027/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2798:4619 - contained in read 369164 0- 6447 thickest edges to the repeat regions: saved region 4974:10402 - closest 5' read 104903 ( +9) 4965:8553 ( -1849) saved region 4974:10402 - closest 3' read 29161 ( -1667) 6641:14588 ( +4186) search for confused edges: discard region 4974:10402 - no confusion in best edges Annotating repeats in reads for tig 4035/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4037/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4044/90584. Annotated with 316 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13869:19550 - closest 5' read 28248 ( +3842) 10027:16180 ( -3370) saved region 13869:19550 - closest 3' read 355140 ( -213) 14082:19807 ( +257) search for confused edges: discard region 13869:19550 - no confusion in best edges Annotating repeats in reads for tig 4046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4050/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4763:8936 - contained in read 438407 3162- 11703 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4055/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 3:4524 - contained in read 398476 0- 10328 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4059/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4062/90584. Annotated with 68 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5598:6190 - closest read 59897 ( +163) 5435:13812 ( +7622) (contained) saved region 5598:6190 - closest 5' read 59897 ( +163) 5435:13812 ( +7622) saved region 5598:6190 - closest 3' read 59897 ( +163) 5435:13812 ( +7622) saved region 10291:18431 - closest read 311617 ( +1145) 9146:18588 ( +157) (contained) saved region 10291:18431 - closest 5' read 311617 ( +1145) 9146:18588 ( +157) saved region 10291:18431 - closest 3' read 311617 ( +1145) 9146:18588 ( +157) search for confused edges: discard region 5598:6190 - no confusion in best edges discard region 10291:18431 - no confusion in best edges Annotating repeats in reads for tig 4065/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4067/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 31:4428 - contained in read 384161 0- 10292 discard region 5890:6532 - contained in read 384161 0- 10292 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4072/90584. Annotated with 56 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1460:3423 - closest read 197342 ( +1460) 0:3431 ( +8) (contained) saved region 1460:3423 - closest read 272438 ( +256) 1204:3824 ( +401) (contained) saved region 1460:3423 - closest read 45030 ( +176) 1284:7344 ( +3921) (contained) saved region 1460:3423 - closest read 45029 ( +159) 1301:7310 ( +3887) (contained) saved region 1460:3423 - closest 5' read 45030 ( +176) 1284:7344 ( +3921) saved region 1460:3423 - closest 3' read 197342 ( +1460) 0:3431 ( +8) saved region 4579:7686 - closest 5' read 45030 ( +3295) 1284:7344 ( -342) saved region 4579:7686 - closest 3' read 384063 ( -1522) 6101:12306 ( +4620) saved region 10860:13742 - closest 5' read 384069 ( +4753) 6107:12683 ( -1059) saved region 10860:13742 - closest 3' read 119600 ( -2) 10862:13935 ( +193) search for confused edges: discard region 1460:3423 - no confusion in best edges discard region 4579:7686 - no confusion in best edges discard region 10860:13742 - no confusion in best edges Annotating repeats in reads for tig 4074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4077/90584. Annotated with 96 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4232:13114 - closest 5' read 186478 ( +670) 3562:13071 ( -43) saved region 4232:13114 - closest 3' read 356799 ( -37) 4269:13114 ( +0) search for confused edges: tig 4077 read 186478 pos 3562-13071 NOT confused by 3' edge to read 15684 - best edge read 356799 len 8802 erate 0.0179 score 8644.44 - alt edge len 760 erate 0.0447 score 726.03 - absdiff 7918.42 percdiff 169.0078 tig 4077 read 186478 pos 3562-13071 NOT confused by 3' edge to read 150178 - best edge read 356799 len 8802 erate 0.0179 score 8644.44 - alt edge len 4525 erate 0.0184 score 4441.74 - absdiff 4202.70 percdiff 64.2312 tig 4077 read 186478 pos 3562-13071 IS confused by 3' edge to read 192032 - best edge read 356799 len 8802 erate 0.0179 score 8644.44 - alt edge len 8360 erate 0.0183 score 8207.01 - absdiff 437.43 percdiff 5.1916 tig 4077 read 186478 pos 3562-13071 NOT confused by 3' edge to read 235559 - best edge read 356799 len 8802 erate 0.0179 score 8644.44 - alt edge len 5702 erate 0.0169 score 5605.64 - absdiff 3038.81 percdiff 42.6497 tig 4077 read 356799 pos 4269-13114 NOT confused by 3' edge to read 180671 - best edge read 186478 len 8774 erate 0.0179 score 8616.95 - alt edge len 826 erate 0.0327 score 798.99 - absdiff 7817.96 percdiff 166.0580 tig 4077 read 356799 pos 4269-13114 NOT confused by 3' edge to read 180673 - best edge read 186478 len 8774 erate 0.0179 score 8616.95 - alt edge len 833 erate 0.0348 score 804.01 - absdiff 7812.93 percdiff 165.8628 tig 4077 read 356799 pos 4269-13114 NOT confused by 3' edge to read 332202 - best edge read 186478 len 8774 erate 0.0179 score 8616.95 - alt edge len 6269 erate 0.0140 score 6181.23 - absdiff 2435.71 percdiff 32.9191 tig 4077 read 356799 pos 4269-13114 IS confused by 3' edge to read 490797 - best edge read 186478 len 8774 erate 0.0179 score 8616.95 - alt edge len 7977 erate 0.0129 score 7874.10 - absdiff 742.85 percdiff 9.0091 saved region 4232:13114 - 2 best edges are potentially confused break tig 4077 into up to 2 pieces: 0 3732 unique (length 3732) 3732 13114 repeat (length 9382) Creating Unitig 91130 Creating Unitig 91131 For tig 4077 unique region 0 3732 - 0/ 8 reads repeat/unique - unitig 91130 created. For tig 4077 repeat region 3732 13114 - 42/ 0 reads repeat/unique - unitig 91131 created. Annotating repeats in reads for tig 4081/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6091:10796 - closest read 502423 ( +2985) 3106:10810 ( +14) (contained) saved region 6091:10796 - closest 5' read 502423 ( +2985) 3106:10810 ( +14) saved region 6091:10796 - closest 3' read 502423 ( +2985) 3106:10810 ( +14) search for confused edges: discard region 6091:10796 - no confusion in best edges Annotating repeats in reads for tig 4086/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1296:4274 - contained in read 389096 0- 6144 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4087/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4095/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 9473:13425 - contained in read 381120 8095- 14178 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4097/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3936:11250 - closest 5' read 528234 ( +1229) 2707:11029 ( -221) saved region 3936:11250 - closest 3' read 37450 ( -3) 3939:11316 ( +66) search for confused edges: discard region 3936:11250 - no confusion in best edges Annotating repeats in reads for tig 4100/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 0:7146 - contained in read 393684 0- 12107 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4101/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 6801:7582 - contained in read 477633 1788- 13284 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4107/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 1526:4175 - contained in read 395878 0- 6587 thickest edges to the repeat regions: saved region 4383:6590 - closest read 395876 ( +4366) 17:6591 ( +1) (contained) saved region 4383:6590 - closest read 395881 ( +4342) 41:6593 ( +3) (contained) saved region 4383:6590 - closest read 107415 ( +2857) 1526:6614 ( +24) (contained) saved region 4383:6590 - closest read 473343 ( +2471) 1912:6593 ( +3) (contained) saved region 4383:6590 - closest 5' read 107415 ( +2857) 1526:6614 ( +24) saved region 4383:6590 - closest 3' read 395876 ( +4366) 17:6591 ( +1) search for confused edges: discard region 4383:6590 - no confusion in best edges Annotating repeats in reads for tig 4115/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4122/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2614:7605 - closest 5' read 202451 ( +2368) 246:6351 ( -1254) saved region 2614:7605 - closest 3' read 346773 ( -33) 2647:8997 ( +1392) search for confused edges: tig 4122 read 120488 pos 87-5318 IS confused by 5' edge to read 11959 - best edge read 346773 len 2671 erate 0.0157 score 2629.07 - alt edge len 1056 erate 0.0228 score 1031.92 - absdiff 1597.14 percdiff 87.2520 saved region 2614:7605 - 1 best edges are potentially confused break tig 4122 into up to 3 pieces: 0 2114 unique (length 2114) 2114 8105 repeat (length 5991) 8105 8997 unique (length 892) Creating Unitig 91132 Creating Unitig 91133 Creating Unitig 91134 For tig 4122 unique region 0 2114 - 0/ 5 reads repeat/unique - unitig 91132 created. For tig 4122 repeat region 2114 8105 - 15/ 0 reads repeat/unique - unitig 91133 created. For tig 4122 unique region 8105 8997 - 0/ 2 reads repeat/unique - unitig 91134 created. Annotating repeats in reads for tig 4128/90584. Annotated with 176 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6350:8627 - closest read 510251 ( +1994) 4356:8635 ( +8) (contained) saved region 6350:8627 - closest 5' read 510251 ( +1994) 4356:8635 ( +8) saved region 6350:8627 - closest 3' read 510251 ( +1994) 4356:8635 ( +8) saved region 10157:12705 - closest read 403100 ( +3) 10154:19056 ( +6351) (contained) saved region 10157:12705 - closest 5' read 403100 ( +3) 10154:19056 ( +6351) saved region 10157:12705 - closest 3' read 403100 ( +3) 10154:19056 ( +6351) search for confused edges: tig 4128 read 403099 pos 10189-18596 IS confused by 3' edge to read 56789 - best edge read 390718 len 2514 erate 0.0442 score 2402.88 - alt edge len 2447 erate 0.0380 score 2354.01 - absdiff 48.87 percdiff 2.0546 tig 4128 read 403099 pos 10189-18596 IS confused by 3' edge to read 56790 - best edge read 390718 len 2514 erate 0.0442 score 2402.88 - alt edge len 2452 erate 0.0387 score 2357.11 - absdiff 45.77 percdiff 1.9233 tig 4128 read 403099 pos 10189-18596 IS confused by 3' edge to read 193560 - best edge read 390718 len 2514 erate 0.0442 score 2402.88 - alt edge len 1523 erate 0.0420 score 1459.03 - absdiff 943.85 percdiff 48.8797 tig 4128 read 403099 pos 10189-18596 IS confused by 3' edge to read 323880 - best edge read 390718 len 2514 erate 0.0442 score 2402.88 - alt edge len 2472 erate 0.0425 score 2366.94 - absdiff 35.94 percdiff 1.5070 tig 4128 read 403099 pos 10189-18596 IS confused by 3' edge to read 370305 - best edge read 390718 len 2514 erate 0.0442 score 2402.88 - alt edge len 2496 erate 0.0329 score 2413.88 - absdiff 11.00 percdiff 0.4568 tig 4128 read 403099 pos 10189-18596 IS confused by 3' edge to read 462081 - best edge read 390718 len 2514 erate 0.0442 score 2402.88 - alt edge len 1737 erate 0.0397 score 1668.04 - absdiff 734.84 percdiff 36.1019 tig 4128 read 403099 pos 10189-18596 IS confused by 3' edge to read 514951 - best edge read 390718 len 2514 erate 0.0442 score 2402.88 - alt edge len 2483 erate 0.0330 score 2401.06 - absdiff 1.82 percdiff 0.0758 discard region 6350:8627 - no confusion in best edges saved region 10157:12705 - 7 best edges are potentially confused break tig 4128 into up to 3 pieces: 0 9657 unique (length 9657) 9657 13205 repeat (length 3548) 13205 19056 unique (length 5851) Creating Unitig 91135 Creating Unitig 91136 Creating Unitig 91137 For tig 4128 unique region 0 9657 - 0/ 22 reads repeat/unique - unitig 91135 created. For tig 4128 repeat region 9657 13205 - 49/ 0 reads repeat/unique - unitig 91136 created. For tig 4128 unique region 13205 19056 - 0/ 4 reads repeat/unique - unitig 91137 created. Annotating repeats in reads for tig 4129/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5377:9508 - contained in read 53220 3386- 10012 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4160/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4162/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2822:1580 - contained in read 410066 0- 13841 discard region 12214:7264 - contained in read 410066 0- 13841 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4168/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:3150 - contained in read 255629 0- 4468 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4176/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7970:10553 - closest read 472678 ( +3135) 4835:10558 ( +5) (contained) saved region 7970:10553 - closest read 472679 ( +1117) 6853:10559 ( +6) (contained) saved region 7970:10553 - closest 5' read 472679 ( +1117) 6853:10559 ( +6) saved region 7970:10553 - closest 3' read 472678 ( +3135) 4835:10558 ( +5) search for confused edges: discard region 7970:10553 - no confusion in best edges Annotating repeats in reads for tig 4180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4188/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2761:3450 - contained in read 418692 0- 5826 discard region 5046:8216 - contained in read 53866 1054- 8216 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4189/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:2079 - contained in read 92644 0- 6164 discard region 3459:5522 - contained in read 92644 0- 6164 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4200/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5310:6534 - closest read 423375 ( +4) 5306:11949 ( +5415) (contained) saved region 5310:6534 - closest 5' read 423375 ( +4) 5306:11949 ( +5415) saved region 5310:6534 - closest 3' read 423375 ( +4) 5306:11949 ( +5415) search for confused edges: discard region 5310:6534 - no confusion in best edges Annotating repeats in reads for tig 4204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4217/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7868:11634 - closest 5' read 42577 ( +1877) 5991:11619 ( -15) saved region 7868:11634 - closest 3' read 196143 ( -726) 8594:15568 ( +3934) search for confused edges: discard region 7868:11634 - no confusion in best edges Annotating repeats in reads for tig 4232/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:6164 - contained in read 384667 0- 11148 discard region 6474:11392 - contained in read 432382 3760- 13852 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4239/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1764:2504 - contained in read 434282 0- 5596 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4253/90584. Annotated with 1257 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:26380 - closest 5' read 17977 ( +0) 0:16476 ( -9904) saved region 0:26380 - closest 3' read 437317 ( -8560) 8560:26380 ( +0) search for confused edges: tig 4253 read 328749 pos 1220-16956 NOT confused by 3' edge to read 259364 - best edge read 17977 len 15256 erate 0.0111 score 15086.66 - alt edge len 832 erate 0.0397 score 798.97 - absdiff 14287.69 percdiff 179.8820 tig 4253 read 328749 pos 1220-16956 NOT confused by 3' edge to read 259365 - best edge read 17977 len 15256 erate 0.0111 score 15086.66 - alt edge len 3602 erate 0.0139 score 3551.93 - absdiff 11534.73 percdiff 123.7725 tig 4253 read 322667 pos 1317-21799 NOT confused by 3' edge to read 5771 - best edge read 437317 len 13188 erate 0.0133 score 13012.60 - alt edge len 2719 erate 0.0338 score 2627.10 - absdiff 10385.50 percdiff 132.8095 discard region 0:26380 - no confusion in best edges Annotating repeats in reads for tig 4260/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4:4528 - contained in read 438975 0- 5844 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4262/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4263/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 0:4850 - contained in read 271108 0- 7770 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4265/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13369:12203 - contained in read 458284 6698- 15618 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4268/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9848:11318 - contained in read 493389 6883- 12306 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4271/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 9740:11195 - contained in read 210051 7589- 12517 thickest edges to the repeat regions: saved region 7580:8618 - closest 5' read 486363 ( +5868) 1712:8194 ( -424) saved region 7580:8618 - closest 3' read 210051 ( -9) 7589:12517 ( +3899) search for confused edges: discard region 7580:8618 - no confusion in best edges Annotating repeats in reads for tig 4275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4281/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8301:15640 - closest 5' read 114469 ( +148) 8153:13845 ( -1795) saved region 8301:15640 - closest 3' read 425177 ( -24) 8325:16125 ( +485) search for confused edges: tig 4281 read 14638 pos 5829-13213 NOT confused by 3' edge to read 475505 - best edge read 425177 len 4888 erate 0.0115 score 4831.79 - alt edge len 832 erate 0.0121 score 821.93 - absdiff 4009.86 percdiff 141.8484 discard region 8301:15640 - no confusion in best edges Annotating repeats in reads for tig 4288/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4692:6703 - contained in read 447880 9- 6703 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4304/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4741:6598 - contained in read 453148 725- 6611 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4314/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4325/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 22275:24842 - contained in read 387510 21366- 25689 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4338/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4339/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5746:6766 - contained in read 462305 207- 6784 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4343/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 10807:12225 - contained in read 418475 4749- 12225 thickest edges to the repeat regions: saved region 3801:5919 - closest read 463285 ( +3801) 0:5930 ( +11) (contained) saved region 3801:5919 - closest read 463286 ( +3791) 10:5932 ( +13) (contained) saved region 3801:5919 - closest read 463287 ( +3790) 11:5919 ( +0) (contained) saved region 3801:5919 - closest read 312212 ( +43) 3758:11030 ( +5111) (contained) saved region 3801:5919 - closest 5' read 312212 ( +43) 3758:11030 ( +5111) saved region 3801:5919 - closest 3' read 463285 ( +3801) 0:5930 ( +11) search for confused edges: discard region 3801:5919 - no confusion in best edges Annotating repeats in reads for tig 4344/90584. Annotated with 74 overlaps. Scan reads to discard spanned repeats. discard region 1441:172 - contained in read 463480 0- 2163 discard region 1609:2799 - contained in read 492447 320- 9359 discard region 2750:9383 - contained in read 492448 329- 9384 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4349/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2295:6510 - contained in read 295407 203- 6515 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4350/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 6:5716 - contained in read 227683 0- 6226 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4366/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 3775:6919 - contained in read 471002 8- 6919 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4368/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4373/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 147:5722 - closest read 473351 ( +147) 0:5722 ( +0) (contained) saved region 147:5722 - closest 5' read 473351 ( +147) 0:5722 ( +0) saved region 147:5722 - closest 3' read 473351 ( +147) 0:5722 ( +0) search for confused edges: discard region 147:5722 - no confusion in best edges Annotating repeats in reads for tig 4376/90584. Annotated with 82 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8108 - closest 5' read 21227 ( +0) 0:6346 ( -1762) saved region 0:8108 - closest 3' read 30646 ( -3941) 3941:12592 ( +4484) search for confused edges: tig 4376 read 21227 pos 0-6346 NOT confused by 5' edge to read 520512 - best edge read 426858 len 3298 erate 0.0231 score 3221.82 - alt edge len 1134 erate 0.0335 score 1096.01 - absdiff 2125.81 percdiff 98.4664 tig 4376 read 21227 pos 0-6346 NOT confused by 5' edge to read 520513 - best edge read 426858 len 3298 erate 0.0231 score 3221.82 - alt edge len 1142 erate 0.0359 score 1101.00 - absdiff 2120.81 percdiff 98.1218 tig 4376 read 426858 pos 3016-7688 IS confused by 5' edge to read 21228 - best edge read 21227 len 3330 erate 0.0231 score 3253.08 - alt edge len 3237 erate 0.0257 score 3153.81 - absdiff 99.27 percdiff 3.0988 tig 4376 read 30646 pos 3941-12592 IS confused by 3' edge to read 21228 - best edge read 426858 len 3747 erate 0.0374 score 3606.86 - alt edge len 2343 erate 0.0321 score 2267.79 - absdiff 1339.07 percdiff 45.5881 tig 4376 read 30646 pos 3941-12592 IS confused by 3' edge to read 61174 - best edge read 426858 len 3747 erate 0.0374 score 3606.86 - alt edge len 2299 erate 0.0289 score 2232.56 - absdiff 1374.30 percdiff 47.0698 tig 4376 read 30646 pos 3941-12592 NOT confused by 3' edge to read 206268 - best edge read 426858 len 3747 erate 0.0374 score 3606.86 - alt edge len 538 erate 0.0393 score 516.86 - absdiff 3090.01 percdiff 149.8650 tig 4376 read 30646 pos 3941-12592 NOT confused by 3' edge to read 232620 - best edge read 426858 len 3747 erate 0.0374 score 3606.86 - alt edge len 670 erate 0.0301 score 649.83 - absdiff 2957.03 percdiff 138.9354 tig 4376 read 30646 pos 3941-12592 IS confused by 3' edge to read 355356 - best edge read 426858 len 3747 erate 0.0374 score 3606.86 - alt edge len 2773 erate 0.0271 score 2697.85 - absdiff 909.01 percdiff 28.8359 tig 4376 read 30646 pos 3941-12592 IS confused by 3' edge to read 362177 - best edge read 426858 len 3747 erate 0.0374 score 3606.86 - alt edge len 2178 erate 0.0355 score 2100.68 - absdiff 1506.18 percdiff 52.7786 tig 4376 read 30646 pos 3941-12592 IS confused by 3' edge to read 362178 - best edge read 426858 len 3747 erate 0.0374 score 3606.86 - alt edge len 2268 erate 0.0395 score 2178.41 - absdiff 1428.45 percdiff 49.3822 tig 4376 read 30646 pos 3941-12592 NOT confused by 3' edge to read 422993 - best edge read 426858 len 3747 erate 0.0374 score 3606.86 - alt edge len 669 erate 0.0389 score 642.98 - absdiff 2963.89 percdiff 139.4823 saved region 0:8108 - 6 best edges are potentially confused break tig 4376 into up to 2 pieces: 0 8608 repeat (length 8608) 8608 13187 unique (length 4579) Creating Unitig 91138 Creating Unitig 91139 For tig 4376 repeat region 0 8608 - 28/ 0 reads repeat/unique - unitig 91138 created. For tig 4376 unique region 8608 13187 - 0/ 5 reads repeat/unique - unitig 91139 created. Annotating repeats in reads for tig 4378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4379/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4405/90584. Annotated with 284 overlaps. Scan reads to discard spanned repeats. discard region 12218:13104 - contained in read 105041 7339- 13104 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4406/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 11336:14024 - contained in read 482805 7528- 14024 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4424/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 5615:6723 - contained in read 487555 138- 6723 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4428/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2386:6707 - contained in read 489189 124- 6707 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4435/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4956:6001 - contained in read 492394 0- 6001 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4438/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:2866 - contained in read 492667 0- 4006 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4448/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5136:10097 - closest read 368894 ( +0) 5136:15921 ( +5824) (contained) saved region 5136:10097 - closest 5' read 368894 ( +0) 5136:15921 ( +5824) saved region 5136:10097 - closest 3' read 368894 ( +0) 5136:15921 ( +5824) search for confused edges: discard region 5136:10097 - no confusion in best edges Annotating repeats in reads for tig 4451/90584. Annotated with 100 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3585:6826 - closest 5' read 508503 ( +1) 3584:6242 ( -584) saved region 3585:6826 - closest 3' read 213 ( -775) 4360:9453 ( +2627) search for confused edges: tig 4451 read 496129 pos 1189-6102 IS confused by 5' edge to read 59588 - best edge read 213 len 1742 erate 0.0323 score 1685.73 - alt edge len 530 erate 0.0286 score 514.84 - absdiff 1170.89 percdiff 106.4168 saved region 3585:6826 - 1 best edges are potentially confused break tig 4451 into up to 3 pieces: 0 3085 unique (length 3085) 3085 7326 repeat (length 4241) 7326 9995 unique (length 2669) Creating Unitig 91140 Creating Unitig 91141 Creating Unitig 91142 For tig 4451 unique region 0 3085 - 0/ 5 reads repeat/unique - unitig 91140 created. For tig 4451 repeat region 3085 7326 - 11/ 0 reads repeat/unique - unitig 91141 created. For tig 4451 unique region 7326 9995 - 0/ 6 reads repeat/unique - unitig 91142 created. Annotating repeats in reads for tig 4458/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14:7463 - closest read 329183 ( +14) 0:7477 ( +14) (contained) saved region 14:7463 - closest 5' read 329183 ( +14) 0:7477 ( +14) saved region 14:7463 - closest 3' read 329183 ( +14) 0:7477 ( +14) search for confused edges: discard region 14:7463 - no confusion in best edges Annotating repeats in reads for tig 4473/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4489/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4496/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6503 - closest read 417037 ( +0) 0:6530 ( +27) (contained) saved region 0:6503 - closest 5' read 417037 ( +0) 0:6530 ( +27) saved region 0:6503 - closest 3' read 417037 ( +0) 0:6530 ( +27) search for confused edges: discard region 0:6503 - no confusion in best edges Annotating repeats in reads for tig 4497/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3128:4121 - contained in read 256518 776- 4136 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4510/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5365:11381 - closest 5' read 184308 ( +47) 5318:8137 ( -3244) saved region 5365:11381 - closest 3' read 516783 ( -184) 5549:11975 ( +594) search for confused edges: discard region 5365:11381 - no confusion in best edges Annotating repeats in reads for tig 4515/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 0:2856 - contained in read 520544 0- 5805 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4530/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 1152:3738 - contained in read 525180 0- 7339 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4541/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4545/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4546/90584. Annotated with 78 overlaps. Scan reads to discard spanned repeats. discard region 8:3981 - contained in read 481033 0- 8647 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4547/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 6018:8603 - contained in read 420874 2001- 10798 thickest edges to the repeat regions: saved region 2:5823 - closest read 137256 ( +2) 0:6285 ( +462) (contained) saved region 2:5823 - closest 5' read 137256 ( +2) 0:6285 ( +462) saved region 2:5823 - closest 3' read 137256 ( +2) 0:6285 ( +462) search for confused edges: discard region 2:5823 - no confusion in best edges Annotating repeats in reads for tig 4548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4551/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4553/90584. Annotated with 747 overlaps. Scan reads to discard spanned repeats. discard region 2263:3556 - contained in read 1841 0- 6340 thickest edges to the repeat regions: saved region 3713:7180 - closest 5' read 360225 ( +2942) 771:7083 ( -97) saved region 3713:7180 - closest 3' read 496721 ( -126) 3839:9460 ( +2280) search for confused edges: tig 4553 read 360225 pos 771-7083 NOT confused by 3' edge to read 3569 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 738 erate 0.0367 score 710.92 - absdiff 2466.91 percdiff 126.8744 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 3570 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 1802 erate 0.0355 score 1738.03 - absdiff 1439.79 percdiff 58.5776 tig 4553 read 360225 pos 771-7083 NOT confused by 3' edge to read 6379 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 675 erate 0.0415 score 646.99 - absdiff 2530.83 percdiff 132.3378 tig 4553 read 360225 pos 771-7083 NOT confused by 3' edge to read 6381 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 691 erate 0.0391 score 663.98 - absdiff 2513.84 percdiff 130.8677 tig 4553 read 360225 pos 771-7083 NOT confused by 3' edge to read 6383 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 686 erate 0.0306 score 665.01 - absdiff 2512.81 percdiff 130.7793 tig 4553 read 360225 pos 771-7083 NOT confused by 3' edge to read 6384 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 599 erate 0.0334 score 578.99 - absdiff 2598.83 percdiff 138.3528 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 39013 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 1401 erate 0.0343 score 1352.95 - absdiff 1824.88 percdiff 80.5548 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 40844 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 2445 erate 0.0326 score 2365.29 - absdiff 812.53 percdiff 29.3167 tig 4553 read 360225 pos 771-7083 NOT confused by 3' edge to read 49058 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 903 erate 0.0288 score 876.99 - absdiff 2300.83 percdiff 113.4862 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 51512 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 3101 erate 0.0303 score 3007.04 - absdiff 170.78 percdiff 5.5226 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 54226 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 1333 erate 0.0263 score 1297.94 - absdiff 1879.88 percdiff 84.0026 tig 4553 read 360225 pos 771-7083 NOT confused by 3' edge to read 105041 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 874 erate 0.0441 score 835.46 - absdiff 2342.37 percdiff 116.7308 tig 4553 read 360225 pos 771-7083 NOT confused by 3' edge to read 186456 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 809 erate 0.0383 score 778.02 - absdiff 2399.81 percdiff 121.3299 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 210675 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 1499 erate 0.0334 score 1448.93 - absdiff 1728.89 percdiff 74.7344 tig 4553 read 360225 pos 771-7083 NOT confused by 3' edge to read 235970 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 778 erate 0.0321 score 753.03 - absdiff 2424.80 percdiff 123.3727 tig 4553 read 360225 pos 771-7083 NOT confused by 3' edge to read 235971 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 766 erate 0.0437 score 732.53 - absdiff 2445.30 percdiff 125.0680 tig 4553 read 360225 pos 771-7083 NOT confused by 3' edge to read 324264 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 802 erate 0.0362 score 772.97 - absdiff 2404.85 percdiff 121.7405 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 388906 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 2186 erate 0.0265 score 2128.07 - absdiff 1049.75 percdiff 39.5693 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 447880 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 2022 erate 0.0397 score 1941.73 - absdiff 1236.10 percdiff 48.2892 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 462736 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 2206 erate 0.0290 score 2142.03 - absdiff 1035.80 percdiff 38.9408 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 496243 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 2401 erate 0.0242 score 2342.90 - absdiff 834.93 percdiff 30.2470 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 496245 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 2418 erate 0.0290 score 2347.88 - absdiff 829.94 percdiff 30.0394 tig 4553 read 360225 pos 771-7083 IS confused by 3' edge to read 526537 - best edge read 496721 len 3244 erate 0.0204 score 3177.82 - alt edge len 2998 erate 0.0304 score 2906.86 - absdiff 270.96 percdiff 8.9064 saved region 3713:7180 - 12 best edges are potentially confused break tig 4553 into up to 3 pieces: 0 3213 unique (length 3213) 3213 7680 repeat (length 4467) 7680 9460 unique (length 1780) Creating Unitig 91143 Creating Unitig 91144 Creating Unitig 91145 For tig 4553 unique region 0 3213 - 0/ 6 reads repeat/unique - unitig 91143 created. For tig 4553 repeat region 3213 7680 - 9/ 0 reads repeat/unique - unitig 91145 created. For tig 4553 unique region 7680 9460 - 0/ 1 reads repeat/unique - unitig 91144 created. Annotating repeats in reads for tig 4554/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:1972 - contained in read 2118 0- 8973 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4556/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4563/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 0:5791 - contained in read 4983 0- 7398 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4564/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5324:5997 - closest read 5028 ( +5291) 33:6002 ( +5) (contained) saved region 5324:5997 - closest 5' read 5028 ( +5291) 33:6002 ( +5) saved region 5324:5997 - closest 3' read 5028 ( +5291) 33:6002 ( +5) search for confused edges: discard region 5324:5997 - no confusion in best edges Annotating repeats in reads for tig 4565/90584. Annotated with 76 overlaps. Scan reads to discard spanned repeats. discard region 777:3452 - contained in read 517250 0- 5960 thickest edges to the repeat regions: saved region 4555:11031 - closest 5' read 521078 ( +317) 4238:9641 ( -1390) saved region 4555:11031 - closest 3' read 5389 ( -2679) 7234:11303 ( +272) search for confused edges: tig 4565 read 87883 pos 7029-10449 IS confused by 5' edge to read 391778 - best edge read 521078 len 2612 erate 0.0143 score 2574.65 - alt edge len 2374 erate 0.0123 score 2344.80 - absdiff 229.85 percdiff 9.3445 tig 4565 read 87883 pos 7029-10449 IS confused by 5' edge to read 391779 - best edge read 521078 len 2612 erate 0.0143 score 2574.65 - alt edge len 2391 erate 0.0101 score 2366.85 - absdiff 207.80 percdiff 8.4103 tig 4565 read 87883 pos 7029-10449 IS confused by 5' edge to read 391780 - best edge read 521078 len 2612 erate 0.0143 score 2574.65 - alt edge len 2105 erate 0.0134 score 2076.79 - absdiff 497.86 percdiff 21.4065 tig 4565 read 5389 pos 7234-11303 IS confused by 3' edge to read 391778 - best edge read 87883 len 3215 erate 0.0215 score 3145.88 - alt edge len 2174 erate 0.0248 score 2120.08 - absdiff 1025.79 percdiff 38.9594 tig 4565 read 5389 pos 7234-11303 IS confused by 3' edge to read 391779 - best edge read 87883 len 3215 erate 0.0215 score 3145.88 - alt edge len 2189 erate 0.0224 score 2139.97 - absdiff 1005.91 percdiff 38.0606 tig 4565 read 5389 pos 7234-11303 IS confused by 3' edge to read 391780 - best edge read 87883 len 3215 erate 0.0215 score 3145.88 - alt edge len 1906 erate 0.0257 score 1857.02 - absdiff 1288.86 percdiff 51.5247 saved region 4555:11031 - 6 best edges are potentially confused break tig 4565 into up to 3 pieces: 0 4055 unique (length 4055) 4055 11531 repeat (length 7476) 11531 12310 unique (length 779) Creating Unitig 91146 Creating Unitig 91147 Creating Unitig 91148 For tig 4565 unique region 0 4055 - 0/ 9 reads repeat/unique - unitig 91146 created. For tig 4565 repeat region 4055 11531 - 10/ 0 reads repeat/unique - unitig 91147 created. For tig 4565 unique region 11531 12310 - 0/ 1 reads repeat/unique - unitig 91148 created. Annotating repeats in reads for tig 4567/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4664:2704 - contained in read 5441 0- 5842 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4578/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4580/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7572:9656 - closest read 373790 ( +891) 6681:9698 ( +42) (contained) saved region 7572:9656 - closest 5' read 373790 ( +891) 6681:9698 ( +42) saved region 7572:9656 - closest 3' read 373790 ( +891) 6681:9698 ( +42) search for confused edges: discard region 7572:9656 - no confusion in best edges Annotating repeats in reads for tig 4581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4584/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 10481:11008 - contained in read 422472 4630- 11640 thickest edges to the repeat regions: saved region 3136:6826 - closest read 8514 ( +3136) 0:7049 ( +223) (contained) saved region 3136:6826 - closest read 8513 ( +3129) 7:7111 ( +285) (contained) saved region 3136:6826 - closest read 8516 ( +3123) 13:7062 ( +236) (contained) saved region 3136:6826 - closest read 8512 ( +3121) 15:7096 ( +270) (contained) saved region 3136:6826 - closest read 8515 ( +3110) 26:7097 ( +271) (contained) saved region 3136:6826 - closest 5' read 8513 ( +3129) 7:7111 ( +285) saved region 3136:6826 - closest 3' read 8514 ( +3136) 0:7049 ( +223) search for confused edges: discard region 3136:6826 - no confusion in best edges Annotating repeats in reads for tig 4585/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5907:6522 - contained in read 65600 1156- 7546 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4586/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4587/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3856:7646 - closest 5' read 291772 ( +333) 3523:7355 ( -291) saved region 3856:7646 - closest 3' read 531537 ( -2314) 6170:7773 ( +127) search for confused edges: tig 4587 read 291772 pos 3523-7355 IS confused by 3' edge to read 307427 - best edge read 501876 len 2875 erate 0.0369 score 2768.91 - alt edge len 2864 erate 0.0358 score 2761.47 - absdiff 7.44 percdiff 0.2692 tig 4587 read 501876 pos 4499-7643 IS confused by 3' edge to read 240386 - best edge read 291772 len 2856 erate 0.0369 score 2750.61 - alt edge len 2481 erate 0.0404 score 2380.77 - absdiff 369.85 percdiff 14.4151 saved region 3856:7646 - 2 best edges are potentially confused break tig 4587 into up to 3 pieces: 0 3356 unique (length 3356) 3356 8146 repeat (length 4790) 8146 9241 unique (length 1095) Creating Unitig 91149 Creating Unitig 91150 Creating Unitig 91151 For tig 4587 unique region 0 3356 - 0/ 2 reads repeat/unique - unitig 91149 created. For tig 4587 repeat region 3356 8146 - 13/ 0 reads repeat/unique - unitig 91150 created. For tig 4587 unique region 8146 9241 - 0/ 3 reads repeat/unique - unitig 91151 created. Annotating repeats in reads for tig 4588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4589/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4591/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3477:1395 - contained in read 10466 0- 6230 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4596/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4599/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 2000:5095 - contained in read 195486 0- 6160 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4600/90584. Annotated with 83 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11122:13808 - closest 5' read 61827 (+10633) 489:12434 ( -1374) saved region 11122:13808 - closest 3' read 235656 ( -6) 11128:17986 ( +4178) search for confused edges: discard region 11122:13808 - no confusion in best edges Annotating repeats in reads for tig 4601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4607/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4608/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4610/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4614/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4619/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1715:6368 - contained in read 16431 0- 6965 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4622/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4624/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5014:2108 - contained in read 98750 0- 4505 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4625/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4626/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4627/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4628/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4632/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4633/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4640/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2:1107 - contained in read 45791 0- 5692 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4642/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 6219:7994 - contained in read 198511 3923- 13269 discard region 9138:12939 - contained in read 22175 4836- 14344 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4643/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4647/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2935:3872 - contained in read 23665 0- 6901 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4648/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4653/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4655/90584. Annotated with 124 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6517:12027 - closest 5' read 440069 ( +6501) 16:11941 ( -86) saved region 6517:12027 - closest 3' read 145701 ( -214) 6731:18166 ( +6139) saved region 12931:18171 - closest read 5377 ( +5279) 7652:18171 ( +0) (contained) saved region 12931:18171 - closest 5' read 5377 ( +5279) 7652:18171 ( +0) saved region 12931:18171 - closest 3' read 5377 ( +5279) 7652:18171 ( +0) search for confused edges: tig 4655 read 206058 pos 13905-19840 IS confused by 5' edge to read 8761 - best edge read 145701 len 4244 erate 0.0099 score 4201.98 - alt edge len 2897 erate 0.0142 score 2855.86 - absdiff 1346.12 percdiff 38.1454 tig 4655 read 206058 pos 13905-19840 IS confused by 5' edge to read 8762 - best edge read 145701 len 4244 erate 0.0099 score 4201.98 - alt edge len 2882 erate 0.0156 score 2837.04 - absdiff 1364.94 percdiff 38.7822 tig 4655 read 206058 pos 13905-19840 IS confused by 5' edge to read 8763 - best edge read 145701 len 4244 erate 0.0099 score 4201.98 - alt edge len 2898 erate 0.0110 score 2866.12 - absdiff 1335.86 percdiff 37.7997 tig 4655 read 206058 pos 13905-19840 IS confused by 5' edge to read 163943 - best edge read 145701 len 4244 erate 0.0099 score 4201.98 - alt edge len 4229 erate 0.0171 score 4156.68 - absdiff 45.30 percdiff 1.0839 tig 4655 read 206058 pos 13905-19840 NOT confused by 5' edge to read 178414 - best edge read 145701 len 4244 erate 0.0099 score 4201.98 - alt edge len 1544 erate 0.0233 score 1508.02 - absdiff 2693.96 percdiff 94.3592 tig 4655 read 206058 pos 13905-19840 IS confused by 5' edge to read 324737 - best edge read 145701 len 4244 erate 0.0099 score 4201.98 - alt edge len 3809 erate 0.0097 score 3772.05 - absdiff 429.93 percdiff 10.7833 tig 4655 read 206058 pos 13905-19840 IS confused by 5' edge to read 324738 - best edge read 145701 len 4244 erate 0.0099 score 4201.98 - alt edge len 3860 erate 0.0135 score 3807.89 - absdiff 394.09 percdiff 9.8402 discard region 6517:12027 - no confusion in best edges saved region 12931:18171 - 6 best edges are potentially confused break tig 4655 into up to 3 pieces: 0 12431 unique (length 12431) 12431 18671 repeat (length 6240) 18671 21354 unique (length 2683) Creating Unitig 91152 Creating Unitig 91153 Creating Unitig 91154 For tig 4655 unique region 0 12431 - 0/ 40 reads repeat/unique - unitig 91152 created. For tig 4655 repeat region 12431 18671 - 17/ 0 reads repeat/unique - unitig 91153 created. For tig 4655 unique region 18671 21354 - 0/ 3 reads repeat/unique - unitig 91154 created. Annotating repeats in reads for tig 4656/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 918:2218 - contained in read 24721 0- 5801 discard region 5541:6880 - contained in read 137127 4547- 10852 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4658/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 5745:9311 - contained in read 226689 3939- 9498 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4659/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4662/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9475:13564 - closest 5' read 235991 ( +5453) 4022:10479 ( -3085) saved region 9475:13564 - closest 3' read 217842 ( -58) 9533:17000 ( +3436) search for confused edges: discard region 9475:13564 - no confusion in best edges Annotating repeats in reads for tig 4663/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4668/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5582:6932 - closest 5' read 26956 ( +5565) 17:6921 ( -11) saved region 5582:6932 - closest 3' read 524314 ( -459) 6041:12195 ( +5263) search for confused edges: tig 4668 read 26956 pos 17-6921 IS confused by 5' edge to read 359956 - best edge read 524314 len 880 erate 0.0287 score 854.74 - alt edge len 591 erate 0.0271 score 574.98 - absdiff 279.76 percdiff 39.1347 saved region 5582:6932 - 1 best edges are potentially confused break tig 4668 into up to 3 pieces: 0 5082 unique (length 5082) 5082 7432 repeat (length 2350) 7432 13678 unique (length 6246) Creating Unitig 91155 Creating Unitig 91156 Creating Unitig 91157 For tig 4668 unique region 0 5082 - 0/ 3 reads repeat/unique - unitig 91155 created. For tig 4668 repeat region 5082 7432 - 2/ 0 reads repeat/unique - unitig 91156 created. For tig 4668 unique region 7432 13678 - 0/ 10 reads repeat/unique - unitig 91157 created. Annotating repeats in reads for tig 4669/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4674/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4681/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 1016:7338 - contained in read 28876 0- 11112 discard region 7718:10592 - contained in read 28876 0- 11112 discard region 11830:15521 - contained in read 235271 7341- 16999 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4682/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7267:9994 - closest 5' read 429235 ( +4677) 2590:9967 ( -27) saved region 7267:9994 - closest 3' read 375787 ( -6) 7273:13577 ( +3583) search for confused edges: discard region 7267:9994 - no confusion in best edges Annotating repeats in reads for tig 4683/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4684/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4685/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3713:5562 - closest 5' read 414079 ( +3394) 319:5350 ( -212) saved region 3713:5562 - closest 3' read 475123 ( -710) 4423:10259 ( +4697) search for confused edges: tig 4685 read 475123 pos 4423-10259 IS confused by 5' edge to read 6909 - best edge read 300059 len 899 erate 0.0344 score 868.07 - alt edge len 584 erate 0.0240 score 569.98 - absdiff 298.09 percdiff 41.4573 saved region 3713:5562 - 1 best edges are potentially confused break tig 4685 into up to 3 pieces: 0 3213 unique (length 3213) 3213 6062 repeat (length 2849) 6062 10259 unique (length 4197) Creating Unitig 91158 Creating Unitig 91159 Creating Unitig 91160 For tig 4685 unique region 0 3213 - 0/ 11 reads repeat/unique - unitig 91158 created. For tig 4685 repeat region 3213 6062 - 3/ 0 reads repeat/unique - unitig 91159 created. For tig 4685 unique region 6062 10259 - 0/ 4 reads repeat/unique - unitig 91160 created. Annotating repeats in reads for tig 4686/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 17391:19310 - contained in read 349995 12819- 19310 thickest edges to the repeat regions: saved region 4918:9062 - closest 5' read 479692 ( +3158) 1760:8407 ( -655) saved region 4918:9062 - closest 3' read 140443 ( -1610) 6528:13382 ( +4320) search for confused edges: discard region 4918:9062 - no confusion in best edges Annotating repeats in reads for tig 4687/90584. Annotated with 432 overlaps. Scan reads to discard spanned repeats. discard region 3474:7597 - contained in read 349514 20- 10894 thickest edges to the repeat regions: saved region 10433:17682 - closest 5' read 462308 ( +5819) 4614:15454 ( -2228) saved region 10433:17682 - closest 3' read 261237 ( -1464) 11897:17682 ( +0) search for confused edges: tig 4687 read 261237 pos 11897-17682 NOT confused by 3' edge to read 53069 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 951 erate 0.0349 score 917.81 - absdiff 2505.55 percdiff 115.4320 tig 4687 read 261237 pos 11897-17682 NOT confused by 3' edge to read 53070 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 1086 erate 0.0333 score 1049.84 - absdiff 2373.52 percdiff 106.1221 tig 4687 read 261237 pos 11897-17682 IS confused by 3' edge to read 83970 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 1474 erate 0.0312 score 1428.01 - absdiff 1995.35 percdiff 82.2592 tig 4687 read 261237 pos 11897-17682 IS confused by 3' edge to read 83971 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 1473 erate 0.0374 score 1417.91 - absdiff 2005.45 percdiff 82.8481 tig 4687 read 261237 pos 11897-17682 IS confused by 3' edge to read 95724 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 2899 erate 0.0383 score 2787.97 - absdiff 635.39 percdiff 20.4591 tig 4687 read 261237 pos 11897-17682 IS confused by 3' edge to read 288312 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 3412 erate 0.0340 score 3295.99 - absdiff 127.37 percdiff 3.7911 tig 4687 read 261237 pos 11897-17682 NOT confused by 3' edge to read 298404 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 620 erate 0.0306 score 601.03 - absdiff 2822.33 percdiff 140.2614 tig 4687 read 261237 pos 11897-17682 NOT confused by 3' edge to read 298406 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 989 erate 0.0303 score 959.03 - absdiff 2464.33 percdiff 112.4649 tig 4687 read 261237 pos 11897-17682 NOT confused by 3' edge to read 326003 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 1281 erate 0.0362 score 1234.63 - absdiff 2188.73 percdiff 93.9776 tig 4687 read 261237 pos 11897-17682 IS confused by 3' edge to read 340472 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 3187 erate 0.0385 score 3064.30 - absdiff 359.06 percdiff 11.0690 tig 4687 read 261237 pos 11897-17682 NOT confused by 3' edge to read 343460 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 823 erate 0.0413 score 789.01 - absdiff 2634.35 percdiff 125.0768 tig 4687 read 261237 pos 11897-17682 IS confused by 3' edge to read 370295 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 3201 erate 0.0346 score 3090.25 - absdiff 333.11 percdiff 10.2283 tig 4687 read 261237 pos 11897-17682 NOT confused by 3' edge to read 382479 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 991 erate 0.0373 score 954.04 - absdiff 2469.32 percdiff 112.8216 tig 4687 read 261237 pos 11897-17682 IS confused by 3' edge to read 409917 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 2421 erate 0.0349 score 2336.51 - absdiff 1086.85 percdiff 37.7388 tig 4687 read 261237 pos 11897-17682 IS confused by 3' edge to read 424802 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 2706 erate 0.0362 score 2608.04 - absdiff 815.32 percdiff 27.0357 tig 4687 read 261237 pos 11897-17682 IS confused by 3' edge to read 445355 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 2662 erate 0.0344 score 2570.43 - absdiff 852.93 percdiff 28.4606 tig 4687 read 261237 pos 11897-17682 NOT confused by 3' edge to read 469691 - best edge read 462308 len 3566 erate 0.0400 score 3423.36 - alt edge len 1010 erate 0.0379 score 971.72 - absdiff 2451.64 percdiff 111.5629 saved region 10433:17682 - 9 best edges are potentially confused break tig 4687 into up to 2 pieces: 0 9933 unique (length 9933) 9933 17682 repeat (length 7749) Creating Unitig 91161 Creating Unitig 91162 For tig 4687 unique region 0 9933 - 0/ 20 reads repeat/unique - unitig 91161 created. For tig 4687 repeat region 9933 17682 - 6/ 0 reads repeat/unique - unitig 91162 created. Annotating repeats in reads for tig 4688/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4690/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4692/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:1791 - contained in read 32491 0- 8432 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4693/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4695/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4696/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4698/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 830:5343 - closest 5' read 365471 ( +109) 721:5335 ( -8) saved region 830:5343 - closest 3' read 488325 ( -11) 841:7469 ( +2126) search for confused edges: tig 4698 read 365471 pos 721-5335 NOT confused by 5' edge to read 19105 - best edge read 488325 len 4489 erate 0.0049 score 4467.00 - alt edge len 1184 erate 0.0153 score 1165.88 - absdiff 3301.12 percdiff 117.2087 tig 4698 read 365471 pos 721-5335 IS confused by 5' edge to read 49581 - best edge read 488325 len 4489 erate 0.0049 score 4467.00 - alt edge len 2559 erate 0.0074 score 2540.06 - absdiff 1926.94 percdiff 54.9999 tig 4698 read 365471 pos 721-5335 IS confused by 5' edge to read 300805 - best edge read 488325 len 4489 erate 0.0049 score 4467.00 - alt edge len 3234 erate 0.0133 score 3190.99 - absdiff 1276.02 percdiff 33.3251 tig 4698 read 365471 pos 721-5335 IS confused by 5' edge to read 462604 - best edge read 488325 len 4489 erate 0.0049 score 4467.00 - alt edge len 4481 erate 0.0067 score 4450.98 - absdiff 16.03 percdiff 0.3594 tig 4698 read 365471 pos 721-5335 IS confused by 5' edge to read 462607 - best edge read 488325 len 4489 erate 0.0049 score 4467.00 - alt edge len 4482 erate 0.0089 score 4442.11 - absdiff 24.89 percdiff 0.5588 tig 4698 read 365471 pos 721-5335 NOT confused by 5' edge to read 469137 - best edge read 488325 len 4489 erate 0.0049 score 4467.00 - alt edge len 807 erate 0.0087 score 799.98 - absdiff 3667.02 percdiff 139.2457 tig 4698 read 488325 pos 841-7469 NOT confused by 5' edge to read 66230 - best edge read 365471 len 4494 erate 0.0049 score 4471.98 - alt edge len 2310 erate 0.0165 score 2271.89 - absdiff 2200.09 percdiff 65.2473 tig 4698 read 488325 pos 841-7469 NOT confused by 5' edge to read 66231 - best edge read 365471 len 4494 erate 0.0049 score 4471.98 - alt edge len 2327 erate 0.0108 score 2301.87 - absdiff 2170.11 percdiff 64.0732 tig 4698 read 488325 pos 841-7469 IS confused by 5' edge to read 66232 - best edge read 365471 len 4494 erate 0.0049 score 4471.98 - alt edge len 2473 erate 0.0194 score 2425.02 - absdiff 2046.96 percdiff 59.3578 tig 4698 read 488325 pos 841-7469 IS confused by 5' edge to read 111714 - best edge read 365471 len 4494 erate 0.0049 score 4471.98 - alt edge len 3949 erate 0.0033 score 3935.97 - absdiff 536.01 percdiff 12.7501 tig 4698 read 488325 pos 841-7469 IS confused by 5' edge to read 216975 - best edge read 365471 len 4494 erate 0.0049 score 4471.98 - alt edge len 4486 erate 0.0025 score 4474.78 - absdiff 2.81 percdiff 0.0627 tig 4698 read 488325 pos 841-7469 IS confused by 5' edge to read 216977 - best edge read 365471 len 4494 erate 0.0049 score 4471.98 - alt edge len 4492 erate 0.0031 score 4478.07 - absdiff 6.10 percdiff 0.1362 tig 4698 read 488325 pos 841-7469 IS confused by 5' edge to read 478777 - best edge read 365471 len 4494 erate 0.0049 score 4471.98 - alt edge len 3810 erate 0.0045 score 3792.86 - absdiff 679.12 percdiff 16.4341 saved region 830:5343 - 9 best edges are potentially confused break tig 4698 into up to 3 pieces: 0 330 unique (length 330) 330 5843 repeat (length 5513) 5843 8214 unique (length 2371) Creating Unitig 91163 Creating Unitig 91164 Creating Unitig 91165 For tig 4698 unique region 0 330 - 0/ 2 reads repeat/unique - unitig 91163 created. For tig 4698 repeat region 330 5843 - 16/ 0 reads repeat/unique - unitig 91164 created. For tig 4698 unique region 5843 8214 - 0/ 9 reads repeat/unique - unitig 91165 created. Annotating repeats in reads for tig 4700/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4701/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4703/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4706/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2335:7761 - closest read 178215 ( +2335) 0:7910 ( +149) (contained) saved region 2335:7761 - closest read 178213 ( +2332) 3:7913 ( +152) (contained) saved region 2335:7761 - closest 5' read 178213 ( +2332) 3:7913 ( +152) saved region 2335:7761 - closest 3' read 178215 ( +2335) 0:7910 ( +149) search for confused edges: discard region 2335:7761 - no confusion in best edges Annotating repeats in reads for tig 4707/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4712/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4714/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4718/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1352:0 - contained in read 79943 0- 6599 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4720/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 4923:4227 - contained in read 352739 0- 6393 discard region 4951:5583 - contained in read 352739 0- 6393 discard region 5837:10774 - contained in read 28168 4227- 16516 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4721/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 8312:8935 - contained in read 517229 6755- 13420 thickest edges to the repeat regions: saved region 2788:4345 - closest read 37008 ( +2788) 0:4828 ( +483) (contained) saved region 2788:4345 - closest read 37006 ( +2788) 0:4759 ( +414) (contained) saved region 2788:4345 - closest read 37004 ( +2778) 10:4803 ( +458) (contained) saved region 2788:4345 - closest read 37007 ( +2761) 27:4822 ( +477) (contained) saved region 2788:4345 - closest read 81200 ( +0) 2788:8069 ( +3724) (contained) saved region 2788:4345 - closest 5' read 81200 ( +0) 2788:8069 ( +3724) saved region 2788:4345 - closest 3' read 37008 ( +2788) 0:4828 ( +483) search for confused edges: discard region 2788:4345 - no confusion in best edges Annotating repeats in reads for tig 4722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4723/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4726/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4728/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4730/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1042:2299 - closest 5' read 344129 ( +1042) 0:2289 ( -10) saved region 1042:2299 - closest 3' read 514041 ( -2) 1044:5998 ( +3699) search for confused edges: discard region 1042:2299 - no confusion in best edges Annotating repeats in reads for tig 4731/90584. Annotated with 1496 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5712:13087 - closest 5' read 503379 ( +5) 5707:10420 ( -2667) saved region 5712:13087 - closest 3' read 241633 ( -40) 5752:13089 ( +2) search for confused edges: tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 769 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 1422 erate 0.0316 score 1377.06 - absdiff 13.84 percdiff 1.0004 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 1841 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 694 erate 0.0353 score 669.50 - absdiff 721.41 percdiff 70.0256 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 1842 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 724 erate 0.0367 score 697.43 - absdiff 693.48 percdiff 66.4145 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 210830 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 1422 erate 0.0292 score 1380.48 - absdiff 10.43 percdiff 0.7528 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 221203 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 1419 erate 0.0269 score 1380.83 - absdiff 10.08 percdiff 0.7274 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 221205 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 1428 erate 0.0261 score 1390.73 - absdiff 0.18 percdiff 0.0130 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 281973 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 1421 erate 0.0296 score 1378.94 - absdiff 11.97 percdiff 0.8644 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 313640 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 1419 erate 0.0191 score 1391.90 - absdiff 0.99 percdiff 0.0710 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 313641 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 1416 erate 0.0235 score 1382.72 - absdiff 8.19 percdiff 0.5902 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 314476 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 1420 erate 0.0387 score 1365.05 - absdiff 25.86 percdiff 1.8769 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 360225 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 1419 erate 0.0343 score 1370.33 - absdiff 20.58 percdiff 1.4907 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 442798 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 1027 erate 0.0356 score 990.44 - absdiff 400.47 percdiff 33.6340 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 488639 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 793 erate 0.0331 score 766.75 - absdiff 624.16 percdiff 57.8550 tig 4731 read 39013 pos 2-7188 IS confused by 5' edge to read 529937 - best edge read 241633 len 1436 erate 0.0314 score 1390.91 - alt edge len 1417 erate 0.0213 score 1386.82 - absdiff 4.09 percdiff 0.2946 saved region 5712:13087 - 14 best edges are potentially confused break tig 4731 into up to 2 pieces: 0 5212 unique (length 5212) 5212 13089 repeat (length 7877) Creating Unitig 91166 Creating Unitig 91167 For tig 4731 unique region 0 5212 - 0/ 2 reads repeat/unique - unitig 91166 created. For tig 4731 repeat region 5212 13089 - 54/ 0 reads repeat/unique - unitig 91167 created. Annotating repeats in reads for tig 4733/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4734/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4735/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1637:5661 - closest read 324423 ( +714) 923:5665 ( +4) (contained) saved region 1637:5661 - closest 5' read 324423 ( +714) 923:5665 ( +4) saved region 1637:5661 - closest 3' read 324423 ( +714) 923:5665 ( +4) search for confused edges: discard region 1637:5661 - no confusion in best edges Annotating repeats in reads for tig 4737/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4738/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4739/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4742/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6049:11795 - closest 5' read 275771 ( +999) 5050:11492 ( -303) saved region 6049:11795 - closest 3' read 143133 ( -300) 6349:11973 ( +178) search for confused edges: discard region 6049:11795 - no confusion in best edges Annotating repeats in reads for tig 4744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4755/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10649:3254 - contained in read 44617 0- 4585 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4757/90584. Annotated with 355 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:10648 - closest 5' read 344987 ( +0) 0:7865 ( -2783) saved region 0:10648 - closest 3' read 27371 ( -4429) 4429:10875 ( +227) search for confused edges: tig 4757 read 344987 pos 0-7865 IS confused by 5' edge to read 43665 - best edge read 293154 len 3575 erate 0.0282 score 3474.18 - alt edge len 1541 erate 0.0403 score 1478.90 - absdiff 1995.29 percdiff 80.5675 tig 4757 read 293154 pos 4316-10625 IS confused by 3' edge to read 43647 - best edge read 344987 len 3549 erate 0.0282 score 3448.92 - alt edge len 3128 erate 0.0323 score 3026.97 - absdiff 421.95 percdiff 13.0315 tig 4757 read 293154 pos 4316-10625 NOT confused by 5' edge to read 207864 - best edge read 27371 len 6221 erate 0.0353 score 6001.40 - alt edge len 1304 erate 0.0301 score 1264.75 - absdiff 4736.65 percdiff 130.3758 tig 4757 read 293154 pos 4316-10625 IS confused by 3' edge to read 209437 - best edge read 344987 len 3549 erate 0.0282 score 3448.92 - alt edge len 2096 erate 0.0406 score 2010.90 - absdiff 1438.02 percdiff 52.6763 tig 4757 read 27371 pos 4429-10875 NOT confused by 3' edge to read 43647 - best edge read 293154 len 6196 erate 0.0353 score 5977.28 - alt edge len 1274 erate 0.0393 score 1223.93 - absdiff 4753.35 percdiff 132.0152 saved region 0:10648 - 3 best edges are potentially confused break tig 4757 into up to 2 pieces: 0 11148 repeat (length 11148) 11148 11420 unique (length 272) Creating Unitig 91168 Creating Unitig 91169 For tig 4757 repeat region 0 11148 - 42/ 0 reads repeat/unique - unitig 91168 created. For tig 4757 unique region 11148 11420 - 0/ 1 reads repeat/unique - unitig 91169 created. Annotating repeats in reads for tig 4760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4764/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5752:8649 - contained in read 292511 550- 10094 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4767/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7498:6648 - contained in read 14359 66- 7353 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4768/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4769/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3497:0 - contained in read 366820 0- 7966 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4772/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 3589:6891 - contained in read 48411 272- 6891 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4773/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4758:5935 - closest read 353898 ( +4429) 329:5963 ( +28) (contained) saved region 4758:5935 - closest read 353902 ( +4405) 353:5957 ( +22) (contained) saved region 4758:5935 - closest read 353899 ( +4391) 367:5949 ( +14) (contained) saved region 4758:5935 - closest read 353900 ( +4210) 548:5941 ( +6) (contained) saved region 4758:5935 - closest read 353901 ( +4106) 652:5947 ( +12) (contained) saved region 4758:5935 - closest 5' read 353898 ( +4429) 329:5963 ( +28) saved region 4758:5935 - closest 3' read 353898 ( +4429) 329:5963 ( +28) search for confused edges: discard region 4758:5935 - no confusion in best edges Annotating repeats in reads for tig 4774/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4777/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2665:2113 - contained in read 137766 0- 5572 discard region 5659:4915 - contained in read 137766 0- 5572 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4779/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4782/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4784/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8099:16088 - closest 5' read 491094 ( +5173) 2926:11974 ( -4114) saved region 8099:16088 - closest 3' read 126881 ( -2763) 10862:16089 ( +1) search for confused edges: tig 4784 read 135500 pos 10828-16085 IS confused by 5' edge to read 140302 - best edge read 51568 len 4356 erate 0.0185 score 4275.41 - alt edge len 2491 erate 0.0259 score 2426.48 - absdiff 1848.93 percdiff 55.1763 saved region 8099:16088 - 1 best edges are potentially confused break tig 4784 into up to 3 pieces: 0 7599 unique (length 7599) 7599 16588 repeat (length 8989) 16588 19637 unique (length 3049) Creating Unitig 91170 Creating Unitig 91171 Creating Unitig 91172 For tig 4784 unique region 0 7599 - 0/ 3 reads repeat/unique - unitig 91170 created. For tig 4784 repeat region 7599 16588 - 9/ 0 reads repeat/unique - unitig 91171 created. For tig 4784 unique region 16588 19637 - 0/ 4 reads repeat/unique - unitig 91172 created. Annotating repeats in reads for tig 4785/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4786/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4784:8642 - closest 5' read 52380 ( +4755) 29:7063 ( -1579) saved region 4784:8642 - closest 3' read 283138 ( -13) 4797:8667 ( +25) saved region 14442:17013 - closest read 439485 ( +8401) 6041:17036 ( +23) (contained) saved region 14442:17013 - closest read 439486 ( +8400) 6042:17025 ( +12) (contained) saved region 14442:17013 - closest read 439484 ( +8396) 6046:17020 ( +7) (contained) saved region 14442:17013 - closest read 472353 ( +31) 14411:19730 ( +2717) (contained) saved region 14442:17013 - closest 5' read 472353 ( +31) 14411:19730 ( +2717) saved region 14442:17013 - closest 3' read 439485 ( +8401) 6041:17036 ( +23) search for confused edges: discard region 4784:8642 - no confusion in best edges discard region 14442:17013 - no confusion in best edges Annotating repeats in reads for tig 4788/90584. Annotated with 1437 overlaps. Scan reads to discard spanned repeats. discard region 1376:3981 - contained in read 180688 829- 7359 thickest edges to the repeat regions: saved region 5382:11180 - closest 5' read 180687 ( +4551) 831:7385 ( -3795) saved region 5382:11180 - closest 3' read 183685 ( -822) 6204:13628 ( +2448) search for confused edges: tig 4788 read 180690 pos 832-7365 IS confused by 3' edge to read 26388 - best edge read 183687 len 1160 erate 0.0216 score 1134.94 - alt edge len 710 erate 0.0296 score 688.98 - absdiff 445.96 percdiff 48.9011 tig 4788 read 180690 pos 832-7365 IS confused by 3' edge to read 229593 - best edge read 183687 len 1160 erate 0.0216 score 1134.94 - alt edge len 980 erate 0.0368 score 943.94 - absdiff 191.01 percdiff 18.3760 saved region 5382:11180 - 2 best edges are potentially confused break tig 4788 into up to 3 pieces: 0 4882 unique (length 4882) 4882 11680 repeat (length 6798) 11680 13691 unique (length 2011) Creating Unitig 91173 Creating Unitig 91174 Creating Unitig 91175 For tig 4788 unique region 0 4882 - 0/ 16 reads repeat/unique - unitig 91173 created. For tig 4788 repeat region 4882 11680 - 60/ 0 reads repeat/unique - unitig 91174 created. For tig 4788 unique region 11680 13691 - 0/ 5 reads repeat/unique - unitig 91175 created. Annotating repeats in reads for tig 4789/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6512:10503 - closest read 158184 ( +10) 6502:13942 ( +3439) (contained) saved region 6512:10503 - closest 5' read 158184 ( +10) 6502:13942 ( +3439) saved region 6512:10503 - closest 3' read 158184 ( +10) 6502:13942 ( +3439) search for confused edges: discard region 6512:10503 - no confusion in best edges Annotating repeats in reads for tig 4790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4791/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4795/90584. Annotated with 77 overlaps. Scan reads to discard spanned repeats. discard region 3185:5150 - contained in read 54190 0- 7610 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4796/90584. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 4704:6047 - contained in read 54226 12- 6047 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4798/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4799/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4804/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4805/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 156:5295 - closest 5' read 450648 ( +34) 122:5262 ( -33) saved region 156:5295 - closest 3' read 55664 ( -2428) 2584:9432 ( +4137) search for confused edges: tig 4805 read 422417 pos 198-5273 IS confused by 5' edge to read 345537 - best edge read 55664 len 2710 erate 0.0190 score 2658.51 - alt edge len 2204 erate 0.0274 score 2143.61 - absdiff 514.90 percdiff 21.4447 saved region 156:5295 - 1 best edges are potentially confused break tig 4805 into up to 2 pieces: 0 5795 repeat (length 5795) 5795 10032 unique (length 4237) Creating Unitig 91176 Creating Unitig 91177 For tig 4805 repeat region 0 5795 - 19/ 0 reads repeat/unique - unitig 91176 created. For tig 4805 unique region 5795 10032 - 0/ 4 reads repeat/unique - unitig 91177 created. Annotating repeats in reads for tig 4806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4808/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4811/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4817/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4818/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4820/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 619:2871 - contained in read 58287 0- 4019 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4821/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4825/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5687:9171 - contained in read 59086 0- 9915 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4826/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6235:6767 - closest read 59281 ( +6235) 0:6789 ( +22) (contained) saved region 6235:6767 - closest read 59279 ( +6235) 0:6772 ( +5) (contained) saved region 6235:6767 - closest read 19091 ( +6233) 2:6798 ( +31) (contained) saved region 6235:6767 - closest read 59282 ( +6174) 61:6798 ( +31) (contained) saved region 6235:6767 - closest read 59280 ( +6151) 84:6803 ( +36) (contained) saved region 6235:6767 - closest 5' read 59280 ( +6151) 84:6803 ( +36) saved region 6235:6767 - closest 3' read 59281 ( +6235) 0:6789 ( +22) search for confused edges: discard region 6235:6767 - no confusion in best edges Annotating repeats in reads for tig 4827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4829/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8133:6849 - contained in read 105475 4312- 8437 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4835/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7659:4414 - contained in read 61647 0- 6053 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4836/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:3911 - contained in read 297558 0- 4549 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4837/90584. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 4511:7020 - contained in read 44394 1421- 7804 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4841/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 3:4665 - contained in read 62417 0- 6358 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4845/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3944:3389 - contained in read 62912 0- 5907 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4846/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4847/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4848/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4850/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4851/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4853/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4854/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3976:6508 - contained in read 342866 1296- 8824 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4855/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 9838:10981 - contained in read 245183 4073- 11583 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4859/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4860/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4861/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4394:7042 - contained in read 152296 130- 7049 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4865/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 5408:8089 - contained in read 69375 2805- 10983 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4866/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5307:6235 - closest read 380107 ( +0) 5307:14499 ( +8264) (contained) saved region 5307:6235 - closest 5' read 380107 ( +0) 5307:14499 ( +8264) saved region 5307:6235 - closest 3' read 380107 ( +0) 5307:14499 ( +8264) search for confused edges: discard region 5307:6235 - no confusion in best edges Annotating repeats in reads for tig 4868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4870/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4871/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4874/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3998:5405 - contained in read 71072 0- 10042 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4875/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4876/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4877/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4884/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4885/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4886/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4889/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4171:2084 - contained in read 42891 0- 4431 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4890/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4891/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3368:7214 - contained in read 381099 0- 8453 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4896/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4899/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4900/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4902/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6126:5618 - contained in read 76997 27- 6138 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4903/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4904/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5466:8333 - contained in read 262210 4554- 13061 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4908/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6321:7484 - contained in read 162118 3987- 11352 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4909/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 1242:3799 - contained in read 453131 0- 6461 thickest edges to the repeat regions: saved region 5400:7793 - closest read 406521 ( +4188) 1212:7862 ( +69) (contained) saved region 5400:7793 - closest read 19471 ( +4170) 1230:7850 ( +57) (contained) saved region 5400:7793 - closest read 413400 ( +4134) 1266:7867 ( +74) (contained) saved region 5400:7793 - closest read 413401 ( +4132) 1268:7837 ( +44) (contained) saved region 5400:7793 - closest read 311045 ( +3696) 1704:7873 ( +80) (contained) saved region 5400:7793 - closest read 251984 ( +3143) 2257:7856 ( +63) (contained) saved region 5400:7793 - closest read 230269 ( +3063) 2337:7834 ( +41) (contained) saved region 5400:7793 - closest read 230271 ( +3058) 2342:7824 ( +31) (contained) saved region 5400:7793 - closest read 467123 ( +2837) 2563:7872 ( +79) (contained) saved region 5400:7793 - closest read 362991 ( +1070) 4330:7854 ( +61) (contained) saved region 5400:7793 - closest read 412045 ( +660) 4740:7831 ( +38) (contained) saved region 5400:7793 - closest read 461898 ( +379) 5021:7858 ( +65) (contained) saved region 5400:7793 - closest read 518957 ( +97) 5303:7849 ( +56) (contained) saved region 5400:7793 - closest 5' read 311045 ( +3696) 1704:7873 ( +80) saved region 5400:7793 - closest 3' read 406521 ( +4188) 1212:7862 ( +69) search for confused edges: discard region 5400:7793 - no confusion in best edges Annotating repeats in reads for tig 4910/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4912/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4913/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3162:5625 - contained in read 528289 0- 8065 discard region 7369:6468 - contained in read 528289 0- 8065 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4914/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4915/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4916/90584. Annotated with 48 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3298:8458 - closest 5' read 439360 ( +159) 3139:8430 ( -28) saved region 3298:8458 - closest 3' read 13827 ( -12) 3310:9219 ( +761) search for confused edges: tig 4916 read 13827 pos 3310-9219 IS confused by 5' edge to read 371360 - best edge read 439360 len 5120 erate 0.0157 score 5039.62 - alt edge len 4463 erate 0.0224 score 4363.03 - absdiff 676.59 percdiff 14.3914 tig 4916 read 13827 pos 3310-9219 IS confused by 5' edge to read 371362 - best edge read 439360 len 5120 erate 0.0157 score 5039.62 - alt edge len 4472 erate 0.0106 score 4424.60 - absdiff 615.02 percdiff 12.9967 saved region 3298:8458 - 2 best edges are potentially confused break tig 4916 into up to 3 pieces: 0 2798 unique (length 2798) 2798 8958 repeat (length 6160) 8958 13940 unique (length 4982) Creating Unitig 91178 Creating Unitig 91179 Creating Unitig 91180 For tig 4916 unique region 0 2798 - 0/ 3 reads repeat/unique - unitig 91178 created. For tig 4916 repeat region 2798 8958 - 24/ 0 reads repeat/unique - unitig 91179 created. For tig 4916 unique region 8958 13940 - 0/ 7 reads repeat/unique - unitig 91180 created. Annotating repeats in reads for tig 4919/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4920/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4921/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 342:7530 - closest 5' read 134886 ( +0) 342:6392 ( -1138) saved region 342:7530 - closest 3' read 282727 ( -1193) 1535:8199 ( +669) search for confused edges: discard region 342:7530 - no confusion in best edges Annotating repeats in reads for tig 4922/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4923/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1056:6829 - closest 5' read 262184 ( +4) 1052:6827 ( -2) saved region 1056:6829 - closest 3' read 327423 ( -4796) 5852:10926 ( +4097) search for confused edges: discard region 1056:6829 - no confusion in best edges Annotating repeats in reads for tig 4924/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4925/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4927/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4929/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4931/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4934/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4936/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4939/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4940/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6775:12186 - closest 5' read 131383 ( +1175) 5600:12146 ( -40) saved region 6775:12186 - closest 3' read 85774 ( -217) 6992:12791 ( +605) search for confused edges: discard region 6775:12186 - no confusion in best edges Annotating repeats in reads for tig 4941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4942/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4944/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4947/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4950/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2208:4669 - contained in read 88126 0- 7430 discard region 5170:7472 - contained in read 262597 1808- 8754 discard region 7541:8119 - contained in read 262597 1808- 8754 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4952/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 3424:7266 - contained in read 88250 2- 7266 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4953/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 13847:12456 - contained in read 470995 8736- 13681 thickest edges to the repeat regions: saved region 1975:7449 - closest 5' read 423963 ( +1975) 0:7144 ( -305) saved region 1975:7449 - closest 3' read 519183 ( -391) 2366:10568 ( +3119) search for confused edges: discard region 1975:7449 - no confusion in best edges Annotating repeats in reads for tig 4956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4959/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4963/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4965/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4782:6647 - contained in read 90160 169- 6702 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4966/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4970/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3689:4211 - contained in read 90702 0- 5746 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4974/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4977/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 0:6345 - contained in read 92498 0- 7953 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4978/90584. Annotated with 137 overlaps. Scan reads to discard spanned repeats. discard region 13062:14182 - contained in read 156838 6473- 15443 thickest edges to the repeat regions: saved region 1391:12076 - closest 5' read 315831 ( +1379) 12:10180 ( -1896) saved region 1391:12076 - closest 3' read 313330 ( -3911) 5302:14130 ( +2054) search for confused edges: discard region 1391:12076 - no confusion in best edges Annotating repeats in reads for tig 4979/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2151:9104 - closest 5' read 92608 ( +1887) 264:5314 ( -3790) saved region 2151:9104 - closest 3' read 409278 ( -2601) 4752:10427 ( +1323) search for confused edges: discard region 2151:9104 - no confusion in best edges Annotating repeats in reads for tig 4980/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 38:7858 - contained in read 295384 0- 8944 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4982/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4992/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4994/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6417:12770 - closest 5' read 95824 ( +5796) 621:7093 ( -5677) saved region 6417:12770 - closest 3' read 471065 ( -53) 6470:12811 ( +41) search for confused edges: discard region 6417:12770 - no confusion in best edges Annotating repeats in reads for tig 4995/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 767:7358 - closest 5' read 434202 ( +572) 195:7216 ( -142) saved region 767:7358 - closest 3' read 434201 ( -42) 809:7402 ( +44) search for confused edges: discard region 767:7358 - no confusion in best edges Annotating repeats in reads for tig 4997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4998/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:4750 - contained in read 428429 0- 7821 discard region 8579:10048 - contained in read 95946 4822- 10048 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 4999/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 967:2426 - contained in read 96401 0- 5344 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5000/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2:1448 - contained in read 96473 0- 6519 discard region 1964:4204 - contained in read 96473 0- 6519 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5001/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3:6585 - closest read 96537 ( +3) 0:6950 ( +365) (contained) saved region 3:6585 - closest 5' read 96537 ( +3) 0:6950 ( +365) saved region 3:6585 - closest 3' read 96537 ( +3) 0:6950 ( +365) search for confused edges: discard region 3:6585 - no confusion in best edges Annotating repeats in reads for tig 5002/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 7431:8464 - contained in read 104428 3989- 11899 discard region 8521:9040 - contained in read 104428 3989- 11899 discard region 11946:11372 - contained in read 104428 3989- 11899 thickest edges to the repeat regions: saved region 1229:7378 - closest 5' read 96622 ( +1229) 0:6423 ( -955) saved region 1229:7378 - closest 3' read 22208 ( -2742) 3971:8467 ( +1089) search for confused edges: discard region 1229:7378 - no confusion in best edges Annotating repeats in reads for tig 5003/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5006/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 961:4671 - closest read 320680 ( +961) 0:4684 ( +13) (contained) saved region 961:4671 - closest 5' read 320680 ( +961) 0:4684 ( +13) saved region 961:4671 - closest 3' read 320680 ( +961) 0:4684 ( +13) search for confused edges: discard region 961:4671 - no confusion in best edges Annotating repeats in reads for tig 5011/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5015/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 3572:7103 - contained in read 203422 32- 8379 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5016/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10311:11645 - contained in read 12662 0- 13358 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5017/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 6686:9706 - contained in read 129827 2419- 13647 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5020/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 723:3581 - contained in read 210875 0- 5564 discard region 5197:8331 - contained in read 102028 916- 8331 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5021/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2000:288 - contained in read 102158 0- 8454 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5024/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 224:2372 - closest read 53881 ( +54) 170:2382 ( +10) (contained) saved region 224:2372 - closest read 53879 ( +53) 171:2377 ( +5) (contained) saved region 224:2372 - closest read 196420 ( +46) 178:2782 ( +410) (contained) saved region 224:2372 - closest read 375982 ( +45) 179:2867 ( +495) (contained) saved region 224:2372 - closest read 19793 ( +41) 183:2388 ( +16) (contained) saved region 224:2372 - closest read 375980 ( +40) 184:9967 ( +7595) (contained) saved region 224:2372 - closest read 383014 ( +38) 186:2375 ( +3) (contained) saved region 224:2372 - closest read 503264 ( +37) 187:2383 ( +11) (contained) saved region 224:2372 - closest read 287329 ( +37) 187:2377 ( +5) (contained) saved region 224:2372 - closest read 19792 ( +36) 188:2374 ( +2) (contained) saved region 224:2372 - closest read 381739 ( +36) 188:2372 ( +0) (contained) saved region 224:2372 - closest read 19794 ( +34) 190:2392 ( +20) (contained) saved region 224:2372 - closest read 63242 ( +34) 190:2389 ( +17) (contained) saved region 224:2372 - closest 5' read 375980 ( +40) 184:9967 ( +7595) saved region 224:2372 - closest 3' read 53881 ( +54) 170:2382 ( +10) search for confused edges: discard region 224:2372 - no confusion in best edges Annotating repeats in reads for tig 5025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5029/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:1352 - contained in read 312250 0- 2151 discard region 2222:3399 - contained in read 307352 42- 8398 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5032/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5034/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5035/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5040/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 3783:4576 - contained in read 106717 0- 7090 discard region 5422:9002 - contained in read 297635 4005- 9788 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5041/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5042/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5043/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1987:1420 - contained in read 107805 0- 5668 discard region 2157:1635 - contained in read 107805 0- 5668 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5047/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5050/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5051/90584. Annotated with 1123 overlaps. Scan reads to discard spanned repeats. discard region 6172:13015 - contained in read 324264 2345- 13884 thickest edges to the repeat regions: saved region 13038:18800 - closest 5' read 445487 ( +3) 13035:18723 ( -77) saved region 13038:18800 - closest 3' read 281973 ( -32) 13070:19525 ( +725) search for confused edges: tig 5051 read 324266 pos 2535-13876 IS confused by 5' edge to read 210830 - best edge read 281973 len 806 erate 0.0371 score 776.10 - alt edge len 805 erate 0.0360 score 776.02 - absdiff 0.08 percdiff 0.0100 tig 5051 read 324266 pos 2535-13876 IS confused by 5' edge to read 210831 - best edge read 281973 len 806 erate 0.0371 score 776.10 - alt edge len 804 erate 0.0438 score 768.78 - absdiff 7.31 percdiff 0.9467 tig 5051 read 324266 pos 2535-13876 IS confused by 5' edge to read 313641 - best edge read 281973 len 806 erate 0.0371 score 776.10 - alt edge len 800 erate 0.0238 score 780.96 - absdiff 4.86 percdiff 0.6246 tig 5051 read 324266 pos 2535-13876 IS confused by 5' edge to read 425448 - best edge read 281973 len 806 erate 0.0371 score 776.10 - alt edge len 804 erate 0.0384 score 773.13 - absdiff 2.97 percdiff 0.3835 tig 5051 read 324266 pos 2535-13876 IS confused by 5' edge to read 529937 - best edge read 281973 len 806 erate 0.0371 score 776.10 - alt edge len 801 erate 0.0200 score 784.98 - absdiff 8.88 percdiff 1.1380 saved region 13038:18800 - 5 best edges are potentially confused break tig 5051 into up to 3 pieces: 0 12538 unique (length 12538) 12538 19300 repeat (length 6762) 19300 21889 unique (length 2589) Creating Unitig 91181 Creating Unitig 91182 Creating Unitig 91183 For tig 5051 unique region 0 12538 - 0/ 18 reads repeat/unique - unitig 91181 created. For tig 5051 repeat region 12538 19300 - 3/ 0 reads repeat/unique - unitig 91182 created. For tig 5051 unique region 19300 21889 - 0/ 3 reads repeat/unique - unitig 91183 created. Annotating repeats in reads for tig 5052/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 5235:4095 - contained in read 109092 0- 5883 discard region 5495:7015 - contained in read 225832 1688- 9418 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5053/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5054/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5056/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4314:8525 - closest 5' read 152306 ( +1532) 2782:8450 ( -75) saved region 4314:8525 - closest 3' read 140302 ( -1669) 5983:10434 ( +1909) search for confused edges: discard region 4314:8525 - no confusion in best edges Annotating repeats in reads for tig 5058/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5759:6295 - contained in read 306559 0- 7605 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5059/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 2931:4914 - contained in read 134923 1737- 8984 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5063/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5068/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1240:6377 - closest 5' read 113493 ( +1177) 63:6088 ( -289) saved region 1240:6377 - closest 3' read 49841 ( -9) 1249:6379 ( +2) search for confused edges: tig 5068 read 113493 pos 63-6088 NOT confused by 5' edge to read 140444 - best edge read 49841 len 4839 erate 0.0068 score 4806.09 - alt edge len 2516 erate 0.0284 score 2444.55 - absdiff 2361.55 percdiff 65.1404 tig 5068 read 113493 pos 63-6088 IS confused by 5' edge to read 317573 - best edge read 49841 len 4839 erate 0.0068 score 4806.09 - alt edge len 4195 erate 0.0098 score 4153.89 - absdiff 652.21 percdiff 14.5582 tig 5068 read 113493 pos 63-6088 IS confused by 5' edge to read 371360 - best edge read 49841 len 4839 erate 0.0068 score 4806.09 - alt edge len 4164 erate 0.0198 score 4081.55 - absdiff 724.54 percdiff 16.3045 tig 5068 read 113493 pos 63-6088 IS confused by 5' edge to read 371362 - best edge read 49841 len 4839 erate 0.0068 score 4806.09 - alt edge len 4173 erate 0.0082 score 4138.78 - absdiff 667.31 percdiff 14.9206 tig 5068 read 113493 pos 63-6088 IS confused by 5' edge to read 439360 - best edge read 49841 len 4839 erate 0.0068 score 4806.09 - alt edge len 4832 erate 0.0091 score 4788.03 - absdiff 18.07 percdiff 0.3766 saved region 1240:6377 - 4 best edges are potentially confused break tig 5068 into up to 2 pieces: 0 740 unique (length 740) 740 6379 repeat (length 5639) Creating Unitig 91184 Creating Unitig 91185 For tig 5068 unique region 0 740 - 0/ 5 reads repeat/unique - unitig 91184 created. For tig 5068 repeat region 740 6379 - 7/ 0 reads repeat/unique - unitig 91185 created. Annotating repeats in reads for tig 5069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5070/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 3024:4241 - contained in read 114022 0- 6689 discard region 4958:9257 - contained in read 458029 3974- 13591 discard region 9252:10941 - contained in read 458029 3974- 13591 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5072/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7526:8862 - closest read 459337 ( +5277) 2249:8909 ( +47) (contained) saved region 7526:8862 - closest read 438239 ( +2495) 5031:9135 ( +273) (contained) saved region 7526:8862 - closest read 218866 ( +2360) 5166:9088 ( +226) (contained) saved region 7526:8862 - closest read 114334 ( +232) 7294:11125 ( +2263) (contained) saved region 7526:8862 - closest 5' read 114334 ( +232) 7294:11125 ( +2263) saved region 7526:8862 - closest 3' read 459337 ( +5277) 2249:8909 ( +47) search for confused edges: discard region 7526:8862 - no confusion in best edges Annotating repeats in reads for tig 5073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5078/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 982:2175 - contained in read 436682 0- 5745 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5079/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5090/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 555:5122 - contained in read 119798 0- 6721 discard region 6142:7307 - contained in read 119797 1693- 8233 discard region 7440:8227 - contained in read 531631 6361- 10928 discard region 9672:10918 - contained in read 405234 6459- 16282 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5099/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5101/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6731:10522 - closest read 475936 ( +356) 6375:15093 ( +4571) (contained) saved region 6731:10522 - closest read 122292 ( +352) 6379:15310 ( +4788) (contained) saved region 6731:10522 - closest 5' read 122292 ( +352) 6379:15310 ( +4788) saved region 6731:10522 - closest 3' read 475936 ( +356) 6375:15093 ( +4571) search for confused edges: discard region 6731:10522 - no confusion in best edges Annotating repeats in reads for tig 5102/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8986:5438 - contained in read 313162 0- 6409 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5110/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5112/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5113/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5117/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 0:2706 - contained in read 124170 0- 4147 discard region 4549:3054 - contained in read 124170 0- 4147 discard region 5295:6211 - contained in read 322669 2867- 9243 discard region 8448:9255 - contained in read 429244 5636- 11927 discard region 18787:20336 - contained in read 224260 10775- 24762 thickest edges to the repeat regions: saved region 10776:12705 - closest read 224260 ( +1) 10775:24762 (+12057) (contained) saved region 10776:12705 - closest 5' read 224260 ( +1) 10775:24762 (+12057) saved region 10776:12705 - closest 3' read 224260 ( +1) 10775:24762 (+12057) search for confused edges: discard region 10776:12705 - no confusion in best edges Annotating repeats in reads for tig 5118/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5120/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5122/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:4833 - contained in read 125824 0- 6729 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5132/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 175:8707 - closest 5' read 441283 ( +175) 0:5598 ( -3109) saved region 175:8707 - closest 3' read 129317 ( -2005) 2180:8707 ( +0) search for confused edges: discard region 175:8707 - no confusion in best edges Annotating repeats in reads for tig 5133/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1564:6873 - closest read 314575 ( +343) 1221:6873 ( +0) (contained) saved region 1564:6873 - closest 5' read 314575 ( +343) 1221:6873 ( +0) saved region 1564:6873 - closest 3' read 314575 ( +343) 1221:6873 ( +0) search for confused edges: discard region 1564:6873 - no confusion in best edges Annotating repeats in reads for tig 5134/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 11072:12784 - contained in read 319675 6303- 14410 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5135/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5138/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9651:10756 - contained in read 129887 7048- 12997 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5148/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 8551:12471 - contained in read 287407 3057- 12471 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5150/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5153/90584. Annotated with 272 overlaps. Scan reads to discard spanned repeats. discard region 1032:6022 - contained in read 133546 16- 6022 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5154/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5160/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5161/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5162/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 57:699 - contained in read 258876 0- 2097 discard region 2356:1280 - contained in read 258876 0- 2097 discard region 2406:3158 - contained in read 135677 1178- 3159 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5166/90584. Annotated with 62 overlaps. Scan reads to discard spanned repeats. discard region 1:6072 - contained in read 497543 0- 10772 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5167/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4062:6286 - contained in read 136554 33- 8659 discard region 6306:10100 - contained in read 276612 3927- 10100 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5170/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6408:11185 - closest read 143556 ( +4653) 1755:11617 ( +432) (contained) saved region 6408:11185 - closest 5' read 143556 ( +4653) 1755:11617 ( +432) saved region 6408:11185 - closest 3' read 143556 ( +4653) 1755:11617 ( +432) search for confused edges: discard region 6408:11185 - no confusion in best edges Annotating repeats in reads for tig 5171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5176/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5410:4241 - contained in read 367017 0- 8098 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5178/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2339:4643 - contained in read 194024 1589- 4643 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5179/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5181/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 12902:14164 - contained in read 316160 8012- 15008 discard region 15270:16290 - contained in read 139972 12471- 16308 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5186/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5189/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2328:3420 - contained in read 141624 0- 6014 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5190/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3463:6034 - contained in read 45196 846- 6034 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5196/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5197/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 9884:11105 - contained in read 142855 5226- 12195 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5200/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5202/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5203/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5205/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5208/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3886:2865 - contained in read 144330 0- 4967 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5210/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5980:4753 - contained in read 471506 0- 7645 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5211/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 1554:4956 - contained in read 292969 0- 6454 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5213/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5989:8767 - contained in read 246142 285- 9989 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5214/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5217/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5221/90584. Annotated with 54 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3:3193 - closest read 286165 ( +3) 0:3367 ( +174) (contained) saved region 3:3193 - closest 5' read 286165 ( +3) 0:3367 ( +174) saved region 3:3193 - closest 3' read 286165 ( +3) 0:3367 ( +174) search for confused edges: discard region 3:3193 - no confusion in best edges Annotating repeats in reads for tig 5223/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5226/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5227/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5232/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5235/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 12395:11742 - contained in read 99200 3610- 12508 discard region 12629:11882 - contained in read 99200 3610- 12508 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5237/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5239/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5243/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2830:8111 - contained in read 150930 45- 8111 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5244/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 617:5185 - closest read 345266 ( +4) 613:7457 ( +2272) (contained) saved region 617:5185 - closest 5' read 345266 ( +4) 613:7457 ( +2272) saved region 617:5185 - closest 3' read 345266 ( +4) 613:7457 ( +2272) search for confused edges: discard region 617:5185 - no confusion in best edges Annotating repeats in reads for tig 5246/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1357:5177 - contained in read 251961 547- 6052 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5248/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 3922:5714 - contained in read 152489 5- 5716 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5252/90584. Annotated with 72 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 114:3895 - closest 5' read 475233 ( +114) 0:3882 ( -13) saved region 114:3895 - closest 3' read 240320 ( -2125) 2239:10929 ( +7034) search for confused edges: discard region 114:3895 - no confusion in best edges Annotating repeats in reads for tig 5253/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5254/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1315:5621 - contained in read 5591 0- 8392 thickest edges to the repeat regions: saved region 6778:11073 - closest 5' read 133057 ( +352) 6426:11047 ( -26) saved region 6778:11073 - closest 3' read 418733 ( -448) 7226:13558 ( +2485) search for confused edges: tig 5254 read 410892 pos 3074-11025 IS confused by 5' edge to read 442859 - best edge read 418733 len 3782 erate 0.0236 score 3692.74 - alt edge len 2788 erate 0.0259 score 2715.79 - absdiff 976.95 percdiff 30.4891 saved region 6778:11073 - 1 best edges are potentially confused break tig 5254 into up to 3 pieces: 0 6278 unique (length 6278) 6278 11573 repeat (length 5295) 11573 14390 unique (length 2817) Creating Unitig 91186 Creating Unitig 91187 Creating Unitig 91188 For tig 5254 unique region 0 6278 - 0/ 18 reads repeat/unique - unitig 91186 created. For tig 5254 repeat region 6278 11573 - 1/ 0 reads repeat/unique - unitig 91187 created. For tig 5254 unique region 11573 14390 - 0/ 4 reads repeat/unique - unitig 91188 created. Annotating repeats in reads for tig 5255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5257/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5259/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5477:3438 - contained in read 154109 0- 5909 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5260/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5264/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 15281:16705 - contained in read 154901 9761- 18585 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5265/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5266/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5271/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5273/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 6473:10413 - contained in read 132486 417- 16948 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5274/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5276/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5278/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5279/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5280/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5283/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5287/90584. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 1106:10354 - contained in read 494249 512- 10354 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5288/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5289/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5292/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2387:7216 - contained in read 415764 563- 10601 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5295/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 3456:7705 - contained in read 263172 1347- 10831 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5296/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5301/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 3793:7848 - contained in read 84800 2096- 11061 thickest edges to the repeat regions: saved region 10391:13071 - closest 5' read 84798 ( +5717) 4674:11086 ( -1985) saved region 10391:13071 - closest 3' read 388479 ( -6) 10397:13385 ( +314) search for confused edges: tig 5301 read 84799 pos 2219-11074 IS confused by 5' edge to read 414080 - best edge read 388479 len 677 erate 0.0295 score 657.03 - alt edge len 676 erate 0.0281 score 657.00 - absdiff 0.02 percdiff 0.0037 saved region 10391:13071 - 1 best edges are potentially confused break tig 5301 into up to 2 pieces: 0 9891 unique (length 9891) 9891 13385 repeat (length 3494) Creating Unitig 91189 Creating Unitig 91190 For tig 5301 unique region 0 9891 - 0/ 32 reads repeat/unique - unitig 91189 created. For tig 5301 repeat region 9891 13385 - 3/ 0 reads repeat/unique - unitig 91190 created. Annotating repeats in reads for tig 5302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5306/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2017:5159 - contained in read 166099 0- 6209 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5309/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2942:1568 - contained in read 167524 0- 5175 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5312/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5319/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5321/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5322/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5323/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5338/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5157:4558 - contained in read 173467 0- 5422 discard region 5283:6587 - contained in read 45437 4323- 10052 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5341/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3265:5683 - closest 5' read 143029 ( +3265) 0:5650 ( -33) saved region 3265:5683 - closest 3' read 422241 ( -10) 3275:5686 ( +3) search for confused edges: discard region 3265:5683 - no confusion in best edges Annotating repeats in reads for tig 5345/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8046:10571 - closest 5' read 503720 ( +8046) 0:10537 ( -34) saved region 8046:10571 - closest 3' read 521134 ( -412) 8458:12140 ( +1569) search for confused edges: discard region 8046:10571 - no confusion in best edges Annotating repeats in reads for tig 5346/90584. Annotated with 124 overlaps. Scan reads to discard spanned repeats. discard region 0:10848 - contained in read 410420 0- 15564 discard region 12984:23359 - contained in read 177488 4932- 23359 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5350/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8887:11490 - contained in read 481716 5987- 11828 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5360/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4288:9583 - closest 5' read 317045 ( +545) 3743:7416 ( -2167) saved region 4288:9583 - closest 3' read 448065 ( -282) 4570:10993 ( +1410) search for confused edges: discard region 4288:9583 - no confusion in best edges Annotating repeats in reads for tig 5361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5363/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5364/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 5868:8132 - contained in read 182366 3830- 8414 thickest edges to the repeat regions: saved region 3683:5867 - closest read 12899 ( +3683) 0:6130 ( +263) (contained) saved region 3683:5867 - closest read 511659 ( +3561) 122:5868 ( +1) (contained) saved region 3683:5867 - closest 5' read 12899 ( +3683) 0:6130 ( +263) saved region 3683:5867 - closest 3' read 12899 ( +3683) 0:6130 ( +263) search for confused edges: discard region 3683:5867 - no confusion in best edges Annotating repeats in reads for tig 5365/90584. Annotated with 80 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8915:13665 - closest read 432558 ( +10) 8905:13762 ( +97) (contained) saved region 8915:13665 - closest 5' read 432558 ( +10) 8905:13762 ( +97) saved region 8915:13665 - closest 3' read 432558 ( +10) 8905:13762 ( +97) search for confused edges: discard region 8915:13665 - no confusion in best edges Annotating repeats in reads for tig 5366/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9479:6918 - contained in read 182586 0- 9357 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5368/90584. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 591:0 - contained in read 183254 0- 3529 discard region 2846:2297 - contained in read 183254 0- 3529 thickest edges to the repeat regions: saved region 4522:11884 - closest 5' read 135597 ( +4) 4518:10230 ( -1654) saved region 4522:11884 - closest 3' read 460621 ( -222) 4744:14053 ( +2169) search for confused edges: tig 5368 read 475505 pos 1176-7830 NOT confused by 5' edge to read 14638 - best edge read 460621 len 3086 erate 0.0266 score 3003.91 - alt edge len 835 erate 0.0121 score 824.90 - absdiff 2179.02 percdiff 113.8221 discard region 4522:11884 - no confusion in best edges Annotating repeats in reads for tig 5369/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5370/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5373/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7166:8592 - contained in read 335979 4811- 8592 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5376/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5381/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5386/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5388/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5389/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5392/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5396/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3173:3723 - contained in read 404734 61- 6758 discard region 3840:5412 - contained in read 404734 61- 6758 discard region 5792:7892 - contained in read 22148 66- 10657 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5398/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5399/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2:7357 - closest read 23861 ( +2) 0:7663 ( +306) (contained) saved region 2:7357 - closest 5' read 23861 ( +2) 0:7663 ( +306) saved region 2:7357 - closest 3' read 23861 ( +2) 0:7663 ( +306) search for confused edges: discard region 2:7357 - no confusion in best edges Annotating repeats in reads for tig 5401/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 9393:14496 - contained in read 190075 7852- 14496 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5405/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5407/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1201:2780 - contained in read 192306 0- 5791 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5408/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5410/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3132:590 - contained in read 193036 0- 4857 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5412/90584. Annotated with 223 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4343:6890 - closest 5' read 193561 ( +4293) 50:6003 ( -887) saved region 4343:6890 - closest 3' read 230614 ( -637) 4980:11686 ( +4796) search for confused edges: discard region 4343:6890 - no confusion in best edges Annotating repeats in reads for tig 5413/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5418/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5421/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 10299:12775 - contained in read 195061 4843- 12775 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5426/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3827:5381 - closest 5' read 36951 ( +3790) 37:5374 ( -7) saved region 3827:5381 - closest 3' read 215418 ( -139) 3966:10823 ( +5442) search for confused edges: discard region 3827:5381 - no confusion in best edges Annotating repeats in reads for tig 5430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5431/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5432/90584. Annotated with 56 overlaps. Scan reads to discard spanned repeats. discard region 2907:8534 - contained in read 385462 1742- 8534 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5436/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 1939:4444 - contained in read 151142 0- 5534 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5439/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 2:5465 - contained in read 353115 0- 6205 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5440/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5441/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5443/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2118:4023 - contained in read 72353 0- 7895 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5446/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4931:5497 - contained in read 57708 0- 6121 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5450/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7264:7841 - contained in read 427617 0- 8645 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5452/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 910:3935 - contained in read 255430 0- 6912 thickest edges to the repeat regions: saved region 5535:8170 - closest read 517978 ( +3232) 2303:8448 ( +278) (contained) saved region 5535:8170 - closest read 517981 ( +3210) 2325:8440 ( +270) (contained) saved region 5535:8170 - closest read 274249 ( +2808) 2727:8172 ( +2) (contained) saved region 5535:8170 - closest 5' read 517978 ( +3232) 2303:8448 ( +278) saved region 5535:8170 - closest 3' read 517978 ( +3232) 2303:8448 ( +278) search for confused edges: discard region 5535:8170 - no confusion in best edges Annotating repeats in reads for tig 5453/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5454/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3290:4816 - contained in read 201455 0- 7823 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5456/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5463/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4664:5390 - contained in read 49492 1373- 8685 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5465/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5466/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 441:1066 - contained in read 204517 0- 6343 discard region 6742:7365 - contained in read 149490 5042- 10414 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5469/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5473/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5478/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 628:9 - contained in read 206571 0- 8729 discard region 5329:7256 - contained in read 206571 0- 8729 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5480/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7070:7626 - contained in read 25882 3727- 10243 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5481/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1864:2416 - contained in read 370061 0- 7977 discard region 8061:8602 - contained in read 207824 3664- 12806 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5483/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5485/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5489/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5490/90584. Annotated with 308 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:11837 - closest 5' read 43647 ( +0) 0:11385 ( -452) saved region 0:11837 - closest 3' read 209437 ( -8074) 8074:13072 ( +1235) search for confused edges: tig 5490 read 209437 pos 8074-13072 IS confused by 5' edge to read 293154 - best edge read 43647 len 3311 erate 0.0283 score 3217.30 - alt edge len 2116 erate 0.0406 score 2030.09 - absdiff 1187.21 percdiff 45.2495 saved region 0:11837 - 1 best edges are potentially confused break tig 5490 into up to 2 pieces: 0 12337 repeat (length 12337) 12337 13072 unique (length 735) Creating Unitig 91191 Creating Unitig 91192 For tig 5490 repeat region 0 12337 - 49/ 0 reads repeat/unique - unitig 91191 created. For tig 5490 unique region 12337 13072 - 0/ 3 reads repeat/unique - unitig 91192 created. Annotating repeats in reads for tig 5492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5494/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 3459:7337 - contained in read 353805 13- 9391 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5497/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5499/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5500/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5501/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5502/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 290:4709 - closest 5' read 211899 ( +287) 3:3093 ( -1616) saved region 290:4709 - closest 3' read 433160 ( -25) 315:6703 ( +1994) search for confused edges: tig 5502 read 433160 pos 315-6703 IS confused by 5' edge to read 243080 - best edge read 211899 len 2771 erate 0.0130 score 2734.98 - alt edge len 1823 erate 0.0308 score 1766.85 - absdiff 968.13 percdiff 43.0103 tig 5502 read 433160 pos 315-6703 IS confused by 5' edge to read 243081 - best edge read 211899 len 2771 erate 0.0130 score 2734.98 - alt edge len 1826 erate 0.0307 score 1769.94 - absdiff 965.04 percdiff 42.8436 tig 5502 read 433160 pos 315-6703 IS confused by 5' edge to read 376011 - best edge read 211899 len 2771 erate 0.0130 score 2734.98 - alt edge len 2215 erate 0.0190 score 2172.91 - absdiff 562.06 percdiff 22.9044 saved region 290:4709 - 3 best edges are potentially confused break tig 5502 into up to 2 pieces: 0 5209 repeat (length 5209) 5209 13841 unique (length 8632) Creating Unitig 91193 Creating Unitig 91194 For tig 5502 repeat region 0 5209 - 7/ 0 reads repeat/unique - unitig 91193 created. For tig 5502 unique region 5209 13841 - 0/ 10 reads repeat/unique - unitig 91194 created. Annotating repeats in reads for tig 5503/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4486:5752 - contained in read 212135 707- 6142 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5507/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 812:2112 - contained in read 212888 0- 6748 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5508/90584. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 8517:13199 - contained in read 336900 5132- 15731 thickest edges to the repeat regions: saved region 3888:7951 - closest read 401092 ( +3888) 0:7988 ( +37) (contained) saved region 3888:7951 - closest read 448774 ( +1365) 2523:7966 ( +15) (contained) saved region 3888:7951 - closest read 184174 ( +168) 3720:9637 ( +1686) (contained) saved region 3888:7951 - closest 5' read 184174 ( +168) 3720:9637 ( +1686) saved region 3888:7951 - closest 3' read 401092 ( +3888) 0:7988 ( +37) search for confused edges: discard region 3888:7951 - no confusion in best edges Annotating repeats in reads for tig 5510/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5513/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5514/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5516/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5519/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7025:7860 - contained in read 124782 0- 9308 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5528/90584. Annotated with 49 overlaps. Scan reads to discard spanned repeats. discard region 1581:2493 - contained in read 428747 0- 10886 discard region 4725:6945 - contained in read 428747 0- 10886 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5531/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:2525 - closest read 27878 ( +0) 0:2638 ( +113) (contained) saved region 0:2525 - closest 5' read 27878 ( +0) 0:2638 ( +113) saved region 0:2525 - closest 3' read 27878 ( +0) 0:2638 ( +113) search for confused edges: discard region 0:2525 - no confusion in best edges Annotating repeats in reads for tig 5532/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1374:0 - contained in read 218402 0- 6105 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5535/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 3081:2038 - contained in read 218853 0- 8089 thickest edges to the repeat regions: saved region 8607:12910 - closest read 439657 ( +173) 8434:14279 ( +1369) (contained) saved region 8607:12910 - closest read 439656 ( +172) 8435:14253 ( +1343) (contained) saved region 8607:12910 - closest read 439655 ( +169) 8438:14284 ( +1374) (contained) saved region 8607:12910 - closest read 439653 ( +145) 8462:14279 ( +1369) (contained) saved region 8607:12910 - closest 5' read 439655 ( +169) 8438:14284 ( +1374) saved region 8607:12910 - closest 3' read 439657 ( +173) 8434:14279 ( +1369) saved region 12925:14078 - closest read 439657 ( +4491) 8434:14279 ( +201) (contained) saved region 12925:14078 - closest read 439656 ( +4490) 8435:14253 ( +175) (contained) saved region 12925:14078 - closest read 439655 ( +4487) 8438:14284 ( +206) (contained) saved region 12925:14078 - closest read 439653 ( +4463) 8462:14279 ( +201) (contained) saved region 12925:14078 - closest read 354329 ( +1) 12924:17654 ( +3576) (contained) saved region 12925:14078 - closest 5' read 354329 ( +1) 12924:17654 ( +3576) saved region 12925:14078 - closest 3' read 439657 ( +4491) 8434:14279 ( +201) search for confused edges: discard region 8607:12910 - no confusion in best edges discard region 12925:14078 - no confusion in best edges Annotating repeats in reads for tig 5537/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5467:8538 - closest 5' read 332203 ( +5433) 34:8206 ( -332) saved region 5467:8538 - closest 3' read 411217 ( -34) 5501:8713 ( +175) search for confused edges: discard region 5467:8538 - no confusion in best edges Annotating repeats in reads for tig 5538/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8565:11579 - contained in read 219137 6796- 11579 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5540/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5541/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9114:6929 - contained in read 219498 5633- 9128 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5546/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6884:9931 - closest 5' read 397190 ( +6) 6878:9558 ( -373) saved region 6884:9931 - closest 3' read 220299 ( -42) 6926:10261 ( +330) search for confused edges: tig 5546 read 414080 pos 6900-9785 IS confused by 3' edge to read 84799 - best edge read 397190 len 2658 erate 0.0241 score 2593.94 - alt edge len 681 erate 0.0281 score 661.86 - absdiff 1932.08 percdiff 118.6851 tig 5546 read 414080 pos 6900-9785 IS confused by 3' edge to read 84800 - best edge read 397190 len 2658 erate 0.0241 score 2593.94 - alt edge len 672 erate 0.0255 score 654.86 - absdiff 1939.08 percdiff 119.3717 tig 5546 read 220299 pos 6926-10261 NOT confused by 5' edge to read 84800 - best edge read 414080 len 2859 erate 0.0296 score 2774.37 - alt edge len 642 erate 0.0254 score 625.69 - absdiff 2148.68 percdiff 126.3905 saved region 6884:9931 - 2 best edges are potentially confused break tig 5546 into up to 2 pieces: 0 6384 unique (length 6384) 6384 10261 repeat (length 3877) Creating Unitig 91195 Creating Unitig 91196 For tig 5546 unique region 0 6384 - 0/ 2 reads repeat/unique - unitig 91195 created. For tig 5546 repeat region 6384 10261 - 10/ 0 reads repeat/unique - unitig 91196 created. Annotating repeats in reads for tig 5547/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5551/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 2236:8124 - contained in read 335251 0- 12294 thickest edges to the repeat regions: saved region 8306:13905 - closest read 343523 ( +1649) 6657:13941 ( +36) (contained) saved region 8306:13905 - closest read 221163 ( +111) 8195:14272 ( +367) (contained) saved region 8306:13905 - closest 5' read 221163 ( +111) 8195:14272 ( +367) saved region 8306:13905 - closest 3' read 343523 ( +1649) 6657:13941 ( +36) search for confused edges: discard region 8306:13905 - no confusion in best edges Annotating repeats in reads for tig 5553/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 3710:898 - contained in read 467870 10- 1963 discard region 5884:6692 - contained in read 423286 1697- 9458 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5559/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5158:6221 - closest read 286537 ( +5158) 0:6227 ( +6) (contained) saved region 5158:6221 - closest read 356080 ( +0) 5158:8607 ( +2386) (contained) saved region 5158:6221 - closest 5' read 356080 ( +0) 5158:8607 ( +2386) saved region 5158:6221 - closest 3' read 286537 ( +5158) 0:6227 ( +6) search for confused edges: discard region 5158:6221 - no confusion in best edges Annotating repeats in reads for tig 5561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5562/90584. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 12:4766 - contained in read 194960 0- 5540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5565/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2277:6193 - contained in read 223640 282- 6203 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5566/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 6319:9408 - contained in read 424254 4777- 10406 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5572/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 6167:9147 - contained in read 443585 81- 11943 discard region 9122:11952 - contained in read 477965 7280- 15286 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5576/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5578/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5579/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5585/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5586/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 1083:2100 - contained in read 229224 0- 5444 thickest edges to the repeat regions: saved region 2552:5475 - closest 5' read 229225 ( +2543) 9:5457 ( -18) saved region 2552:5475 - closest 3' read 321980 ( -39) 2591:5484 ( +9) search for confused edges: tig 5586 read 229225 pos 9-5457 IS confused by 5' edge to read 116977 - best edge read 321980 len 2866 erate 0.0343 score 2767.70 - alt edge len 762 erate 0.0262 score 742.04 - absdiff 2025.66 percdiff 115.4311 tig 5586 read 229225 pos 9-5457 IS confused by 5' edge to read 160941 - best edge read 321980 len 2866 erate 0.0343 score 2767.70 - alt edge len 1013 erate 0.0366 score 975.92 - absdiff 1791.77 percdiff 95.7240 saved region 2552:5475 - 2 best edges are potentially confused break tig 5586 into up to 2 pieces: 0 2052 unique (length 2052) 2052 5484 repeat (length 3432) Creating Unitig 91197 Creating Unitig 91198 For tig 5586 unique region 0 2052 - 0/ 4 reads repeat/unique - unitig 91197 created. For tig 5586 repeat region 2052 5484 - 3/ 0 reads repeat/unique - unitig 91198 created. Annotating repeats in reads for tig 5587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5589/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 1106:3017 - contained in read 229973 0- 5091 discard region 6827:8992 - contained in read 93210 4144- 11791 discard region 11906:12813 - contained in read 245142 5075- 13650 thickest edges to the repeat regions: saved region 3306:6280 - closest read 105371 ( +122) 3184:9139 ( +2859) (contained) saved region 3306:6280 - closest 5' read 105371 ( +122) 3184:9139 ( +2859) saved region 3306:6280 - closest 3' read 105371 ( +122) 3184:9139 ( +2859) search for confused edges: discard region 3306:6280 - no confusion in best edges Annotating repeats in reads for tig 5591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5597/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2291:6587 - contained in read 304629 1494- 6587 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5598/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2741:3361 - contained in read 467309 0- 6377 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5600/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5606/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5607/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5608/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5616/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6424:7375 - contained in read 317277 2142- 7375 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5619/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5646:6823 - contained in read 107493 328- 6823 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5620/90584. Annotated with 181 overlaps. Scan reads to discard spanned repeats. discard region 15645:13726 - contained in read 86211 11429- 22493 discard region 15648:13781 - contained in read 86211 11429- 22493 discard region 15684:14025 - contained in read 86211 11429- 22493 discard region 22689:24741 - contained in read 502474 20455- 24764 thickest edges to the repeat regions: saved region 1641:13476 - closest 5' read 372384 ( +0) 1641:7170 ( -6306) saved region 1641:13476 - closest 3' read 86211 ( -9788) 11429:22493 ( +9017) saved region 20437:22488 - closest read 86211 ( +9008) 11429:22493 ( +5) (contained) saved region 20437:22488 - closest 5' read 86211 ( +9008) 11429:22493 ( +5) saved region 20437:22488 - closest 3' read 86211 ( +9008) 11429:22493 ( +5) search for confused edges: tig 5620 read 237771 pos 222-6135 IS confused by 5' edge to read 86211 - best edge read 153241 len 3438 erate 0.0181 score 3375.77 - alt edge len 1461 erate 0.0338 score 1411.62 - absdiff 1964.15 percdiff 82.0553 tig 5620 read 237771 pos 222-6135 IS confused by 5' edge to read 449354 - best edge read 153241 len 3438 erate 0.0181 score 3375.77 - alt edge len 1419 erate 0.0294 score 1377.28 - absdiff 1998.49 percdiff 84.0929 tig 5620 read 153241 pos 2697-12714 IS confused by 5' edge to read 86210 - best edge read 237771 len 3440 erate 0.0181 score 3377.74 - alt edge len 1782 erate 0.0321 score 1724.80 - absdiff 1652.94 percdiff 64.7889 tig 5620 read 153241 pos 2697-12714 IS confused by 5' edge to read 449354 - best edge read 237771 len 3440 erate 0.0181 score 3377.74 - alt edge len 1744 erate 0.0214 score 1706.68 - absdiff 1671.06 percdiff 65.7325 tig 5620 read 153241 pos 2697-12714 IS confused by 3' edge to read 502474 - best edge read 86211 len 1285 erate 0.0289 score 1247.86 - alt edge len 1259 erate 0.0430 score 1204.86 - absdiff 43.00 percdiff 3.5063 tig 5620 read 502474 pos 20455-24764 IS confused by 3' edge to read 86210 - best edge read 86211 len 2031 erate 0.0251 score 1980.02 - alt edge len 2030 erate 0.0276 score 1973.97 - absdiff 6.05 percdiff 0.3060 tig 5620 read 502474 pos 20455-24764 IS confused by 3' edge to read 153241 - best edge read 86211 len 2031 erate 0.0251 score 1980.02 - alt edge len 1255 erate 0.0430 score 1201.03 - absdiff 778.99 percdiff 48.9766 tig 5620 read 502474 pos 20455-24764 IS confused by 3' edge to read 529449 - best edge read 86211 len 2031 erate 0.0251 score 1980.02 - alt edge len 704 erate 0.0171 score 691.96 - absdiff 1288.06 percdiff 96.4123 saved region 1641:13476 - 5 best edges are potentially confused saved region 20437:22488 - 3 best edges are potentially confused break tig 5620 into up to 5 pieces: 0 1141 unique (length 1141) 1141 13976 repeat (length 12835) 13976 19937 unique (length 5961) 19937 22988 repeat (length 3051) 22988 24764 unique (length 1776) Creating Unitig 91199 Creating Unitig 91200 Creating Unitig 91201 Creating Unitig 91202 Creating Unitig 91203 For tig 5620 unique region 0 1141 - 0/ 3 reads repeat/unique - unitig 91199 created. For tig 5620 repeat region 1141 13976 - 47/ 0 reads repeat/unique - unitig 91200 created. For tig 5620 unique region 13976 19937 - 0/ 1 reads repeat/unique - unitig 91201 created. For tig 5620 repeat region 19937 22988 - 1/ 0 reads repeat/unique - unitig 91203 created. For tig 5620 unique region 22988 24764 - 0/ 1 reads repeat/unique - unitig 91202 created. Annotating repeats in reads for tig 5621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5622/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5623/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 2472:9177 - contained in read 497602 1327- 9177 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5645/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 12555:15949 - contained in read 511780 11874- 15949 thickest edges to the repeat regions: saved region 11871:12426 - closest read 530636 (+11746) 125:12581 ( +155) (contained) saved region 11871:12426 - closest read 495896 ( +7275) 4596:12747 ( +321) (contained) saved region 11871:12426 - closest read 495897 ( +7275) 4596:12559 ( +133) (contained) saved region 11871:12426 - closest read 495893 ( +7273) 4598:12666 ( +240) (contained) saved region 11871:12426 - closest read 495895 ( +7125) 4746:12779 ( +353) (contained) saved region 11871:12426 - closest read 495894 ( +7024) 4847:12692 ( +266) (contained) saved region 11871:12426 - closest read 495898 ( +4003) 7868:12791 ( +365) (contained) saved region 11871:12426 - closest read 346192 ( +3346) 8525:12704 ( +278) (contained) saved region 11871:12426 - closest 5' read 495898 ( +4003) 7868:12791 ( +365) saved region 11871:12426 - closest 3' read 530636 (+11746) 125:12581 ( +155) search for confused edges: discard region 11871:12426 - no confusion in best edges Annotating repeats in reads for tig 5652/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 6254:6968 - contained in read 245395 5101- 13919 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5653/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6967:6464 - contained in read 494563 5059- 11380 discard region 7603:7018 - contained in read 494563 5059- 11380 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5658/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5661/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 4027:5561 - contained in read 247565 0- 7254 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5663/90584. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 0:3753 - contained in read 248444 0- 6102 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5668/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5669/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5679/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4596:7191 - contained in read 250961 0- 9959 discard region 10309:9002 - contained in read 250961 0- 9959 discard region 10309:9114 - contained in read 250961 0- 9959 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5688/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5696/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5704/90584. Annotated with 228 overlaps. Scan reads to discard spanned repeats. discard region 4214:7911 - contained in read 259365 48- 7911 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5707/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5710/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6115:9649 - closest 5' read 274720 ( +2404) 3711:8914 ( -735) saved region 6115:9649 - closest 3' read 414663 ( -1211) 7326:13179 ( +3530) search for confused edges: discard region 6115:9649 - no confusion in best edges Annotating repeats in reads for tig 5714/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5715/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2781:3333 - contained in read 261392 0- 4957 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5720/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 4485:8798 - contained in read 192590 295- 8800 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5721/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2675:8444 - contained in read 262182 48- 8456 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5729/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5734/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5741/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5845:7945 - closest read 53058 ( +318) 5527:7973 ( +28) (contained) saved region 5845:7945 - closest read 83696 ( +55) 5790:7962 ( +17) (contained) saved region 5845:7945 - closest 5' read 53058 ( +318) 5527:7973 ( +28) saved region 5845:7945 - closest 3' read 53058 ( +318) 5527:7973 ( +28) search for confused edges: discard region 5845:7945 - no confusion in best edges Annotating repeats in reads for tig 5742/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 12577:13367 - contained in read 449751 7928- 13368 thickest edges to the repeat regions: saved region 4913:10034 - closest read 115197 ( +491) 4422:10040 ( +6) (contained) saved region 4913:10034 - closest 5' read 115197 ( +491) 4422:10040 ( +6) saved region 4913:10034 - closest 3' read 115197 ( +491) 4422:10040 ( +6) search for confused edges: discard region 4913:10034 - no confusion in best edges Annotating repeats in reads for tig 5743/90584. Annotated with 183 overlaps. Scan reads to discard spanned repeats. discard region 0:4038 - contained in read 266669 0- 5920 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5744/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 548:3201 - closest read 461416 ( +377) 171:3214 ( +13) (contained) saved region 548:3201 - closest 5' read 461416 ( +377) 171:3214 ( +13) saved region 548:3201 - closest 3' read 461416 ( +377) 171:3214 ( +13) search for confused edges: discard region 548:3201 - no confusion in best edges Annotating repeats in reads for tig 5745/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:7872 - closest read 267552 ( +0) 0:7887 ( +15) (contained) saved region 0:7872 - closest 5' read 267552 ( +0) 0:7887 ( +15) saved region 0:7872 - closest 3' read 267552 ( +0) 0:7887 ( +15) search for confused edges: discard region 0:7872 - no confusion in best edges Annotating repeats in reads for tig 5747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5751/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:4819 - contained in read 277306 0- 7229 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5758/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5164:6613 - contained in read 445770 56- 7445 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5759/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3383:2237 - contained in read 271381 0- 5626 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5762/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4063:5312 - contained in read 169380 1420- 6666 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5768/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2112:0 - contained in read 272620 0- 5887 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5774/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5788/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 6214:8121 - contained in read 391011 4113- 8121 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5789/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5790/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 0:4674 - contained in read 225275 0- 8076 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5795/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5819:7307 - contained in read 277620 0- 9597 thickest edges to the repeat regions: saved region 8791:9724 - closest read 35454 ( +0) 8791:14366 ( +4642) (contained) saved region 8791:9724 - closest 5' read 35454 ( +0) 8791:14366 ( +4642) saved region 8791:9724 - closest 3' read 35454 ( +0) 8791:14366 ( +4642) search for confused edges: discard region 8791:9724 - no confusion in best edges Annotating repeats in reads for tig 5796/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5797/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5462:9704 - closest read 385661 ( +4431) 1031:9705 ( +1) (contained) saved region 5462:9704 - closest 5' read 385661 ( +4431) 1031:9705 ( +1) saved region 5462:9704 - closest 3' read 385661 ( +4431) 1031:9705 ( +1) search for confused edges: discard region 5462:9704 - no confusion in best edges Annotating repeats in reads for tig 5803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5808/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 4504:3930 - contained in read 104487 0- 5424 discard region 5077:7485 - contained in read 280823 3982- 7485 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5821/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5826/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5315:5949 - closest read 275532 ( +376) 4939:6016 ( +67) (contained) saved region 5315:5949 - closest read 406813 ( +0) 5315:6459 ( +510) (contained) saved region 5315:5949 - closest 5' read 406813 ( +0) 5315:6459 ( +510) saved region 5315:5949 - closest 3' read 275532 ( +376) 4939:6016 ( +67) search for confused edges: discard region 5315:5949 - no confusion in best edges Annotating repeats in reads for tig 5828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5830/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2802:1523 - contained in read 211438 0- 2843 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5832/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 4683:7424 - contained in read 479262 15- 11685 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5834/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1117:5376 - closest read 134400 ( +0) 1117:10116 ( +4740) (contained) saved region 1117:5376 - closest 5' read 134400 ( +0) 1117:10116 ( +4740) saved region 1117:5376 - closest 3' read 134400 ( +0) 1117:10116 ( +4740) search for confused edges: discard region 1117:5376 - no confusion in best edges Annotating repeats in reads for tig 5841/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5843/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9214:13270 - closest 5' read 490533 ( +2288) 6926:10510 ( -2760) saved region 9214:13270 - closest 3' read 290750 ( -42) 9256:13437 ( +167) search for confused edges: discard region 9214:13270 - no confusion in best edges Annotating repeats in reads for tig 5845/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 92:1431 - closest read 291478 ( +92) 0:1434 ( +3) (contained) saved region 92:1431 - closest read 74704 ( +91) 1:5015 ( +3584) (contained) saved region 92:1431 - closest read 74702 ( +82) 10:2424 ( +993) (contained) saved region 92:1431 - closest read 74701 ( +80) 12:1950 ( +519) (contained) saved region 92:1431 - closest read 74703 ( +5) 87:3198 ( +1767) (contained) saved region 92:1431 - closest 5' read 74704 ( +91) 1:5015 ( +3584) saved region 92:1431 - closest 3' read 291478 ( +92) 0:1434 ( +3) search for confused edges: discard region 92:1431 - no confusion in best edges Annotating repeats in reads for tig 5847/90584. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 9624:12944 - contained in read 284300 6198- 13826 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5850/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 936:2614 - contained in read 292690 0- 3552 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5853/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5856/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5863/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5870/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5871/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2401:3496 - contained in read 342711 0- 7179 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5872/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 26:3950 - closest read 87847 ( +19) 7:4877 ( +927) (contained) saved region 26:3950 - closest 5' read 87847 ( +19) 7:4877 ( +927) saved region 26:3950 - closest 3' read 87847 ( +19) 7:4877 ( +927) search for confused edges: discard region 26:3950 - no confusion in best edges Annotating repeats in reads for tig 5873/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2674:5683 - contained in read 297567 22- 5683 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5874/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 302:2155 - contained in read 297575 0- 5557 discard region 3371:8380 - contained in read 145357 10- 8380 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5879/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5880/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5887/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5891/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5894/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5899/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5900/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 3989:3457 - contained in read 302897 0- 8736 discard region 3998:7388 - contained in read 302897 0- 8736 thickest edges to the repeat regions: saved region 8407:12215 - closest 5' read 507777 ( +4950) 3457:8974 ( -3241) saved region 8407:12215 - closest 3' read 195298 ( -5) 8412:13986 ( +1771) search for confused edges: discard region 8407:12215 - no confusion in best edges Annotating repeats in reads for tig 5902/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5909/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5919/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3599:4738 - contained in read 307614 0- 5247 discard region 5291:6066 - contained in read 315893 1783- 10135 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5922/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5924/90584. Annotated with 85 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5409:9973 - closest read 79835 ( +366) 5043:12194 ( +2221) (contained) saved region 5409:9973 - closest read 79836 ( +322) 5087:12604 ( +2631) (contained) saved region 5409:9973 - closest 5' read 79836 ( +322) 5087:12604 ( +2631) saved region 5409:9973 - closest 3' read 79835 ( +366) 5043:12194 ( +2221) search for confused edges: discard region 5409:9973 - no confusion in best edges Annotating repeats in reads for tig 5925/90584. Annotated with 70 overlaps. Scan reads to discard spanned repeats. discard region 3:5482 - contained in read 308709 0- 6247 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5927/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5942/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 565:3579 - contained in read 312417 0- 5540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5943/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 4844:6093 - contained in read 318511 975- 6808 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5944/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3926:6264 - contained in read 146141 45- 7429 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5949/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5954/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5955/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5961/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5965/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5974/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4903:6814 - closest read 381524 ( +4903) 0:6975 ( +161) (contained) saved region 4903:6814 - closest read 381523 ( +4892) 11:6999 ( +185) (contained) saved region 4903:6814 - closest read 381522 ( +4890) 13:6958 ( +144) (contained) saved region 4903:6814 - closest read 444335 ( +9) 4894:6976 ( +162) (contained) saved region 4903:6814 - closest 5' read 381523 ( +4892) 11:6999 ( +185) saved region 4903:6814 - closest 3' read 381524 ( +4903) 0:6975 ( +161) search for confused edges: discard region 4903:6814 - no confusion in best edges Annotating repeats in reads for tig 5975/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 2:1389 - contained in read 359262 0- 7000 thickest edges to the repeat regions: saved region 1425:7345 - closest 5' read 359262 ( +1425) 0:7000 ( -345) saved region 1425:7345 - closest 3' read 358709 ( -1582) 3007:7433 ( +88) search for confused edges: tig 5975 read 320603 pos 5033-7656 IS confused by 5' edge to read 512828 - best edge read 359262 len 1967 erate 0.0138 score 1939.86 - alt edge len 943 erate 0.0107 score 932.91 - absdiff 1006.95 percdiff 70.1029 saved region 1425:7345 - 1 best edges are potentially confused break tig 5975 into up to 2 pieces: 0 925 unique (length 925) 925 7656 repeat (length 6731) Creating Unitig 91204 Creating Unitig 91205 For tig 5975 unique region 0 925 - 0/ 5 reads repeat/unique - unitig 91204 created. For tig 5975 repeat region 925 7656 - 7/ 0 reads repeat/unique - unitig 91205 created. Annotating repeats in reads for tig 5977/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5982/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5986/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5991/90584. Annotated with 112 overlaps. Scan reads to discard spanned repeats. discard region 0:9369 - contained in read 323386 0- 10780 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5992/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5995/90584. Annotated with 131 overlaps. Scan reads to discard spanned repeats. discard region 3619:9920 - contained in read 362259 0- 10722 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 5997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6000/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6001/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 10789:12348 - closest 5' read 3371 ( +3667) 7122:12316 ( -32) saved region 10789:12348 - closest 3' read 40750 ( -1) 10790:14305 ( +1957) search for confused edges: tig 6001 read 3371 pos 7122-12316 IS confused by 5' edge to read 343408 - best edge read 40750 len 1526 erate 0.0328 score 1475.95 - alt edge len 632 erate 0.0365 score 608.93 - absdiff 867.02 percdiff 83.1717 tig 6001 read 3371 pos 7122-12316 IS confused by 5' edge to read 343409 - best edge read 40750 len 1526 erate 0.0328 score 1475.95 - alt edge len 622 erate 0.0370 score 598.99 - absdiff 876.96 percdiff 84.5291 tig 6001 read 3371 pos 7122-12316 IS confused by 5' edge to read 347513 - best edge read 40750 len 1526 erate 0.0328 score 1475.95 - alt edge len 1521 erate 0.0415 score 1457.88 - absdiff 18.07 percdiff 1.2318 tig 6001 read 40750 pos 10790-14305 IS confused by 3' edge to read 196107 - best edge read 3371 len 1547 erate 0.0328 score 1496.26 - alt edge len 975 erate 0.0433 score 932.78 - absdiff 563.48 percdiff 46.3949 saved region 10789:12348 - 4 best edges are potentially confused break tig 6001 into up to 3 pieces: 0 10289 unique (length 10289) 10289 12848 repeat (length 2559) 12848 14461 unique (length 1613) Creating Unitig 91206 Creating Unitig 91207 Creating Unitig 91208 For tig 6001 unique region 0 10289 - 0/ 13 reads repeat/unique - unitig 91206 created. For tig 6001 repeat region 10289 12848 - 4/ 0 reads repeat/unique - unitig 91208 created. For tig 6001 unique region 12848 14461 - 0/ 2 reads repeat/unique - unitig 91207 created. Annotating repeats in reads for tig 6003/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 5:3462 - contained in read 325919 0- 7273 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6004/90584. Annotated with 61 overlaps. Scan reads to discard spanned repeats. discard region 12449:13095 - contained in read 125818 7072- 13099 thickest edges to the repeat regions: saved region 7054:11535 - closest 5' read 411692 ( +4300) 2754:9581 ( -1954) saved region 7054:11535 - closest 3' read 125818 ( -18) 7072:13099 ( +1564) search for confused edges: discard region 7054:11535 - no confusion in best edges Annotating repeats in reads for tig 6006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6009/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6012/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 0:2737 - contained in read 414041 0- 5808 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6015/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6020/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5081:0 - contained in read 328787 0- 6698 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6022/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3521:5144 - contained in read 415840 73- 9889 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6026/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6028/90584. Annotated with 100 overlaps. Scan reads to discard spanned repeats. discard region 0:3463 - contained in read 467511 0- 6307 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6032/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:4897 - contained in read 522526 0- 7295 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6038/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6041/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6047/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5287:6131 - contained in read 159704 241- 6131 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6048/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 15313:17365 - contained in read 86246 6714- 17742 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6055/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6056/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6057/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6065/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:6746 - contained in read 337319 0- 8886 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6071/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1016 - contained in read 339211 0- 5793 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6077/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6084/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6087/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1186:1957 - contained in read 343197 0- 6648 discard region 3174:4805 - contained in read 343197 0- 6648 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6099/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6101/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5079:4021 - contained in read 430079 0- 6247 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6113/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6116/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 34:4731 - contained in read 152030 0- 5590 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6121/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 543:1682 - contained in read 442042 0- 5778 thickest edges to the repeat regions: saved region 6582:8807 - closest 5' read 189710 ( +2648) 3934:8799 ( -8) saved region 6582:8807 - closest 3' read 349283 ( -1534) 8116:9768 ( +961) search for confused edges: discard region 6582:8807 - no confusion in best edges Annotating repeats in reads for tig 6122/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 727:3293 - closest read 349440 ( +727) 0:3714 ( +421) (contained) saved region 727:3293 - closest read 349439 ( +727) 0:3300 ( +7) (contained) saved region 727:3293 - closest 5' read 349440 ( +727) 0:3714 ( +421) saved region 727:3293 - closest 3' read 349440 ( +727) 0:3714 ( +421) search for confused edges: discard region 727:3293 - no confusion in best edges Annotating repeats in reads for tig 6124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6126/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 3421:4062 - contained in read 145291 6- 5106 discard region 4368:5233 - contained in read 445177 481- 6573 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6130/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6135/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 932:1835 - contained in read 353924 0- 2652 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6140/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6141/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 522:0 - contained in read 50326 0- 5413 discard region 4869:5414 - contained in read 50323 123- 8146 discard region 14474:15465 - contained in read 355270 13471- 16114 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6142/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5558:6509 - closest read 519645 ( +5558) 0:6572 ( +63) (contained) saved region 5558:6509 - closest read 99683 ( +4671) 887:6800 ( +291) (contained) saved region 5558:6509 - closest read 519646 ( +3585) 1973:6525 ( +16) (contained) saved region 5558:6509 - closest read 253922 ( +3491) 2067:6517 ( +8) (contained) saved region 5558:6509 - closest read 99682 ( +3410) 2148:6927 ( +418) (contained) saved region 5558:6509 - closest read 285592 ( +2683) 2875:6526 ( +17) (contained) saved region 5558:6509 - closest 5' read 99682 ( +3410) 2148:6927 ( +418) saved region 5558:6509 - closest 3' read 519645 ( +5558) 0:6572 ( +63) search for confused edges: discard region 5558:6509 - no confusion in best edges Annotating repeats in reads for tig 6143/90584. Annotated with 120 overlaps. Scan reads to discard spanned repeats. discard region 0:3025 - contained in read 373452 0- 6509 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6144/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6147/90584. Annotated with 54 overlaps. Scan reads to discard spanned repeats. discard region 10349:11502 - contained in read 452193 5183- 12469 thickest edges to the repeat regions: saved region 4187:9963 - closest 5' read 417829 ( +4178) 9:8478 ( -1485) saved region 4187:9963 - closest 3' read 452193 ( -996) 5183:12469 ( +2506) search for confused edges: discard region 4187:9963 - no confusion in best edges Annotating repeats in reads for tig 6153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6159/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 31:1278 - contained in read 441443 0- 6254 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6169/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 614:8087 - closest 5' read 361471 ( +597) 17:6977 ( -1110) saved region 614:8087 - closest 3' read 347198 ( -176) 790:8094 ( +7) search for confused edges: tig 6169 read 361473 pos 0-6970 NOT confused by 3' edge to read 97815 - best edge read 347198 len 6180 erate 0.0314 score 5985.95 - alt edge len 3439 erate 0.0193 score 3372.63 - absdiff 2613.32 percdiff 55.8487 tig 6169 read 361473 pos 0-6970 NOT confused by 3' edge to read 231839 - best edge read 347198 len 6180 erate 0.0314 score 5985.95 - alt edge len 3496 erate 0.0182 score 3432.37 - absdiff 2553.58 percdiff 54.2257 tig 6169 read 361473 pos 0-6970 NOT confused by 3' edge to read 280575 - best edge read 347198 len 6180 erate 0.0314 score 5985.95 - alt edge len 3075 erate 0.0153 score 3027.95 - absdiff 2958.00 percdiff 65.6319 discard region 614:8087 - no confusion in best edges Annotating repeats in reads for tig 6170/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 7501:8233 - contained in read 360547 2094- 8237 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6174/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6179/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6182/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6112:5412 - contained in read 363604 0- 6063 discard region 6115:5465 - contained in read 363604 0- 6063 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6183/90584. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 2652:5862 - contained in read 475212 14- 7933 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6186/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6189/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1263:4479 - contained in read 388967 2- 7187 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6193/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6203/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6211/90584. Annotated with 170 overlaps. Scan reads to discard spanned repeats. discard region 3455:7161 - contained in read 369767 203- 7161 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6212/90584. Annotated with 596 overlaps. Scan reads to discard spanned repeats. discard region 609:4121 - contained in read 369845 0- 5644 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6221/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2281:5892 - contained in read 371351 0- 5895 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6227/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2485:6157 - closest read 235362 ( +1639) 846:6206 ( +49) (contained) saved region 2485:6157 - closest read 473762 ( +341) 2144:7456 ( +1299) (contained) saved region 2485:6157 - closest read 129348 ( +0) 2485:6198 ( +41) (contained) saved region 2485:6157 - closest 5' read 473762 ( +341) 2144:7456 ( +1299) saved region 2485:6157 - closest 3' read 235362 ( +1639) 846:6206 ( +49) search for confused edges: discard region 2485:6157 - no confusion in best edges Annotating repeats in reads for tig 6229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6234/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 4811:9878 - contained in read 410579 3877- 10517 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6237/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7070:6562 - contained in read 243327 857- 7353 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6238/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 7:1768 - contained in read 374027 0- 5604 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6239/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6242/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6243/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6251/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6261/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2:5372 - contained in read 83467 0- 6332 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6277/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9:7048 - closest read 482177 ( +9) 0:7233 ( +185) (contained) saved region 9:7048 - closest 5' read 482177 ( +9) 0:7233 ( +185) saved region 9:7048 - closest 3' read 482177 ( +9) 0:7233 ( +185) search for confused edges: discard region 9:7048 - no confusion in best edges Annotating repeats in reads for tig 6286/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5948:9737 - closest read 316170 ( +88) 5860:10515 ( +778) (contained) saved region 5948:9737 - closest read 169035 ( +26) 5922:10320 ( +583) (contained) saved region 5948:9737 - closest read 47268 ( +2) 5946:10551 ( +814) (contained) saved region 5948:9737 - closest 5' read 47268 ( +2) 5946:10551 ( +814) saved region 5948:9737 - closest 3' read 316170 ( +88) 5860:10515 ( +778) search for confused edges: discard region 5948:9737 - no confusion in best edges Annotating repeats in reads for tig 6288/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6294/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6811:7695 - contained in read 385761 3507- 7976 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6299/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5348:3820 - contained in read 386022 0- 7866 discard region 5356:3955 - contained in read 386022 0- 7866 discard region 9563:5051 - contained in read 386022 0- 7866 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6302/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6371:6937 - contained in read 387635 7- 6937 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6304/90584. Annotated with 59 overlaps. Scan reads to discard spanned repeats. discard region 3429:6161 - contained in read 451133 756- 6166 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6313/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 6060:8129 - contained in read 455099 4520- 8341 thickest edges to the repeat regions: saved region 4519:5525 - closest 5' read 389950 ( +4473) 46:5253 ( -272) saved region 4519:5525 - closest 3' read 455099 ( -1) 4520:8341 ( +2816) search for confused edges: tig 6313 read 389951 pos 38-5239 IS confused by 3' edge to read 367675 - best edge read 455099 len 719 erate 0.0417 score 689.02 - alt edge len 638 erate 0.0392 score 612.99 - absdiff 76.03 percdiff 11.6785 tig 6313 read 389951 pos 38-5239 IS confused by 3' edge to read 367679 - best edge read 455099 len 719 erate 0.0417 score 689.02 - alt edge len 648 erate 0.0370 score 624.02 - absdiff 64.99 percdiff 9.8997 saved region 4519:5525 - 2 best edges are potentially confused break tig 6313 into up to 3 pieces: 0 4019 unique (length 4019) 4019 6025 repeat (length 2006) 6025 8341 unique (length 2316) Creating Unitig 91209 Creating Unitig 91210 Creating Unitig 91211 For tig 6313 unique region 0 4019 - 0/ 7 reads repeat/unique - unitig 91209 created. For tig 6313 repeat region 4019 6025 - 1/ 0 reads repeat/unique - unitig 91211 created. For tig 6313 unique region 6025 8341 - 0/ 8 reads repeat/unique - unitig 91210 created. Annotating repeats in reads for tig 6315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6316/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6319/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6320/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 930:2273 - contained in read 391780 0- 5494 discard region 3424:5805 - contained in read 391779 118- 5805 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6322/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6323/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6330/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 0:2229 - contained in read 59780 0- 6811 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6331/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6334/90584. Annotated with 303 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 60:8669 - closest 5' read 387618 ( +60) 0:7703 ( -966) saved region 60:8669 - closest 3' read 37549 ( -1936) 1996:8710 ( +41) search for confused edges: tig 6334 read 299681 pos 2115-9179 IS confused by 5' edge to read 82195 - best edge read 387618 len 5588 erate 0.0405 score 5361.69 - alt edge len 4764 erate 0.0227 score 4655.86 - absdiff 705.83 percdiff 14.0919 tig 6334 read 299681 pos 2115-9179 NOT confused by 5' edge to read 358324 - best edge read 387618 len 5588 erate 0.0405 score 5361.69 - alt edge len 2730 erate 0.0114 score 2698.88 - absdiff 2662.81 percdiff 66.0700 saved region 60:8669 - 1 best edges are potentially confused break tig 6334 into up to 2 pieces: 0 9169 repeat (length 9169) 9169 9420 unique (length 251) Creating Unitig 91212 Creating Unitig 91213 For tig 6334 repeat region 0 9169 - 38/ 0 reads repeat/unique - unitig 91212 created. For tig 6334 unique region 9169 9420 - 0/ 7 reads repeat/unique - unitig 91213 created. Annotating repeats in reads for tig 6335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6350/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6357/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9070:7415 - contained in read 405253 0- 10252 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6362/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2590:5773 - contained in read 402985 0- 6464 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6363/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6365/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3043:1872 - contained in read 403618 0- 3015 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6372/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 3728:6008 - contained in read 404954 13- 6511 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6378/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4709:5382 - contained in read 353701 0- 10413 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6388/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6393/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6397/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 17337:18291 - closest read 433932 ( +0) 17337:24355 ( +6064) (contained) saved region 17337:18291 - closest 5' read 433932 ( +0) 17337:24355 ( +6064) saved region 17337:18291 - closest 3' read 433932 ( +0) 17337:24355 ( +6064) search for confused edges: discard region 17337:18291 - no confusion in best edges Annotating repeats in reads for tig 6401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6403/90584. Annotated with 250 overlaps. Scan reads to discard spanned repeats. discard region 4995:8271 - contained in read 411088 1041- 9370 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6405/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 0:4063 - contained in read 356699 0- 7378 discard region 8080:10889 - contained in read 411288 5948- 12336 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6417/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6421/90584. Annotated with 258 overlaps. Scan reads to discard spanned repeats. discard region 4700:5985 - contained in read 414386 2221- 8947 thickest edges to the repeat regions: saved region 1726:4669 - closest 5' read 81370 ( +1726) 0:4644 ( -25) saved region 1726:4669 - closest 3' read 25280 ( -52) 1778:5991 ( +1322) search for confused edges: tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 36821 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 2409 erate 0.0379 score 2317.70 - absdiff 455.98 percdiff 17.9117 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 43611 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 759 erate 0.0395 score 729.02 - absdiff 2044.65 percdiff 116.7476 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 120433 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 1568 erate 0.0439 score 1499.16 - absdiff 1274.51 percdiff 59.6563 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 120434 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 1641 erate 0.0445 score 1567.98 - absdiff 1205.70 percdiff 55.5410 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 184649 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 2123 erate 0.0404 score 2037.23 - absdiff 736.44 percdiff 30.6156 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 200277 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 2171 erate 0.0399 score 2084.38 - absdiff 689.30 percdiff 28.3775 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 200278 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 2291 erate 0.0320 score 2217.69 - absdiff 555.99 percdiff 22.2779 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 225280 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 2120 erate 0.0319 score 2052.37 - absdiff 721.30 percdiff 29.8921 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 225281 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 1968 erate 0.0400 score 1889.28 - absdiff 884.39 percdiff 37.9328 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 238832 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 1858 erate 0.0332 score 1796.31 - absdiff 977.36 percdiff 42.7730 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 289935 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 2410 erate 0.0330 score 2330.47 - absdiff 443.20 percdiff 17.3665 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 345008 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 2506 erate 0.0396 score 2406.76 - absdiff 366.91 percdiff 14.1653 tig 6421 read 81370 pos 0-4644 IS confused by 3' edge to read 443010 - best edge read 25280 len 2863 erate 0.0312 score 2773.67 - alt edge len 1892 erate 0.0324 score 1830.70 - absdiff 942.98 percdiff 40.9600 tig 6421 read 25280 pos 1778-5991 IS confused by 3' edge to read 184649 - best edge read 81370 len 2866 erate 0.0342 score 2767.98 - alt edge len 768 erate 0.0446 score 733.75 - absdiff 2034.24 percdiff 116.1846 tig 6421 read 25280 pos 1778-5991 IS confused by 3' edge to read 361754 - best edge read 81370 len 2866 erate 0.0342 score 2767.98 - alt edge len 1731 erate 0.0277 score 1683.05 - absdiff 1084.93 percdiff 48.7496 saved region 1726:4669 - 15 best edges are potentially confused break tig 6421 into up to 3 pieces: 0 1226 unique (length 1226) 1226 5169 repeat (length 3943) 5169 8950 unique (length 3781) Creating Unitig 91214 Creating Unitig 91215 Creating Unitig 91216 For tig 6421 unique region 0 1226 - 0/ 2 reads repeat/unique - unitig 91214 created. For tig 6421 repeat region 1226 5169 - 6/ 0 reads repeat/unique - unitig 91216 created. For tig 6421 unique region 5169 8950 - 0/ 8 reads repeat/unique - unitig 91215 created. Annotating repeats in reads for tig 6423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6432/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:2368 - contained in read 278022 0- 3879 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6433/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6551:10840 - closest read 226705 ( +2358) 4193:10854 ( +14) (contained) saved region 6551:10840 - closest 5' read 226705 ( +2358) 4193:10854 ( +14) saved region 6551:10840 - closest 3' read 226705 ( +2358) 4193:10854 ( +14) search for confused edges: discard region 6551:10840 - no confusion in best edges Annotating repeats in reads for tig 6436/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6437/90584. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 1638:5904 - contained in read 417674 13- 5909 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6449/90584. Annotated with 174 overlaps. Scan reads to discard spanned repeats. discard region 2955:4846 - contained in read 239386 153- 6330 thickest edges to the repeat regions: saved region 5085:10590 - closest 5' read 138388 ( +3022) 2063:8197 ( -2393) saved region 5085:10590 - closest 3' read 224657 ( -97) 5182:10590 ( +0) search for confused edges: tig 6449 read 138388 pos 2063-8197 IS confused by 5' edge to read 18587 - best edge read 224657 len 3015 erate 0.0347 score 2910.38 - alt edge len 1473 erate 0.0315 score 1426.60 - absdiff 1483.78 percdiff 68.4245 saved region 5085:10590 - 1 best edges are potentially confused break tig 6449 into up to 2 pieces: 0 4585 unique (length 4585) 4585 10590 repeat (length 6005) Creating Unitig 91217 Creating Unitig 91218 For tig 6449 unique region 0 4585 - 0/ 17 reads repeat/unique - unitig 91217 created. For tig 6449 repeat region 4585 10590 - 5/ 0 reads repeat/unique - unitig 91218 created. Annotating repeats in reads for tig 6450/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 0:4297 - contained in read 332587 0- 4998 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6451/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6455/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 782:7109 - closest 5' read 158552 ( +729) 53:7047 ( -62) saved region 782:7109 - closest 3' read 450978 ( -435) 1217:7109 ( +0) search for confused edges: tig 6455 read 158552 pos 53-7047 IS confused by 5' edge to read 54636 - best edge read 450978 len 5830 erate 0.0161 score 5736.14 - alt edge len 4509 erate 0.0240 score 4400.78 - absdiff 1335.35 percdiff 26.3463 tig 6455 read 158552 pos 53-7047 NOT confused by 5' edge to read 456381 - best edge read 450978 len 5830 erate 0.0161 score 5736.14 - alt edge len 3378 erate 0.0172 score 3319.90 - absdiff 2416.24 percdiff 53.3620 tig 6455 read 158552 pos 53-7047 NOT confused by 5' edge to read 456382 - best edge read 450978 len 5830 erate 0.0161 score 5736.14 - alt edge len 3368 erate 0.0184 score 3306.03 - absdiff 2430.11 percdiff 53.7506 tig 6455 read 450978 pos 1217-7109 IS confused by 5' edge to read 489313 - best edge read 158552 len 5889 erate 0.0161 score 5794.19 - alt edge len 5054 erate 0.0143 score 4981.73 - absdiff 812.46 percdiff 15.0792 saved region 782:7109 - 2 best edges are potentially confused break tig 6455 into up to 2 pieces: 0 282 unique (length 282) 282 7109 repeat (length 6827) Creating Unitig 91219 Creating Unitig 91220 For tig 6455 unique region 0 282 - 0/ 6 reads repeat/unique - unitig 91219 created. For tig 6455 repeat region 282 7109 - 5/ 0 reads repeat/unique - unitig 91220 created. Annotating repeats in reads for tig 6465/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3036:3565 - contained in read 490192 551- 7317 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6471/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:7887 - closest 5' read 502414 ( +0) 0:5218 ( -2669) saved region 0:7887 - closest 3' read 423618 ( -3525) 3525:9686 ( +1799) search for confused edges: tig 6471 read 414016 pos 3587-6443 IS confused by 5' edge to read 116977 - best edge read 502414 len 1631 erate 0.0264 score 1587.94 - alt edge len 778 erate 0.0271 score 756.92 - absdiff 831.03 percdiff 70.8807 saved region 0:7887 - 1 best edges are potentially confused break tig 6471 into up to 2 pieces: 0 8387 repeat (length 8387) 8387 9686 unique (length 1299) Creating Unitig 91221 Creating Unitig 91222 For tig 6471 repeat region 0 8387 - 20/ 0 reads repeat/unique - unitig 91221 created. For tig 6471 unique region 8387 9686 - 0/ 6 reads repeat/unique - unitig 91222 created. Annotating repeats in reads for tig 6475/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2304:4763 - contained in read 455914 0- 5378 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6477/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 5806:6864 - contained in read 233978 0- 11723 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6497/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6501/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 4489:7849 - contained in read 518870 135- 9781 discard region 8171:10941 - contained in read 420459 3683- 10941 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6508/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6511/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3342:4627 - contained in read 432493 0- 7094 discard region 7796:8719 - contained in read 445760 972- 8719 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6518/90584. Annotated with 117 overlaps. Scan reads to discard spanned repeats. discard region 1694:12006 - contained in read 428251 1- 12006 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6532/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6539/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 2922:4747 - contained in read 437014 0- 5465 discard region 7224:10713 - contained in read 379382 4882- 11597 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6551/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3802:5606 - contained in read 33544 541- 5606 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6554/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:2874 - contained in read 440034 0- 7408 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6562/90584. Annotated with 193 overlaps. Scan reads to discard spanned repeats. discard region 2787:4657 - contained in read 441561 0- 6734 thickest edges to the repeat regions: saved region 6141:10593 - closest 5' read 449611 ( +1) 6140:10551 ( -42) saved region 6141:10593 - closest 3' read 490135 ( -2459) 8600:10709 ( +116) search for confused edges: tig 6562 read 68923 pos 5978-10512 IS confused by 3' edge to read 37446 - best edge read 490135 len 1912 erate 0.0288 score 1856.93 - alt edge len 954 erate 0.0285 score 926.81 - absdiff 930.12 percdiff 66.8253 saved region 6141:10593 - 1 best edges are potentially confused break tig 6562 into up to 2 pieces: 0 5641 unique (length 5641) 5641 10709 repeat (length 5068) Creating Unitig 91223 Creating Unitig 91224 For tig 6562 unique region 0 5641 - 0/ 4 reads repeat/unique - unitig 91223 created. For tig 6562 repeat region 5641 10709 - 30/ 0 reads repeat/unique - unitig 91224 created. Annotating repeats in reads for tig 6565/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 501:0 - contained in read 242721 0- 7819 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6573/90584. Annotated with 123 overlaps. Scan reads to discard spanned repeats. discard region 0:11584 - contained in read 391078 0- 13885 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6578/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4517:6647 - closest read 388231 ( +2839) 1678:6649 ( +2) (contained) saved region 4517:6647 - closest read 145725 ( +2112) 2405:7010 ( +363) (contained) saved region 4517:6647 - closest read 224177 ( +301) 4216:7419 ( +772) (contained) saved region 4517:6647 - closest 5' read 224177 ( +301) 4216:7419 ( +772) saved region 4517:6647 - closest 3' read 388231 ( +2839) 1678:6649 ( +2) search for confused edges: discard region 4517:6647 - no confusion in best edges Annotating repeats in reads for tig 6580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6585/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6590/90584. Annotated with 72 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:7114 - closest 5' read 435728 ( +0) 0:6295 ( -819) saved region 0:7114 - closest 3' read 448359 ( -291) 291:7114 ( +0) search for confused edges: tig 6590 read 448362 pos 16-7085 NOT confused by 3' edge to read 222791 - best edge read 435728 len 6279 erate 0.0217 score 6142.75 - alt edge len 1201 erate 0.0192 score 1177.94 - absdiff 4964.80 percdiff 135.6377 tig 6590 read 448362 pos 16-7085 NOT confused by 3' edge to read 499562 - best edge read 435728 len 6279 erate 0.0217 score 6142.75 - alt edge len 1104 erate 0.0395 score 1060.39 - absdiff 5082.35 percdiff 141.1150 discard region 0:7114 - no confusion in best edges Annotating repeats in reads for tig 6603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6605/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3030:4793 - contained in read 451837 0- 6193 discard region 6284:5595 - contained in read 451837 0- 6193 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6608/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 663:0 - contained in read 336771 0- 2686 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6609/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 414:1847 - contained in read 452902 0- 6853 discard region 5634:7017 - contained in read 452901 814- 7017 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6614/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6627/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8817:4486 - contained in read 312647 12- 4993 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6629/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3441:8539 - contained in read 126937 1191- 8539 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6630/90584. Annotated with 150 overlaps. Scan reads to discard spanned repeats. discard region 2741:7068 - contained in read 456142 0- 9848 discard region 8468:12756 - contained in read 95969 2771- 12756 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6643/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6659/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6668/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:1359 - contained in read 495295 0- 7712 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6673/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3267:5016 - closest read 364921 ( +3267) 0:5024 ( +8) (contained) saved region 3267:5016 - closest 5' read 364921 ( +3267) 0:5024 ( +8) saved region 3267:5016 - closest 3' read 364921 ( +3267) 0:5024 ( +8) search for confused edges: discard region 3267:5016 - no confusion in best edges Annotating repeats in reads for tig 6674/90584. Annotated with 487 overlaps. Scan reads to discard spanned repeats. discard region 3692:8128 - contained in read 26388 935- 8128 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6681/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3709:8104 - closest read 390085 ( +3003) 706:8108 ( +4) (contained) saved region 3709:8104 - closest read 39226 ( +191) 3518:10058 ( +1954) (contained) saved region 3709:8104 - closest 5' read 39226 ( +191) 3518:10058 ( +1954) saved region 3709:8104 - closest 3' read 390085 ( +3003) 706:8108 ( +4) search for confused edges: discard region 3709:8104 - no confusion in best edges Annotating repeats in reads for tig 6682/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6683/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6692/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5876:8863 - closest 5' read 307737 ( +5086) 790:6686 ( -2177) saved region 5876:8863 - closest 3' read 471 ( -1) 5877:10432 ( +1569) search for confused edges: discard region 5876:8863 - no confusion in best edges Annotating repeats in reads for tig 6698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6701/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 12:649 - contained in read 467894 0- 4396 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6703/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5194:6814 - contained in read 281940 1061- 6814 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6710/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2185:2763 - contained in read 471092 0- 5788 discard region 12577:13155 - contained in read 502795 5437- 13155 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6734/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 15792:12202 - contained in read 476500 4386- 15805 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6761/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 2563:6581 - contained in read 481418 0- 6581 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6799/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 942:5711 - contained in read 32112 0- 9885 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6804/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:4327 - contained in read 492520 0- 5114 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6815/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:4417 - contained in read 493806 0- 6078 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6823/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7077:10433 - closest 5' read 438719 ( +1) 7076:9936 ( -497) saved region 7077:10433 - closest 3' read 408582 ( -306) 7383:12166 ( +1733) search for confused edges: discard region 7077:10433 - no confusion in best edges Annotating repeats in reads for tig 6838/90584. Annotated with 2003 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2781:26355 - closest 5' read 397958 ( +0) 2781:15467 (-10888) saved region 2781:26355 - closest 3' read 506519 ( -8510) 11291:26795 ( +440) search for confused edges: discard region 2781:26355 - no confusion in best edges Annotating repeats in reads for tig 6857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6869/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:972 - contained in read 293262 0- 7704 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6870/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 3037:7097 - contained in read 201066 1321- 7097 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6885/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2221:5417 - closest read 507221 ( +11) 2210:6580 ( +1163) (contained) saved region 2221:5417 - closest 5' read 507221 ( +11) 2210:6580 ( +1163) saved region 2221:5417 - closest 3' read 507221 ( +11) 2210:6580 ( +1163) search for confused edges: discard region 2221:5417 - no confusion in best edges Annotating repeats in reads for tig 6888/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 1680:5556 - contained in read 507565 34- 5556 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6896/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 714:4300 - contained in read 509966 0- 5894 discard region 4869:7740 - contained in read 331448 585- 7740 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6913/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2343:3657 - contained in read 513424 0- 6517 discard region 5265:7491 - contained in read 273299 1896- 7513 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6926/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 25:2435 - closest read 108497 ( +25) 0:2868 ( +433) (contained) saved region 25:2435 - closest 5' read 108497 ( +25) 0:2868 ( +433) saved region 25:2435 - closest 3' read 108497 ( +25) 0:2868 ( +433) search for confused edges: discard region 25:2435 - no confusion in best edges Annotating repeats in reads for tig 6931/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6934/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 6065:9362 - contained in read 279920 4056- 13517 thickest edges to the repeat regions: saved region 4002:6099 - closest read 241334 ( +3209) 793:6166 ( +67) (contained) saved region 4002:6099 - closest 5' read 241334 ( +3209) 793:6166 ( +67) saved region 4002:6099 - closest 3' read 241334 ( +3209) 793:6166 ( +67) search for confused edges: discard region 4002:6099 - no confusion in best edges Annotating repeats in reads for tig 6938/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2958:5852 - contained in read 517369 22- 5852 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6942/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 601:5 - contained in read 394491 0- 4339 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6947/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6957/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:2249 - contained in read 521158 0- 6627 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 6966/90584. Annotated with 337 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:12048 - closest 5' read 394261 ( +0) 0:11007 ( -1041) saved region 0:12048 - closest 3' read 523580 ( -2883) 2883:13152 ( +1104) search for confused edges: discard region 0:12048 - no confusion in best edges Annotating repeats in reads for tig 6993/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 5097:8113 - contained in read 421138 7- 8131 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7003/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5391:10205 - contained in read 525118 4705- 11486 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7006/90584. Annotated with 117 overlaps. Scan reads to discard spanned repeats. discard region 0:1977 - contained in read 449354 0- 6441 discard region 2185:4268 - contained in read 449354 0- 6441 discard region 4354:6522 - contained in read 86210 2187- 13674 discard region 6684:8757 - contained in read 86210 2187- 13674 thickest edges to the repeat regions: saved region 8886:13197 - closest read 86210 ( +6699) 2187:13674 ( +477) (contained) saved region 8886:13197 - closest read 86212 ( +6681) 2205:13685 ( +488) (contained) saved region 8886:13197 - closest 5' read 86212 ( +6681) 2205:13685 ( +488) saved region 8886:13197 - closest 3' read 86210 ( +6699) 2187:13674 ( +477) search for confused edges: discard region 8886:13197 - no confusion in best edges Annotating repeats in reads for tig 7018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7019/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7024/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7026/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7028/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7029/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1943:5531 - contained in read 134389 0- 6659 discard region 7466:8450 - contained in read 1682 4870- 10994 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7031/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7032/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7033/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7037/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7038/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7042/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7047/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7052/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7053/90584. Annotated with 88 overlaps. Scan reads to discard spanned repeats. discard region 841:6013 - contained in read 3918 0- 8508 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7055/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7056/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7057/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7058/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7059/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 112:3348 - closest read 303220 ( +105) 7:6088 ( +2740) (contained) saved region 112:3348 - closest 5' read 303220 ( +105) 7:6088 ( +2740) saved region 112:3348 - closest 3' read 303220 ( +105) 7:6088 ( +2740) search for confused edges: discard region 112:3348 - no confusion in best edges Annotating repeats in reads for tig 7060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7062/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7063/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7065/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7071/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7075/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2159:7314 - closest 5' read 350723 ( +92) 2067:7185 ( -129) saved region 2159:7314 - closest 3' read 5380 ( -51) 2210:7502 ( +188) search for confused edges: discard region 2159:7314 - no confusion in best edges Annotating repeats in reads for tig 7076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7077/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7079/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7083/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7499:8741 - contained in read 21217 5556- 10878 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7084/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5078:5753 - contained in read 6789 292- 6080 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7086/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5465:7818 - contained in read 354152 3239- 9424 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7088/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7089/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 1664:5175 - contained in read 7242 0- 7065 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7092/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7023:8173 - closest read 521461 ( +0) 7023:16070 ( +7897) (contained) saved region 7023:8173 - closest 5' read 521461 ( +0) 7023:16070 ( +7897) saved region 7023:8173 - closest 3' read 521461 ( +0) 7023:16070 ( +7897) search for confused edges: discard region 7023:8173 - no confusion in best edges Annotating repeats in reads for tig 7094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7095/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2606:3686 - contained in read 107288 318- 4392 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7096/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6041:7387 - contained in read 7927 0- 8717 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7099/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1:896 - contained in read 8295 0- 6851 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7101/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3478:5162 - closest read 481177 ( +70) 3408:9102 ( +3940) (contained) saved region 3478:5162 - closest read 481176 ( +39) 3439:9134 ( +3972) (contained) saved region 3478:5162 - closest 5' read 481176 ( +39) 3439:9134 ( +3972) saved region 3478:5162 - closest 3' read 481177 ( +70) 3408:9102 ( +3940) saved region 7932:9111 - closest read 481176 ( +4493) 3439:9134 ( +23) (contained) saved region 7932:9111 - closest read 507541 ( +0) 7932:10482 ( +1371) (contained) saved region 7932:9111 - closest 5' read 507541 ( +0) 7932:10482 ( +1371) saved region 7932:9111 - closest 3' read 481176 ( +4493) 3439:9134 ( +23) search for confused edges: discard region 3478:5162 - no confusion in best edges discard region 7932:9111 - no confusion in best edges Annotating repeats in reads for tig 7102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7103/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7105/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7108/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7110/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7112/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7113/90584. Annotated with 49 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5665:8299 - closest 5' read 481465 ( +5085) 580:8268 ( -31) saved region 5665:8299 - closest 3' read 112264 ( -453) 6118:11649 ( +3350) search for confused edges: discard region 5665:8299 - no confusion in best edges Annotating repeats in reads for tig 7114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7118/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7120/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7121/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2569:3612 - contained in read 31529 0- 8665 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7122/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3677:4573 - closest read 11288 ( +15) 3662:9238 ( +4665) (contained) saved region 3677:4573 - closest read 11286 ( +7) 3670:9286 ( +4713) (contained) saved region 3677:4573 - closest 5' read 11286 ( +7) 3670:9286 ( +4713) saved region 3677:4573 - closest 3' read 11288 ( +15) 3662:9238 ( +4665) search for confused edges: discard region 3677:4573 - no confusion in best edges Annotating repeats in reads for tig 7123/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5095:5735 - contained in read 14159 1595- 8260 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7124/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4347:5575 - contained in read 382938 0- 10403 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7126/90584. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 300:1641 - contained in read 11575 0- 5633 discard region 4850:5960 - contained in read 309877 4046- 6469 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7127/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3238:5424 - contained in read 318588 861- 6123 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7130/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7131/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5857:6497 - contained in read 301227 5144- 8430 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7134/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7135/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7138/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7139/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7140/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7144/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 0:1452 - contained in read 13407 0- 6018 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7145/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3192:6596 - contained in read 73341 1555- 12035 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7146/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 14572:15496 - contained in read 344250 4612- 18663 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7148/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7150/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7154/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7155/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7158/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7160/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7161/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7163/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4387:3867 - contained in read 15749 0- 6945 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7167/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7169/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8525:9754 - contained in read 336087 2245- 9754 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7176/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6001:8270 - closest 5' read 107194 ( +5860) 141:7504 ( -766) saved region 6001:8270 - closest 3' read 353439 ( -556) 6557:13392 ( +5122) search for confused edges: discard region 6001:8270 - no confusion in best edges Annotating repeats in reads for tig 7177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7181/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1016:2273 - contained in read 17580 0- 5556 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7184/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7186/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7187/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2074:2598 - contained in read 29945 0- 4104 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7189/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7193/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7196/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1850:7122 - closest 5' read 462840 ( +1850) 0:6375 ( -747) saved region 1850:7122 - closest 3' read 133611 ( -3906) 5756:15006 ( +7884) search for confused edges: discard region 1850:7122 - no confusion in best edges Annotating repeats in reads for tig 7197/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 2310:4452 - contained in read 19266 0- 5918 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7200/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7201/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 7660:9107 - contained in read 508583 3167- 10754 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7202/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1947:3321 - contained in read 352884 512- 3876 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7203/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7205/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7206/90584. Annotated with 77 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 11261:14697 - closest 5' read 288947 ( +14) 11247:13490 ( -1207) saved region 11261:14697 - closest 3' read 79571 ( -69) 11330:20256 ( +5559) search for confused edges: tig 7206 read 371677 pos 5637-13414 IS confused by 3' edge to read 283645 - best edge read 79571 len 2084 erate 0.0245 score 2032.94 - alt edge len 1600 erate 0.0301 score 1551.84 - absdiff 481.10 percdiff 26.8414 tig 7206 read 371677 pos 5637-13414 IS confused by 3' edge to read 283646 - best edge read 79571 len 2084 erate 0.0245 score 2032.94 - alt edge len 1583 erate 0.0323 score 1531.87 - absdiff 501.07 percdiff 28.1122 saved region 11261:14697 - 2 best edges are potentially confused break tig 7206 into up to 3 pieces: 0 10761 unique (length 10761) 10761 15197 repeat (length 4436) 15197 20256 unique (length 5059) Creating Unitig 91225 Creating Unitig 91226 Creating Unitig 91227 For tig 7206 unique region 0 10761 - 0/ 20 reads repeat/unique - unitig 91225 created. For tig 7206 repeat region 10761 15197 - 27/ 0 reads repeat/unique - unitig 91226 created. For tig 7206 unique region 15197 20256 - 0/ 11 reads repeat/unique - unitig 91227 created. Annotating repeats in reads for tig 7207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7211/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7212/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7213/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7214/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7216/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7217/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 3969:5609 - contained in read 439968 0- 8065 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7223/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7225/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7229/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6403:4227 - contained in read 23760 0- 7499 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7230/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7232/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 8744:11622 - contained in read 386215 6550- 16044 discard region 13035:15073 - contained in read 386215 6550- 16044 discard region 15483:16046 - contained in read 348978 12484- 16046 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7233/90584. Annotated with 37 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2864:8236 - closest 5' read 24075 ( +4) 2860:6978 ( -1258) saved region 2864:8236 - closest 3' read 297739 ( -3380) 6244:12974 ( +4738) search for confused edges: discard region 2864:8236 - no confusion in best edges Annotating repeats in reads for tig 7234/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7237/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7239/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7242/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7244/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7245/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7248/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7250/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7598:6835 - contained in read 80061 1363- 7597 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7253/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. discard region 3049:7290 - contained in read 27357 0- 8834 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7256/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7257/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 683:2101 - contained in read 27657 0- 5809 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7260/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7261/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6061:5466 - contained in read 5333 0- 6198 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7262/90584. Annotated with 75 overlaps. Scan reads to discard spanned repeats. discard region 0:5378 - contained in read 83428 0- 6454 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7263/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5159:5864 - closest 5' read 506085 ( +4560) 599:5849 ( -15) saved region 5159:5864 - closest 3' read 496585 ( -113) 5272:6664 ( +800) search for confused edges: tig 7263 read 105426 pos 5279-18878 IS confused by 3' edge to read 8347 - best edge read 506085 len 574 erate 0.0439 score 548.80 - alt edge len 585 erate 0.0120 score 577.98 - absdiff 29.18 percdiff 5.1791 saved region 5159:5864 - 1 best edges are potentially confused break tig 7263 into up to 3 pieces: 0 4659 unique (length 4659) 4659 6364 repeat (length 1705) 6364 18878 unique (length 12514) Creating Unitig 91228 Creating Unitig 91229 For tig 7263 unique region 0 4659 - 0/ 6 reads repeat/unique - unitig 91228 created. For tig 7263 repeat region 4659 6364 - 0/ 0 repeat/unique reads - no new unitig created. For tig 7263 unique region 6364 18878 - 0/ 3 reads repeat/unique - unitig 91229 created. Annotating repeats in reads for tig 7264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7265/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7266/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7267/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7269/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 2865:3649 - contained in read 31481 0- 6138 discard region 7636:8470 - contained in read 29279 2789- 9194 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7271/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7274/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5376:6771 - contained in read 372587 1815- 7323 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7276/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7279/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7281/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 5956:7092 - contained in read 30279 0- 8038 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7283/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5671:7117 - contained in read 459783 1660- 7865 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7285/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5366:8165 - contained in read 522291 1555- 12529 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7287/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7288/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7289/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1632:2463 - contained in read 31233 0- 4138 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7293/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3719:7610 - closest 5' read 190835 ( +600) 3119:6159 ( -1451) saved region 3719:7610 - closest 3' read 341940 ( -4) 3723:11191 ( +3581) saved region 9797:11228 - closest read 56609 ( +5) 9792:14261 ( +3033) (contained) saved region 9797:11228 - closest 5' read 56609 ( +5) 9792:14261 ( +3033) saved region 9797:11228 - closest 3' read 56609 ( +5) 9792:14261 ( +3033) search for confused edges: discard region 3719:7610 - no confusion in best edges discard region 9797:11228 - no confusion in best edges Annotating repeats in reads for tig 7294/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7296/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7300/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3624:4912 - contained in read 47849 0- 5882 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7301/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7305/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7306/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 13356:11891 - contained in read 261351 7237- 13360 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7309/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7311/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9950:10996 - contained in read 370475 980- 12189 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7314/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4857:3547 - contained in read 33813 0- 6746 discard region 7099:8002 - contained in read 284696 5372- 8002 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7315/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2629:4527 - contained in read 394852 0- 5586 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7316/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7318/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7319/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7321/90584. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 0:2746 - contained in read 348870 0- 8902 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7322/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7325/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4798:5508 - closest read 35275 ( +4798) 0:5588 ( +80) (contained) saved region 4798:5508 - closest read 35273 ( +4779) 19:5640 ( +132) (contained) saved region 4798:5508 - closest read 35274 ( +4742) 56:5615 ( +107) (contained) saved region 4798:5508 - closest read 35276 ( +4689) 109:5626 ( +118) (contained) saved region 4798:5508 - closest read 364691 ( +313) 4485:10499 ( +4991) (contained) saved region 4798:5508 - closest read 364694 ( +0) 4798:10490 ( +4982) (contained) saved region 4798:5508 - closest 5' read 364691 ( +313) 4485:10499 ( +4991) saved region 4798:5508 - closest 3' read 35275 ( +4798) 0:5588 ( +80) search for confused edges: discard region 4798:5508 - no confusion in best edges Annotating repeats in reads for tig 7326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7327/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7328/90584. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 1580:5371 - contained in read 205041 1077- 7109 discard region 6580:8053 - contained in read 280028 3433- 8614 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7330/90584. Annotated with 171 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7:6064 - closest 5' read 484911 ( +7) 0:5040 ( -1024) saved region 7:6064 - closest 3' read 35998 ( -3590) 3597:10370 ( +4306) search for confused edges: tig 7330 read 484911 pos 0-5040 NOT confused by 3' edge to read 272271 - best edge read 484910 len 5020 erate 0.0182 score 4928.64 - alt edge len 2004 erate 0.0275 score 1948.89 - absdiff 2979.75 percdiff 86.6517 tig 7330 read 484910 pos 34-5212 IS confused by 5' edge to read 272271 - best edge read 180658 len 3074 erate 0.0264 score 2992.85 - alt edge len 2173 erate 0.0249 score 2118.89 - absdiff 873.95 percdiff 34.1940 tig 7330 read 484910 pos 34-5212 NOT confused by 3' edge to read 358324 - best edge read 484911 len 5006 erate 0.0182 score 4914.89 - alt edge len 2122 erate 0.0099 score 2100.99 - absdiff 2813.90 percdiff 80.2151 tig 7330 read 180658 pos 2137-5787 IS confused by 5' edge to read 157196 - best edge read 484910 len 3075 erate 0.0306 score 2980.91 - alt edge len 2771 erate 0.0411 score 2657.11 - absdiff 323.79 percdiff 11.4861 tig 7330 read 180658 pos 2137-5787 IS confused by 5' edge to read 157198 - best edge read 484910 len 3075 erate 0.0306 score 2980.91 - alt edge len 2776 erate 0.0393 score 2666.90 - absdiff 314.00 percdiff 11.1194 tig 7330 read 35998 pos 3597-10370 IS confused by 5' edge to read 12396 - best edge read 180658 len 2190 erate 0.0238 score 2137.88 - alt edge len 2075 erate 0.0232 score 2026.86 - absdiff 111.02 percdiff 5.3313 tig 7330 read 35998 pos 3597-10370 IS confused by 5' edge to read 82195 - best edge read 180658 len 2190 erate 0.0238 score 2137.88 - alt edge len 1066 erate 0.0122 score 1052.99 - absdiff 1084.88 percdiff 67.9992 tig 7330 read 35998 pos 3597-10370 IS confused by 5' edge to read 89618 - best edge read 180658 len 2190 erate 0.0238 score 2137.88 - alt edge len 1741 erate 0.0155 score 1714.01 - absdiff 423.86 percdiff 22.0081 tig 7330 read 35998 pos 3597-10370 IS confused by 5' edge to read 157196 - best edge read 180658 len 2190 erate 0.0238 score 2137.88 - alt edge len 1308 erate 0.0130 score 1291.00 - absdiff 846.88 percdiff 49.3971 tig 7330 read 35998 pos 3597-10370 IS confused by 5' edge to read 157198 - best edge read 180658 len 2190 erate 0.0238 score 2137.88 - alt edge len 1313 erate 0.0076 score 1303.02 - absdiff 834.86 percdiff 48.5255 saved region 7:6064 - 8 best edges are potentially confused break tig 7330 into up to 2 pieces: 0 6564 repeat (length 6564) 6564 10370 unique (length 3806) Creating Unitig 91230 Creating Unitig 91231 For tig 7330 repeat region 0 6564 - 21/ 0 reads repeat/unique - unitig 91230 created. For tig 7330 unique region 6564 10370 - 0/ 4 reads repeat/unique - unitig 91231 created. Annotating repeats in reads for tig 7331/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7333/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5701:9542 - closest read 221789 ( +640) 5061:9546 ( +4) (contained) saved region 5701:9542 - closest read 206729 ( +0) 5701:9552 ( +10) (contained) saved region 5701:9542 - closest 5' read 206729 ( +0) 5701:9552 ( +10) saved region 5701:9542 - closest 3' read 221789 ( +640) 5061:9546 ( +4) search for confused edges: discard region 5701:9542 - no confusion in best edges Annotating repeats in reads for tig 7334/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7112:6401 - contained in read 498665 0- 10248 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7336/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 102:2872 - contained in read 315802 0- 3410 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7337/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1984:3320 - contained in read 36799 5- 3320 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7340/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7343/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7762:7248 - contained in read 379948 1618- 7776 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7345/90584. Annotated with 450 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5819:10749 - closest 5' read 37856 ( +5777) 42:6476 ( -4273) saved region 5819:10749 - closest 3' read 398107 ( -1407) 7226:11078 ( +329) search for confused edges: tig 7345 read 316033 pos 5837-10744 IS confused by 3' edge to read 6176 - best edge read 398107 len 3518 erate 0.0331 score 3401.55 - alt edge len 3221 erate 0.0432 score 3081.85 - absdiff 319.70 percdiff 9.8621 tig 7345 read 316033 pos 5837-10744 IS confused by 3' edge to read 402645 - best edge read 398107 len 3518 erate 0.0331 score 3401.55 - alt edge len 3265 erate 0.0282 score 3172.93 - absdiff 228.63 percdiff 6.9550 tig 7345 read 316033 pos 5837-10744 IS confused by 3' edge to read 402648 - best edge read 398107 len 3518 erate 0.0331 score 3401.55 - alt edge len 3276 erate 0.0329 score 3168.22 - absdiff 233.33 percdiff 7.1033 tig 7345 read 316033 pos 5837-10744 IS confused by 3' edge to read 458079 - best edge read 398107 len 3518 erate 0.0331 score 3401.55 - alt edge len 2886 erate 0.0437 score 2759.88 - absdiff 641.67 percdiff 20.8287 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 19297 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 2400 erate 0.0404 score 2303.04 - absdiff 1096.58 percdiff 38.4586 tig 7345 read 398107 pos 7226-11078 NOT confused by 3' edge to read 25365 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 657 erate 0.0353 score 633.81 - absdiff 2765.81 percdiff 137.1445 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 36821 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 3363 erate 0.0331 score 3251.68 - absdiff 147.94 percdiff 4.4483 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 39725 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 3474 erate 0.0363 score 3347.89 - absdiff 51.73 percdiff 1.5332 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 43611 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 1733 erate 0.0266 score 1686.90 - absdiff 1712.72 percdiff 67.3434 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 184649 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 3082 erate 0.0346 score 2975.36 - absdiff 424.26 percdiff 13.3101 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 193774 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 2861 erate 0.0380 score 2752.28 - absdiff 647.34 percdiff 21.0451 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 200277 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 3128 erate 0.0391 score 3005.70 - absdiff 393.93 percdiff 12.2999 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 200278 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 3249 erate 0.0330 score 3141.78 - absdiff 257.84 percdiff 7.8832 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 225281 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 2923 erate 0.0423 score 2799.36 - absdiff 600.26 percdiff 19.3665 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 264038 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 1716 erate 0.0321 score 1660.92 - absdiff 1738.70 percdiff 68.7162 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 289935 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 3364 erate 0.0337 score 3250.63 - absdiff 148.99 percdiff 4.4806 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 366916 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 2089 erate 0.0363 score 2013.17 - absdiff 1386.45 percdiff 51.2287 tig 7345 read 398107 pos 7226-11078 NOT confused by 3' edge to read 376636 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 520 erate 0.0309 score 503.93 - absdiff 2895.69 percdiff 148.3617 tig 7345 read 398107 pos 7226-11078 NOT confused by 3' edge to read 376637 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 579 erate 0.0329 score 559.95 - absdiff 2839.67 percdiff 143.4332 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 400747 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 1874 erate 0.0351 score 1808.22 - absdiff 1591.40 percdiff 61.1154 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 400749 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 1879 erate 0.0339 score 1815.30 - absdiff 1584.32 percdiff 60.7610 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 423011 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 3410 erate 0.0379 score 3280.76 - absdiff 118.86 percdiff 3.5585 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 433344 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 1572 erate 0.0418 score 1506.29 - absdiff 1893.33 percdiff 77.1857 tig 7345 read 398107 pos 7226-11078 NOT confused by 3' edge to read 436471 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 886 erate 0.0365 score 853.66 - absdiff 2545.96 percdiff 119.7174 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 443010 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 2849 erate 0.0292 score 2765.81 - absdiff 633.81 percdiff 20.5602 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 445536 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 2690 erate 0.0387 score 2585.90 - absdiff 813.72 percdiff 27.1897 tig 7345 read 398107 pos 7226-11078 IS confused by 3' edge to read 502485 - best edge read 316033 len 3516 erate 0.0331 score 3399.62 - alt edge len 3503 erate 0.0397 score 3363.93 - absdiff 35.69 percdiff 1.0553 saved region 5819:10749 - 23 best edges are potentially confused break tig 7345 into up to 2 pieces: 0 5319 unique (length 5319) 5319 11078 repeat (length 5759) Creating Unitig 91232 Creating Unitig 91233 For tig 7345 unique region 0 5319 - 0/ 4 reads repeat/unique - unitig 91232 created. For tig 7345 repeat region 5319 11078 - 16/ 0 reads repeat/unique - unitig 91233 created. Annotating repeats in reads for tig 7346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7347/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7350/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7363/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1805:5939 - closest 5' read 39505 ( +1782) 23:5606 ( -333) saved region 1805:5939 - closest 3' read 464033 ( -813) 2618:8134 ( +2195) search for confused edges: tig 7363 read 39505 pos 23-5606 IS confused by 5' edge to read 377979 - best edge read 464033 len 2988 erate 0.0243 score 2915.39 - alt edge len 1989 erate 0.0391 score 1911.23 - absdiff 1004.16 percdiff 41.6093 saved region 1805:5939 - 1 best edges are potentially confused break tig 7363 into up to 3 pieces: 0 1305 unique (length 1305) 1305 6439 repeat (length 5134) 6439 8472 unique (length 2033) Creating Unitig 91234 Creating Unitig 91235 Creating Unitig 91236 For tig 7363 unique region 0 1305 - 0/ 2 reads repeat/unique - unitig 91234 created. For tig 7363 repeat region 1305 6439 - 11/ 0 reads repeat/unique - unitig 91235 created. For tig 7363 unique region 6439 8472 - 0/ 4 reads repeat/unique - unitig 91236 created. Annotating repeats in reads for tig 7364/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7370/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7371/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5320:5903 - closest read 40849 ( +5320) 0:5938 ( +35) (contained) saved region 5320:5903 - closest read 40848 ( +5313) 7:5969 ( +66) (contained) saved region 5320:5903 - closest read 40850 ( +5296) 24:5977 ( +74) (contained) saved region 5320:5903 - closest read 40847 ( +4358) 962:5976 ( +73) (contained) saved region 5320:5903 - closest read 318085 ( +0) 5320:7813 ( +1910) (contained) saved region 5320:5903 - closest 5' read 318085 ( +0) 5320:7813 ( +1910) saved region 5320:5903 - closest 3' read 40849 ( +5320) 0:5938 ( +35) search for confused edges: discard region 5320:5903 - no confusion in best edges Annotating repeats in reads for tig 7372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7375/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2236:8924 - contained in read 446871 0- 13041 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7376/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7378/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2106:6855 - contained in read 41817 0- 6887 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7379/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7381/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7697:12789 - closest 5' read 529638 ( +3327) 4370:11121 ( -1668) saved region 7697:12789 - closest 3' read 306250 ( -1946) 9643:13756 ( +967) search for confused edges: discard region 7697:12789 - no confusion in best edges Annotating repeats in reads for tig 7382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7383/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6602:8736 - closest read 515220 ( +0) 6602:9808 ( +1072) (contained) saved region 6602:8736 - closest 5' read 515220 ( +0) 6602:9808 ( +1072) saved region 6602:8736 - closest 3' read 515220 ( +0) 6602:9808 ( +1072) search for confused edges: discard region 6602:8736 - no confusion in best edges Annotating repeats in reads for tig 7385/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13607:14693 - closest read 397439 ( +5818) 7789:14994 ( +301) (contained) saved region 13607:14693 - closest read 397436 ( +5810) 7797:14959 ( +266) (contained) saved region 13607:14693 - closest read 397437 ( +5806) 7801:15098 ( +405) (contained) saved region 13607:14693 - closest read 42355 ( +0) 13607:16195 ( +1502) (contained) saved region 13607:14693 - closest 5' read 42355 ( +0) 13607:16195 ( +1502) saved region 13607:14693 - closest 3' read 397439 ( +5818) 7789:14994 ( +301) search for confused edges: discard region 13607:14693 - no confusion in best edges Annotating repeats in reads for tig 7386/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7387/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2081:5787 - contained in read 42598 3- 5787 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7389/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 5347:3813 - contained in read 198917 1162- 5423 discard region 6330:9556 - contained in read 3523 3732- 10454 discard region 10698:11385 - contained in read 436059 7606- 11387 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7390/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7391/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7392/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7393/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7394/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7397/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7398/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7400/90584. Annotated with 53 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9479:13477 - closest read 52826 ( +369) 9110:13702 ( +225) (contained) saved region 9479:13477 - closest 5' read 52826 ( +369) 9110:13702 ( +225) saved region 9479:13477 - closest 3' read 52826 ( +369) 9110:13702 ( +225) search for confused edges: discard region 9479:13477 - no confusion in best edges Annotating repeats in reads for tig 7402/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7405/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4773:5816 - contained in read 126681 0- 6759 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7407/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2118:2724 - contained in read 45264 0- 5144 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7408/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7410/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7411/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 11315:10780 - contained in read 388953 5504- 12204 discard region 11672:12783 - contained in read 45630 6931- 15345 thickest edges to the repeat regions: saved region 4720:9794 - closest read 62385 ( +5) 4715:10487 ( +693) (contained) saved region 4720:9794 - closest 5' read 62385 ( +5) 4715:10487 ( +693) saved region 4720:9794 - closest 3' read 62385 ( +5) 4715:10487 ( +693) search for confused edges: discard region 4720:9794 - no confusion in best edges Annotating repeats in reads for tig 7412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7413/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3682:2849 - contained in read 45908 0- 5525 discard region 4011:5525 - contained in read 45908 0- 5525 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7414/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7415/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7416/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3837:5162 - closest read 397759 ( +2016) 1821:5219 ( +57) (contained) saved region 3837:5162 - closest read 393000 ( +44) 3793:5198 ( +36) (contained) saved region 3837:5162 - closest 5' read 397759 ( +2016) 1821:5219 ( +57) saved region 3837:5162 - closest 3' read 397759 ( +2016) 1821:5219 ( +57) search for confused edges: discard region 3837:5162 - no confusion in best edges Annotating repeats in reads for tig 7417/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7418/90584. Annotated with 76 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5889:9757 - closest 5' read 46183 ( +5889) 0:9289 ( -468) saved region 5889:9757 - closest 3' read 10885 ( -2586) 8475:15598 ( +5841) search for confused edges: tig 7418 read 46183 pos 0-9289 IS confused by 3' edge to read 238015 - best edge read 10885 len 814 erate 0.0332 score 786.98 - alt edge len 2009 erate 0.0335 score 1941.70 - absdiff 1154.72 percdiff 84.6362 saved region 5889:9757 - 1 best edges are potentially confused break tig 7418 into up to 3 pieces: 0 5389 unique (length 5389) 5389 10257 repeat (length 4868) 10257 17198 unique (length 6941) Creating Unitig 91237 Creating Unitig 91238 Creating Unitig 91239 For tig 7418 unique region 0 5389 - 0/ 6 reads repeat/unique - unitig 91237 created. For tig 7418 repeat region 5389 10257 - 4/ 0 reads repeat/unique - unitig 91238 created. For tig 7418 unique region 10257 17198 - 0/ 4 reads repeat/unique - unitig 91239 created. Annotating repeats in reads for tig 7419/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7421/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7422/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7425/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2995:4030 - contained in read 46828 0- 6457 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7426/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7428/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 4418:7990 - contained in read 191991 1119- 7990 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7431/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1776:4076 - contained in read 310351 0- 5467 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7433/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7435/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7439/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7441/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3727:7045 - closest read 421164 ( +3727) 0:7493 ( +448) (contained) saved region 3727:7045 - closest read 22464 ( +2020) 1707:7503 ( +458) (contained) saved region 3727:7045 - closest read 224914 ( +12) 3715:7052 ( +7) (contained) saved region 3727:7045 - closest 5' read 22464 ( +2020) 1707:7503 ( +458) saved region 3727:7045 - closest 3' read 421164 ( +3727) 0:7493 ( +448) search for confused edges: discard region 3727:7045 - no confusion in best edges Annotating repeats in reads for tig 7442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7443/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7445/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7446/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7450/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7451/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7453/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7456/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7457/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7459/90584. Annotated with 72 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4991:7747 - closest 5' read 136561 ( +4963) 28:7146 ( -601) saved region 4991:7747 - closest 3' read 50193 ( -530) 5521:10182 ( +2435) search for confused edges: tig 7459 read 50193 pos 5521-10182 IS confused by 5' edge to read 112653 - best edge read 136561 len 1625 erate 0.0185 score 1594.94 - alt edge len 1212 erate 0.0200 score 1187.76 - absdiff 407.18 percdiff 29.2649 tig 7459 read 50193 pos 5521-10182 IS confused by 5' edge to read 112654 - best edge read 136561 len 1625 erate 0.0185 score 1594.94 - alt edge len 1177 erate 0.0196 score 1153.93 - absdiff 441.01 percdiff 32.0864 tig 7459 read 50193 pos 5521-10182 IS confused by 5' edge to read 112655 - best edge read 136561 len 1625 erate 0.0185 score 1594.94 - alt edge len 1158 erate 0.0182 score 1136.92 - absdiff 458.01 percdiff 33.5312 tig 7459 read 50193 pos 5521-10182 IS confused by 5' edge to read 338471 - best edge read 136561 len 1625 erate 0.0185 score 1594.94 - alt edge len 1617 erate 0.0199 score 1584.82 - absdiff 10.12 percdiff 0.6363 tig 7459 read 50193 pos 5521-10182 IS confused by 5' edge to read 441344 - best edge read 136561 len 1625 erate 0.0185 score 1594.94 - alt edge len 1346 erate 0.0299 score 1305.75 - absdiff 289.18 percdiff 19.9389 saved region 4991:7747 - 5 best edges are potentially confused break tig 7459 into up to 3 pieces: 0 4491 unique (length 4491) 4491 8247 repeat (length 3756) 8247 10182 unique (length 1935) Creating Unitig 91240 Creating Unitig 91241 Creating Unitig 91242 For tig 7459 unique region 0 4491 - 0/ 2 reads repeat/unique - unitig 91240 created. For tig 7459 repeat region 4491 8247 - 6/ 0 reads repeat/unique - unitig 91241 created. For tig 7459 unique region 8247 10182 - 0/ 1 reads repeat/unique - unitig 91242 created. Annotating repeats in reads for tig 7460/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7461/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1207:9306 - closest 5' read 523979 ( +141) 1066:6591 ( -2715) saved region 1207:9306 - closest 3' read 214877 ( -481) 1688:9310 ( +4) search for confused edges: discard region 1207:9306 - no confusion in best edges Annotating repeats in reads for tig 7462/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1021:2664 - closest read 50875 ( +34) 987:7829 ( +5165) (contained) saved region 1021:2664 - closest read 50879 ( +24) 997:7403 ( +4739) (contained) saved region 1021:2664 - closest read 264369 ( +24) 997:4961 ( +2297) (contained) saved region 1021:2664 - closest read 492368 ( +19) 1002:2952 ( +288) (contained) saved region 1021:2664 - closest read 50877 ( +13) 1008:8044 ( +5380) (contained) saved region 1021:2664 - closest read 409689 ( +13) 1008:4429 ( +1765) (contained) saved region 1021:2664 - closest read 264370 ( +1) 1020:4839 ( +2175) (contained) saved region 1021:2664 - closest 5' read 50877 ( +13) 1008:8044 ( +5380) saved region 1021:2664 - closest 3' read 50875 ( +34) 987:7829 ( +5165) search for confused edges: discard region 1021:2664 - no confusion in best edges Annotating repeats in reads for tig 7463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7469/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7470/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7471/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:936 - contained in read 242699 0- 6479 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7473/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7475/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1388:259 - contained in read 52189 0- 5338 discard region 2196:4539 - contained in read 52189 0- 5338 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7476/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7478/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7479/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2977:5155 - contained in read 52719 0- 6702 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7481/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 645:4456 - contained in read 156811 0- 5866 discard region 5584:8632 - contained in read 131727 4938- 9912 discard region 13066:16771 - contained in read 131725 8857- 17593 discard region 17172:18282 - contained in read 52848 12962- 18282 thickest edges to the repeat regions: saved region 8968:12677 - closest read 131725 ( +111) 8857:17593 ( +4916) (contained) saved region 8968:12677 - closest 5' read 131725 ( +111) 8857:17593 ( +4916) saved region 8968:12677 - closest 3' read 131725 ( +111) 8857:17593 ( +4916) search for confused edges: discard region 8968:12677 - no confusion in best edges Annotating repeats in reads for tig 7482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7483/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9332:10365 - closest read 184779 ( +1590) 7742:10502 ( +137) (contained) saved region 9332:10365 - closest read 53353 ( +6) 9326:10507 ( +142) (contained) saved region 9332:10365 - closest 5' read 53353 ( +6) 9326:10507 ( +142) saved region 9332:10365 - closest 3' read 184779 ( +1590) 7742:10502 ( +137) search for confused edges: discard region 9332:10365 - no confusion in best edges Annotating repeats in reads for tig 7484/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7488/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2860:5874 - contained in read 408474 0- 8967 discard region 8366:7374 - contained in read 408474 0- 8967 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7489/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6:2994 - contained in read 53928 0- 6471 discard region 4322:6618 - contained in read 53927 13- 6618 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7490/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1187:3613 - contained in read 54006 0- 5762 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7491/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7494/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7497/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7499/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7500/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4023:5791 - contained in read 55533 2- 5791 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7501/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7504/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7507/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7509/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7510/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7511/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7513/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7514/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7515/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7734:8271 - closest read 56916 ( +7734) 0:8283 ( +12) (contained) saved region 7734:8271 - closest read 56917 ( +6545) 1189:8361 ( +90) (contained) saved region 7734:8271 - closest read 205482 ( +4509) 3225:8304 ( +33) (contained) saved region 7734:8271 - closest read 446286 ( +0) 7734:13602 ( +5331) (contained) saved region 7734:8271 - closest 5' read 446286 ( +0) 7734:13602 ( +5331) saved region 7734:8271 - closest 3' read 56916 ( +7734) 0:8283 ( +12) search for confused edges: discard region 7734:8271 - no confusion in best edges Annotating repeats in reads for tig 7517/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7528/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7530/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7532/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7535/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7536/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7538/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7540/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7541/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7542/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7543/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7545/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7546/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 0:3087 - contained in read 389897 0- 5224 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7547/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4642:6903 - closest read 60961 ( +280) 4362:6948 ( +45) (contained) saved region 4642:6903 - closest read 60960 ( +170) 4472:6935 ( +32) (contained) saved region 4642:6903 - closest read 60959 ( +0) 4642:6934 ( +31) (contained) saved region 4642:6903 - closest 5' read 60961 ( +280) 4362:6948 ( +45) saved region 4642:6903 - closest 3' read 60961 ( +280) 4362:6948 ( +45) search for confused edges: discard region 4642:6903 - no confusion in best edges Annotating repeats in reads for tig 7550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7553/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7556/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7565/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 729:1850 - contained in read 478595 0- 5672 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7566/90584. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 4513:6691 - contained in read 66670 2180- 8385 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7578/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7579/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7581/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3510:5737 - closest read 441144 ( +113) 3397:10010 ( +4273) (contained) saved region 3510:5737 - closest read 441143 ( +77) 3433:10007 ( +4270) (contained) saved region 3510:5737 - closest 5' read 441144 ( +113) 3397:10010 ( +4273) saved region 3510:5737 - closest 3' read 441144 ( +113) 3397:10010 ( +4273) search for confused edges: discard region 3510:5737 - no confusion in best edges Annotating repeats in reads for tig 7582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7584/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 24:3945 - contained in read 65999 0- 6586 discard region 4172:4804 - contained in read 65999 0- 6586 discard region 6636:7872 - contained in read 380586 1187- 7882 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7585/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7586/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7589/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7596/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7600/90584. Annotated with 81 overlaps. Scan reads to discard spanned repeats. discard region 1812:5481 - contained in read 67510 0- 6729 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7602/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 746:1734 - contained in read 67808 0- 5887 discard region 2321:3121 - contained in read 67808 0- 5887 discard region 3264:4626 - contained in read 67808 0- 5887 discard region 4619:6008 - contained in read 238854 747- 7614 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7603/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 1943:2612 - contained in read 98311 0- 6355 discard region 5358:6843 - contained in read 85601 1939- 9811 discard region 7464:11188 - contained in read 68127 3582- 11188 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7608/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5017:2698 - contained in read 426294 0- 10347 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7614/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7630/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6199:5647 - contained in read 70901 0- 6197 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7631/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1908:5013 - contained in read 187434 0- 5924 discard region 5669:5112 - contained in read 187434 0- 5924 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7632/90584. Annotated with 99 overlaps. Scan reads to discard spanned repeats. discard region 7102:9504 - contained in read 124463 3570- 10269 thickest edges to the repeat regions: saved region 2407:7076 - closest 5' read 71218 ( +2007) 400:6267 ( -809) saved region 2407:7076 - closest 3' read 124463 ( -1163) 3570:10269 ( +3193) search for confused edges: tig 7632 read 71221 pos 168-6262 IS confused by 5' edge to read 56231 - best edge read 124463 len 2692 erate 0.0217 score 2633.58 - alt edge len 718 erate 0.0404 score 688.99 - absdiff 1944.59 percdiff 117.0532 saved region 2407:7076 - 1 best edges are potentially confused break tig 7632 into up to 3 pieces: 0 1907 unique (length 1907) 1907 7576 repeat (length 5669) 7576 10269 unique (length 2693) Creating Unitig 91243 Creating Unitig 91244 Creating Unitig 91245 For tig 7632 unique region 0 1907 - 0/ 8 reads repeat/unique - unitig 91243 created. For tig 7632 repeat region 1907 7576 - 4/ 0 reads repeat/unique - unitig 91244 created. For tig 7632 unique region 7576 10269 - 0/ 8 reads repeat/unique - unitig 91245 created. Annotating repeats in reads for tig 7633/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7641/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 1679:4153 - contained in read 233503 0- 6424 discard region 4191:7349 - contained in read 72415 2918- 10301 discard region 8303:9181 - contained in read 72415 2918- 10301 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7642/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7643/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7647/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7648/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7573:8686 - contained in read 340727 198- 9653 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7649/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2569:3626 - contained in read 88982 0- 6053 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7655/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7658/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7659/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7663/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7668/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5146:6574 - contained in read 74653 174- 6574 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7669/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7674/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7678/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 6454:8466 - contained in read 277255 5668- 10684 discard region 8563:9502 - contained in read 277255 5668- 10684 thickest edges to the repeat regions: saved region 1163:1870 - closest read 433817 ( +6) 1157:6972 ( +5102) (contained) saved region 1163:1870 - closest read 433819 ( +2) 1161:6891 ( +5021) (contained) saved region 1163:1870 - closest 5' read 433817 ( +6) 1157:6972 ( +5102) saved region 1163:1870 - closest 3' read 433817 ( +6) 1157:6972 ( +5102) saved region 9907:14192 - closest read 44118 ( +0) 9907:14662 ( +470) (contained) saved region 9907:14192 - closest 5' read 44118 ( +0) 9907:14662 ( +470) saved region 9907:14192 - closest 3' read 44118 ( +0) 9907:14662 ( +470) search for confused edges: discard region 1163:1870 - no confusion in best edges discard region 9907:14192 - no confusion in best edges Annotating repeats in reads for tig 7680/90584. Annotated with 55 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5282:10767 - closest 5' read 39854 ( +3994) 1288:6768 ( -3999) saved region 5282:10767 - closest 3' read 75530 ( -220) 5502:14996 ( +4229) search for confused edges: tig 7680 read 75532 pos 5504-14947 IS confused by 5' edge to read 85193 - best edge read 39854 len 1264 erate 0.0420 score 1210.91 - alt edge len 3358 erate 0.0146 score 3308.97 - absdiff 2098.06 percdiff 92.8369 saved region 5282:10767 - 1 best edges are potentially confused break tig 7680 into up to 3 pieces: 0 4782 unique (length 4782) 4782 11267 repeat (length 6485) 11267 14996 unique (length 3729) Creating Unitig 91246 Creating Unitig 91247 Creating Unitig 91248 For tig 7680 unique region 0 4782 - 0/ 2 reads repeat/unique - unitig 91246 created. For tig 7680 repeat region 4782 11267 - 4/ 0 reads repeat/unique - unitig 91247 created. For tig 7680 unique region 11267 14996 - 0/ 2 reads repeat/unique - unitig 91248 created. Annotating repeats in reads for tig 7681/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7683/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7684/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6507:5886 - contained in read 451455 0- 7315 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7685/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7687/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7688/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7696/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7699/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7700/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5373:2669 - contained in read 78381 0- 4367 discard region 5853:2670 - contained in read 78381 0- 4367 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7701/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1472:6379 - closest read 475404 ( +0) 1472:8552 ( +2173) (contained) saved region 1472:6379 - closest 5' read 475404 ( +0) 1472:8552 ( +2173) saved region 1472:6379 - closest 3' read 475404 ( +0) 1472:8552 ( +2173) search for confused edges: discard region 1472:6379 - no confusion in best edges Annotating repeats in reads for tig 7702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7703/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7705/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7707/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8112:7373 - contained in read 104947 5437- 8114 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7710/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1618:3 - contained in read 142286 0- 3352 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7712/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7713/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 0:2526 - contained in read 80998 0- 8562 discard region 4439:9747 - contained in read 65346 3270- 9751 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7714/90584. Annotated with 48 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4731:7688 - closest 5' read 830 ( +77) 4654:7668 ( -20) saved region 4731:7688 - closest 3' read 81478 ( -47) 4778:10777 ( +3089) search for confused edges: tig 7714 read 432809 pos 8-6718 IS confused by 5' edge to read 160196 - best edge read 81478 len 1949 erate 0.0412 score 1868.70 - alt edge len 854 erate 0.0448 score 815.74 - absdiff 1052.96 percdiff 78.4491 tig 7714 read 432809 pos 8-6718 IS confused by 5' edge to read 160197 - best edge read 81478 len 1949 erate 0.0412 score 1868.70 - alt edge len 902 erate 0.0402 score 865.74 - absdiff 1002.96 percdiff 73.3577 tig 7714 read 432809 pos 8-6718 IS confused by 5' edge to read 196283 - best edge read 81478 len 1949 erate 0.0412 score 1868.70 - alt edge len 1854 erate 0.0357 score 1787.81 - absdiff 80.89 percdiff 4.4244 tig 7714 read 432809 pos 8-6718 IS confused by 5' edge to read 486073 - best edge read 81478 len 1949 erate 0.0412 score 1868.70 - alt edge len 731 erate 0.0315 score 707.97 - absdiff 1160.73 percdiff 90.0950 tig 7714 read 432809 pos 8-6718 IS confused by 5' edge to read 486074 - best edge read 81478 len 1949 erate 0.0412 score 1868.70 - alt edge len 736 erate 0.0342 score 710.83 - absdiff 1157.87 percdiff 89.7739 tig 7714 read 432809 pos 8-6718 IS confused by 5' edge to read 519766 - best edge read 81478 len 1949 erate 0.0412 score 1868.70 - alt edge len 1801 erate 0.0235 score 1758.68 - absdiff 110.02 percdiff 6.0663 saved region 4731:7688 - 6 best edges are potentially confused break tig 7714 into up to 3 pieces: 0 4231 unique (length 4231) 4231 8188 repeat (length 3957) 8188 10797 unique (length 2609) Creating Unitig 91249 Creating Unitig 91250 Creating Unitig 91251 For tig 7714 unique region 0 4231 - 0/ 3 reads repeat/unique - unitig 91249 created. For tig 7714 repeat region 4231 8188 - 2/ 0 reads repeat/unique - unitig 91250 created. For tig 7714 unique region 8188 10797 - 0/ 2 reads repeat/unique - unitig 91251 created. Annotating repeats in reads for tig 7715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7720/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5365:8136 - closest read 332814 ( +5365) 0:8291 ( +155) (contained) saved region 5365:8136 - closest read 332813 ( +5106) 259:8295 ( +159) (contained) saved region 5365:8136 - closest 5' read 332813 ( +5106) 259:8295 ( +159) saved region 5365:8136 - closest 3' read 332814 ( +5365) 0:8291 ( +155) search for confused edges: discard region 5365:8136 - no confusion in best edges Annotating repeats in reads for tig 7721/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7723/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7726/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7729/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7734/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4657:7175 - closest read 144658 ( +23) 4634:11262 ( +4087) (contained) saved region 4657:7175 - closest 5' read 144658 ( +23) 4634:11262 ( +4087) saved region 4657:7175 - closest 3' read 144658 ( +23) 4634:11262 ( +4087) search for confused edges: discard region 4657:7175 - no confusion in best edges Annotating repeats in reads for tig 7735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7739/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7742/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7743/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7746/90584. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 86:770 - contained in read 178125 0- 7583 thickest edges to the repeat regions: saved region 3536:8296 - closest 5' read 289702 ( +8) 3528:7608 ( -688) saved region 3536:8296 - closest 3' read 85193 ( -513) 4049:10110 ( +1814) search for confused edges: tig 7746 read 85193 pos 4049-10110 IS confused by 5' edge to read 75530 - best edge read 178125 len 3534 erate 0.0380 score 3399.71 - alt edge len 3371 erate 0.0092 score 3339.99 - absdiff 59.72 percdiff 1.7722 tig 7746 read 85193 pos 4049-10110 IS confused by 5' edge to read 75532 - best edge read 178125 len 3534 erate 0.0380 score 3399.71 - alt edge len 3377 erate 0.0146 score 3327.70 - absdiff 72.01 percdiff 2.1409 tig 7746 read 85193 pos 4049-10110 NOT confused by 5' edge to read 495851 - best edge read 178125 len 3534 erate 0.0380 score 3399.71 - alt edge len 1134 erate 0.0229 score 1108.03 - absdiff 2291.68 percdiff 101.6774 saved region 3536:8296 - 2 best edges are potentially confused break tig 7746 into up to 3 pieces: 0 3036 unique (length 3036) 3036 8796 repeat (length 5760) 8796 10110 unique (length 1314) Creating Unitig 91252 Creating Unitig 91253 Creating Unitig 91254 For tig 7746 unique region 0 3036 - 0/ 8 reads repeat/unique - unitig 91252 created. For tig 7746 repeat region 3036 8796 - 19/ 0 reads repeat/unique - unitig 91253 created. For tig 7746 unique region 8796 10110 - 0/ 2 reads repeat/unique - unitig 91254 created. Annotating repeats in reads for tig 7748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7751/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7754/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 14365:15474 - contained in read 85766 8723- 16027 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7759/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7763/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7773/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4068:5085 - contained in read 18605 431- 6837 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7774/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7777/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9899:11113 - closest read 4583 ( +6743) 3156:11121 ( +8) (contained) saved region 9899:11113 - closest 5' read 4583 ( +6743) 3156:11121 ( +8) saved region 9899:11113 - closest 3' read 4583 ( +6743) 3156:11121 ( +8) search for confused edges: discard region 9899:11113 - no confusion in best edges Annotating repeats in reads for tig 7778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7782/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7784/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7785/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7787/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7793/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7796/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7798/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7799/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 7046:8730 - contained in read 262312 1365- 10169 discard region 10118:11136 - contained in read 114602 1746- 15789 thickest edges to the repeat regions: saved region 1359:3190 - closest 5' read 90655 ( +1359) 0:2320 ( -870) saved region 1359:3190 - closest 3' read 262312 ( -6) 1365:10169 ( +6979) search for confused edges: discard region 1359:3190 - no confusion in best edges Annotating repeats in reads for tig 7802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7805/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1112:4128 - contained in read 91191 5- 5592 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7817/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7818/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7819/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7821/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9861:9190 - contained in read 250284 5429- 10255 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7824/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7830/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7832/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 10513:9483 - contained in read 242727 5092- 10513 discard region 10513:9492 - contained in read 242727 5092- 10513 thickest edges to the repeat regions: saved region 5048:6541 - closest 5' read 94671 ( +4976) 72:5997 ( -544) saved region 5048:6541 - closest 3' read 242728 ( -1) 5049:7129 ( +588) search for confused edges: tig 7832 read 94671 pos 72-5997 IS confused by 5' edge to read 199211 - best edge read 242727 len 905 erate 0.0432 score 865.90 - alt edge len 943 erate 0.0339 score 911.03 - absdiff 45.13 percdiff 5.0793 saved region 5048:6541 - 1 best edges are potentially confused break tig 7832 into up to 3 pieces: 0 4548 unique (length 4548) 4548 7041 repeat (length 2493) 7041 10513 unique (length 3472) Creating Unitig 91255 Creating Unitig 91256 Creating Unitig 91257 For tig 7832 unique region 0 4548 - 0/ 6 reads repeat/unique - unitig 91255 created. For tig 7832 repeat region 4548 7041 - 1/ 0 reads repeat/unique - unitig 91257 created. For tig 7832 unique region 7041 10513 - 0/ 3 reads repeat/unique - unitig 91256 created. Annotating repeats in reads for tig 7833/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:2539 - contained in read 94908 0- 5062 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7835/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1608:4132 - contained in read 95017 0- 4751 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7841/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7842/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5926:7184 - closest read 401671 ( +0) 5926:11245 ( +4061) (contained) saved region 5926:7184 - closest read 401672 ( +0) 5926:9584 ( +2400) (contained) saved region 5926:7184 - closest 5' read 401671 ( +0) 5926:11245 ( +4061) saved region 5926:7184 - closest 3' read 401671 ( +0) 5926:11245 ( +4061) search for confused edges: discard region 5926:7184 - no confusion in best edges Annotating repeats in reads for tig 7843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7844/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7846/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7847/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7848/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1352:356 - contained in read 4778 0- 6503 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7850/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7851/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7854/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7855/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2507:3100 - contained in read 193015 0- 10172 discard region 7989:9603 - contained in read 193015 0- 10172 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7860/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7863/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7864/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 1115:3233 - contained in read 99418 0- 5599 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7866/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7871/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7872/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7873/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7874/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7875/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7876/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7877/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7879/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7881/90584. Annotated with 85 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 490:4874 - closest 5' read 66402 ( +0) 490:4849 ( -25) saved region 490:4874 - closest 3' read 499850 ( -2711) 3201:15957 (+11083) search for confused edges: discard region 490:4874 - no confusion in best edges Annotating repeats in reads for tig 7882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7883/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7854:5662 - contained in read 323593 115- 8516 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7884/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7885/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7887/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7889/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 8928:11226 - contained in read 103412 4861- 11414 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7890/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7896/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 4130:7256 - contained in read 104578 1819- 7256 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7899/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 921:396 - contained in read 104682 0- 5155 discard region 5195:8279 - contained in read 499683 2433- 8323 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7900/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7902/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 581:5827 - closest 5' read 270698 ( +22) 559:5760 ( -67) saved region 581:5827 - closest 3' read 251198 ( -1642) 2223:9982 ( +4155) search for confused edges: discard region 581:5827 - no confusion in best edges Annotating repeats in reads for tig 7903/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2523:3777 - contained in read 105298 0- 5161 discard region 4575:5515 - contained in read 146388 1477- 6855 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7907/90584. Annotated with 49 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3751:6511 - closest 5' read 363866 ( +3739) 12:6482 ( -29) saved region 3751:6511 - closest 3' read 289807 ( -127) 3878:6554 ( +43) search for confused edges: tig 7907 read 363866 pos 12-6482 IS confused by 5' edge to read 21349 - best edge read 342884 len 2408 erate 0.0249 score 2348.04 - alt edge len 2464 erate 0.0154 score 2426.05 - absdiff 78.01 percdiff 3.2682 tig 7907 read 363866 pos 12-6482 IS confused by 5' edge to read 122398 - best edge read 342884 len 2408 erate 0.0249 score 2348.04 - alt edge len 1428 erate 0.0334 score 1380.30 - absdiff 967.74 percdiff 51.9124 tig 7907 read 363866 pos 12-6482 IS confused by 5' edge to read 402895 - best edge read 342884 len 2408 erate 0.0249 score 2348.04 - alt edge len 601 erate 0.0268 score 584.89 - absdiff 1763.15 percdiff 120.2310 tig 7907 read 363866 pos 12-6482 IS confused by 5' edge to read 402896 - best edge read 342884 len 2408 erate 0.0249 score 2348.04 - alt edge len 596 erate 0.0253 score 580.92 - absdiff 1767.12 percdiff 120.6652 tig 7907 read 342884 pos 4063-10060 IS confused by 3' edge to read 21350 - best edge read 363866 len 2419 erate 0.0249 score 2358.77 - alt edge len 2418 erate 0.0286 score 2348.85 - absdiff 9.92 percdiff 0.4215 tig 7907 read 342884 pos 4063-10060 IS confused by 3' edge to read 176676 - best edge read 363866 len 2419 erate 0.0249 score 2358.77 - alt edge len 2418 erate 0.0253 score 2356.82 - absdiff 1.94 percdiff 0.0824 tig 7907 read 342884 pos 4063-10060 IS confused by 3' edge to read 361006 - best edge read 363866 len 2419 erate 0.0249 score 2358.77 - alt edge len 2161 erate 0.0219 score 2113.67 - absdiff 245.09 percdiff 10.9601 tig 7907 read 342884 pos 4063-10060 IS confused by 3' edge to read 364440 - best edge read 363866 len 2419 erate 0.0249 score 2358.77 - alt edge len 2419 erate 0.0274 score 2352.72 - absdiff 6.05 percdiff 0.2567 saved region 3751:6511 - 8 best edges are potentially confused break tig 7907 into up to 3 pieces: 0 3251 unique (length 3251) 3251 7011 repeat (length 3760) 7011 10145 unique (length 3134) Creating Unitig 91258 Creating Unitig 91259 Creating Unitig 91260 For tig 7907 unique region 0 3251 - 0/ 2 reads repeat/unique - unitig 91258 created. For tig 7907 repeat region 3251 7011 - 9/ 0 reads repeat/unique - unitig 91259 created. For tig 7907 unique region 7011 10145 - 0/ 2 reads repeat/unique - unitig 91260 created. Annotating repeats in reads for tig 7908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7909/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7910/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5104:6466 - contained in read 429080 0- 6979 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7914/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7915/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7916/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7920/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7922/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7925/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7927/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2:651 - contained in read 115493 0- 6072 discard region 1830:1321 - contained in read 115493 0- 6072 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7931/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7934/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7936/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7939/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7940/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2291:4798 - contained in read 514174 0- 6528 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7942/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7944/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7951/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4806:5877 - closest 5' read 509005 ( +4806) 0:5867 ( -10) saved region 4806:5877 - closest 3' read 86787 ( -64) 4870:7362 ( +1485) search for confused edges: discard region 4806:5877 - no confusion in best edges Annotating repeats in reads for tig 7953/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7954/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7955/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5334:7671 - closest 5' read 526913 ( +4762) 572:7580 ( -91) saved region 5334:7671 - closest 3' read 383302 ( -32) 5366:8392 ( +721) search for confused edges: discard region 5334:7671 - no confusion in best edges Annotating repeats in reads for tig 7956/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3260:4648 - contained in read 286685 0- 5637 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7959/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7960/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7961/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7963/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7965/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7966/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2063:5539 - contained in read 114035 37- 5539 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7974/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7976/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7977/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7982/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7983/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5098:6150 - closest 5' read 270588 ( +4688) 410:6133 ( -17) saved region 5098:6150 - closest 3' read 218098 ( -459) 5557:11630 ( +5480) search for confused edges: tig 7983 read 218098 pos 5557-11630 IS confused by 5' edge to read 332587 - best edge read 115776 len 575 erate 0.0403 score 551.83 - alt edge len 528 erate 0.0305 score 511.90 - absdiff 39.93 percdiff 7.5079 tig 7983 read 218098 pos 5557-11630 IS confused by 5' edge to read 342028 - best edge read 115776 len 575 erate 0.0403 score 551.83 - alt edge len 556 erate 0.0271 score 540.93 - absdiff 10.90 percdiff 1.9941 tig 7983 read 218098 pos 5557-11630 IS confused by 5' edge to read 431164 - best edge read 115776 len 575 erate 0.0403 score 551.83 - alt edge len 574 erate 0.0317 score 555.80 - absdiff 3.98 percdiff 0.7181 saved region 5098:6150 - 3 best edges are potentially confused break tig 7983 into up to 3 pieces: 0 4598 unique (length 4598) 4598 6650 repeat (length 2052) 6650 11637 unique (length 4987) Creating Unitig 91261 Creating Unitig 91262 For tig 7983 unique region 0 4598 - 0/ 5 reads repeat/unique - unitig 91261 created. For tig 7983 repeat region 4598 6650 - 0/ 0 repeat/unique reads - no new unitig created. For tig 7983 unique region 6650 11637 - 0/ 3 reads repeat/unique - unitig 91262 created. Annotating repeats in reads for tig 7985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7986/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4959:6571 - contained in read 115939 53- 6571 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7989/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 5197:6336 - contained in read 116207 147- 6336 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7991/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 3471:6025 - contained in read 264822 2352- 6025 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7992/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7993/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4066:5259 - closest read 497342 ( +4066) 0:5598 ( +339) (contained) saved region 4066:5259 - closest read 497347 ( +3970) 96:5607 ( +348) (contained) saved region 4066:5259 - closest 5' read 497347 ( +3970) 96:5607 ( +348) saved region 4066:5259 - closest 3' read 497342 ( +4066) 0:5598 ( +339) search for confused edges: discard region 4066:5259 - no confusion in best edges Annotating repeats in reads for tig 7994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7996/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 7998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8001/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8005/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8009/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8014/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 197:4894 - closest 5' read 129385 ( +181) 16:4850 ( -44) saved region 197:4894 - closest 3' read 68683 ( -2991) 3188:12735 ( +7841) search for confused edges: discard region 197:4894 - no confusion in best edges Annotating repeats in reads for tig 8015/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6472:5234 - contained in read 119273 0- 8781 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8019/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8021/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:3364 - contained in read 408854 0- 4200 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8029/90584. Annotated with 463 overlaps. Scan reads to discard spanned repeats. discard region 9293:10133 - contained in read 121386 4680- 12224 thickest edges to the repeat regions: saved region 4527:7066 - closest read 321477 ( +4527) 0:7412 ( +346) (contained) saved region 4527:7066 - closest read 321478 ( +4504) 23:7400 ( +334) (contained) saved region 4527:7066 - closest read 321480 ( +4503) 24:7382 ( +316) (contained) saved region 4527:7066 - closest 5' read 321477 ( +4527) 0:7412 ( +346) saved region 4527:7066 - closest 3' read 321477 ( +4527) 0:7412 ( +346) search for confused edges: discard region 4527:7066 - no confusion in best edges Annotating repeats in reads for tig 8030/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 0:2371 - contained in read 379227 0- 7716 discard region 3326:5768 - contained in read 379227 0- 7716 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8031/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8032/90584. Annotated with 56 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6:6946 - closest 5' read 320461 ( +3) 3:4929 ( -2017) saved region 6:6946 - closest 3' read 208326 ( -607) 613:8741 ( +1795) search for confused edges: tig 8032 read 320461 pos 3-4929 IS confused by 3' edge to read 452192 - best edge read 528058 len 4593 erate 0.0218 score 4492.87 - alt edge len 3331 erate 0.0096 score 3299.02 - absdiff 1193.85 percdiff 30.6434 tig 8032 read 208327 pos 620-8783 NOT confused by 5' edge to read 445818 - best edge read 528058 len 6214 erate 0.0256 score 6054.92 - alt edge len 1216 erate 0.0338 score 1174.90 - absdiff 4880.02 percdiff 134.9970 saved region 6:6946 - 1 best edges are potentially confused break tig 8032 into up to 2 pieces: 0 7446 repeat (length 7446) 7446 8783 unique (length 1337) Creating Unitig 91263 Creating Unitig 91264 For tig 8032 repeat region 0 7446 - 37/ 0 reads repeat/unique - unitig 91263 created. For tig 8032 unique region 7446 8783 - 0/ 3 reads repeat/unique - unitig 91264 created. Annotating repeats in reads for tig 8034/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8037/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8038/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8040/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1852:4219 - contained in read 122937 0- 5645 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8044/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8049/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3717:8285 - closest read 143112 ( +486) 3231:11656 ( +3371) (contained) saved region 3717:8285 - closest read 332683 ( +3) 3714:8353 ( +68) (contained) saved region 3717:8285 - closest 5' read 143112 ( +486) 3231:11656 ( +3371) saved region 3717:8285 - closest 3' read 143112 ( +486) 3231:11656 ( +3371) search for confused edges: discard region 3717:8285 - no confusion in best edges Annotating repeats in reads for tig 8050/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3854:4362 - closest read 123977 ( +3854) 0:4375 ( +13) (contained) saved region 3854:4362 - closest read 123979 ( +3854) 0:4365 ( +3) (contained) saved region 3854:4362 - closest read 123976 ( +3838) 16:4410 ( +48) (contained) saved region 3854:4362 - closest read 123978 ( +3834) 20:4429 ( +67) (contained) saved region 3854:4362 - closest read 123981 ( +3761) 93:4372 ( +10) (contained) saved region 3854:4362 - closest read 123982 ( +3728) 126:4395 ( +33) (contained) saved region 3854:4362 - closest read 531429 ( +2183) 1671:4388 ( +26) (contained) saved region 3854:4362 - closest read 485510 ( +0) 3854:9484 ( +5122) (contained) saved region 3854:4362 - closest 5' read 485510 ( +0) 3854:9484 ( +5122) saved region 3854:4362 - closest 3' read 123977 ( +3854) 0:4375 ( +13) search for confused edges: discard region 3854:4362 - no confusion in best edges Annotating repeats in reads for tig 8051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8052/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8053/90584. Annotated with 55 overlaps. Scan reads to discard spanned repeats. discard region 2852:5348 - contained in read 487561 1235- 6891 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8056/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8058/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8059/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8062/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8063/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8071/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8076/90584. Annotated with 181 overlaps. Scan reads to discard spanned repeats. discard region 0:5267 - contained in read 409373 0- 6768 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8077/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8079/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8080/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8081/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8083/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8084/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8085/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 9612:14008 - contained in read 407141 5866- 17835 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8092/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8100/90584. Annotated with 49 overlaps. Scan reads to discard spanned repeats. discard region 4273:7167 - contained in read 16333 1748- 7954 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8101/90584. Annotated with 63 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6699 - closest 5' read 439557 ( +0) 0:5657 ( -1042) saved region 0:6699 - closest 3' read 474178 ( -3565) 3565:10417 ( +3718) search for confused edges: discard region 0:6699 - no confusion in best edges Annotating repeats in reads for tig 8102/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 4742:8649 - contained in read 458578 0- 9494 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8107/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8110/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8112/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8113/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8115/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 9654:9084 - contained in read 132117 0- 9666 discard region 9668:9100 - contained in read 132117 0- 9666 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8118/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8126/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 10206:12190 - contained in read 510181 0- 16240 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8130/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2312:7724 - closest read 508291 ( +199) 2113:11091 ( +3367) (contained) saved region 2312:7724 - closest 5' read 508291 ( +199) 2113:11091 ( +3367) saved region 2312:7724 - closest 3' read 508291 ( +199) 2113:11091 ( +3367) search for confused edges: discard region 2312:7724 - no confusion in best edges Annotating repeats in reads for tig 8131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8133/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1510:2513 - contained in read 133844 0- 5743 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8134/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6371:8255 - contained in read 464114 2324- 8257 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8135/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8138/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8139/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8140/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 584:5649 - closest read 78848 ( +358) 226:5649 ( +0) (contained) saved region 584:5649 - closest 5' read 78848 ( +358) 226:5649 ( +0) saved region 584:5649 - closest 3' read 78848 ( +358) 226:5649 ( +0) search for confused edges: discard region 584:5649 - no confusion in best edges Annotating repeats in reads for tig 8141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8146/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8149/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11090:12168 - contained in read 137297 7666- 15048 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8150/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8153/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 1904:3826 - contained in read 110490 662- 7481 discard region 16428:18966 - contained in read 199638 5561- 21589 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8154/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8155/90584. Annotated with 72 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4870:10524 - closest 5' read 362255 ( +2058) 2812:8717 ( -1807) saved region 4870:10524 - closest 3' read 372459 ( -1465) 6335:12463 ( +1939) search for confused edges: discard region 4870:10524 - no confusion in best edges Annotating repeats in reads for tig 8156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8157/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6022:7470 - contained in read 280683 374- 8776 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8160/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5308:6418 - contained in read 403729 3601- 9159 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8161/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8174/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2397:2969 - contained in read 226537 0- 5887 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8177/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5503:4266 - contained in read 419484 326- 5948 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8179/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7:2630 - contained in read 140489 0- 8159 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8181/90584. Annotated with 1148 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1436:7205 - closest read 529937 ( +66) 1370:7205 ( +0) (contained) saved region 1436:7205 - closest 5' read 529937 ( +66) 1370:7205 ( +0) saved region 1436:7205 - closest 3' read 529937 ( +66) 1370:7205 ( +0) search for confused edges: discard region 1436:7205 - no confusion in best edges Annotating repeats in reads for tig 8182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8190/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8193/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. discard region 6004:9186 - contained in read 253351 5258- 9186 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8196/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8200/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 939:2075 - closest read 441815 ( +47) 892:6856 ( +4781) (contained) saved region 939:2075 - closest read 441820 ( +47) 892:6853 ( +4778) (contained) saved region 939:2075 - closest read 441816 ( +45) 894:6912 ( +4837) (contained) saved region 939:2075 - closest read 441817 ( +34) 905:6924 ( +4849) (contained) saved region 939:2075 - closest 5' read 441817 ( +34) 905:6924 ( +4849) saved region 939:2075 - closest 3' read 441815 ( +47) 892:6856 ( +4781) search for confused edges: discard region 939:2075 - no confusion in best edges Annotating repeats in reads for tig 8201/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8203/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 512:2863 - contained in read 143145 0- 7181 discard region 3171:3802 - contained in read 143145 0- 7181 discard region 4181:7206 - contained in read 49918 180- 9632 discard region 10178:11281 - contained in read 419391 4189- 13529 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8206/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5227:5806 - contained in read 143842 0- 7093 discard region 6381:7407 - contained in read 178959 5238- 9199 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8208/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6004:4999 - contained in read 423351 4476- 6407 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8209/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4620:7377 - contained in read 143990 0- 7398 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8212/90584. Annotated with 80 overlaps. Scan reads to discard spanned repeats. discard region 4181:8477 - contained in read 323025 0- 9600 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8213/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8214/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8215/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8217/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1:593 - contained in read 145367 0- 8588 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8223/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8225/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8226/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8227/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8232/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8235/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8237/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6086:5275 - contained in read 255366 274- 6113 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8239/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8240/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6409:9434 - contained in read 148061 5591- 12131 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8243/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8248/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2537:6509 - contained in read 358051 0- 9559 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8252/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8253/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8257/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8259/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1844:8264 - contained in read 525866 79- 8264 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8263/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8277/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5711:5144 - contained in read 236509 65- 5711 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8283/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8290/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 690:5454 - closest read 155551 ( +123) 567:5462 ( +8) (contained) saved region 690:5454 - closest read 155554 ( +101) 589:5952 ( +498) (contained) saved region 690:5454 - closest read 155552 ( +84) 606:6064 ( +610) (contained) saved region 690:5454 - closest read 155553 ( +55) 635:6065 ( +611) (contained) saved region 690:5454 - closest 5' read 155553 ( +55) 635:6065 ( +611) saved region 690:5454 - closest 3' read 155551 ( +123) 567:5462 ( +8) search for confused edges: discard region 690:5454 - no confusion in best edges Annotating repeats in reads for tig 8291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8298/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5290:8130 - closest read 48717 ( +0) 5290:8144 ( +14) (contained) saved region 5290:8130 - closest 5' read 48717 ( +0) 5290:8144 ( +14) saved region 5290:8130 - closest 3' read 48717 ( +0) 5290:8144 ( +14) search for confused edges: discard region 5290:8130 - no confusion in best edges Annotating repeats in reads for tig 8299/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8301/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3043:7120 - closest 5' read 156805 ( +3043) 0:6761 ( -359) saved region 3043:7120 - closest 3' read 122398 ( -42) 3085:14383 ( +7263) search for confused edges: tig 8301 read 156805 pos 0-6761 NOT confused by 3' edge to read 426181 - best edge read 122398 len 3676 erate 0.0367 score 3541.09 - alt edge len 1286 erate 0.0383 score 1236.75 - absdiff 2304.34 percdiff 96.4597 discard region 3043:7120 - no confusion in best edges Annotating repeats in reads for tig 8302/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 6115:3259 - contained in read 465564 0- 7136 discard region 6292:4321 - contained in read 465564 0- 7136 discard region 7126:9289 - contained in read 106800 2544- 10028 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8305/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8306/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8309/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8311/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8312/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8318/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1897:2988 - closest read 284049 ( +1897) 0:2996 ( +8) (contained) saved region 1897:2988 - closest 5' read 284049 ( +1897) 0:2996 ( +8) saved region 1897:2988 - closest 3' read 284049 ( +1897) 0:2996 ( +8) search for confused edges: discard region 1897:2988 - no confusion in best edges Annotating repeats in reads for tig 8320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8323/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7470:6969 - contained in read 446890 1598- 8792 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8325/90584. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 9918:13237 - contained in read 507692 7272- 13803 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8330/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8334/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 4792:6803 - contained in read 492620 3738- 9456 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8338/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8339/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 3166:5280 - contained in read 162614 0- 7464 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8343/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 4296:6617 - contained in read 434934 3442- 9263 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8345/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5240:9639 - contained in read 163258 1152- 9772 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8350/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1859:2398 - contained in read 164030 807- 2803 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8351/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2875:6095 - contained in read 440460 527- 6131 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8357/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3932:3353 - contained in read 93680 166- 3932 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8363/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8364/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8366/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8367/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8369/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 9556:10571 - contained in read 384796 3738- 15330 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8373/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4125:3586 - contained in read 197242 646- 4129 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8377/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6505:7273 - closest 5' read 526892 ( +6487) 18:7263 ( -10) saved region 6505:7273 - closest 3' read 168748 ( -101) 6606:12710 ( +5437) saved region 11875:19570 - closest 5' read 168744 ( +5268) 6607:12739 ( -6831) saved region 11875:19570 - closest 3' read 374365 ( -64) 11939:19713 ( +143) search for confused edges: discard region 6505:7273 - no confusion in best edges discard region 11875:19570 - no confusion in best edges Annotating repeats in reads for tig 8380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8383/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8385/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8386/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8387/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8390/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8392/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8393/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8394/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8407/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8408/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8411/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1054:285 - contained in read 173520 0- 1243 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8413/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7306:4506 - contained in read 174189 0- 5781 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8418/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8419/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8421/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8429/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 4621:7748 - contained in read 176908 6- 7748 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8430/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 10622:13340 - contained in read 177164 6312- 13349 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8431/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8433/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8435/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8436/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8441/90584. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 6550:8158 - contained in read 178538 0- 10685 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8442/90584. Annotated with 73 overlaps. Scan reads to discard spanned repeats. discard region 7197:7922 - contained in read 236517 3360- 10576 thickest edges to the repeat regions: saved region 38:5662 - closest 5' read 406632 ( +38) 0:5651 ( -11) saved region 38:5662 - closest 3' read 11164 ( -2) 40:5667 ( +5) search for confused edges: tig 8442 read 236517 pos 3360-10576 IS confused by 5' edge to read 158688 - best edge read 406632 len 2291 erate 0.0412 score 2196.61 - alt edge len 1615 erate 0.0194 score 1583.67 - absdiff 612.94 percdiff 32.4284 tig 8442 read 236517 pos 3360-10576 IS confused by 5' edge to read 196949 - best edge read 406632 len 2291 erate 0.0412 score 2196.61 - alt edge len 1461 erate 0.0385 score 1404.75 - absdiff 791.86 percdiff 43.9755 tig 8442 read 236517 pos 3360-10576 IS confused by 5' edge to read 350102 - best edge read 406632 len 2291 erate 0.0412 score 2196.61 - alt edge len 1900 erate 0.0360 score 1831.60 - absdiff 365.01 percdiff 18.1227 tig 8442 read 236517 pos 3360-10576 IS confused by 5' edge to read 385462 - best edge read 406632 len 2291 erate 0.0412 score 2196.61 - alt edge len 2287 erate 0.0408 score 2193.69 - absdiff 2.92 percdiff 0.1330 tig 8442 read 236517 pos 3360-10576 IS confused by 5' edge to read 406248 - best edge read 406632 len 2291 erate 0.0412 score 2196.61 - alt edge len 2149 erate 0.0169 score 2112.68 - absdiff 83.93 percdiff 3.8953 tig 8442 read 236517 pos 3360-10576 IS confused by 5' edge to read 499114 - best edge read 406632 len 2291 erate 0.0412 score 2196.61 - alt edge len 2172 erate 0.0171 score 2134.86 - absdiff 61.75 percdiff 2.8513 saved region 38:5662 - 6 best edges are potentially confused break tig 8442 into up to 2 pieces: 0 6162 repeat (length 6162) 6162 10605 unique (length 4443) Creating Unitig 91265 Creating Unitig 91266 For tig 8442 repeat region 0 6162 - 25/ 0 reads repeat/unique - unitig 91265 created. For tig 8442 unique region 6162 10605 - 0/ 9 reads repeat/unique - unitig 91266 created. Annotating repeats in reads for tig 8443/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8446/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8451/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8453/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8455/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8457/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8465/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8469/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8470/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8481/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8485/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8489/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8490/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8491/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 771:4236 - contained in read 186071 0- 6227 thickest edges to the repeat regions: saved region 7685:13943 - closest 5' read 458494 ( +807) 6878:11453 ( -2490) saved region 7685:13943 - closest 3' read 73416 ( -5) 7690:13947 ( +4) search for confused edges: discard region 7685:13943 - no confusion in best edges Annotating repeats in reads for tig 8492/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 4147:6303 - contained in read 447831 1575- 9095 discard region 9197:8281 - contained in read 447831 1575- 9095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8494/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8495/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 624:4240 - contained in read 142469 0- 4995 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8498/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2078:2883 - contained in read 186737 261- 2891 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8500/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8502/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5368:7287 - contained in read 34061 0- 9098 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8504/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8509/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8511/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8513/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8514/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 0:3104 - contained in read 81084 0- 6437 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8516/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8519/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 1921:6210 - contained in read 219283 968- 9862 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8526/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8528/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2076:1074 - contained in read 189135 0- 4318 discard region 2948:4769 - contained in read 458330 1031- 5716 discard region 4880:5743 - contained in read 189136 1667- 7062 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8535/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 849:1972 - contained in read 189796 0- 5714 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8538/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8540/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8541/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8547/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2700:4308 - contained in read 466313 2- 6312 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8551/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8556/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8558/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 750:1888 - contained in read 367912 0- 6663 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8568/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3567:4991 - contained in read 8481 0- 6418 discard region 5241:5951 - contained in read 465202 3472- 6897 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8573/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8576/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8579/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 1257:6441 - contained in read 152079 1- 13997 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8582/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 13231:11335 - contained in read 118174 671- 15549 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8584/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8585/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8586/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8589/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 840:6015 - closest 5' read 196652 ( +575) 265:3570 ( -2445) saved region 840:6015 - closest 3' read 512921 ( -10) 850:6293 ( +278) search for confused edges: discard region 840:6015 - no confusion in best edges Annotating repeats in reads for tig 8590/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:1226 - contained in read 197004 0- 3886 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8598/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2942:5539 - contained in read 495676 0- 6129 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8599/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8600/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1820:254 - contained in read 199629 0- 2038 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8608/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8610/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8613/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3540:1773 - contained in read 141027 0- 6708 discard region 3967:2004 - contained in read 141027 0- 6708 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8614/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8615/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 0:5297 - contained in read 201467 0- 5889 discard region 5306:5899 - contained in read 58004 1963- 9601 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8617/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 773:3514 - contained in read 60747 0- 5023 discard region 10014:10789 - contained in read 137392 3429- 12115 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8621/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2682:5294 - closest read 75168 ( +2649) 33:5303 ( +9) (contained) saved region 2682:5294 - closest read 294347 ( +2629) 53:5306 ( +12) (contained) saved region 2682:5294 - closest read 75169 ( +536) 2146:5314 ( +20) (contained) saved region 2682:5294 - closest read 363608 ( +10) 2672:5303 ( +9) (contained) saved region 2682:5294 - closest 5' read 75169 ( +536) 2146:5314 ( +20) saved region 2682:5294 - closest 3' read 75168 ( +2649) 33:5303 ( +9) search for confused edges: tig 8621 read 164665 pos 23-5184 IS confused by 3' edge to read 99793 - best edge read 391832 len 2467 erate 0.0093 score 2444.06 - alt edge len 2498 erate 0.0276 score 2429.06 - absdiff 15.00 percdiff 0.6157 tig 8621 read 391832 pos 2717-13363 IS confused by 5' edge to read 305141 - best edge read 164665 len 2466 erate 0.0093 score 2443.07 - alt edge len 2163 erate 0.0172 score 2125.80 - absdiff 317.27 percdiff 13.8883 saved region 2682:5294 - 2 best edges are potentially confused break tig 8621 into up to 3 pieces: 0 2182 unique (length 2182) 2182 5794 repeat (length 3612) 5794 17576 unique (length 11782) Creating Unitig 91267 Creating Unitig 91268 Creating Unitig 91269 For tig 8621 unique region 0 2182 - 0/ 12 reads repeat/unique - unitig 91267 created. For tig 8621 repeat region 2182 5794 - 12/ 0 reads repeat/unique - unitig 91268 created. For tig 8621 unique region 5794 17576 - 0/ 3 reads repeat/unique - unitig 91269 created. Annotating repeats in reads for tig 8624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8627/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8642/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2225:10726 - closest read 195107 ( +85) 2140:10743 ( +17) (contained) saved region 2225:10726 - closest 5' read 195107 ( +85) 2140:10743 ( +17) saved region 2225:10726 - closest 3' read 195107 ( +85) 2140:10743 ( +17) search for confused edges: discard region 2225:10726 - no confusion in best edges Annotating repeats in reads for tig 8643/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3601:5111 - contained in read 193727 415- 5971 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8653/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8658/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3268:5193 - contained in read 446625 0- 10992 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8661/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4104:3092 - contained in read 207162 0- 7019 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8663/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4303:5841 - closest 5' read 501140 ( +4303) 0:5276 ( -565) saved region 4303:5841 - closest 3' read 207991 ( -37) 4340:5987 ( +146) search for confused edges: discard region 4303:5841 - no confusion in best edges Annotating repeats in reads for tig 8664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8674/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8677/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1224:5550 - closest read 26681 ( +492) 732:5560 ( +10) (contained) saved region 1224:5550 - closest 5' read 26681 ( +492) 732:5560 ( +10) saved region 1224:5550 - closest 3' read 26681 ( +492) 732:5560 ( +10) search for confused edges: discard region 1224:5550 - no confusion in best edges Annotating repeats in reads for tig 8679/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8683/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8684/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8696/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8700/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8704/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 5341:8672 - contained in read 77765 3187- 8672 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8706/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8712/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8714/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8721/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8726/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8730/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8731/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2333:2959 - contained in read 247473 0- 6578 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8734/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8741/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6186:7290 - contained in read 104380 426- 8985 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8743/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8749/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8752/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3814:8732 - contained in read 429585 250- 8747 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8755/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5796:6488 - contained in read 329999 569- 6488 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8759/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6089:6614 - contained in read 517459 4286- 7067 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8763/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4056:6180 - contained in read 502623 625- 8691 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8771/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2:1400 - contained in read 222872 0- 2500 thickest edges to the repeat regions: saved region 5505:8558 - closest 5' read 466307 ( +3763) 1742:7499 ( -1059) saved region 5505:8558 - closest 3' read 299474 ( -6) 5511:9476 ( +918) search for confused edges: discard region 5505:8558 - no confusion in best edges Annotating repeats in reads for tig 8772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8775/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4504:3916 - contained in read 357203 0- 5081 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8779/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8780/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3013:4269 - contained in read 224485 0- 6232 thickest edges to the repeat regions: saved region 5140:6365 - closest read 340894 ( +11) 5129:7008 ( +643) (contained) saved region 5140:6365 - closest 5' read 340894 ( +11) 5129:7008 ( +643) saved region 5140:6365 - closest 3' read 340894 ( +11) 5129:7008 ( +643) search for confused edges: discard region 5140:6365 - no confusion in best edges Annotating repeats in reads for tig 8783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8785/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8787/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8789/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8791/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8793/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8801/90584. Annotated with 41 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1382:4866 - closest 5' read 226982 ( +1382) 0:3400 ( -1466) saved region 1382:4866 - closest 3' read 515781 ( -1) 1383:10499 ( +5633) search for confused edges: tig 8801 read 226982 pos 0-3400 IS confused by 3' edge to read 347809 - best edge read 515781 len 2017 erate 0.0397 score 1936.93 - alt edge len 628 erate 0.0367 score 604.95 - absdiff 1331.97 percdiff 104.8023 saved region 1382:4866 - 1 best edges are potentially confused break tig 8801 into up to 3 pieces: 0 882 unique (length 882) 882 5366 repeat (length 4484) 5366 10528 unique (length 5162) Creating Unitig 91270 Creating Unitig 91271 Creating Unitig 91272 For tig 8801 unique region 0 882 - 0/ 1 reads repeat/unique - unitig 91270 created. For tig 8801 repeat region 882 5366 - 1/ 0 reads repeat/unique - unitig 91272 created. For tig 8801 unique region 5366 10528 - 0/ 3 reads repeat/unique - unitig 91271 created. Annotating repeats in reads for tig 8802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8808/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8811/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8818/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8822/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4845:8035 - closest 5' read 529837 ( +3) 4842:7686 ( -349) saved region 4845:8035 - closest 3' read 316697 ( -100) 4945:9304 ( +1269) search for confused edges: discard region 4845:8035 - no confusion in best edges Annotating repeats in reads for tig 8824/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 11921:10863 - contained in read 88117 4433- 11578 thickest edges to the repeat regions: saved region 4105:7622 - closest read 38399 ( +38) 4067:9973 ( +2351) (contained) saved region 4105:7622 - closest 5' read 38399 ( +38) 4067:9973 ( +2351) saved region 4105:7622 - closest 3' read 38399 ( +38) 4067:9973 ( +2351) search for confused edges: discard region 4105:7622 - no confusion in best edges Annotating repeats in reads for tig 8825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8830/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:2404 - contained in read 338514 0- 5434 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8832/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8834/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 4512:3636 - contained in read 233103 0- 5563 discard region 5582:8996 - contained in read 81408 5033- 9874 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8837/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 0:6257 - contained in read 497406 0- 9349 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8844/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8845/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5317:4274 - contained in read 234699 0- 7662 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8848/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8857/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1310:3071 - contained in read 237165 0- 4236 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8859/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5704:14550 - closest read 333099 ( +0) 5704:15668 ( +1118) (contained) saved region 5704:14550 - closest 5' read 333099 ( +0) 5704:15668 ( +1118) saved region 5704:14550 - closest 3' read 333099 ( +0) 5704:15668 ( +1118) search for confused edges: discard region 5704:14550 - no confusion in best edges Annotating repeats in reads for tig 8860/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 673:5394 - closest read 237843 ( +466) 207:5612 ( +218) (contained) saved region 673:5394 - closest read 237839 ( +269) 404:5686 ( +292) (contained) saved region 673:5394 - closest 5' read 237839 ( +269) 404:5686 ( +292) saved region 673:5394 - closest 3' read 237843 ( +466) 207:5612 ( +218) search for confused edges: discard region 673:5394 - no confusion in best edges Annotating repeats in reads for tig 8861/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8863/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8872/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8873/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8878/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 5672:6409 - contained in read 359665 3814- 9463 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8883/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8889/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8891/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 913:0 - contained in read 241200 0- 5474 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8896/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8902/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 7138:2816 - contained in read 243820 0- 4098 thickest edges to the repeat regions: saved region 7407:11919 - closest 5' read 259050 ( +5038) 2369:10026 ( -1893) saved region 7407:11919 - closest 3' read 387705 ( -376) 7783:11919 ( +0) search for confused edges: tig 8902 read 387705 pos 7783-11919 IS confused by 3' edge to read 7778 - best edge read 259050 len 2228 erate 0.0386 score 2142.00 - alt edge len 1462 erate 0.0370 score 1407.91 - absdiff 734.09 percdiff 41.3585 tig 8902 read 387705 pos 7783-11919 IS confused by 3' edge to read 7782 - best edge read 259050 len 2228 erate 0.0386 score 2142.00 - alt edge len 1370 erate 0.0358 score 1320.95 - absdiff 821.05 percdiff 47.4188 tig 8902 read 387705 pos 7783-11919 IS confused by 3' edge to read 113059 - best edge read 259050 len 2228 erate 0.0386 score 2142.00 - alt edge len 977 erate 0.0308 score 946.91 - absdiff 1195.09 percdiff 77.3795 saved region 7407:11919 - 3 best edges are potentially confused break tig 8902 into up to 2 pieces: 0 6907 unique (length 6907) 6907 11919 repeat (length 5012) Creating Unitig 91273 Creating Unitig 91274 For tig 8902 unique region 0 6907 - 0/ 25 reads repeat/unique - unitig 91273 created. For tig 8902 repeat region 6907 11919 - 3/ 0 reads repeat/unique - unitig 91274 created. Annotating repeats in reads for tig 8905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8910/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8912/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8915/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8916/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8920/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8922/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8923/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1899:7278 - closest read 46209 ( +1188) 711:7706 ( +428) (contained) saved region 1899:7278 - closest 5' read 46209 ( +1188) 711:7706 ( +428) saved region 1899:7278 - closest 3' read 46209 ( +1188) 711:7706 ( +428) search for confused edges: discard region 1899:7278 - no confusion in best edges Annotating repeats in reads for tig 8927/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8939/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8947/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8949/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8953/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11602:9049 - contained in read 250541 5903- 11506 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8954/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8955/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8958/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 0:4407 - contained in read 153805 0- 6762 discard region 5554:11133 - contained in read 251102 576- 12782 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8960/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9675:5247 - contained in read 374143 0- 6211 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8961/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8963/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8974/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8977/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8984/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8986/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8987/90584. Annotated with 198 overlaps. Scan reads to discard spanned repeats. discard region 4134:6317 - contained in read 255221 0- 6317 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8990/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 12945:16433 - contained in read 161609 11341- 16433 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8992/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8996/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 8999/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9001/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9003/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9005/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 3245:5756 - contained in read 257283 0- 5756 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9006/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 0:524 - contained in read 340740 0- 2079 discard region 2090:615 - contained in read 340740 0- 2079 discard region 2595:3201 - contained in read 143587 1856- 6586 discard region 3299:4961 - contained in read 143587 1856- 6586 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9007/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 12109:13465 - contained in read 392457 8267- 16579 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9010/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3012:6998 - closest read 324182 ( +463) 2549:8447 ( +1449) (contained) saved region 3012:6998 - closest read 324183 ( +461) 2551:8508 ( +1510) (contained) saved region 3012:6998 - closest read 179175 ( +461) 2551:7016 ( +18) (contained) saved region 3012:6998 - closest read 324184 ( +441) 2571:8533 ( +1535) (contained) saved region 3012:6998 - closest read 469474 ( +437) 2575:7018 ( +20) (contained) saved region 3012:6998 - closest 5' read 324184 ( +441) 2571:8533 ( +1535) saved region 3012:6998 - closest 3' read 324182 ( +463) 2549:8447 ( +1449) search for confused edges: discard region 3012:6998 - no confusion in best edges Annotating repeats in reads for tig 9011/90584. Annotated with 51 overlaps. Scan reads to discard spanned repeats. discard region 5508:12040 - contained in read 430278 4924- 17246 discard region 12966:19347 - contained in read 258208 12453- 22949 thickest edges to the repeat regions: saved region 19756:26472 - closest read 208894 ( +4) 19752:30184 ( +3712) (contained) saved region 19756:26472 - closest 5' read 208894 ( +4) 19752:30184 ( +3712) saved region 19756:26472 - closest 3' read 208894 ( +4) 19752:30184 ( +3712) search for confused edges: discard region 19756:26472 - no confusion in best edges Annotating repeats in reads for tig 9014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9019/90584. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 1187:5683 - contained in read 270036 0- 6366 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9024/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9026/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9029/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5249:6975 - contained in read 209225 1- 6975 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9033/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9042/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5581:7781 - closest read 350777 ( +3) 5578:12206 ( +4425) (contained) saved region 5581:7781 - closest read 350776 ( +2) 5579:12301 ( +4520) (contained) saved region 5581:7781 - closest 5' read 350776 ( +2) 5579:12301 ( +4520) saved region 5581:7781 - closest 3' read 350777 ( +3) 5578:12206 ( +4425) search for confused edges: discard region 5581:7781 - no confusion in best edges Annotating repeats in reads for tig 9045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9047/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9055/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1711:6079 - closest read 348920 ( +855) 856:6472 ( +393) (contained) saved region 1711:6079 - closest 5' read 348920 ( +855) 856:6472 ( +393) saved region 1711:6079 - closest 3' read 348920 ( +855) 856:6472 ( +393) search for confused edges: discard region 1711:6079 - no confusion in best edges Annotating repeats in reads for tig 9057/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9062/90584. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 2:4518 - contained in read 411914 0- 9882 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9063/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7365:7980 - closest read 408192 ( +5919) 1446:7987 ( +7) (contained) saved region 7365:7980 - closest read 265810 ( +0) 7365:11907 ( +3927) (contained) saved region 7365:7980 - closest 5' read 265810 ( +0) 7365:11907 ( +3927) saved region 7365:7980 - closest 3' read 408192 ( +5919) 1446:7987 ( +7) search for confused edges: discard region 7365:7980 - no confusion in best edges Annotating repeats in reads for tig 9064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9069/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:7488 - contained in read 77572 0- 8052 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9071/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9074/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1612:9237 - closest 5' read 196683 ( +69) 1543:6216 ( -3021) saved region 1612:9237 - closest 3' read 480525 ( -52) 1664:9359 ( +122) search for confused edges: tig 9074 read 196683 pos 1543-6216 IS confused by 5' edge to read 296944 - best edge read 480525 len 4552 erate 0.0088 score 4511.94 - alt edge len 3820 erate 0.0121 score 3773.78 - absdiff 738.16 percdiff 17.8177 saved region 1612:9237 - 1 best edges are potentially confused break tig 9074 into up to 2 pieces: 0 1112 unique (length 1112) 1112 9359 repeat (length 8247) Creating Unitig 91275 Creating Unitig 91276 For tig 9074 unique region 0 1112 - 0/ 5 reads repeat/unique - unitig 91275 created. For tig 9074 repeat region 1112 9359 - 5/ 0 reads repeat/unique - unitig 91276 created. Annotating repeats in reads for tig 9075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9077/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9079/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9081/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9084/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9090/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 3853:5209 - contained in read 269694 0- 6115 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9095/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5810:6666 - contained in read 362331 4694- 7406 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9099/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9106/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1019:4482 - closest read 271511 ( +183) 836:4482 ( +0) (contained) saved region 1019:4482 - closest 5' read 271511 ( +183) 836:4482 ( +0) saved region 1019:4482 - closest 3' read 271511 ( +183) 836:4482 ( +0) search for confused edges: discard region 1019:4482 - no confusion in best edges Annotating repeats in reads for tig 9111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9113/90584. Annotated with 246 overlaps. Scan reads to discard spanned repeats. discard region 0:6798 - contained in read 439667 0- 8541 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9119/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. discard region 2522:9022 - contained in read 473450 8- 9022 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9129/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9138/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9139/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9144/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9154/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6034:5379 - contained in read 428909 0- 6926 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9160/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9167/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9174/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9176/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 1969:6125 - contained in read 388842 0- 6726 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9179/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1464:2669 - contained in read 279945 0- 7392 discard region 5416:4456 - contained in read 279945 0- 7392 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9184/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9190/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1085:2011 - contained in read 188127 0- 7627 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9193/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9196/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4233:3095 - contained in read 281463 0- 5265 discard region 4235:3129 - contained in read 281463 0- 5265 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9201/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9203/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 1658:6807 - contained in read 282432 36- 6846 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9205/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 10624:14137 - contained in read 282555 7443- 14137 thickest edges to the repeat regions: saved region 7389:8717 - closest read 445816 ( +7341) 48:8721 ( +4) (contained) saved region 7389:8717 - closest 5' read 445816 ( +7341) 48:8721 ( +4) saved region 7389:8717 - closest 3' read 445816 ( +7341) 48:8721 ( +4) search for confused edges: tig 9205 read 445818 pos 0-8688 IS confused by 5' edge to read 208327 - best edge read 517567 len 1246 erate 0.0378 score 1198.90 - alt edge len 1216 erate 0.0338 score 1174.90 - absdiff 24.00 percdiff 2.0222 saved region 7389:8717 - 1 best edges are potentially confused break tig 9205 into up to 3 pieces: 0 6889 unique (length 6889) 6889 9217 repeat (length 2328) 9217 14137 unique (length 4920) Creating Unitig 91277 Creating Unitig 91278 Creating Unitig 91279 For tig 9205 unique region 0 6889 - 0/ 6 reads repeat/unique - unitig 91277 created. For tig 9205 repeat region 6889 9217 - 1/ 0 reads repeat/unique - unitig 91278 created. For tig 9205 unique region 9217 14137 - 0/ 6 reads repeat/unique - unitig 91279 created. Annotating repeats in reads for tig 9209/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3939:6548 - contained in read 283134 41- 6548 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9211/90584. Annotated with 105 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5290:8719 - closest read 405732 ( +18) 5272:8723 ( +4) (contained) saved region 5290:8719 - closest 5' read 405732 ( +18) 5272:8723 ( +4) saved region 5290:8719 - closest 3' read 405732 ( +18) 5272:8723 ( +4) search for confused edges: tig 9211 read 283645 pos 5851-12568 IS confused by 3' edge to read 366257 - best edge read 405733 len 2860 erate 0.0416 score 2741.02 - alt edge len 1460 erate 0.0311 score 1414.59 - absdiff 1326.43 percdiff 63.8379 tig 9211 read 283645 pos 5851-12568 IS confused by 3' edge to read 371677 - best edge read 405733 len 2860 erate 0.0416 score 2741.02 - alt edge len 1611 erate 0.0301 score 1562.51 - absdiff 1178.52 percdiff 54.7697 saved region 5290:8719 - 2 best edges are potentially confused break tig 9211 into up to 3 pieces: 0 4790 unique (length 4790) 4790 9219 repeat (length 4429) 9219 12581 unique (length 3362) Creating Unitig 91280 Creating Unitig 91281 Creating Unitig 91282 For tig 9211 unique region 0 4790 - 0/ 2 reads repeat/unique - unitig 91280 created. For tig 9211 repeat region 4790 9219 - 22/ 0 reads repeat/unique - unitig 91281 created. For tig 9211 unique region 9219 12581 - 0/ 2 reads repeat/unique - unitig 91282 created. Annotating repeats in reads for tig 9215/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9218/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9223/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9225/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9226/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9228/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1470:8210 - closest 5' read 384627 ( +1147) 323:7080 ( -1130) saved region 1470:8210 - closest 3' read 284979 ( -925) 2395:8223 ( +13) search for confused edges: tig 9228 read 284979 pos 2395-8223 IS confused by 5' edge to read 292241 - best edge read 284978 len 5798 erate 0.0153 score 5709.29 - alt edge len 5610 erate 0.0418 score 5375.50 - absdiff 333.79 percdiff 6.0225 saved region 1470:8210 - 1 best edges are potentially confused break tig 9228 into up to 2 pieces: 0 970 unique (length 970) 970 8223 repeat (length 7253) Creating Unitig 91283 Creating Unitig 91284 For tig 9228 unique region 0 970 - 0/ 2 reads repeat/unique - unitig 91283 created. For tig 9228 repeat region 970 8223 - 15/ 0 reads repeat/unique - unitig 91284 created. Annotating repeats in reads for tig 9229/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3363:4482 - contained in read 333917 19- 5019 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9230/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2441:4004 - closest read 310253 ( +92) 2349:7198 ( +3194) (contained) saved region 2441:4004 - closest read 408869 ( +91) 2350:9301 ( +5297) (contained) saved region 2441:4004 - closest read 310252 ( +57) 2384:4606 ( +602) (contained) saved region 2441:4004 - closest read 408871 ( +54) 2387:9383 ( +5379) (contained) saved region 2441:4004 - closest 5' read 408871 ( +54) 2387:9383 ( +5379) saved region 2441:4004 - closest 3' read 310253 ( +92) 2349:7198 ( +3194) search for confused edges: discard region 2441:4004 - no confusion in best edges Annotating repeats in reads for tig 9231/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4787:7679 - contained in read 285576 11- 8465 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9244/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9248/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9250/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1:4640 - contained in read 287919 0- 5746 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9251/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9257/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. discard region 14:3074 - contained in read 333267 0- 6153 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9262/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9266/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5980:6542 - closest read 418876 ( +5980) 0:6715 ( +173) (contained) saved region 5980:6542 - closest read 418875 ( +5979) 1:6698 ( +156) (contained) saved region 5980:6542 - closest read 473023 ( +0) 5980:8659 ( +2117) (contained) saved region 5980:6542 - closest 5' read 473023 ( +0) 5980:8659 ( +2117) saved region 5980:6542 - closest 3' read 418876 ( +5980) 0:6715 ( +173) search for confused edges: discard region 5980:6542 - no confusion in best edges Annotating repeats in reads for tig 9267/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9270/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 346:2290 - contained in read 290198 0- 7539 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9275/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6830:8766 - contained in read 66196 5191- 8766 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9276/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9278/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9288/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 919:3884 - closest read 430060 ( +919) 0:4311 ( +427) (contained) saved region 919:3884 - closest 5' read 430060 ( +919) 0:4311 ( +427) saved region 919:3884 - closest 3' read 430060 ( +919) 0:4311 ( +427) search for confused edges: discard region 919:3884 - no confusion in best edges Annotating repeats in reads for tig 9289/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9291/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1313:2372 - contained in read 94367 426- 2990 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9298/90584. Annotated with 44 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5057:9119 - closest read 33587 ( +3790) 1267:9186 ( +67) (contained) saved region 5057:9119 - closest read 33588 ( +3778) 1279:9163 ( +44) (contained) saved region 5057:9119 - closest read 293918 ( +3) 5054:10232 ( +1113) (contained) saved region 5057:9119 - closest read 293916 ( +3) 5054:10229 ( +1110) (contained) saved region 5057:9119 - closest 5' read 293918 ( +3) 5054:10232 ( +1113) saved region 5057:9119 - closest 3' read 33587 ( +3790) 1267:9186 ( +67) search for confused edges: discard region 5057:9119 - no confusion in best edges Annotating repeats in reads for tig 9300/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3746:1 - contained in read 160283 0- 5239 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9301/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9305/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9309/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9311/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9314/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9315/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 1847:4648 - contained in read 250972 0- 6035 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9316/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9318/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5070:7666 - closest read 223247 ( +265) 4805:7666 ( +0) (contained) saved region 5070:7666 - closest 5' read 223247 ( +265) 4805:7666 ( +0) saved region 5070:7666 - closest 3' read 223247 ( +265) 4805:7666 ( +0) search for confused edges: discard region 5070:7666 - no confusion in best edges Annotating repeats in reads for tig 9320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9321/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9330/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 8876:11804 - contained in read 297704 6370- 11885 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9332/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 10842:15404 - contained in read 284538 8806- 15404 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9334/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5237:9660 - contained in read 36744 2876- 12216 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9343/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9347/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9350/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9362/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 5699:7883 - contained in read 525556 1575- 8640 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9364/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9368/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9369/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9370/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 2790:4239 - contained in read 304101 235- 6198 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9372/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6109:10855 - contained in read 304615 2780- 16098 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9376/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9379/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9383/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9385/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9386/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9388/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9389/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9391/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 5659:4010 - contained in read 307044 0- 11342 discard region 6553:8155 - contained in read 307044 0- 11342 discard region 8868:9566 - contained in read 307044 0- 11342 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9392/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9398/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9400/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9405/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 88:3635 - contained in read 308677 0- 9998 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9407/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2926:8107 - closest 5' read 308965 ( +2926) 0:6656 ( -1451) saved region 2926:8107 - closest 3' read 507521 ( -1) 2927:8138 ( +31) search for confused edges: tig 9407 read 308965 pos 0-6656 IS confused by 3' edge to read 50287 - best edge read 507521 len 3729 erate 0.0368 score 3591.77 - alt edge len 2143 erate 0.0345 score 2069.07 - absdiff 1522.71 percdiff 53.7979 tig 9407 read 308965 pos 0-6656 IS confused by 3' edge to read 50290 - best edge read 507521 len 3729 erate 0.0368 score 3591.77 - alt edge len 2155 erate 0.0353 score 2078.93 - absdiff 1512.84 percdiff 53.3565 tig 9407 read 308965 pos 0-6656 IS confused by 3' edge to read 181817 - best edge read 507521 len 3729 erate 0.0368 score 3591.77 - alt edge len 3018 erate 0.0240 score 2945.57 - absdiff 646.20 percdiff 19.7697 tig 9407 read 308965 pos 0-6656 IS confused by 3' edge to read 340517 - best edge read 507521 len 3729 erate 0.0368 score 3591.77 - alt edge len 2909 erate 0.0278 score 2828.13 - absdiff 763.64 percdiff 23.7899 tig 9407 read 308965 pos 0-6656 IS confused by 3' edge to read 400350 - best edge read 507521 len 3729 erate 0.0368 score 3591.77 - alt edge len 3687 erate 0.0279 score 3584.13 - absdiff 7.64 percdiff 0.2129 tig 9407 read 308965 pos 0-6656 IS confused by 3' edge to read 506347 - best edge read 507521 len 3729 erate 0.0368 score 3591.77 - alt edge len 2388 erate 0.0416 score 2288.66 - absdiff 1303.11 percdiff 44.3203 saved region 2926:8107 - 6 best edges are potentially confused break tig 9407 into up to 2 pieces: 0 2426 unique (length 2426) 2426 8138 repeat (length 5712) Creating Unitig 91285 Creating Unitig 91286 For tig 9407 unique region 0 2426 - 0/ 5 reads repeat/unique - unitig 91285 created. For tig 9407 repeat region 2426 8138 - 21/ 0 reads repeat/unique - unitig 91286 created. Annotating repeats in reads for tig 9408/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6705:5750 - contained in read 190838 998- 7294 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9410/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9413/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9415/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3824:35 - contained in read 309883 0- 6348 discard region 4031:2688 - contained in read 309883 0- 6348 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9417/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4312:5702 - contained in read 310106 14- 5707 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9419/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4777:8391 - closest 5' read 180017 ( +668) 4109:6566 ( -1825) saved region 4777:8391 - closest 3' read 71430 ( -564) 5341:10404 ( +2013) search for confused edges: tig 9419 read 310538 pos 12-6542 IS confused by 3' edge to read 489187 - best edge read 71430 len 1201 erate 0.0292 score 1165.93 - alt edge len 845 erate 0.0261 score 822.95 - absdiff 342.99 percdiff 34.4904 tig 9419 read 310538 pos 12-6542 IS confused by 3' edge to read 489188 - best edge read 71430 len 1201 erate 0.0292 score 1165.93 - alt edge len 799 erate 0.0313 score 773.99 - absdiff 391.94 percdiff 40.4078 tig 9419 read 310538 pos 12-6542 IS confused by 3' edge to read 489189 - best edge read 71430 len 1201 erate 0.0292 score 1165.93 - alt edge len 864 erate 0.0244 score 842.92 - absdiff 323.01 percdiff 32.1589 saved region 4777:8391 - 3 best edges are potentially confused break tig 9419 into up to 3 pieces: 0 4277 unique (length 4277) 4277 8891 repeat (length 4614) 8891 10404 unique (length 1513) Creating Unitig 91287 Creating Unitig 91288 Creating Unitig 91289 For tig 9419 unique region 0 4277 - 0/ 9 reads repeat/unique - unitig 91287 created. For tig 9419 repeat region 4277 8891 - 2/ 0 reads repeat/unique - unitig 91288 created. For tig 9419 unique region 8891 10404 - 0/ 2 reads repeat/unique - unitig 91289 created. Annotating repeats in reads for tig 9421/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9441/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9445/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9451/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2630:6336 - contained in read 516874 0- 7340 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9452/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8276:3876 - contained in read 24708 0- 5810 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9453/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9456/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 4616:7544 - contained in read 314336 2- 7544 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9457/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9476/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2331:1719 - contained in read 317934 0- 2380 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9479/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6473:7583 - contained in read 461131 0- 12990 discard region 14563:15623 - contained in read 318330 9921- 15626 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9481/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4028:8166 - closest 5' read 318683 ( +3995) 33:6838 ( -1328) saved region 4028:8166 - closest 3' read 223095 ( -1175) 5203:11923 ( +3757) search for confused edges: discard region 4028:8166 - no confusion in best edges Annotating repeats in reads for tig 9487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9490/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9513/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9516/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 2025:3349 - contained in read 530254 0- 6836 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9530/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9535/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9536/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9538/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9551/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9553/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:1641 - contained in read 332018 0- 8132 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9583/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 498:5429 - closest read 414221 ( +498) 0:5466 ( +37) (contained) saved region 498:5429 - closest read 414223 ( +495) 3:5449 ( +20) (contained) saved region 498:5429 - closest read 414224 ( +488) 10:5464 ( +35) (contained) saved region 498:5429 - closest read 414222 ( +484) 14:5469 ( +40) (contained) saved region 498:5429 - closest read 414218 ( +411) 87:5460 ( +31) (contained) saved region 498:5429 - closest read 414220 ( +403) 95:5460 ( +31) (contained) saved region 498:5429 - closest 5' read 414222 ( +484) 14:5469 ( +40) saved region 498:5429 - closest 3' read 414221 ( +498) 0:5466 ( +37) search for confused edges: discard region 498:5429 - no confusion in best edges Annotating repeats in reads for tig 9588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9592/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 1:4686 - contained in read 233171 0- 5739 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9594/90584. Annotated with 318 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:12385 - closest 5' read 413944 ( +0) 0:8076 ( -4309) saved region 0:12385 - closest 3' read 334893 ( -6214) 6214:12385 ( +0) search for confused edges: tig 9594 read 334893 pos 6214-12385 IS confused by 5' edge to read 83188 - best edge read 413944 len 1862 erate 0.0427 score 1782.49 - alt edge len 1097 erate 0.0340 score 1059.70 - absdiff 722.79 percdiff 50.8614 tig 9594 read 334893 pos 6214-12385 IS confused by 5' edge to read 150921 - best edge read 413944 len 1862 erate 0.0427 score 1782.49 - alt edge len 1204 erate 0.0434 score 1151.75 - absdiff 630.75 percdiff 42.9921 saved region 0:12385 - 2 best edges are potentially confused Annotating repeats in reads for tig 9597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9599/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9622/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9626/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2328:13 - contained in read 338781 0- 4193 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9632/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9638/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 7043:11707 - contained in read 467252 3642- 11743 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9647/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6412:7109 - contained in read 106016 5020- 17718 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9648/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9652/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5475:6997 - closest read 340776 ( +381) 5094:10574 ( +3577) (contained) saved region 5475:6997 - closest read 341888 ( +161) 5314:11799 ( +4802) (contained) saved region 5475:6997 - closest read 341890 ( +134) 5341:11792 ( +4795) (contained) saved region 5475:6997 - closest read 183152 ( +18) 5457:7025 ( +28) (contained) saved region 5475:6997 - closest 5' read 341888 ( +161) 5314:11799 ( +4802) saved region 5475:6997 - closest 3' read 340776 ( +381) 5094:10574 ( +3577) search for confused edges: discard region 5475:6997 - no confusion in best edges Annotating repeats in reads for tig 9655/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 7312:12607 - contained in read 298158 6081- 12607 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9668/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9681/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10377:9359 - contained in read 345141 3790- 10377 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9684/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2552:3087 - contained in read 470500 0- 5700 discard region 4836:7522 - contained in read 179653 2277- 8986 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9687/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9688/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 10029:10689 - contained in read 428904 4296- 11325 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9706/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9721/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9730/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9734/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9738/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9741/90584. Annotated with 73 overlaps. Scan reads to discard spanned repeats. discard region 7839:12830 - contained in read 443180 3947- 12830 thickest edges to the repeat regions: saved region 3783:4610 - closest 5' read 352834 ( +3783) 0:4601 ( -9) saved region 3783:4610 - closest 3' read 443178 ( -159) 3942:12790 ( +8180) search for confused edges: discard region 3783:4610 - no confusion in best edges Annotating repeats in reads for tig 9745/90584. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 92:1194 - contained in read 353300 0- 7105 discard region 1311:7274 - contained in read 353298 367- 7274 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9773/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9784/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9790/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 0:1069 - contained in read 213917 0- 4649 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9793/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9797/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9799/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9806/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2317:3275 - contained in read 44985 766- 7494 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9808/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 13127:11883 - contained in read 171658 2200- 15801 discard region 13321:13869 - contained in read 171658 2200- 15801 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9811/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9822/90584. Annotated with 67 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4314:7555 - closest read 225660 ( +53) 4261:7555 ( +0) (contained) saved region 4314:7555 - closest 5' read 225660 ( +53) 4261:7555 ( +0) saved region 4314:7555 - closest 3' read 225660 ( +53) 4261:7555 ( +0) search for confused edges: discard region 4314:7555 - no confusion in best edges Annotating repeats in reads for tig 9824/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1680:705 - contained in read 362036 0- 8440 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9830/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9846/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9851/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 2417:1898 - contained in read 426162 0- 3541 discard region 3778:7021 - contained in read 349131 1898- 7578 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9855/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2183:3952 - contained in read 365797 0- 4697 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9858/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 0:4817 - contained in read 366099 0- 5738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9864/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4774:4056 - contained in read 366965 0- 4908 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9865/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 7169:8065 - contained in read 441853 2736- 9819 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9866/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9874/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9887/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4866:6938 - closest read 277801 ( +89) 4777:8998 ( +2060) (contained) saved region 4866:6938 - closest read 369890 ( +15) 4851:11899 ( +4961) (contained) saved region 4866:6938 - closest 5' read 369890 ( +15) 4851:11899 ( +4961) saved region 4866:6938 - closest 3' read 277801 ( +89) 4777:8998 ( +2060) search for confused edges: discard region 4866:6938 - no confusion in best edges Annotating repeats in reads for tig 9889/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9897/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9905/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 0:4481 - contained in read 371362 0- 8691 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9908/90584. Annotated with 113 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 175:7280 - closest 5' read 455291 ( +175) 0:7261 ( -19) saved region 175:7280 - closest 3' read 490814 ( -5239) 5414:10947 ( +3667) search for confused edges: tig 9908 read 490814 pos 5414-10947 IS confused by 3' edge to read 14067 - best edge read 455291 len 1847 erate 0.0403 score 1772.57 - alt edge len 1794 erate 0.0390 score 1724.03 - absdiff 48.53 percdiff 2.7759 tig 9908 read 490814 pos 5414-10947 IS confused by 3' edge to read 24338 - best edge read 455291 len 1847 erate 0.0403 score 1772.57 - alt edge len 1108 erate 0.0379 score 1066.01 - absdiff 706.56 percdiff 49.7827 tig 9908 read 490814 pos 5414-10947 IS confused by 3' edge to read 340094 - best edge read 455291 len 1847 erate 0.0403 score 1772.57 - alt edge len 1771 erate 0.0315 score 1715.21 - absdiff 57.35 percdiff 3.2888 tig 9908 read 490814 pos 5414-10947 IS confused by 3' edge to read 340095 - best edge read 455291 len 1847 erate 0.0403 score 1772.57 - alt edge len 1725 erate 0.0299 score 1673.42 - absdiff 99.14 percdiff 5.7541 tig 9908 read 490814 pos 5414-10947 IS confused by 3' edge to read 340097 - best edge read 455291 len 1847 erate 0.0403 score 1772.57 - alt edge len 1730 erate 0.0286 score 1680.52 - absdiff 92.04 percdiff 5.3311 tig 9908 read 490814 pos 5414-10947 IS confused by 3' edge to read 472139 - best edge read 455291 len 1847 erate 0.0403 score 1772.57 - alt edge len 1597 erate 0.0372 score 1537.59 - absdiff 234.97 percdiff 14.1972 saved region 175:7280 - 6 best edges are potentially confused break tig 9908 into up to 2 pieces: 0 7780 repeat (length 7780) 7780 14428 unique (length 6648) Creating Unitig 91290 Creating Unitig 91291 For tig 9908 repeat region 0 7780 - 11/ 0 reads repeat/unique - unitig 91290 created. For tig 9908 unique region 7780 14428 - 0/ 7 reads repeat/unique - unitig 91291 created. Annotating repeats in reads for tig 9910/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 0:723 - contained in read 371875 0- 6411 discard region 1394:2962 - contained in read 371875 0- 6411 discard region 5316:6441 - contained in read 381712 1391- 6457 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9915/90584. Annotated with 63 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5049 - closest read 398472 ( +0) 0:5529 ( +480) (contained) saved region 0:5049 - closest 5' read 398472 ( +0) 0:5529 ( +480) saved region 0:5049 - closest 3' read 398472 ( +0) 0:5529 ( +480) search for confused edges: discard region 0:5049 - no confusion in best edges Annotating repeats in reads for tig 9917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9919/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9922/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9927/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9936/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9942/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6010:7950 - closest 5' read 227055 ( +10) 6000:7893 ( -57) saved region 6010:7950 - closest 3' read 35463 ( -398) 6408:9509 ( +1559) search for confused edges: tig 9942 read 35463 pos 6408-9509 IS confused by 3' edge to read 478272 - best edge read 227055 len 1482 erate 0.0250 score 1444.95 - alt edge len 1351 erate 0.0348 score 1303.99 - absdiff 140.96 percdiff 10.2560 saved region 6010:7950 - 1 best edges are potentially confused break tig 9942 into up to 3 pieces: 0 5510 unique (length 5510) 5510 8450 repeat (length 2940) 8450 9509 unique (length 1059) Creating Unitig 91292 Creating Unitig 91293 Creating Unitig 91294 For tig 9942 unique region 0 5510 - 0/ 5 reads repeat/unique - unitig 91292 created. For tig 9942 repeat region 5510 8450 - 1/ 0 reads repeat/unique - unitig 91293 created. For tig 9942 unique region 8450 9509 - 0/ 1 reads repeat/unique - unitig 91294 created. Annotating repeats in reads for tig 9945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9947/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 4731:7941 - contained in read 418547 2299- 7941 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9954/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6488:7231 - closest read 50695 ( +2896) 3592:7390 ( +159) (contained) saved region 6488:7231 - closest read 275220 ( +2814) 3674:7386 ( +155) (contained) saved region 6488:7231 - closest read 31951 ( +2437) 4051:7431 ( +200) (contained) saved region 6488:7231 - closest read 75399 ( +2289) 4199:7355 ( +124) (contained) saved region 6488:7231 - closest read 271117 ( +1901) 4587:7377 ( +146) (contained) saved region 6488:7231 - closest read 208280 ( +1814) 4674:7336 ( +105) (contained) saved region 6488:7231 - closest read 231022 ( +1789) 4699:7390 ( +159) (contained) saved region 6488:7231 - closest read 31952 ( +1716) 4772:7353 ( +122) (contained) saved region 6488:7231 - closest read 463044 ( +1443) 5045:7395 ( +164) (contained) saved region 6488:7231 - closest read 183762 ( +1372) 5116:7382 ( +151) (contained) saved region 6488:7231 - closest read 200144 ( +1301) 5187:7331 ( +100) (contained) saved region 6488:7231 - closest read 67959 ( +1296) 5192:7364 ( +133) (contained) saved region 6488:7231 - closest read 98168 ( +1276) 5212:7361 ( +130) (contained) saved region 6488:7231 - closest read 200145 ( +1239) 5249:7327 ( +96) (contained) saved region 6488:7231 - closest read 263990 ( +974) 5514:7372 ( +141) (contained) saved region 6488:7231 - closest read 340342 ( +949) 5539:7372 ( +141) (contained) saved region 6488:7231 - closest read 11797 ( +906) 5582:7369 ( +138) (contained) saved region 6488:7231 - closest read 382449 ( +853) 5635:7351 ( +120) (contained) saved region 6488:7231 - closest read 124719 ( +821) 5667:7293 ( +62) (contained) saved region 6488:7231 - closest read 263988 ( +747) 5741:7367 ( +136) (contained) saved region 6488:7231 - closest read 404704 ( +661) 5827:7305 ( +74) (contained) saved region 6488:7231 - closest read 158522 ( +628) 5860:7366 ( +135) (contained) saved region 6488:7231 - closest read 263991 ( +609) 5879:7349 ( +118) (contained) saved region 6488:7231 - closest read 207963 ( +506) 5982:7360 ( +129) (contained) saved region 6488:7231 - closest read 45151 ( +465) 6023:7407 ( +176) (contained) saved region 6488:7231 - closest read 334486 ( +409) 6079:7417 ( +186) (contained) saved region 6488:7231 - closest read 376812 ( +385) 6103:7360 ( +129) (contained) saved region 6488:7231 - closest read 50693 ( +379) 6109:7357 ( +126) (contained) saved region 6488:7231 - closest read 147128 ( +216) 6272:7373 ( +142) (contained) saved region 6488:7231 - closest 5' read 31951 ( +2437) 4051:7431 ( +200) saved region 6488:7231 - closest 3' read 50695 ( +2896) 3592:7390 ( +159) search for confused edges: discard region 6488:7231 - no confusion in best edges Annotating repeats in reads for tig 9962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9963/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9965/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9966/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9973/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4:5556 - contained in read 379145 0- 8560 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9982/90584. Annotated with 67 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3290:13618 - closest 5' read 352953 ( +2891) 399:8364 ( -5254) saved region 3290:13618 - closest 3' read 41616 ( -1050) 4340:13909 ( +291) search for confused edges: tig 9982 read 394913 pos 9648-17949 IS confused by 5' edge to read 378794 - best edge read 439191 len 3731 erate 0.0260 score 3633.99 - alt edge len 2910 erate 0.0313 score 2818.92 - absdiff 815.08 percdiff 25.2623 saved region 3290:13618 - 1 best edges are potentially confused break tig 9982 into up to 3 pieces: 0 2790 unique (length 2790) 2790 14118 repeat (length 11328) 14118 19765 unique (length 5647) Creating Unitig 91295 Creating Unitig 91296 Creating Unitig 91297 For tig 9982 unique region 0 2790 - 0/ 2 reads repeat/unique - unitig 91295 created. For tig 9982 repeat region 2790 14118 - 29/ 0 reads repeat/unique - unitig 91296 created. For tig 9982 unique region 14118 19765 - 0/ 5 reads repeat/unique - unitig 91297 created. Annotating repeats in reads for tig 9983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9984/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 9997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10000/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 4594:9016 - contained in read 290585 12- 9016 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10008/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10009/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10014/90584. Annotated with 827 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5798:9665 - closest 5' read 51512 ( +5755) 43:8984 ( -681) saved region 5798:9665 - closest 3' read 383239 ( -1) 5799:11540 ( +1875) search for confused edges: tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 769 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3119 erate 0.0307 score 3023.25 - absdiff 51.44 percdiff 1.6871 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 1839 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 2386 erate 0.0377 score 2296.05 - absdiff 778.64 percdiff 28.9956 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 1841 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 2385 erate 0.0308 score 2311.54 - absdiff 763.14 percdiff 28.3368 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 1842 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 2415 erate 0.0346 score 2331.44 - absdiff 743.24 percdiff 27.4964 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 29647 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 2188 erate 0.0275 score 2127.83 - absdiff 946.86 percdiff 36.3999 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 71843 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3114 erate 0.0284 score 3025.56 - absdiff 49.12 percdiff 1.6105 tig 10014 read 51512 pos 43-8984 NOT confused by 5' edge to read 103082 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 669 erate 0.0314 score 647.99 - absdiff 2426.69 percdiff 130.3734 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 124601 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 1881 erate 0.0337 score 1817.61 - absdiff 1257.08 percdiff 51.3900 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 152529 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3108 erate 0.0423 score 2976.53 - absdiff 98.15 percdiff 3.2441 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 210830 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3115 erate 0.0313 score 3017.50 - absdiff 57.19 percdiff 1.8773 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 210831 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3115 erate 0.0370 score 2999.74 - absdiff 74.94 percdiff 2.4674 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 221203 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3115 erate 0.0283 score 3026.85 - absdiff 47.84 percdiff 1.5681 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 221205 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3122 erate 0.0279 score 3034.90 - absdiff 39.79 percdiff 1.3025 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 241633 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3128 erate 0.0314 score 3029.78 - absdiff 44.90 percdiff 1.4712 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 281973 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3116 erate 0.0319 score 3016.60 - absdiff 58.09 percdiff 1.9072 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 314476 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3113 erate 0.0403 score 2987.55 - absdiff 87.14 percdiff 2.8748 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 331691 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 1849 erate 0.0260 score 1800.93 - absdiff 1273.76 percdiff 52.2502 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 336087 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 1326 erate 0.0302 score 1285.95 - absdiff 1788.73 percdiff 82.0398 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 360225 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3115 erate 0.0303 score 3020.62 - absdiff 54.07 percdiff 1.7742 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 362933 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 2200 erate 0.0219 score 2151.82 - absdiff 922.87 percdiff 35.3148 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 365856 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 1146 erate 0.0367 score 1103.94 - absdiff 1970.74 percdiff 94.3249 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 396204 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 2690 erate 0.0310 score 2606.61 - absdiff 468.08 percdiff 16.4778 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 414302 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 2230 erate 0.0335 score 2155.30 - absdiff 919.39 percdiff 35.1585 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 414307 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 2232 erate 0.0306 score 2163.70 - absdiff 910.98 percdiff 34.7811 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 425448 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3116 erate 0.0350 score 3006.94 - absdiff 67.75 percdiff 2.2279 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 442798 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 2720 erate 0.0288 score 2641.66 - absdiff 433.02 percdiff 15.1503 tig 10014 read 51512 pos 43-8984 IS confused by 5' edge to read 529937 - best edge read 383239 len 3176 erate 0.0319 score 3074.69 - alt edge len 3112 erate 0.0267 score 3028.91 - absdiff 45.78 percdiff 1.5000 saved region 5798:9665 - 26 best edges are potentially confused break tig 10014 into up to 3 pieces: 0 5298 unique (length 5298) 5298 10165 repeat (length 4867) 10165 11589 unique (length 1424) Creating Unitig 91298 Creating Unitig 91299 Creating Unitig 91300 For tig 10014 unique region 0 5298 - 0/ 3 reads repeat/unique - unitig 91298 created. For tig 10014 repeat region 5298 10165 - 43/ 0 reads repeat/unique - unitig 91300 created. For tig 10014 unique region 10165 11589 - 0/ 2 reads repeat/unique - unitig 91299 created. Annotating repeats in reads for tig 10018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10037/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10044/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10045/90584. Annotated with 512 overlaps. Scan reads to discard spanned repeats. discard region 10161:14951 - contained in read 362933 7600- 14951 thickest edges to the repeat regions: saved region 6247:9171 - closest 5' read 396275 ( +6236) 11:8828 ( -343) saved region 6247:9171 - closest 3' read 362933 ( -1353) 7600:14951 ( +5780) search for confused edges: discard region 6247:9171 - no confusion in best edges Annotating repeats in reads for tig 10046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10053/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10064/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2346:1 - contained in read 389130 0- 7602 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10065/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10088/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10092/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10093/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 3149:6240 - contained in read 240386 576- 6240 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10096/90584. Annotated with 115 overlaps. Scan reads to discard spanned repeats. discard region 12463:13782 - contained in read 359956 7956- 13864 thickest edges to the repeat regions: saved region 7208:11289 - closest 5' read 509006 ( +2980) 4228:8634 ( -2655) saved region 7208:11289 - closest 3' read 359956 ( -748) 7956:13864 ( +2575) search for confused edges: discard region 7208:11289 - no confusion in best edges Annotating repeats in reads for tig 10100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10103/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5821:3124 - contained in read 242169 0- 7608 discard region 7585:6463 - contained in read 242169 0- 7608 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10113/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10115/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10121/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10130/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10135/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 0:2586 - contained in read 260237 0- 3670 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10144/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10150/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10161/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1768:5831 - closest read 476512 ( +476) 1292:5831 ( +0) (contained) saved region 1768:5831 - closest 5' read 476512 ( +476) 1292:5831 ( +0) saved region 1768:5831 - closest 3' read 476512 ( +476) 1292:5831 ( +0) search for confused edges: discard region 1768:5831 - no confusion in best edges Annotating repeats in reads for tig 10164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10172/90584. Annotated with 36 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1325:5567 - closest 5' read 402548 ( +1325) 0:5562 ( -5) saved region 1325:5567 - closest 3' read 199138 ( -12) 1337:5567 ( +0) search for confused edges: tig 10172 read 466417 pos 1324-5538 IS confused by 3' edge to read 90996 - best edge read 199138 len 4201 erate 0.0181 score 4124.96 - alt edge len 2240 erate 0.0147 score 2207.07 - absdiff 1917.89 percdiff 60.5774 tig 10172 read 466417 pos 1324-5538 NOT confused by 3' edge to read 322546 - best edge read 199138 len 4201 erate 0.0181 score 4124.96 - alt edge len 1708 erate 0.0282 score 1659.83 - absdiff 2465.13 percdiff 85.2278 tig 10172 read 466417 pos 1324-5538 IS confused by 3' edge to read 390722 - best edge read 199138 len 4201 erate 0.0181 score 4124.96 - alt edge len 3451 erate 0.0330 score 3337.12 - absdiff 787.84 percdiff 21.1160 tig 10172 read 466417 pos 1324-5538 IS confused by 3' edge to read 390729 - best edge read 199138 len 4201 erate 0.0181 score 4124.96 - alt edge len 3438 erate 0.0332 score 3323.86 - absdiff 801.10 percdiff 21.5095 tig 10172 read 466417 pos 1324-5538 NOT confused by 3' edge to read 443043 - best edge read 199138 len 4201 erate 0.0181 score 4124.96 - alt edge len 1456 erate 0.0391 score 1399.07 - absdiff 2725.89 percdiff 98.6921 saved region 1325:5567 - 3 best edges are potentially confused break tig 10172 into up to 2 pieces: 0 825 unique (length 825) 825 5567 repeat (length 4742) Creating Unitig 91301 Creating Unitig 91302 For tig 10172 unique region 0 825 - 0/ 1 reads repeat/unique - unitig 91301 created. For tig 10172 repeat region 825 5567 - 57/ 0 reads repeat/unique - unitig 91302 created. Annotating repeats in reads for tig 10174/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2755:5859 - contained in read 402645 0- 5859 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10178/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2064:3242 - contained in read 402961 0- 10160 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10186/90584. Annotated with 39 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 564:6875 - closest 5' read 403999 ( +564) 0:5326 ( -1549) saved region 564:6875 - closest 3' read 417180 ( -1519) 2083:6875 ( +0) search for confused edges: tig 10186 read 154710 pos 1107-6645 NOT confused by 3' edge to read 287237 - best edge read 417180 len 4562 erate 0.0247 score 4449.32 - alt edge len 1990 erate 0.0372 score 1915.97 - absdiff 2533.35 percdiff 79.5988 discard region 564:6875 - no confusion in best edges Annotating repeats in reads for tig 10187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10193/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4564:5730 - contained in read 371775 0- 10159 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10212/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10217/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10220/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 3083:6329 - contained in read 281196 8- 6334 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10226/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10246/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 0:5519 - contained in read 456644 0- 6324 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10248/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10256/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10257/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10276/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10281/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10282/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:2300 - closest 5' read 415193 ( +0) 0:1482 ( -818) saved region 0:2300 - closest 3' read 32129 ( -582) 582:7789 ( +5489) search for confused edges: discard region 0:2300 - no confusion in best edges Annotating repeats in reads for tig 10292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10305/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 1482:5598 - contained in read 417328 10- 5598 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10309/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3088:6612 - contained in read 418326 0- 8229 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10310/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 22:581 - contained in read 418361 0- 5755 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10343/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4:2881 - contained in read 234601 0- 3508 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10350/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10356/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 2339:7729 - contained in read 422698 0- 7729 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10358/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 4991:9087 - contained in read 266610 3319- 9087 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10397/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6698:10714 - closest read 524261 ( +80) 6618:10714 ( +0) (contained) saved region 6698:10714 - closest 5' read 524261 ( +80) 6618:10714 ( +0) saved region 6698:10714 - closest 3' read 524261 ( +80) 6618:10714 ( +0) search for confused edges: discard region 6698:10714 - no confusion in best edges Annotating repeats in reads for tig 10405/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10410/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3776:6296 - contained in read 430034 0- 6808 discard region 6390:6944 - contained in read 264576 1621- 8015 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10413/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10422/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10452/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1145:554 - contained in read 434575 0- 7694 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10456/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4716:9850 - closest 5' read 435143 ( +4707) 9:9435 ( -415) saved region 4716:9850 - closest 3' read 381491 ( -9) 4725:10945 ( +1095) search for confused edges: tig 10456 read 381491 pos 4725-10945 IS confused by 5' edge to read 12021 - best edge read 435143 len 4757 erate 0.0370 score 4580.99 - alt edge len 4289 erate 0.0100 score 4246.11 - absdiff 334.88 percdiff 7.5876 tig 10456 read 381491 pos 4725-10945 NOT confused by 5' edge to read 129340 - best edge read 435143 len 4757 erate 0.0370 score 4580.99 - alt edge len 2278 erate 0.0222 score 2227.43 - absdiff 2353.56 percdiff 69.1368 tig 10456 read 381491 pos 4725-10945 IS confused by 5' edge to read 260205 - best edge read 435143 len 4757 erate 0.0370 score 4580.99 - alt edge len 3507 erate 0.0163 score 3449.84 - absdiff 1131.16 percdiff 28.1703 tig 10456 read 381491 pos 4725-10945 IS confused by 5' edge to read 314575 - best edge read 435143 len 4757 erate 0.0370 score 4580.99 - alt edge len 4289 erate 0.0108 score 4242.68 - absdiff 338.31 percdiff 7.6683 saved region 4716:9850 - 3 best edges are potentially confused break tig 10456 into up to 3 pieces: 0 4216 unique (length 4216) 4216 10350 repeat (length 6134) 10350 13051 unique (length 2701) Creating Unitig 91303 Creating Unitig 91304 Creating Unitig 91305 For tig 10456 unique region 0 4216 - 0/ 5 reads repeat/unique - unitig 91303 created. For tig 10456 repeat region 4216 10350 - 8/ 0 reads repeat/unique - unitig 91305 created. For tig 10456 unique region 10350 13051 - 0/ 2 reads repeat/unique - unitig 91304 created. Annotating repeats in reads for tig 10461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10472/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6613:7249 - closest read 195527 ( +6131) 482:7254 ( +5) (contained) saved region 6613:7249 - closest read 436073 ( +0) 6613:16106 ( +8857) (contained) saved region 6613:7249 - closest read 436076 ( +0) 6613:16105 ( +8856) (contained) saved region 6613:7249 - closest 5' read 436073 ( +0) 6613:16106 ( +8857) saved region 6613:7249 - closest 3' read 195527 ( +6131) 482:7254 ( +5) search for confused edges: discard region 6613:7249 - no confusion in best edges Annotating repeats in reads for tig 10476/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10478/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10484/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10487/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 2537:6573 - contained in read 438014 0- 6573 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10489/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10490/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 18:2603 - contained in read 438255 0- 5924 discard region 3540:4666 - contained in read 438255 0- 5924 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10498/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 32:4801 - closest read 135892 ( +32) 0:4835 ( +34) (contained) saved region 32:4801 - closest 5' read 135892 ( +32) 0:4835 ( +34) saved region 32:4801 - closest 3' read 135892 ( +32) 0:4835 ( +34) search for confused edges: discard region 32:4801 - no confusion in best edges Annotating repeats in reads for tig 10501/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10521/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4527:7311 - closest read 345190 ( +4425) 102:7317 ( +6) (contained) saved region 4527:7311 - closest 5' read 345190 ( +4425) 102:7317 ( +6) saved region 4527:7311 - closest 3' read 345190 ( +4425) 102:7317 ( +6) search for confused edges: discard region 4527:7311 - no confusion in best edges Annotating repeats in reads for tig 10522/90584. Annotated with 90 overlaps. Scan reads to discard spanned repeats. discard region 4114:14769 - contained in read 338471 1530- 14772 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10536/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10541/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10550/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 18:3508 - closest read 444235 ( +18) 0:3538 ( +30) (contained) saved region 18:3508 - closest read 271509 ( +2) 16:3604 ( +96) (contained) saved region 18:3508 - closest 5' read 271509 ( +2) 16:3604 ( +96) saved region 18:3508 - closest 3' read 444235 ( +18) 0:3538 ( +30) search for confused edges: discard region 18:3508 - no confusion in best edges Annotating repeats in reads for tig 10554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10578/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10584/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10586/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 3987:5966 - contained in read 448252 0- 6492 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10596/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 7:1623 - contained in read 430903 0- 7307 discard region 3472:7300 - contained in read 449046 2099- 7309 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10608/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10610/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 456:1777 - contained in read 451196 0- 5886 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10625/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10636/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1496:3831 - contained in read 454413 0- 6173 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10642/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10648/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5300:10611 - closest read 87558 ( +2085) 3215:10619 ( +8) (contained) saved region 5300:10611 - closest 5' read 87558 ( +2085) 3215:10619 ( +8) saved region 5300:10611 - closest 3' read 87558 ( +2085) 3215:10619 ( +8) search for confused edges: discard region 5300:10611 - no confusion in best edges Annotating repeats in reads for tig 10653/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 0:4660 - contained in read 98007 0- 7777 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10655/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10660/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6810:4377 - contained in read 268126 0- 6725 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10662/90584. Annotated with 325 overlaps. Scan reads to discard spanned repeats. discard region 2723:6154 - contained in read 457626 0- 7889 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10671/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 6368:8514 - contained in read 482080 2339- 8514 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10674/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10707/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10726/90584. Annotated with 88 overlaps. Scan reads to discard spanned repeats. discard region 3759:7130 - contained in read 466454 0- 7130 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10738/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3344:6365 - contained in read 467391 1072- 6365 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10770/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4369:3230 - contained in read 471541 0- 6956 discard region 6956:6428 - contained in read 471541 0- 6956 discard region 11346:11888 - contained in read 36435 6312- 11890 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10777/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 7:2218 - contained in read 472486 0- 6306 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10779/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10782/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10787/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10793/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10823/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7582:6212 - contained in read 478598 0- 7573 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10835/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1114:4717 - contained in read 479329 0- 5656 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10844/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10845/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10853/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2665:866 - contained in read 481766 0- 4617 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10860/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10874/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10877/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10894/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10899/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10915/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3681:4916 - contained in read 490351 0- 7570 discard region 6644:7584 - contained in read 490348 111- 7587 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10949/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10996/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 1727:6927 - contained in read 498715 0- 6927 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 10998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11001/90584. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 1713:1043 - contained in read 245143 0- 3918 discard region 16915:22695 - contained in read 498976 12210- 22713 thickest edges to the repeat regions: saved region 2406:3922 - closest 5' read 245143 ( +2406) 0:3918 ( -4) saved region 2406:3922 - closest 3' read 411297 ( -273) 2679:8136 ( +4214) saved region 3926:15741 - closest 5' read 37816 ( +652) 3274:14207 ( -1534) saved region 3926:15741 - closest 3' read 498976 ( -8284) 12210:22713 ( +6972) search for confused edges: tig 11001 read 489170 pos 7292-14979 NOT confused by 5' edge to read 245143 - best edge read 37816 len 6915 erate 0.0155 score 6807.82 - alt edge len 877 erate 0.0366 score 844.90 - absdiff 5962.92 percdiff 155.8378 discard region 2406:3922 - no confusion in best edges discard region 3926:15741 - no confusion in best edges Annotating repeats in reads for tig 11003/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11012/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 4982:5588 - contained in read 500577 0- 7479 discard region 6667:9187 - contained in read 508224 5524- 9225 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11022/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5309:9078 - contained in read 501317 4185- 9126 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11026/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:4073 - closest read 96601 ( +0) 0:4229 ( +156) (contained) saved region 0:4073 - closest 5' read 96601 ( +0) 0:4229 ( +156) saved region 0:4073 - closest 3' read 96601 ( +0) 0:4229 ( +156) search for confused edges: discard region 0:4073 - no confusion in best edges Annotating repeats in reads for tig 11027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11050/90584. Annotated with 54 overlaps. Scan reads to discard spanned repeats. discard region 0:3999 - contained in read 505649 0- 5767 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11065/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11073/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 0:3681 - contained in read 371996 0- 6893 discard region 5730:6881 - contained in read 509438 729- 9207 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11104/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3713:7893 - contained in read 50634 2566- 9201 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11105/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 3213:7561 - contained in read 70130 1202- 7561 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11122/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3301:4864 - contained in read 362785 0- 6482 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11127/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 0:1662 - contained in read 401906 0- 12810 discard region 8545:7901 - contained in read 401906 0- 12810 discard region 8902:11772 - contained in read 401906 0- 12810 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11135/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11161/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 19:1754 - contained in read 518065 0- 4108 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11179/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6411:7946 - contained in read 22144 2254- 7952 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11201/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11202/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3534:4399 - contained in read 523086 941- 4401 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11223/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1966:0 - contained in read 184539 0- 4731 discard region 3853:240 - contained in read 184539 0- 4731 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11256/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2515:5830 - closest 5' read 296822 ( +2515) 0:5586 ( -244) saved region 2515:5830 - closest 3' read 529366 ( -661) 3176:9935 ( +4105) search for confused edges: tig 11256 read 529366 pos 3176-9935 IS confused by 5' edge to read 326888 - best edge read 296822 len 2410 erate 0.0387 score 2316.73 - alt edge len 1197 erate 0.0377 score 1151.87 - absdiff 1164.86 percdiff 67.1659 tig 11256 read 529366 pos 3176-9935 IS confused by 5' edge to read 326889 - best edge read 296822 len 2410 erate 0.0387 score 2316.73 - alt edge len 1201 erate 0.0409 score 1151.88 - absdiff 1164.85 percdiff 67.1654 saved region 2515:5830 - 2 best edges are potentially confused break tig 11256 into up to 3 pieces: 0 2015 unique (length 2015) 2015 6330 repeat (length 4315) 6330 9935 unique (length 3605) Creating Unitig 91306 Creating Unitig 91307 For tig 11256 unique region 0 2015 - 0/ 6 reads repeat/unique - unitig 91306 created. For tig 11256 repeat region 2015 6330 - 0/ 0 repeat/unique reads - no new unitig created. For tig 11256 unique region 6330 9935 - 0/ 5 reads repeat/unique - unitig 91307 created. Annotating repeats in reads for tig 11278/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1310:5806 - contained in read 531727 0- 7373 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11281/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11283/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11287/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11288/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11289/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11294/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11296/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11297/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 2426:6436 - contained in read 378575 0- 7655 thickest edges to the repeat regions: saved region 7851:9095 - closest 5' read 378574 ( +7821) 30:9084 ( -11) saved region 7851:9095 - closest 3' read 1076 ( -396) 8247:16040 ( +6945) search for confused edges: tig 11297 read 1078 pos 8248-16372 IS confused by 5' edge to read 52767 - best edge read 378574 len 836 erate 0.0228 score 816.94 - alt edge len 838 erate 0.0311 score 811.94 - absdiff 5.00 percdiff 0.6140 tig 11297 read 1078 pos 8248-16372 IS confused by 5' edge to read 423362 - best edge read 378574 len 836 erate 0.0228 score 816.94 - alt edge len 830 erate 0.0230 score 810.91 - absdiff 6.03 percdiff 0.7408 saved region 7851:9095 - 2 best edges are potentially confused break tig 11297 into up to 3 pieces: 0 7351 unique (length 7351) 7351 9595 repeat (length 2244) 9595 16372 unique (length 6777) Creating Unitig 91308 Creating Unitig 91309 For tig 11297 unique region 0 7351 - 0/ 8 reads repeat/unique - unitig 91308 created. For tig 11297 repeat region 7351 9595 - 0/ 0 repeat/unique reads - no new unitig created. For tig 11297 unique region 9595 16372 - 0/ 5 reads repeat/unique - unitig 91309 created. Annotating repeats in reads for tig 11298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11299/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11301/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11305/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 1523:3383 - contained in read 1654 0- 5459 thickest edges to the repeat regions: saved region 3509:7414 - closest read 167643 ( +1708) 1801:7793 ( +379) (contained) saved region 3509:7414 - closest 5' read 167643 ( +1708) 1801:7793 ( +379) saved region 3509:7414 - closest 3' read 167643 ( +1708) 1801:7793 ( +379) search for confused edges: discard region 3509:7414 - no confusion in best edges Annotating repeats in reads for tig 11306/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11309/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11312/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11316/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4210:4781 - contained in read 496348 0- 5912 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11318/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11319/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11321/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1423:7090 - closest 5' read 463696 ( +1423) 0:6257 ( -833) saved region 1423:7090 - closest 3' read 2874 ( -48) 1471:8072 ( +982) search for confused edges: tig 11321 read 98287 pos 1426-7079 IS confused by 3' edge to read 379665 - best edge read 463696 len 4831 erate 0.0238 score 4716.02 - alt edge len 4420 erate 0.0179 score 4340.88 - absdiff 375.14 percdiff 8.2841 tig 11321 read 98287 pos 1426-7079 IS confused by 3' edge to read 478272 - best edge read 463696 len 4831 erate 0.0238 score 4716.02 - alt edge len 3930 erate 0.0246 score 3833.32 - absdiff 882.70 percdiff 20.6495 tig 11321 read 2874 pos 1471-8072 IS confused by 5' edge to read 379665 - best edge read 98287 len 5608 erate 0.0234 score 5476.77 - alt edge len 4373 erate 0.0215 score 4278.98 - absdiff 1197.79 percdiff 24.5556 tig 11321 read 2874 pos 1471-8072 IS confused by 5' edge to read 478272 - best edge read 98287 len 5608 erate 0.0234 score 5476.77 - alt edge len 3884 erate 0.0304 score 3765.93 - absdiff 1710.85 percdiff 37.0205 saved region 1423:7090 - 4 best edges are potentially confused break tig 11321 into up to 3 pieces: 0 923 unique (length 923) 923 7590 repeat (length 6667) 7590 8072 unique (length 482) Creating Unitig 91310 Creating Unitig 91311 Creating Unitig 91312 For tig 11321 unique region 0 923 - 0/ 2 reads repeat/unique - unitig 91310 created. For tig 11321 repeat region 923 7590 - 19/ 0 reads repeat/unique - unitig 91311 created. For tig 11321 unique region 7590 8072 - 0/ 3 reads repeat/unique - unitig 91312 created. Annotating repeats in reads for tig 11322/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4718:6018 - contained in read 2900 0- 7607 discard region 6330:7110 - contained in read 2902 2- 7884 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11323/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11325/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11327/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11330/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4584:6882 - closest read 14117 ( +2) 4582:6983 ( +101) (contained) saved region 4584:6882 - closest 5' read 14117 ( +2) 4582:6983 ( +101) saved region 4584:6882 - closest 3' read 14117 ( +2) 4582:6983 ( +101) search for confused edges: discard region 4584:6882 - no confusion in best edges Annotating repeats in reads for tig 11332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11333/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2372:1322 - contained in read 3278 0- 7445 discard region 3266:1565 - contained in read 3278 0- 7445 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11334/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1565:2822 - contained in read 395145 939- 3423 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11338/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11340/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11347/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11350/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11363/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2642:136 - contained in read 5847 0- 3694 discard region 3381:197 - contained in read 5847 0- 3694 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11364/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11366/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11367/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11368/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11369/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11370/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11376/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11378/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. discard region 0:3474 - contained in read 6749 0- 6218 discard region 4508:6085 - contained in read 402927 1241- 7475 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11379/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 2759:6867 - contained in read 6809 11- 6873 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11381/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11386/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11388/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11390/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11391/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11392/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11393/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11394/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5319:6914 - closest 5' read 351194 ( +5314) 5:6299 ( -615) saved region 5319:6914 - closest 3' read 8231 ( -444) 5763:11862 ( +4948) search for confused edges: discard region 5319:6914 - no confusion in best edges Annotating repeats in reads for tig 11395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11398/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11400/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11401/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4255:5243 - contained in read 21278 0- 6955 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11402/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11405/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11407/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11410/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11414/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 5354:6160 - contained in read 9455 1- 6163 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11415/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11417/90584. Annotated with 690 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 770:6498 - closest 5' read 9555 ( +153) 617:6405 ( -93) saved region 770:6498 - closest 3' read 443010 ( -2517) 3287:11422 ( +4924) search for confused edges: tig 11417 read 9555 pos 617-6405 IS confused by 5' edge to read 43611 - best edge read 443010 len 3118 erate 0.0293 score 3026.64 - alt edge len 2004 erate 0.0341 score 1935.66 - absdiff 1090.98 percdiff 43.9706 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 6176 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 2546 erate 0.0196 score 2496.10 - absdiff 565.49 percdiff 20.3498 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 6177 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 2491 erate 0.0213 score 2437.94 - absdiff 623.65 percdiff 22.6800 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 39725 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 2271 erate 0.0176 score 2231.03 - absdiff 830.56 percdiff 31.3855 tig 11417 read 443010 pos 3287-11422 NOT confused by 3' edge to read 43611 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 761 erate 0.0290 score 738.93 - absdiff 2322.66 percdiff 122.2284 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 51583 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 2261 erate 0.0172 score 2222.11 - absdiff 839.48 percdiff 31.7761 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 81370 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 1883 erate 0.0329 score 1821.05 - absdiff 1240.54 percdiff 50.8143 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 97422 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 3112 erate 0.0223 score 3042.60 - absdiff 18.99 percdiff 0.6220 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 100374 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 2781 erate 0.0266 score 2707.03 - absdiff 354.56 percdiff 12.2928 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 121025 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 1963 erate 0.0275 score 1909.02 - absdiff 1152.57 percdiff 46.3755 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 124233 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 1469 erate 0.0281 score 1427.72 - absdiff 1633.87 percdiff 72.7892 tig 11417 read 443010 pos 3287-11422 NOT confused by 3' edge to read 209259 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 673 erate 0.0238 score 656.98 - absdiff 2404.61 percdiff 129.3296 tig 11417 read 443010 pos 3287-11422 NOT confused by 3' edge to read 236899 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 720 erate 0.0209 score 704.95 - absdiff 2356.64 percdiff 125.1353 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 258664 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 1691 erate 0.0201 score 1657.01 - absdiff 1404.58 percdiff 59.5336 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 258669 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 1688 erate 0.0184 score 1656.94 - absdiff 1404.65 percdiff 59.5375 tig 11417 read 443010 pos 3287-11422 NOT confused by 3' edge to read 264038 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 783 erate 0.0230 score 764.99 - absdiff 2296.60 percdiff 120.0339 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 326611 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 1947 erate 0.0211 score 1905.92 - absdiff 1155.67 percdiff 46.5292 tig 11417 read 443010 pos 3287-11422 NOT confused by 3' edge to read 361754 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 767 erate 0.0144 score 755.96 - absdiff 2305.63 percdiff 120.7914 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 383582 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 2910 erate 0.0176 score 2858.78 - absdiff 202.80 percdiff 6.8510 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 383583 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 3109 erate 0.0093 score 3080.09 - absdiff 18.50 percdiff 0.6024 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 394729 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 3114 erate 0.0207 score 3049.54 - absdiff 12.05 percdiff 0.3943 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 394730 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 3106 erate 0.0283 score 3018.10 - absdiff 43.49 percdiff 1.4306 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 398107 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 2849 erate 0.0292 score 2765.81 - absdiff 295.78 percdiff 10.1513 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 402645 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 2588 erate 0.0171 score 2543.75 - absdiff 517.84 percdiff 18.4768 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 402648 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 2599 erate 0.0229 score 2539.48 - absdiff 522.10 percdiff 18.6430 tig 11417 read 443010 pos 3287-11422 NOT confused by 3' edge to read 418361 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 717 erate 0.0251 score 699.00 - absdiff 2362.58 percdiff 125.6496 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 423011 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 3118 erate 0.0157 score 3069.05 - absdiff 7.46 percdiff 0.2434 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 458079 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 2209 erate 0.0158 score 2174.10 - absdiff 887.49 percdiff 33.9016 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 458080 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 2088 erate 0.0148 score 2057.10 - absdiff 1004.49 percdiff 39.2480 tig 11417 read 443010 pos 3287-11422 IS confused by 3' edge to read 490545 - best edge read 9555 len 3154 erate 0.0293 score 3061.59 - alt edge len 1752 erate 0.0218 score 1713.81 - absdiff 1347.78 percdiff 56.4469 saved region 770:6498 - 24 best edges are potentially confused break tig 11417 into up to 3 pieces: 0 270 unique (length 270) 270 6998 repeat (length 6728) 6998 11422 unique (length 4424) Creating Unitig 91313 Creating Unitig 91314 Creating Unitig 91315 For tig 11417 unique region 0 270 - 0/ 2 reads repeat/unique - unitig 91313 created. For tig 11417 repeat region 270 6998 - 23/ 0 reads repeat/unique - unitig 91314 created. For tig 11417 unique region 6998 11422 - 0/ 1 reads repeat/unique - unitig 91315 created. Annotating repeats in reads for tig 11420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11421/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11426/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11428/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3968:6886 - contained in read 10408 1- 7000 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11431/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11433/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11435/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11436/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11439/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11440/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11441/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11443/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11445/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11446/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11447/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8696:9282 - closest read 220461 ( +0) 8696:14568 ( +5286) (contained) saved region 8696:9282 - closest 5' read 220461 ( +0) 8696:14568 ( +5286) saved region 8696:9282 - closest 3' read 220461 ( +0) 8696:14568 ( +5286) search for confused edges: discard region 8696:9282 - no confusion in best edges Annotating repeats in reads for tig 11449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11450/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11451/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3468:4279 - contained in read 11919 53- 4279 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11452/90584. Annotated with 576 overlaps. Scan reads to discard spanned repeats. discard region 1903:6331 - contained in read 11941 0- 6331 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11453/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 871:2299 - contained in read 11994 0- 5778 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11454/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 724:3991 - contained in read 12115 0- 7806 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11456/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6991:9140 - contained in read 12181 5689- 11560 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11457/90584. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 1953:4504 - contained in read 12187 0- 7397 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11460/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11469/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4643:6591 - contained in read 168353 2052- 6842 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11470/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 93:6602 - closest 5' read 76363 ( +93) 0:3794 ( -2808) saved region 93:6602 - closest 3' read 12696 ( -1898) 1991:6710 ( +108) search for confused edges: discard region 93:6602 - no confusion in best edges Annotating repeats in reads for tig 11471/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2620:4520 - closest read 190747 ( +459) 2161:8659 ( +4139) (contained) saved region 2620:4520 - closest read 190744 ( +455) 2165:8684 ( +4164) (contained) saved region 2620:4520 - closest 5' read 190744 ( +455) 2165:8684 ( +4164) saved region 2620:4520 - closest 3' read 190747 ( +459) 2161:8659 ( +4139) search for confused edges: discard region 2620:4520 - no confusion in best edges Annotating repeats in reads for tig 11472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11473/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11475/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2625:4973 - contained in read 13113 0- 6121 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11476/90584. Annotated with 91 overlaps. Scan reads to discard spanned repeats. discard region 1179:6118 - contained in read 13137 0- 6918 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11477/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11480/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11481/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11483/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11484/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11488/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11490/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 4221:6917 - contained in read 423956 0- 10155 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11491/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6056:3799 - contained in read 14067 0- 5591 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11492/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 9275:10393 - closest read 14222 ( +9275) 0:10776 ( +383) (contained) saved region 9275:10393 - closest read 14221 ( +9275) 0:10754 ( +361) (contained) saved region 9275:10393 - closest read 14220 ( +9057) 218:10516 ( +123) (contained) saved region 9275:10393 - closest 5' read 14222 ( +9275) 0:10776 ( +383) saved region 9275:10393 - closest 3' read 14222 ( +9275) 0:10776 ( +383) search for confused edges: discard region 9275:10393 - no confusion in best edges Annotating repeats in reads for tig 11493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11494/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11497/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11499/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11501/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11504/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11507/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11508/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11509/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11511/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11513/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3:3998 - contained in read 16111 0- 6479 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11514/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11515/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11516/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4876:8898 - closest read 206112 ( +4714) 162:8907 ( +9) (contained) saved region 4876:8898 - closest 5' read 206112 ( +4714) 162:8907 ( +9) saved region 4876:8898 - closest 3' read 206112 ( +4714) 162:8907 ( +9) search for confused edges: discard region 4876:8898 - no confusion in best edges Annotating repeats in reads for tig 11517/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3686:6690 - contained in read 16261 0- 8931 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11524/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:2295 - contained in read 449616 0- 6073 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11525/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11526/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11528/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4937:6249 - closest read 17036 ( +11) 4926:8213 ( +1964) (contained) saved region 4937:6249 - closest 5' read 17036 ( +11) 4926:8213 ( +1964) saved region 4937:6249 - closest 3' read 17036 ( +11) 4926:8213 ( +1964) search for confused edges: tig 11528 read 17037 pos 4944-7017 IS confused by 3' edge to read 263488 - best edge read 60592 len 813 erate 0.0347 score 784.79 - alt edge len 614 erate 0.0310 score 594.97 - absdiff 189.82 percdiff 27.5155 tig 11528 read 17037 pos 4944-7017 IS confused by 3' edge to read 263489 - best edge read 60592 len 813 erate 0.0347 score 784.79 - alt edge len 602 erate 0.0316 score 582.98 - absdiff 201.81 percdiff 29.5097 saved region 4937:6249 - 2 best edges are potentially confused break tig 11528 into up to 3 pieces: 0 4437 unique (length 4437) 4437 6749 repeat (length 2312) 6749 8213 unique (length 1464) Creating Unitig 91316 Creating Unitig 91317 Creating Unitig 91318 For tig 11528 unique region 0 4437 - 0/ 5 reads repeat/unique - unitig 91316 created. For tig 11528 repeat region 4437 6749 - 3/ 0 reads repeat/unique - unitig 91318 created. For tig 11528 unique region 6749 8213 - 0/ 2 reads repeat/unique - unitig 91317 created. Annotating repeats in reads for tig 11529/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 476:3793 - contained in read 17151 0- 10798 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11532/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3153:3931 - contained in read 17290 0- 5880 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11535/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11536/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11540/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11541/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11542/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11543/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11545/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11546/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1284:5802 - contained in read 184185 653- 9081 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11547/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6007:7104 - contained in read 18310 292- 7104 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11551/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11553/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4439:3252 - contained in read 257299 0- 7537 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11556/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11561/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4235:5033 - closest read 362395 ( +0) 4235:9863 ( +4830) (contained) saved region 4235:5033 - closest 5' read 362395 ( +0) 4235:9863 ( +4830) saved region 4235:5033 - closest 3' read 362395 ( +0) 4235:9863 ( +4830) search for confused edges: discard region 4235:5033 - no confusion in best edges Annotating repeats in reads for tig 11562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11572/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 384:5214 - closest read 109096 ( +384) 0:5314 ( +100) (contained) saved region 384:5214 - closest read 109095 ( +379) 5:5320 ( +106) (contained) saved region 384:5214 - closest 5' read 109095 ( +379) 5:5320 ( +106) saved region 384:5214 - closest 3' read 109096 ( +384) 0:5314 ( +100) search for confused edges: discard region 384:5214 - no confusion in best edges Annotating repeats in reads for tig 11573/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11576/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4746:5370 - contained in read 20846 0- 6722 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11579/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11586/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 131:3353 - closest read 21351 ( +25) 106:4827 ( +1474) (contained) saved region 131:3353 - closest 5' read 21351 ( +25) 106:4827 ( +1474) saved region 131:3353 - closest 3' read 21351 ( +25) 106:4827 ( +1474) search for confused edges: discard region 131:3353 - no confusion in best edges Annotating repeats in reads for tig 11588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11589/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11606/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11607/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11608/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11610/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11614/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4935:7250 - closest 5' read 22926 ( +4852) 83:5499 ( -1751) saved region 4935:7250 - closest 3' read 497026 ( -14) 4949:7970 ( +720) search for confused edges: discard region 4935:7250 - no confusion in best edges Annotating repeats in reads for tig 11615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11622/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11625/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11626/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11627/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8637:5524 - contained in read 23931 0- 6053 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11632/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11634/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5136:6091 - contained in read 24341 168- 6100 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11641/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3805:2040 - contained in read 24696 0- 6107 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11643/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11647/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11648/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5581:6097 - contained in read 24995 24- 6101 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11650/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11321:10754 - contained in read 369716 656- 11321 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11652/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11653/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11655/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 945:1684 - contained in read 204182 37- 2071 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11656/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 748:2814 - contained in read 25364 0- 6113 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11658/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11663/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2424:1069 - contained in read 26040 0- 2874 discard region 3472:1070 - contained in read 26040 0- 2874 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11673/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1345:5238 - closest 5' read 249697 ( +0) 1345:5230 ( -8) saved region 1345:5238 - closest 3' read 259957 ( -448) 1793:12907 ( +7669) search for confused edges: tig 11673 read 27548 pos 0-4149 IS confused by 3' edge to read 22208 - best edge read 259957 len 2356 erate 0.0307 score 2283.67 - alt edge len 668 erate 0.0195 score 654.97 - absdiff 1628.70 percdiff 110.8468 tig 11673 read 27548 pos 0-4149 IS confused by 3' edge to read 22209 - best edge read 259957 len 2356 erate 0.0307 score 2283.67 - alt edge len 598 erate 0.0151 score 588.97 - absdiff 1694.70 percdiff 117.9890 tig 11673 read 27548 pos 0-4149 IS confused by 3' edge to read 22211 - best edge read 259957 len 2356 erate 0.0307 score 2283.67 - alt edge len 604 erate 0.0182 score 593.01 - absdiff 1690.66 percdiff 117.5428 tig 11673 read 27548 pos 0-4149 IS confused by 3' edge to read 104428 - best edge read 259957 len 2356 erate 0.0307 score 2283.67 - alt edge len 650 erate 0.0154 score 639.99 - absdiff 1643.68 percdiff 112.4399 saved region 1345:5238 - 4 best edges are potentially confused break tig 11673 into up to 3 pieces: 0 845 unique (length 845) 845 5738 repeat (length 4893) 5738 12934 unique (length 7196) Creating Unitig 91319 Creating Unitig 91320 Creating Unitig 91321 For tig 11673 unique region 0 845 - 0/ 5 reads repeat/unique - unitig 91319 created. For tig 11673 repeat region 845 5738 - 2/ 0 reads repeat/unique - unitig 91320 created. For tig 11673 unique region 5738 12934 - 0/ 3 reads repeat/unique - unitig 91321 created. Annotating repeats in reads for tig 11674/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1815:6508 - closest 5' read 46568 ( +1815) 0:5256 ( -1252) saved region 1815:6508 - closest 3' read 222410 ( -2648) 4463:12830 ( +6322) search for confused edges: discard region 1815:6508 - no confusion in best edges Annotating repeats in reads for tig 11675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11679/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11681/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11682/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2386:4564 - contained in read 471067 0- 6353 discard region 6349:5680 - contained in read 471067 0- 6353 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11683/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6257:8079 - contained in read 28497 704- 8619 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11684/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11685/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11687/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11688/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11695/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11696/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 189:1588 - contained in read 37692 0- 2264 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11699/90584. Annotated with 665 overlaps. Scan reads to discard spanned repeats. discard region 1045:5890 - contained in read 29647 76- 5890 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11700/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11701/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11703/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 14:5480 - closest 5' read 368830 ( +6) 8:5451 ( -29) saved region 14:5480 - closest 3' read 344549 ( -140) 154:7529 ( +2049) search for confused edges: tig 11703 read 368830 pos 8-5451 IS confused by 3' edge to read 298819 - best edge read 344549 len 5297 erate 0.0110 score 5238.73 - alt edge len 4391 erate 0.0217 score 4295.72 - absdiff 943.02 percdiff 19.7813 tig 11703 read 368830 pos 8-5451 IS confused by 3' edge to read 298820 - best edge read 344549 len 5297 erate 0.0110 score 5238.73 - alt edge len 4390 erate 0.0226 score 4290.79 - absdiff 947.95 percdiff 19.8950 tig 11703 read 344549 pos 154-7529 NOT confused by 3' edge to read 354952 - best edge read 368830 len 5289 erate 0.0110 score 5230.82 - alt edge len 1832 erate 0.0202 score 1794.99 - absdiff 3435.83 percdiff 97.8058 saved region 14:5480 - 2 best edges are potentially confused break tig 11703 into up to 2 pieces: 0 5980 repeat (length 5980) 5980 7529 unique (length 1549) Creating Unitig 91322 Creating Unitig 91323 For tig 11703 repeat region 0 5980 - 37/ 0 reads repeat/unique - unitig 91322 created. For tig 11703 unique region 5980 7529 - 0/ 2 reads repeat/unique - unitig 91323 created. Annotating repeats in reads for tig 11704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11705/90584. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 5595:7846 - contained in read 353791 855- 7846 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11707/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11712/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11714/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11718/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 6550:7903 - contained in read 31075 0- 8972 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11721/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11726/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11730/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11732/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1588:3713 - contained in read 31945 0- 5239 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11733/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2164:3336 - contained in read 273846 0- 5762 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11734/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11737/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11738/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1749:7452 - contained in read 32243 0- 9801 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11739/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11743/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11749/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11751/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11755/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11756/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11491:9754 - contained in read 443981 0- 10875 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11759/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11760/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5063:5614 - contained in read 34749 3102- 6858 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11763/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11768/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11773/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3405:5519 - contained in read 35740 0- 6657 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11774/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11779/90584. Annotated with 64 overlaps. Scan reads to discard spanned repeats. discard region 890:6017 - contained in read 36156 24- 6017 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11784/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11789/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11791/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11793/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 913:6035 - contained in read 37033 0- 6685 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11796/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11797/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11799/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11801/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11804/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11808/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11817/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11819/90584. Annotated with 67 overlaps. Scan reads to discard spanned repeats. discard region 876:8023 - contained in read 450976 0- 13000 discard region 8263:13405 - contained in read 38382 6731- 16336 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11823/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11824/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11830/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11832/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9470:10020 - contained in read 272049 6165- 13530 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11835/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 1360:5690 - contained in read 37522 0- 7464 thickest edges to the repeat regions: saved region 6099:7467 - closest read 83659 ( +3390) 2709:7496 ( +29) (contained) saved region 6099:7467 - closest read 386073 ( +1634) 4465:7869 ( +402) (contained) saved region 6099:7467 - closest read 282263 ( +1053) 5046:7488 ( +21) (contained) saved region 6099:7467 - closest read 39383 ( +290) 5809:8117 ( +650) (contained) saved region 6099:7467 - closest 5' read 39383 ( +290) 5809:8117 ( +650) saved region 6099:7467 - closest 3' read 83659 ( +3390) 2709:7496 ( +29) search for confused edges: discard region 6099:7467 - no confusion in best edges Annotating repeats in reads for tig 11836/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11837/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11841/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11845/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11846/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11847/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2369:3388 - contained in read 40659 0- 6259 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11848/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11849/90584. Annotated with 77 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1899:9391 - closest 5' read 40714 ( +1294) 605:6663 ( -2728) saved region 1899:9391 - closest 3' read 268852 ( -1084) 2983:16614 ( +7223) search for confused edges: tig 11849 read 40715 pos 44-6644 IS confused by 5' edge to read 5852 - best edge read 268852 len 3661 erate 0.0175 score 3596.93 - alt edge len 3657 erate 0.0318 score 3540.71 - absdiff 56.23 percdiff 1.5755 tig 11849 read 40715 pos 44-6644 IS confused by 5' edge to read 421337 - best edge read 268852 len 3661 erate 0.0175 score 3596.93 - alt edge len 2766 erate 0.0199 score 2710.96 - absdiff 885.98 percdiff 28.0910 saved region 1899:9391 - 2 best edges are potentially confused break tig 11849 into up to 3 pieces: 0 1399 unique (length 1399) 1399 9891 repeat (length 8492) 9891 16614 unique (length 6723) Creating Unitig 91324 Creating Unitig 91325 Creating Unitig 91326 For tig 11849 unique region 0 1399 - 0/ 6 reads repeat/unique - unitig 91324 created. For tig 11849 repeat region 1399 9891 - 18/ 0 reads repeat/unique - unitig 91325 created. For tig 11849 unique region 9891 16614 - 0/ 1 reads repeat/unique - unitig 91326 created. Annotating repeats in reads for tig 11850/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11851/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11852/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10555:9564 - contained in read 152242 28- 10487 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11853/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 763:2215 - contained in read 40884 0- 3162 thickest edges to the repeat regions: saved region 2525:4348 - closest read 424762 ( +13) 2512:4382 ( +34) (contained) saved region 2525:4348 - closest 5' read 424762 ( +13) 2512:4382 ( +34) saved region 2525:4348 - closest 3' read 424762 ( +13) 2512:4382 ( +34) search for confused edges: discard region 2525:4348 - no confusion in best edges Annotating repeats in reads for tig 11854/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11856/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11859/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2758:3360 - contained in read 509390 0- 5298 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11860/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11861/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11865/90584. Annotated with 50 overlaps. Scan reads to discard spanned repeats. discard region 693:3537 - contained in read 409768 0- 7167 thickest edges to the repeat regions: saved region 4491:7195 - closest 5' read 457297 ( +831) 3660:7180 ( -15) saved region 4491:7195 - closest 3' read 165585 ( -5) 4496:12283 ( +5088) search for confused edges: tig 11865 read 409768 pos 0-7167 IS confused by 3' edge to read 307149 - best edge read 165585 len 2646 erate 0.0450 score 2526.93 - alt edge len 2588 erate 0.0379 score 2489.91 - absdiff 37.02 percdiff 1.4756 tig 11865 read 409768 pos 0-7167 IS confused by 3' edge to read 307150 - best edge read 165585 len 2646 erate 0.0450 score 2526.93 - alt edge len 2587 erate 0.0395 score 2484.81 - absdiff 42.12 percdiff 1.6807 saved region 4491:7195 - 2 best edges are potentially confused break tig 11865 into up to 3 pieces: 0 3991 unique (length 3991) 3991 7695 repeat (length 3704) 7695 12285 unique (length 4590) Creating Unitig 91327 Creating Unitig 91328 Creating Unitig 91329 For tig 11865 unique region 0 3991 - 0/ 24 reads repeat/unique - unitig 91327 created. For tig 11865 repeat region 3991 7695 - 20/ 0 reads repeat/unique - unitig 91328 created. For tig 11865 unique region 7695 12285 - 0/ 3 reads repeat/unique - unitig 91329 created. Annotating repeats in reads for tig 11866/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11867/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 1315:2811 - contained in read 41502 0- 6550 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11870/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11872/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11873/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11874/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11875/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11877/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11879/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 2865:2365 - contained in read 41969 0- 11750 discard region 7395:6501 - contained in read 41969 0- 11750 discard region 9136:11749 - contained in read 50157 8297- 13960 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11880/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11883/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11884/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11885/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11886/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11889/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11890/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11891/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11896/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 6708:11469 - contained in read 43478 2034- 11817 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11899/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11900/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11902/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11903/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11909/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1325:2709 - closest read 44463 ( +6) 1319:6937 ( +4228) (contained) saved region 1325:2709 - closest 5' read 44463 ( +6) 1319:6937 ( +4228) saved region 1325:2709 - closest 3' read 44463 ( +6) 1319:6937 ( +4228) search for confused edges: tig 11909 read 325269 pos 0-2691 IS confused by 5' edge to read 369442 - best edge read 44465 len 1338 erate 0.0315 score 1295.85 - alt edge len 1337 erate 0.0180 score 1312.93 - absdiff 17.08 percdiff 1.3095 tig 11909 read 325269 pos 0-2691 IS confused by 5' edge to read 369443 - best edge read 44465 len 1338 erate 0.0315 score 1295.85 - alt edge len 1327 erate 0.0407 score 1272.99 - absdiff 22.86 percdiff 1.7799 tig 11909 read 44465 pos 1357-6616 IS confused by 5' edge to read 213301 - best edge read 325269 len 1334 erate 0.0315 score 1291.98 - alt edge len 723 erate 0.0308 score 700.73 - absdiff 591.25 percdiff 59.3410 saved region 1325:2709 - 3 best edges are potentially confused break tig 11909 into up to 3 pieces: 0 825 unique (length 825) 825 3209 repeat (length 2384) 3209 6937 unique (length 3728) Creating Unitig 91330 Creating Unitig 91331 Creating Unitig 91332 For tig 11909 unique region 0 825 - 0/ 1 reads repeat/unique - unitig 91330 created. For tig 11909 repeat region 825 3209 - 2/ 0 reads repeat/unique - unitig 91331 created. For tig 11909 unique region 3209 6937 - 0/ 4 reads repeat/unique - unitig 91332 created. Annotating repeats in reads for tig 11910/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11912/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11915/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11916/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11919/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6260:7566 - contained in read 508332 744- 7566 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11920/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11921/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1000:0 - contained in read 45501 0- 4670 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11924/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11925/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11934/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11936/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11939/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3669:4294 - contained in read 46441 0- 6618 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11942/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11946/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4257:6030 - closest 5' read 46906 ( +4181) 76:6001 ( -29) saved region 4257:6030 - closest 3' read 389118 ( -24) 4281:6381 ( +351) search for confused edges: discard region 4257:6030 - no confusion in best edges Annotating repeats in reads for tig 11947/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11949/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 10093:11984 - contained in read 381795 3691- 13257 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11952/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11953/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11954/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11955/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11956/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3588:4933 - contained in read 47607 281- 6693 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11959/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11960/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11965/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11974/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11977/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11979/90584. Annotated with 77 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2479:5808 - closest 5' read 466483 ( +2457) 22:5750 ( -58) saved region 2479:5808 - closest 3' read 519766 ( -208) 2687:10655 ( +4847) search for confused edges: tig 11979 read 519766 pos 2687-10655 IS confused by 5' edge to read 201633 - best edge read 466485 len 3059 erate 0.0390 score 2939.70 - alt edge len 1315 erate 0.0361 score 1267.53 - absdiff 1672.17 percdiff 79.4904 tig 11979 read 519766 pos 2687-10655 IS confused by 5' edge to read 432809 - best edge read 466485 len 3059 erate 0.0390 score 2939.70 - alt edge len 1796 erate 0.0235 score 1753.79 - absdiff 1185.90 percdiff 50.5340 tig 11979 read 519766 pos 2687-10655 IS confused by 5' edge to read 432812 - best edge read 466485 len 3059 erate 0.0390 score 2939.70 - alt edge len 1717 erate 0.0275 score 1669.78 - absdiff 1269.92 percdiff 55.1002 saved region 2479:5808 - 3 best edges are potentially confused break tig 11979 into up to 3 pieces: 0 1979 unique (length 1979) 1979 6308 repeat (length 4329) 6308 10757 unique (length 4449) Creating Unitig 91333 Creating Unitig 91334 Creating Unitig 91335 For tig 11979 unique region 0 1979 - 0/ 4 reads repeat/unique - unitig 91333 created. For tig 11979 repeat region 1979 6308 - 31/ 0 reads repeat/unique - unitig 91334 created. For tig 11979 unique region 6308 10757 - 0/ 6 reads repeat/unique - unitig 91335 created. Annotating repeats in reads for tig 11980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11984/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11986/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11987/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11992/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6131:6665 - contained in read 49765 0- 7217 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 11999/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 8696:9823 - contained in read 366671 3235- 10401 thickest edges to the repeat regions: saved region 3036:5995 - closest 5' read 50290 ( +1858) 1178:5685 ( -310) saved region 3036:5995 - closest 3' read 366672 ( -187) 3223:10297 ( +4302) search for confused edges: tig 11999 read 50290 pos 1178-5685 IS confused by 5' edge to read 308965 - best edge read 366671 len 2450 erate 0.0303 score 2375.76 - alt edge len 2158 erate 0.0353 score 2081.82 - absdiff 293.94 percdiff 13.1884 saved region 3036:5995 - 1 best edges are potentially confused break tig 11999 into up to 3 pieces: 0 2536 unique (length 2536) 2536 6495 repeat (length 3959) 6495 10401 unique (length 3906) Creating Unitig 91336 Creating Unitig 91337 Creating Unitig 91338 For tig 11999 unique region 0 2536 - 0/ 4 reads repeat/unique - unitig 91336 created. For tig 11999 repeat region 2536 6495 - 2/ 0 reads repeat/unique - unitig 91337 created. For tig 11999 unique region 6495 10401 - 0/ 13 reads repeat/unique - unitig 91338 created. Annotating repeats in reads for tig 12000/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12001/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12002/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6659:7516 - contained in read 50685 2037- 7525 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12003/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12005/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12008/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12011/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3625:5645 - contained in read 51304 0- 5652 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12012/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6711:7560 - contained in read 51326 2414- 8034 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12015/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12020/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12024/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12026/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12028/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12031/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12032/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12034/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12035/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12037/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12041/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12042/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12044/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12047/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:1507 - closest read 53677 ( +0) 0:1698 ( +191) (contained) saved region 0:1507 - closest 5' read 53677 ( +0) 0:1698 ( +191) saved region 0:1507 - closest 3' read 53677 ( +0) 0:1698 ( +191) search for confused edges: discard region 0:1507 - no confusion in best edges Annotating repeats in reads for tig 12048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12052/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12054/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12055/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 8595:9723 - contained in read 256901 7629- 10852 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12057/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12058/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12059/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12062/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12063/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12071/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4034:4906 - closest 5' read 54803 ( +4010) 24:4818 ( -88) saved region 4034:4906 - closest 3' read 222558 ( -20) 4054:12964 ( +8058) search for confused edges: tig 12071 read 54803 pos 24-4818 IS confused by 5' edge to read 486813 - best edge read 222558 len 764 erate 0.0262 score 743.98 - alt edge len 511 erate 0.0256 score 497.92 - absdiff 246.06 percdiff 39.6271 saved region 4034:4906 - 1 best edges are potentially confused break tig 12071 into up to 3 pieces: 0 3534 unique (length 3534) 3534 5406 repeat (length 1872) 5406 12964 unique (length 7558) Creating Unitig 91339 Creating Unitig 91340 For tig 12071 unique region 0 3534 - 0/ 3 reads repeat/unique - unitig 91339 created. For tig 12071 repeat region 3534 5406 - 0/ 0 repeat/unique reads - no new unitig created. For tig 12071 unique region 5406 12964 - 0/ 2 reads repeat/unique - unitig 91340 created. Annotating repeats in reads for tig 12072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12073/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 2964:4902 - contained in read 427469 0- 5520 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12074/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5184:6212 - contained in read 499735 1341- 7701 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12079/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8664:6499 - contained in read 54143 0- 8779 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12080/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12081/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12083/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12087/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12088/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12090/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1724:7478 - contained in read 56266 0- 8115 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12092/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12095/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12100/90584. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 1089:2581 - contained in read 244113 0- 9768 discard region 2877:3602 - contained in read 244113 0- 9768 discard region 3701:9566 - contained in read 413997 728- 10485 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12103/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12105/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12107/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12108/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12110/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12112/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12113/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12115/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12120/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12121/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 9529:10576 - contained in read 58379 6734- 11373 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12129/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 15:4377 - contained in read 59234 0- 6259 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12130/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12133/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:3499 - contained in read 276679 0- 7721 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12134/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12137/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 333:1459 - contained in read 59629 0- 5977 discard region 3126:4760 - contained in read 59629 0- 5977 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12138/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12139/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12140/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12148/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12150/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12154/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4951:508 - contained in read 431263 0- 4276 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12155/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12158/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12162/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 662:1408 - contained in read 60644 0- 4760 discard region 4512:5574 - contained in read 130269 7- 5582 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12165/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 3572:5488 - contained in read 60855 47- 6103 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12167/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12174/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12179/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12184/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5954:4468 - contained in read 45888 1245- 5956 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12186/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12188/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12190/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12193/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12196/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12200/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12201/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12202/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12203/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12204/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 4240:5533 - contained in read 81760 0- 7884 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12205/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 7215:9491 - contained in read 311746 3004- 9513 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12215/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12216/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12223/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12226/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12227/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12228/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12230/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 6914:13546 - contained in read 64775 6288- 13546 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12231/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3919:6725 - closest read 159195 ( +1883) 2036:6914 ( +189) (contained) saved region 3919:6725 - closest read 159194 ( +1879) 2040:6960 ( +235) (contained) saved region 3919:6725 - closest 5' read 159194 ( +1879) 2040:6960 ( +235) saved region 3919:6725 - closest 3' read 159195 ( +1883) 2036:6914 ( +189) search for confused edges: discard region 3919:6725 - no confusion in best edges Annotating repeats in reads for tig 12233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12234/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12235/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12243/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12244/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12245/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12246/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1528:608 - contained in read 407558 236- 2890 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12248/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12251/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12253/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12257/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12258/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:2691 - contained in read 416287 0- 8101 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12260/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12262/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12263/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12264/90584. Annotated with 70 overlaps. Scan reads to discard spanned repeats. discard region 395:4248 - contained in read 66731 0- 10835 discard region 6011:10865 - contained in read 340136 5381- 14126 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12265/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 399:3789 - closest read 404426 ( +114) 285:6422 ( +2633) (contained) saved region 399:3789 - closest read 226773 ( +95) 304:9591 ( +5802) (contained) saved region 399:3789 - closest read 404425 ( +10) 389:9206 ( +5417) (contained) saved region 399:3789 - closest 5' read 226773 ( +95) 304:9591 ( +5802) saved region 399:3789 - closest 3' read 404426 ( +114) 285:6422 ( +2633) search for confused edges: discard region 399:3789 - no confusion in best edges Annotating repeats in reads for tig 12266/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12267/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12271/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2101:3338 - contained in read 67540 0- 6410 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12276/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12278/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12281/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12288/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:1598 - contained in read 68772 0- 5092 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12293/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 1256:6813 - contained in read 69012 47- 9221 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12296/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12299/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5758:4049 - contained in read 69182 0- 5342 discard region 5765:4446 - contained in read 69182 0- 5342 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12301/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12304/90584. Annotated with 223 overlaps. Scan reads to discard spanned repeats. discard region 0:839 - contained in read 493883 0- 6071 thickest edges to the repeat regions: saved region 3612:6114 - closest read 493886 ( +2731) 881:6119 ( +5) (contained) saved region 3612:6114 - closest 5' read 493886 ( +2731) 881:6119 ( +5) saved region 3612:6114 - closest 3' read 493886 ( +2731) 881:6119 ( +5) search for confused edges: tig 12304 read 69329 pos 4673-10312 IS confused by 3' edge to read 472139 - best edge read 493883 len 1398 erate 0.0282 score 1358.58 - alt edge len 582 erate 0.0417 score 557.73 - absdiff 800.85 percdiff 83.5822 tig 12304 read 69329 pos 4673-10312 IS confused by 3' edge to read 472142 - best edge read 493883 len 1398 erate 0.0282 score 1358.58 - alt edge len 633 erate 0.0319 score 612.81 - absdiff 745.77 percdiff 75.6595 saved region 3612:6114 - 2 best edges are potentially confused break tig 12304 into up to 3 pieces: 0 3112 unique (length 3112) 3112 6614 repeat (length 3502) 6614 10317 unique (length 3703) Creating Unitig 91341 Creating Unitig 91342 Creating Unitig 91343 For tig 12304 unique region 0 3112 - 0/ 4 reads repeat/unique - unitig 91341 created. For tig 12304 repeat region 3112 6614 - 29/ 0 reads repeat/unique - unitig 91342 created. For tig 12304 unique region 6614 10317 - 0/ 3 reads repeat/unique - unitig 91343 created. Annotating repeats in reads for tig 12305/90584. Annotated with 44 overlaps. Scan reads to discard spanned repeats. discard region 3099:4022 - contained in read 69406 0- 6209 thickest edges to the repeat regions: saved region 5608:7264 - closest 5' read 69409 ( +2509) 3099:6753 ( -511) saved region 5608:7264 - closest 3' read 520452 ( -314) 5922:10950 ( +3686) search for confused edges: tig 12305 read 520448 pos 5929-13434 IS confused by 5' edge to read 368911 - best edge read 69408 len 620 erate 0.0420 score 593.96 - alt edge len 647 erate 0.0449 score 617.95 - absdiff 23.99 percdiff 3.9590 saved region 5608:7264 - 1 best edges are potentially confused break tig 12305 into up to 3 pieces: 0 5108 unique (length 5108) 5108 7764 repeat (length 2656) 7764 13434 unique (length 5670) Creating Unitig 91344 Creating Unitig 91345 For tig 12305 unique region 0 5108 - 0/ 4 reads repeat/unique - unitig 91344 created. For tig 12305 repeat region 5108 7764 - 0/ 0 repeat/unique reads - no new unitig created. For tig 12305 unique region 7764 13434 - 0/ 6 reads repeat/unique - unitig 91345 created. Annotating repeats in reads for tig 12306/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5309:6932 - closest 5' read 69454 ( +86) 5223:6678 ( -254) saved region 5309:6932 - closest 3' read 113257 ( -52) 5361:7098 ( +166) search for confused edges: discard region 5309:6932 - no confusion in best edges Annotating repeats in reads for tig 12307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12311/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12312/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12316/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12321/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12322/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 277:1687 - contained in read 400254 0- 5189 discard region 5906:7942 - contained in read 175645 128- 11924 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12323/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12325/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12331/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12338/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12339/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 3316:4381 - contained in read 72174 0- 6831 discard region 4907:6284 - contained in read 72174 0- 6831 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12340/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12347/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12350/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12355/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5255:4006 - contained in read 198213 0- 5699 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12363/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12364/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12366/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12367/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 767:8046 - contained in read 74248 95- 8046 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12368/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12369/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12370/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12376/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12379/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12380/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1235:266 - contained in read 75045 0- 1399 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12381/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12385/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12386/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12387/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12388/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12391/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12392/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12393/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12394/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12398/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12399/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 77:848 - contained in read 76177 0- 5608 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12402/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:513 - contained in read 507780 0- 6001 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12405/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12407/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12408/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2845:1915 - contained in read 289272 0- 9284 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12410/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12411/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12413/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12414/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12415/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12416/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 3039:3778 - contained in read 77250 0- 8366 thickest edges to the repeat regions: saved region 4627:9416 - closest read 490521 ( +1650) 2977:9439 ( +23) (contained) saved region 4627:9416 - closest 5' read 490521 ( +1650) 2977:9439 ( +23) saved region 4627:9416 - closest 3' read 490521 ( +1650) 2977:9439 ( +23) search for confused edges: discard region 4627:9416 - no confusion in best edges Annotating repeats in reads for tig 12417/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4853:4169 - contained in read 139686 0- 7321 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12418/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6976:7932 - contained in read 141658 4951- 10490 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12419/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12436/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12439/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12440/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12441/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12445/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12446/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12451/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12456/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12457/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12460/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4245:3497 - contained in read 81787 0- 8877 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12465/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12470/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12472/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7139:8647 - contained in read 82624 2883- 10466 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12473/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12475/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6310:7142 - contained in read 492885 4215- 12443 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12478/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12480/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12481/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12483/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12484/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12485/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12490/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12491/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12497/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12499/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2181:3311 - contained in read 304160 672- 3324 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12500/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12501/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12504/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12507/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12508/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1068:5551 - contained in read 85920 208- 5569 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12509/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12514/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12515/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12516/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 1:1686 - contained in read 86282 0- 2897 discard region 3913:5678 - contained in read 86284 10- 6314 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12525/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12528/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12529/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6261:6975 - contained in read 465165 4888- 10485 discard region 8413:10472 - contained in read 465165 4888- 10485 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12530/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12532/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. discard region 1130:6550 - contained in read 76313 0- 7629 discard region 7059:8175 - contained in read 87006 2459- 8196 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12534/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3141:4649 - contained in read 87144 0- 6735 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12535/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12536/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12538/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12541/90584. Annotated with 50 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3858:8920 - closest read 427462 ( +3104) 754:9031 ( +111) (contained) saved region 3858:8920 - closest 5' read 427462 ( +3104) 754:9031 ( +111) saved region 3858:8920 - closest 3' read 427462 ( +3104) 754:9031 ( +111) search for confused edges: discard region 3858:8920 - no confusion in best edges Annotating repeats in reads for tig 12542/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12543/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12544/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6773:9840 - contained in read 407302 997- 11262 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12546/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12547/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12553/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4774:7275 - contained in read 88840 0- 8579 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12559/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 868:6250 - closest 5' read 390862 ( +868) 0:6246 ( -4) saved region 868:6250 - closest 3' read 390863 ( -3267) 4135:6262 ( +12) search for confused edges: discard region 868:6250 - no confusion in best edges Annotating repeats in reads for tig 12560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12566/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12576/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12578/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 7765:8498 - contained in read 90111 2892- 8621 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12584/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12585/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12586/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12587/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 2089:4376 - contained in read 488320 17- 8278 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12592/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 4956:6806 - contained in read 67393 3230- 7832 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12598/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8589:9769 - contained in read 91874 1917- 9769 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12599/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12600/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12614/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12616/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:1456 - contained in read 380017 0- 2935 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12622/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:727 - contained in read 93681 0- 5499 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12625/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12626/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2920:6711 - closest 5' read 469363 ( +5) 2915:6218 ( -493) saved region 2920:6711 - closest 3' read 22413 ( -7) 2927:6993 ( +282) search for confused edges: tig 12626 read 93804 pos 0-6186 IS confused by 3' edge to read 171875 - best edge read 13379 len 2993 erate 0.0170 score 2942.12 - alt edge len 2956 erate 0.0223 score 2890.08 - absdiff 52.04 percdiff 1.7845 tig 12626 read 93804 pos 0-6186 IS confused by 3' edge to read 433731 - best edge read 13379 len 2993 erate 0.0170 score 2942.12 - alt edge len 2004 erate 0.0354 score 1933.06 - absdiff 1009.06 percdiff 41.3959 saved region 2920:6711 - 2 best edges are potentially confused break tig 12626 into up to 3 pieces: 0 2420 unique (length 2420) 2420 7211 repeat (length 4791) 7211 11610 unique (length 4399) Creating Unitig 91346 Creating Unitig 91347 Creating Unitig 91348 For tig 12626 unique region 0 2420 - 0/ 1 reads repeat/unique - unitig 91346 created. For tig 12626 repeat region 2420 7211 - 18/ 0 reads repeat/unique - unitig 91347 created. For tig 12626 unique region 7211 11610 - 0/ 2 reads repeat/unique - unitig 91348 created. Annotating repeats in reads for tig 12627/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3960:6591 - contained in read 93929 10- 6591 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12628/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2208:5757 - closest read 440675 ( +2208) 0:5901 ( +144) (contained) saved region 2208:5757 - closest read 440678 ( +2170) 38:5908 ( +151) (contained) saved region 2208:5757 - closest read 440677 ( +1979) 229:5928 ( +171) (contained) saved region 2208:5757 - closest read 394578 ( +1857) 351:5875 ( +118) (contained) saved region 2208:5757 - closest read 133366 ( +277) 1931:5872 ( +115) (contained) saved region 2208:5757 - closest read 142439 ( +243) 1965:5902 ( +145) (contained) saved region 2208:5757 - closest read 133365 ( +232) 1976:5917 ( +160) (contained) saved region 2208:5757 - closest read 247853 ( +101) 2107:5872 ( +115) (contained) saved region 2208:5757 - closest read 93982 ( +96) 2112:8329 ( +2572) (contained) saved region 2208:5757 - closest 5' read 93982 ( +96) 2112:8329 ( +2572) saved region 2208:5757 - closest 3' read 440675 ( +2208) 0:5901 ( +144) search for confused edges: discard region 2208:5757 - no confusion in best edges Annotating repeats in reads for tig 12629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12631/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5059:4067 - contained in read 94248 0- 5533 discard region 5172:4619 - contained in read 94248 0- 5533 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12632/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12633/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12642/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12645/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12649/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12652/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 7313:10231 - contained in read 479505 5825- 13568 thickest edges to the repeat regions: saved region 5898:6823 - closest read 479505 ( +73) 5825:13568 ( +6745) (contained) saved region 5898:6823 - closest 5' read 479505 ( +73) 5825:13568 ( +6745) saved region 5898:6823 - closest 3' read 479505 ( +73) 5825:13568 ( +6745) search for confused edges: discard region 5898:6823 - no confusion in best edges Annotating repeats in reads for tig 12654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12655/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12658/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5656:5072 - contained in read 96850 0- 5607 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12663/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12668/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4210:8278 - closest 5' read 302577 ( +3705) 505:8174 ( -104) saved region 4210:8278 - closest 3' read 214978 ( -251) 4461:8795 ( +517) search for confused edges: discard region 4210:8278 - no confusion in best edges Annotating repeats in reads for tig 12670/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10259:8878 - contained in read 97967 0- 9873 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12679/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12682/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12683/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12688/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12695/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12696/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12697/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2955:5402 - contained in read 30567 1864- 5402 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12703/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12705/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12706/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. discard region 1538:3679 - contained in read 100794 0- 9071 discard region 3728:8409 - contained in read 100794 0- 9071 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12707/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12715/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3388:2007 - contained in read 101560 0- 2818 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12721/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7706:6673 - contained in read 219362 3079- 9361 discard region 7793:6712 - contained in read 219362 3079- 9361 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12723/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12726/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 6524:9738 - contained in read 103083 0- 9738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12729/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12730/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12733/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12734/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12737/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12742/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12743/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12749/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:3606 - closest 5' read 392071 ( +0) 0:3596 ( -10) saved region 0:3606 - closest 3' read 105201 ( -1496) 1496:4349 ( +743) search for confused edges: tig 12749 read 105201 pos 1496-4349 IS confused by 5' edge to read 299474 - best edge read 392071 len 2100 erate 0.0405 score 2014.95 - alt edge len 2033 erate 0.0335 score 1964.89 - absdiff 50.06 percdiff 2.5155 saved region 0:3606 - 1 best edges are potentially confused break tig 12749 into up to 2 pieces: 0 4106 repeat (length 4106) 4106 4349 unique (length 243) Creating Unitig 91349 Creating Unitig 91350 For tig 12749 repeat region 0 4106 - 7/ 0 reads repeat/unique - unitig 91349 created. For tig 12749 unique region 4106 4349 - 0/ 1 reads repeat/unique - unitig 91350 created. Annotating repeats in reads for tig 12750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12751/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12760/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 981:3 - contained in read 55452 0- 6882 discard region 2730:4751 - contained in read 55452 0- 6882 discard region 4786:6252 - contained in read 55452 0- 6882 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12768/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12769/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3446:6970 - closest read 283528 ( +3446) 0:6981 ( +11) (contained) saved region 3446:6970 - closest 5' read 283528 ( +3446) 0:6981 ( +11) saved region 3446:6970 - closest 3' read 283528 ( +3446) 0:6981 ( +11) search for confused edges: discard region 3446:6970 - no confusion in best edges Annotating repeats in reads for tig 12771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12772/90584. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 12319:15505 - contained in read 472127 2620- 15505 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12773/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12774/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4391:3057 - contained in read 107639 0- 7689 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12779/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12785/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12787/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 396:959 - contained in read 109081 0- 5588 discard region 1021:5777 - contained in read 141951 396- 5777 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12791/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12793/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12796/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12797/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12798/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12799/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12800/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12808/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12813/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4954:7279 - contained in read 511463 1684- 12833 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12817/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12818/90584. Annotated with 103 overlaps. Scan reads to discard spanned repeats. discard region 9010:14316 - contained in read 284140 6469- 14867 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12819/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12820/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 0:3710 - contained in read 339197 0- 7850 discard region 6075:8207 - contained in read 111854 2106- 8207 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12821/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4060:4951 - contained in read 199860 0- 5760 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12823/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12824/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 411:1882 - contained in read 112196 0- 4681 discard region 3640:2141 - contained in read 112196 0- 4681 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12829/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4528:6325 - closest 5' read 361325 ( +4528) 0:6310 ( -15) saved region 4528:6325 - closest 3' read 112879 ( -1045) 5573:12372 ( +6047) search for confused edges: discard region 4528:6325 - no confusion in best edges Annotating repeats in reads for tig 12831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12832/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12833/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5143:5898 - contained in read 113059 28- 5898 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12835/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12836/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12837/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12840/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 1238:2136 - contained in read 113420 0- 4782 discard region 4056:2852 - contained in read 113420 0- 4782 discard region 4875:9098 - contained in read 374711 2337- 10397 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12841/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12844/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:2304 - closest read 207004 ( +0) 0:2593 ( +289) (contained) saved region 0:2304 - closest 5' read 207004 ( +0) 0:2593 ( +289) saved region 0:2304 - closest 3' read 207004 ( +0) 0:2593 ( +289) search for confused edges: discard region 0:2304 - no confusion in best edges Annotating repeats in reads for tig 12846/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 13994:16557 - closest read 114910 ( +428) 13566:19463 ( +2906) (contained) saved region 13994:16557 - closest read 114911 ( +409) 13585:19454 ( +2897) (contained) saved region 13994:16557 - closest read 114912 ( +351) 13643:19335 ( +2778) (contained) saved region 13994:16557 - closest 5' read 114910 ( +428) 13566:19463 ( +2906) saved region 13994:16557 - closest 3' read 114910 ( +428) 13566:19463 ( +2906) search for confused edges: discard region 13994:16557 - no confusion in best edges Annotating repeats in reads for tig 12847/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12850/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12854/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12856/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12859/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12860/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12862/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 2092:2947 - contained in read 116371 0- 3611 discard region 4172:5433 - contained in read 494164 648- 5455 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12866/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1388:0 - contained in read 219153 0- 6255 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12871/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12872/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12873/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12876/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12877/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 233:7375 - closest read 35316 ( +210) 23:7375 ( +0) (contained) saved region 233:7375 - closest 5' read 35316 ( +210) 23:7375 ( +0) saved region 233:7375 - closest 3' read 35316 ( +210) 23:7375 ( +0) search for confused edges: discard region 233:7375 - no confusion in best edges Annotating repeats in reads for tig 12878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12879/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12884/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12886/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 4448:7374 - contained in read 183842 5- 7374 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12887/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12890/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12891/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12894/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12896/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12897/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12898/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5010:7133 - contained in read 119235 1- 7133 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12899/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12902/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12903/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 4839:6842 - contained in read 119643 79- 6842 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12909/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12910/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12912/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12915/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1858:3382 - contained in read 120582 42- 5217 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12916/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12918/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1605:2 - contained in read 120981 0- 4374 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12919/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 5260:5858 - contained in read 159481 3418- 8758 discard region 6668:8758 - contained in read 159481 3418- 8758 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12921/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12922/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 1180:2934 - contained in read 121134 0- 6966 discard region 3061:4449 - contained in read 121134 0- 6966 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12931/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12933/90584. Annotated with 68 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6669 - closest read 438980 ( +0) 0:6784 ( +115) (contained) saved region 0:6669 - closest 5' read 438980 ( +0) 0:6784 ( +115) saved region 0:6669 - closest 3' read 438980 ( +0) 0:6784 ( +115) search for confused edges: discard region 0:6669 - no confusion in best edges Annotating repeats in reads for tig 12934/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4270:3166 - contained in read 121823 0- 4359 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12947/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12949/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12951/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12952/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12957/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 0:2849 - contained in read 75755 0- 8972 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12959/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12960/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12961/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 218:5821 - closest read 124094 ( +218) 0:6184 ( +363) (contained) saved region 218:5821 - closest read 4898 ( +31) 187:8286 ( +2465) (contained) saved region 218:5821 - closest 5' read 4898 ( +31) 187:8286 ( +2465) saved region 218:5821 - closest 3' read 124094 ( +218) 0:6184 ( +363) search for confused edges: discard region 218:5821 - no confusion in best edges Annotating repeats in reads for tig 12962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12963/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12965/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12966/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2027:4926 - contained in read 124527 1499- 4944 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12974/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12976/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12987/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12992/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12994/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 9128:11068 - contained in read 126438 5728- 11073 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12996/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 12998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13000/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1942:5399 - contained in read 126758 0- 6802 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13001/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 633:3059 - closest 5' read 301798 ( +633) 0:2862 ( -197) saved region 633:3059 - closest 3' read 126885 ( -5) 638:8180 ( +5121) search for confused edges: discard region 633:3059 - no confusion in best edges Annotating repeats in reads for tig 13003/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13005/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13008/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13009/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13011/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13015/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13021/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13023/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2101:1513 - contained in read 506282 0- 3069 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13024/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13026/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13031/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13035/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 695:4821 - contained in read 128410 20- 5680 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13037/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13042/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13043/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1058:2614 - contained in read 128842 0- 6521 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13044/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13047/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13048/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 1926:2728 - contained in read 129517 0- 7878 discard region 3309:5743 - contained in read 129517 0- 7878 discard region 6309:7336 - contained in read 129517 0- 7878 discard region 7623:10551 - contained in read 415458 3201- 12019 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13050/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13052/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13057/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 4077:5752 - contained in read 130815 0- 6576 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13062/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13063/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13065/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13079/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13080/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13083/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2648:1334 - contained in read 132968 0- 5542 discard region 2654:1490 - contained in read 132968 0- 5542 discard region 7733:11431 - contained in read 412483 2131- 11566 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13084/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13085/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2798:5186 - contained in read 133305 0- 6175 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13088/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13092/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1608:2942 - contained in read 12718 0- 9176 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13093/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 1179:5130 - contained in read 424036 0- 6498 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13095/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13099/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13102/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 2228:4494 - contained in read 290969 12- 7165 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13103/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13107/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13110/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13112/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13115/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13118/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3432:4377 - contained in read 480426 0- 6212 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13120/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13128/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3114:6195 - contained in read 439327 1015- 6323 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13129/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13130/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13133/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2127:1033 - contained in read 137061 0- 3485 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13134/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13138/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13140/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13142/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3664:5810 - contained in read 257227 291- 5841 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13146/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13148/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13151/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3762:5877 - contained in read 499313 0- 7883 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13154/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 165:1375 - contained in read 139243 0- 6566 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13155/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13157/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5064:3552 - contained in read 139694 0- 5583 discard region 5088:3951 - contained in read 139694 0- 5583 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13158/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1257:647 - contained in read 139793 0- 4270 thickest edges to the repeat regions: saved region 1735:4247 - closest read 139793 ( +1735) 0:4270 ( +23) (contained) saved region 1735:4247 - closest read 139794 ( +1520) 215:4247 ( +0) (contained) saved region 1735:4247 - closest 5' read 139793 ( +1735) 0:4270 ( +23) saved region 1735:4247 - closest 3' read 139793 ( +1735) 0:4270 ( +23) search for confused edges: discard region 1735:4247 - no confusion in best edges Annotating repeats in reads for tig 13159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13174/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13176/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 66:1095 - contained in read 267243 0- 2416 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13179/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13184/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13186/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13188/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13190/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 727:5974 - contained in read 269516 0- 13655 discard region 9896:16528 - contained in read 142889 8673- 16650 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13193/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13196/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3059:5692 - contained in read 143598 246- 5723 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13200/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13211/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13213/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13214/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 7873:10655 - contained in read 504183 30- 11679 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13215/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13216/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13218/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13227/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13232/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5256:8422 - closest 5' read 316381 ( +885) 4371:8406 ( -16) saved region 5256:8422 - closest 3' read 146724 ( -945) 6201:8560 ( +138) search for confused edges: discard region 5256:8422 - no confusion in best edges Annotating repeats in reads for tig 13233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13234/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13235/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13237/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13239/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13244/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13256/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13257/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13260/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13265/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3742:7036 - contained in read 278847 73- 7036 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13267/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13271/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13274/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13276/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13278/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13280/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1349:4096 - closest read 150032 ( +1349) 0:4376 ( +280) (contained) saved region 1349:4096 - closest read 150029 ( +18) 1331:6302 ( +2206) (contained) saved region 1349:4096 - closest 5' read 150029 ( +18) 1331:6302 ( +2206) saved region 1349:4096 - closest 3' read 150032 ( +1349) 0:4376 ( +280) search for confused edges: discard region 1349:4096 - no confusion in best edges Annotating repeats in reads for tig 13282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13288/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7900:6480 - contained in read 150793 0- 7850 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13292/90584. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 0:8193 - contained in read 166078 0- 9552 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13294/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4974:6126 - closest read 151176 ( +0) 4974:10252 ( +4126) (contained) saved region 4974:6126 - closest 5' read 151176 ( +0) 4974:10252 ( +4126) saved region 4974:6126 - closest 3' read 151176 ( +0) 4974:10252 ( +4126) search for confused edges: discard region 4974:6126 - no confusion in best edges Annotating repeats in reads for tig 13295/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 60:3861 - closest read 151265 ( +60) 0:3869 ( +8) (contained) saved region 60:3861 - closest read 151266 ( +47) 13:3881 ( +20) (contained) saved region 60:3861 - closest read 151268 ( +11) 49:3870 ( +9) (contained) saved region 60:3861 - closest 5' read 151266 ( +47) 13:3881 ( +20) saved region 60:3861 - closest 3' read 151265 ( +60) 0:3869 ( +8) search for confused edges: discard region 60:3861 - no confusion in best edges Annotating repeats in reads for tig 13298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13299/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13305/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 5688:9908 - contained in read 329700 2160- 11378 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13306/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13311/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2676:4048 - contained in read 139223 0- 6261 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13316/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13318/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13321/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13323/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13324/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 10139:13274 - contained in read 192070 9165- 15733 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13327/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13331/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13338/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13340/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13344/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 854:4714 - contained in read 312157 295- 4714 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13350/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13363/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13366/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13370/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13374/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:527 - contained in read 157837 0- 4341 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13379/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:3504 - contained in read 5771 0- 9210 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13384/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1784:20 - contained in read 471814 0- 5569 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13386/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2614:3227 - contained in read 158638 0- 6208 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13388/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13390/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13393/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13397/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1242 - contained in read 159382 0- 2910 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13405/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13407/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13411/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13413/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13414/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13417/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13419/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 4668:5895 - contained in read 48085 3912- 7525 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13431/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13433/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2794:5180 - contained in read 162455 3- 6214 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13436/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 0:3555 - contained in read 32576 0- 5354 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13437/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4037:4704 - closest read 162584 ( +4037) 0:5119 ( +415) (contained) saved region 4037:4704 - closest read 162579 ( +4029) 8:5136 ( +432) (contained) saved region 4037:4704 - closest read 162581 ( +4029) 8:5112 ( +408) (contained) saved region 4037:4704 - closest read 162583 ( +4028) 9:5129 ( +425) (contained) saved region 4037:4704 - closest read 162580 ( +4027) 10:5120 ( +416) (contained) saved region 4037:4704 - closest read 162578 ( +3910) 127:5106 ( +402) (contained) saved region 4037:4704 - closest read 475508 ( +0) 4037:9532 ( +4828) (contained) saved region 4037:4704 - closest 5' read 475508 ( +0) 4037:9532 ( +4828) saved region 4037:4704 - closest 3' read 162584 ( +4037) 0:5119 ( +415) search for confused edges: discard region 4037:4704 - no confusion in best edges Annotating repeats in reads for tig 13439/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13441/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13443/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13445/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13447/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3460:3967 - contained in read 305844 0- 6040 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13450/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13453/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13460/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13461/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 3377:4063 - contained in read 164541 0- 7690 discard region 7141:7686 - contained in read 262281 3377- 8744 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13475/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 1684:6366 - contained in read 165658 0- 8579 discard region 7003:14808 - contained in read 17237 4303- 14808 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13476/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13477/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13478/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13479/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4360:5934 - contained in read 166135 0- 6523 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13484/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 730:4482 - contained in read 136979 16- 5726 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13486/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 3331:5554 - contained in read 209732 2236- 5953 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13491/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13500/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13501/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1900:19 - contained in read 167406 0- 5470 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13504/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:5777 - contained in read 167608 0- 7436 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13509/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3849:5557 - closest read 483269 ( +2777) 1072:5565 ( +8) (contained) saved region 3849:5557 - closest read 218813 ( +680) 3169:5564 ( +7) (contained) saved region 3849:5557 - closest read 143177 ( +3) 3846:10317 ( +4760) (contained) saved region 3849:5557 - closest 5' read 143177 ( +3) 3846:10317 ( +4760) saved region 3849:5557 - closest 3' read 483269 ( +2777) 1072:5565 ( +8) search for confused edges: discard region 3849:5557 - no confusion in best edges Annotating repeats in reads for tig 13511/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13513/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13515/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13519/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6657:5728 - contained in read 500824 1107- 6664 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13523/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3702:3050 - contained in read 168823 0- 3563 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13525/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13526/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13532/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13534/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13541/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13543/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13547/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13553/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5835:3498 - contained in read 171558 0- 8547 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13566/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13567/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4935:5599 - contained in read 483197 204- 8810 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13576/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 0:2734 - contained in read 173120 0- 3543 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13578/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13579/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 289:3075 - closest read 173321 ( +289) 0:3254 ( +179) (contained) saved region 289:3075 - closest read 224660 ( +289) 0:3084 ( +9) (contained) saved region 289:3075 - closest read 394866 ( +20) 269:3600 ( +525) (contained) saved region 289:3075 - closest read 224661 ( +19) 270:3131 ( +56) (contained) saved region 289:3075 - closest 5' read 394866 ( +20) 269:3600 ( +525) saved region 289:3075 - closest 3' read 173321 ( +289) 0:3254 ( +179) search for confused edges: discard region 289:3075 - no confusion in best edges Annotating repeats in reads for tig 13581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13584/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13586/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13597/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4744:5769 - closest read 228473 ( +2434) 2310:5773 ( +4) (contained) saved region 4744:5769 - closest read 174695 ( +382) 4362:5850 ( +81) (contained) saved region 4744:5769 - closest read 30117 ( +379) 4365:5781 ( +12) (contained) saved region 4744:5769 - closest read 30116 ( +377) 4367:5846 ( +77) (contained) saved region 4744:5769 - closest read 115655 ( +375) 4369:5770 ( +1) (contained) saved region 4744:5769 - closest 5' read 174695 ( +382) 4362:5850 ( +81) saved region 4744:5769 - closest 3' read 228473 ( +2434) 2310:5773 ( +4) search for confused edges: discard region 4744:5769 - no confusion in best edges Annotating repeats in reads for tig 13598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13599/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4146:4753 - contained in read 220829 0- 10656 discard region 8274:8884 - contained in read 220829 0- 10656 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13600/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13606/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4449:3351 - contained in read 175406 0- 4039 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13607/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13620/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4002:6209 - contained in read 176627 0- 7982 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13627/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13628/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13632/90584. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 844:4567 - contained in read 291224 334- 7460 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13635/90584. Annotated with 47 overlaps. Scan reads to discard spanned repeats. discard region 0:4586 - contained in read 177677 0- 6106 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13636/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 1971:2795 - contained in read 177843 0- 5240 discard region 2838:5117 - contained in read 177841 94- 6227 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13639/90584. Annotated with 49 overlaps. Scan reads to discard spanned repeats. discard region 3940:4774 - contained in read 178161 0- 7380 discard region 4821:6969 - contained in read 203797 1785- 7482 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13642/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 11093:10512 - contained in read 178484 5232- 11086 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13643/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2334:987 - contained in read 178840 0- 5413 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13647/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13648/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13653/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13655/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13658/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6267:10762 - contained in read 150102 3992- 13997 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13659/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13663/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4591:0 - contained in read 180673 0- 5787 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13668/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13670/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 20117:24041 - closest read 347200 (+16971) 3146:24060 ( +19) (contained) saved region 20117:24041 - closest read 181676 ( +33) 20084:25253 ( +1212) (contained) saved region 20117:24041 - closest read 354397 ( +33) 20084:24492 ( +451) (contained) saved region 20117:24041 - closest 5' read 181676 ( +33) 20084:25253 ( +1212) saved region 20117:24041 - closest 3' read 347200 (+16971) 3146:24060 ( +19) search for confused edges: discard region 20117:24041 - no confusion in best edges Annotating repeats in reads for tig 13671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13672/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2039:7349 - closest read 437949 ( +1431) 608:7526 ( +177) (contained) saved region 2039:7349 - closest 5' read 437949 ( +1431) 608:7526 ( +177) saved region 2039:7349 - closest 3' read 437949 ( +1431) 608:7526 ( +177) search for confused edges: discard region 2039:7349 - no confusion in best edges Annotating repeats in reads for tig 13673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13682/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13685/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13691/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:2631 - contained in read 183867 0- 4677 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13693/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13695/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13700/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13704/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3557:4998 - contained in read 185905 0- 11097 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13706/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13707/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13711/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2522:5417 - closest read 186493 ( +2455) 67:5444 ( +27) (contained) saved region 2522:5417 - closest read 408687 ( +2452) 70:5714 ( +297) (contained) saved region 2522:5417 - closest 5' read 408687 ( +2452) 70:5714 ( +297) saved region 2522:5417 - closest 3' read 186493 ( +2455) 67:5444 ( +27) search for confused edges: discard region 2522:5417 - no confusion in best edges Annotating repeats in reads for tig 13712/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13719/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4774:3008 - contained in read 359215 0- 7735 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13721/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13724/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8160:14750 - closest read 449749 ( +8160) 0:14860 ( +110) (contained) saved region 8160:14750 - closest 5' read 449749 ( +8160) 0:14860 ( +110) saved region 8160:14750 - closest 3' read 449749 ( +8160) 0:14860 ( +110) search for confused edges: discard region 8160:14750 - no confusion in best edges Annotating repeats in reads for tig 13725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13728/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13729/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13730/90584. Annotated with 116 overlaps. Scan reads to discard spanned repeats. discard region 0:3701 - contained in read 365856 0- 5445 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13733/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13737/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4373:5494 - contained in read 394079 2321- 8518 discard region 6203:8518 - contained in read 394079 2321- 8518 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13739/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1550:2686 - contained in read 189170 0- 6994 discard region 5966:8600 - contained in read 199503 1563- 8687 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13742/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13747/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 982:2077 - contained in read 508870 310- 3690 discard region 3687:3065 - contained in read 508870 310- 3690 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13763/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13770/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5056:4505 - contained in read 191431 2850- 5057 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13779/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13784/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13794/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3974:20 - contained in read 193300 0- 3698 discard region 5602:47 - contained in read 193300 0- 3698 discard region 5605:1803 - contained in read 193300 0- 3698 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13799/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13800/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13801/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5423 - closest 5' read 277054 ( +0) 0:5304 ( -119) saved region 0:5423 - closest 3' read 418695 ( -495) 495:5448 ( +25) search for confused edges: tig 13801 read 418696 pos 660-5422 IS confused by 3' edge to read 184928 - best edge read 277054 len 4644 erate 0.0301 score 4504.22 - alt edge len 2721 erate 0.0132 score 2685.08 - absdiff 1819.13 percdiff 50.6067 tig 13801 read 194156 pos 1433-5727 IS confused by 5' edge to read 184928 - best edge read 418696 len 3989 erate 0.0274 score 3879.70 - alt edge len 1953 erate 0.0236 score 1906.91 - absdiff 1972.79 percdiff 68.1847 saved region 0:5423 - 2 best edges are potentially confused Annotating repeats in reads for tig 13803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13804/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13808/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13811/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13819/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13820/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1447:3845 - contained in read 134689 0- 4952 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13821/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13832/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3326:4609 - contained in read 143639 830- 5615 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13835/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13836/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13845/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13850/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13851/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13853/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 0:2483 - contained in read 290780 0- 4723 discard region 2450:4742 - contained in read 198001 1319- 7245 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13854/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13859/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 1288:6919 - contained in read 199960 588- 9457 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13861/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13863/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4493:6457 - contained in read 508978 2867- 8185 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13866/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13870/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13875/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13876/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13879/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13883/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13885/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13887/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3264:4695 - contained in read 526063 0- 5756 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13889/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13890/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13891/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13893/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 3:4609 - contained in read 54551 0- 5584 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13894/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13896/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4552:3464 - contained in read 201417 0- 5178 discard region 4980:5968 - contained in read 201415 1410- 5969 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13897/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13899/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13900/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13902/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13907/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5907:3505 - contained in read 376480 0- 5354 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13914/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13915/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1436:879 - contained in read 202755 0- 7738 discard region 1634:2785 - contained in read 202755 0- 7738 discard region 2783:4773 - contained in read 202755 0- 7738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13919/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13921/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 449:1520 - closest read 203259 ( +449) 0:1521 ( +1) (contained) saved region 449:1520 - closest read 46767 ( +0) 449:6011 ( +4491) (contained) saved region 449:1520 - closest 5' read 46767 ( +0) 449:6011 ( +4491) saved region 449:1520 - closest 3' read 203259 ( +449) 0:1521 ( +1) search for confused edges: discard region 449:1520 - no confusion in best edges Annotating repeats in reads for tig 13922/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13924/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13925/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13929/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13930/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:1423 - contained in read 203913 0- 4256 discard region 2030:3751 - contained in read 203913 0- 4256 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13934/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13936/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13937/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1130:2443 - contained in read 204693 0- 6278 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13942/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13949/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13952/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 3453:6084 - contained in read 205497 0- 8358 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13953/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4855:5540 - closest read 452293 ( +4097) 758:5556 ( +16) (contained) saved region 4855:5540 - closest read 358281 ( +0) 4855:11147 ( +5607) (contained) saved region 4855:5540 - closest 5' read 358281 ( +0) 4855:11147 ( +5607) saved region 4855:5540 - closest 3' read 452293 ( +4097) 758:5556 ( +16) search for confused edges: discard region 4855:5540 - no confusion in best edges Annotating repeats in reads for tig 13954/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13960/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3374:4852 - contained in read 206268 0- 5541 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13961/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13963/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8858:9633 - closest 5' read 522820 ( +2674) 6184:9629 ( -4) saved region 8858:9633 - closest 3' read 354980 ( -117) 8975:11561 ( +1928) search for confused edges: tig 13963 read 354980 pos 8975-11561 IS confused by 5' edge to read 206378 - best edge read 213121 len 611 erate 0.0314 score 591.81 - alt edge len 650 erate 0.0186 score 637.91 - absdiff 46.10 percdiff 7.4969 saved region 8858:9633 - 1 best edges are potentially confused break tig 13963 into up to 3 pieces: 0 8358 unique (length 8358) 8358 10133 repeat (length 1775) 10133 11561 unique (length 1428) Creating Unitig 91351 Creating Unitig 91352 For tig 13963 unique region 0 8358 - 0/ 5 reads repeat/unique - unitig 91351 created. For tig 13963 repeat region 8358 10133 - 0/ 0 repeat/unique reads - no new unitig created. For tig 13963 unique region 10133 11561 - 0/ 1 reads repeat/unique - unitig 91352 created. Annotating repeats in reads for tig 13965/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13966/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13974/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13982/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13987/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13996/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5571:1258 - contained in read 209276 0- 6030 discard region 6030:2199 - contained in read 209276 0- 6030 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 13999/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14000/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14011/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14018/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 1215:4981 - contained in read 210831 0- 4981 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14021/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14029/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3642:4664 - contained in read 211801 0- 5695 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14033/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14035/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14038/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14039/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:4381 - contained in read 212586 0- 5554 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14049/90584. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 6949:7830 - contained in read 408077 2111- 7830 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14050/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14054/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 8667:10090 - contained in read 409878 0- 12377 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14055/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14058/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14077/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14085/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4453:3278 - contained in read 253572 0- 4633 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14087/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14110/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1944:4463 - contained in read 362452 290- 4992 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14118/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14120/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 7383:12242 - contained in read 327365 3035- 13601 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14121/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14134/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14135/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5533:6647 - closest read 220816 ( +0) 5533:12628 ( +5981) (contained) saved region 5533:6647 - closest 5' read 220816 ( +0) 5533:12628 ( +5981) saved region 5533:6647 - closest 3' read 220816 ( +0) 5533:12628 ( +5981) search for confused edges: discard region 5533:6647 - no confusion in best edges Annotating repeats in reads for tig 14139/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14150/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3013:4011 - contained in read 171236 0- 6765 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14155/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14158/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14159/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2453:6214 - contained in read 223065 0- 6214 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14160/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14161/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14162/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2380:6862 - contained in read 505907 469- 7546 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14167/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14174/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14184/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14186/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14188/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14190/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 148:3620 - contained in read 224931 0- 6351 discard region 5088:3823 - contained in read 224931 0- 6351 discard region 6317:4040 - contained in read 224931 0- 6351 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14193/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14205/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1184:336 - contained in read 526694 0- 1674 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14208/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14211/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 1269:8855 - contained in read 378793 41- 8855 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14212/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14215/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4146:8696 - contained in read 208143 246- 9264 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14216/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14217/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14227/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14229/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 0:2224 - contained in read 139946 0- 6216 discard region 3555:2322 - contained in read 139946 0- 6216 discard region 5395:4315 - contained in read 139946 0- 6216 discard region 5954:4874 - contained in read 139946 0- 6216 discard region 6209:5572 - contained in read 139946 0- 6216 discard region 6215:5674 - contained in read 139946 0- 6216 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14230/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14232/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14234/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14235/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14244/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4127:5916 - contained in read 228329 0- 5930 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14249/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 560:7721 - contained in read 228637 0- 9024 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14251/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14252/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14253/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14254/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1:3876 - contained in read 229290 0- 6282 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14257/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14259/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4977:5699 - contained in read 427592 4257- 8580 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14262/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14263/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14265/90584. Annotated with 45 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2291:4484 - closest 5' read 8889 ( +2291) 0:4466 ( -18) saved region 2291:4484 - closest 3' read 452166 ( -10) 2301:9022 ( +4538) search for confused edges: tig 14265 read 8889 pos 0-4466 IS confused by 5' edge to read 101851 - best edge read 452166 len 2158 erate 0.0380 score 2076.00 - alt edge len 2000 erate 0.0275 score 1945.00 - absdiff 131.00 percdiff 6.5156 saved region 2291:4484 - 1 best edges are potentially confused break tig 14265 into up to 3 pieces: 0 1791 unique (length 1791) 1791 4984 repeat (length 3193) 4984 9064 unique (length 4080) Creating Unitig 91353 Creating Unitig 91354 Creating Unitig 91355 For tig 14265 unique region 0 1791 - 0/ 4 reads repeat/unique - unitig 91353 created. For tig 14265 repeat region 1791 4984 - 15/ 0 reads repeat/unique - unitig 91355 created. For tig 14265 unique region 4984 9064 - 0/ 2 reads repeat/unique - unitig 91354 created. Annotating repeats in reads for tig 14266/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14267/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14275/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5643:7773 - contained in read 111270 401- 8710 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14276/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3331:5215 - contained in read 176005 51- 7263 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14278/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14281/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14283/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8554:7983 - contained in read 164465 0- 11488 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14287/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14299/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14306/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14311/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5857:3976 - contained in read 232941 0- 5904 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14312/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14316/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14318/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14321/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 12185:10959 - contained in read 458486 3933- 13505 thickest edges to the repeat regions: saved region 3429:10062 - closest 5' read 2659 ( +3104) 325:6754 ( -3308) saved region 3429:10062 - closest 3' read 414382 ( -174) 3603:11295 ( +1233) search for confused edges: discard region 3429:10062 - no confusion in best edges Annotating repeats in reads for tig 14324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14325/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14331/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14335/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5993:7795 - contained in read 161737 0- 8690 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14336/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 997:14502 - closest read 458348 ( +997) 0:14512 ( +10) (contained) saved region 997:14502 - closest 5' read 458348 ( +997) 0:14512 ( +10) saved region 997:14502 - closest 3' read 458348 ( +997) 0:14512 ( +10) search for confused edges: discard region 997:14502 - no confusion in best edges Annotating repeats in reads for tig 14337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14343/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14347/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14354/90584. Annotated with 637 overlaps. Scan reads to discard spanned repeats. discard region 1808:5735 - contained in read 236537 0- 6525 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14356/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3577:1362 - contained in read 518384 0- 7345 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14363/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2466:6647 - closest read 321701 ( +419) 2047:8067 ( +1420) (contained) saved region 2466:6647 - closest 5' read 321701 ( +419) 2047:8067 ( +1420) saved region 2466:6647 - closest 3' read 321701 ( +419) 2047:8067 ( +1420) search for confused edges: discard region 2466:6647 - no confusion in best edges Annotating repeats in reads for tig 14364/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14366/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14367/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14370/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2734:3856 - contained in read 237707 0- 7175 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14371/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1999 - contained in read 26801 0- 3873 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14373/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3595:2883 - contained in read 238082 0- 5035 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14374/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 288:3113 - contained in read 332125 0- 6608 discard region 3955:3205 - contained in read 332125 0- 6608 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14375/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1650:5731 - contained in read 343278 1045- 9287 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14376/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14381/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14387/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:2984 - contained in read 238859 0- 7368 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14389/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14391/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1982:3412 - closest read 279460 ( +1914) 68:3424 ( +12) (contained) saved region 1982:3412 - closest read 279461 ( +1913) 69:3426 ( +14) (contained) saved region 1982:3412 - closest read 119494 ( +1819) 163:3428 ( +16) (contained) saved region 1982:3412 - closest read 60153 ( +1511) 471:3438 ( +26) (contained) saved region 1982:3412 - closest read 225228 ( +1212) 770:3422 ( +10) (contained) saved region 1982:3412 - closest read 51206 ( +1185) 797:3430 ( +18) (contained) saved region 1982:3412 - closest read 309577 ( +1145) 837:3425 ( +13) (contained) saved region 1982:3412 - closest read 470546 ( +1008) 974:3418 ( +6) (contained) saved region 1982:3412 - closest read 85640 ( +499) 1483:3425 ( +13) (contained) saved region 1982:3412 - closest 5' read 60153 ( +1511) 471:3438 ( +26) saved region 1982:3412 - closest 3' read 279460 ( +1914) 68:3424 ( +12) search for confused edges: discard region 1982:3412 - no confusion in best edges Annotating repeats in reads for tig 14396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14400/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14413/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14414/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14417/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14418/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 250:1927 - contained in read 240963 0- 7271 discard region 3850:4798 - contained in read 240963 0- 7271 thickest edges to the repeat regions: saved region 5249:7290 - closest read 498474 ( +1690) 3559:7719 ( +429) (contained) saved region 5249:7290 - closest read 274112 ( +0) 5249:12088 ( +4798) (contained) saved region 5249:7290 - closest 5' read 274112 ( +0) 5249:12088 ( +4798) saved region 5249:7290 - closest 3' read 498474 ( +1690) 3559:7719 ( +429) search for confused edges: discard region 5249:7290 - no confusion in best edges Annotating repeats in reads for tig 14419/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14422/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14433/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14434/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1098:2323 - contained in read 507898 0- 4257 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14438/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3710:6316 - closest read 366181 ( +0) 3710:8943 ( +2627) (contained) saved region 3710:6316 - closest 5' read 366181 ( +0) 3710:8943 ( +2627) saved region 3710:6316 - closest 3' read 366181 ( +0) 3710:8943 ( +2627) search for confused edges: discard region 3710:6316 - no confusion in best edges Annotating repeats in reads for tig 14439/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14441/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:7633 - closest read 242723 ( +0) 0:7710 ( +77) (contained) saved region 0:7633 - closest 5' read 242723 ( +0) 0:7710 ( +77) saved region 0:7633 - closest 3' read 242723 ( +0) 0:7710 ( +77) search for confused edges: discard region 0:7633 - no confusion in best edges Annotating repeats in reads for tig 14442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14450/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14457/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14466/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 4966:5497 - contained in read 243959 0- 7574 discard region 5814:9232 - contained in read 513875 3889- 9296 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14469/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14470/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7972:6948 - contained in read 362068 0- 7640 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14475/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2383:11 - contained in read 244437 0- 2975 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14476/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14480/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14485/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14489/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14491/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14492/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7666:6977 - contained in read 245769 1638- 8780 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14497/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14499/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 548:0 - contained in read 246002 0- 5659 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14507/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14508/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 8101:8874 - contained in read 247226 3367- 12337 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14511/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14513/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14514/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14515/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14520/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7462:5273 - contained in read 325978 0- 8607 discard region 7466:6404 - contained in read 325978 0- 8607 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14532/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14534/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14535/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2411:2998 - closest read 249129 ( +42) 2369:9199 ( +6201) (contained) saved region 2411:2998 - closest read 249127 ( +0) 2411:9213 ( +6215) (contained) saved region 2411:2998 - closest 5' read 249127 ( +0) 2411:9213 ( +6215) saved region 2411:2998 - closest 3' read 249129 ( +42) 2369:9199 ( +6201) search for confused edges: discard region 2411:2998 - no confusion in best edges Annotating repeats in reads for tig 14538/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2951:5067 - contained in read 249245 11- 6500 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14541/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14543/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14547/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14551/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14557/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:2157 - closest read 251196 ( +0) 0:2309 ( +152) (contained) saved region 0:2157 - closest 5' read 251196 ( +0) 0:2309 ( +152) saved region 0:2157 - closest 3' read 251196 ( +0) 0:2309 ( +152) search for confused edges: discard region 0:2157 - no confusion in best edges Annotating repeats in reads for tig 14558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14573/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14576/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14577/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4167:7178 - contained in read 252657 89- 7181 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14578/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2788:3742 - contained in read 104182 0- 5741 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14582/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4934:7269 - contained in read 252866 3- 7269 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14585/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14586/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14589/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14600/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14604/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 10:5103 - contained in read 5694 0- 6105 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14606/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14610/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14627/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14638/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:1251 - contained in read 328884 0- 5585 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14639/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2635:1171 - contained in read 257666 0- 6734 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14642/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 3690:6877 - contained in read 434325 307- 6879 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14645/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14649/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14652/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4804:9322 - closest 5' read 425063 ( +4804) 0:8689 ( -633) saved region 4804:9322 - closest 3' read 258468 ( -1656) 6460:13952 ( +4630) search for confused edges: discard region 4804:9322 - no confusion in best edges Annotating repeats in reads for tig 14654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14658/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14662/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4718:5829 - closest read 258944 ( +295) 4423:5843 ( +14) (contained) saved region 4718:5829 - closest 5' read 258944 ( +295) 4423:5843 ( +14) saved region 4718:5829 - closest 3' read 258944 ( +295) 4423:5843 ( +14) search for confused edges: discard region 4718:5829 - no confusion in best edges Annotating repeats in reads for tig 14664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14669/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2696:3994 - contained in read 176764 0- 5674 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14682/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 695:4059 - contained in read 260279 0- 4868 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14687/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4178:5763 - contained in read 385093 0- 7122 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14696/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5700:4577 - contained in read 261218 0- 5550 discard region 5704:4583 - contained in read 261218 0- 5550 discard region 5704:4604 - contained in read 261218 0- 5550 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14701/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14703/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14712/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14728/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4573:7729 - contained in read 263549 419- 7729 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14729/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14739/90584. Annotated with 116 overlaps. Scan reads to discard spanned repeats. discard region 1248:4341 - contained in read 197155 110- 4362 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14743/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14750/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 123:3855 - contained in read 526489 0- 4415 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14751/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14753/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 10:2355 - contained in read 71040 0- 9341 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14759/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14763/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14768/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14773/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14777/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4421:5524 - contained in read 267367 0- 6629 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14785/90584. Annotated with 72 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1755:7018 - closest read 268131 ( +1755) 0:7047 ( +29) (contained) saved region 1755:7018 - closest read 362164 ( +299) 1456:7026 ( +8) (contained) saved region 1755:7018 - closest 5' read 268131 ( +1755) 0:7047 ( +29) saved region 1755:7018 - closest 3' read 268131 ( +1755) 0:7047 ( +29) search for confused edges: tig 14785 read 528083 pos 3453-11006 IS confused by 3' edge to read 64952 - best edge read 362164 len 3552 erate 0.0169 score 3491.97 - alt edge len 3507 erate 0.0315 score 3396.53 - absdiff 95.44 percdiff 2.7710 tig 14785 read 528083 pos 3453-11006 IS confused by 3' edge to read 331714 - best edge read 362164 len 3552 erate 0.0169 score 3491.97 - alt edge len 3286 erate 0.0254 score 3202.54 - absdiff 289.44 percdiff 8.6470 tig 14785 read 528083 pos 3453-11006 IS confused by 3' edge to read 343080 - best edge read 362164 len 3552 erate 0.0169 score 3491.97 - alt edge len 2321 erate 0.0284 score 2255.08 - absdiff 1236.89 percdiff 43.0442 saved region 1755:7018 - 3 best edges are potentially confused break tig 14785 into up to 3 pieces: 0 1255 unique (length 1255) 1255 7518 repeat (length 6263) 7518 11006 unique (length 3488) Creating Unitig 91356 Creating Unitig 91357 Creating Unitig 91358 For tig 14785 unique region 0 1255 - 0/ 9 reads repeat/unique - unitig 91356 created. For tig 14785 repeat region 1255 7518 - 12/ 0 reads repeat/unique - unitig 91357 created. For tig 14785 unique region 7518 11006 - 0/ 2 reads repeat/unique - unitig 91358 created. Annotating repeats in reads for tig 14786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14791/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14793/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14798/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14799/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14801/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:618 - contained in read 141693 0- 1891 thickest edges to the repeat regions: saved region 1222:3145 - closest 5' read 141693 ( +1222) 0:1891 ( -1254) saved region 1222:3145 - closest 3' read 43803 ( -82) 1304:5768 ( +2623) search for confused edges: discard region 1222:3145 - no confusion in best edges Annotating repeats in reads for tig 14803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14804/90584. Annotated with 152 overlaps. Scan reads to discard spanned repeats. discard region 3530:5754 - contained in read 269351 414- 5754 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14818/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14819/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14823/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14832/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14835/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14836/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 1919:5472 - contained in read 471187 657- 8148 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14842/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2811:4135 - contained in read 271879 676- 4172 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14844/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 10500:5307 - contained in read 57799 0- 10109 discard region 11673:14197 - contained in read 143930 7371- 18926 discard region 14699:17698 - contained in read 143930 7371- 18926 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14845/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14847/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14848/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14850/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14851/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14855/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1455:3065 - contained in read 90537 0- 6388 discard region 6386:4863 - contained in read 90537 0- 6388 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14860/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14861/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14870/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14873/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14889/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14891/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14892/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 313:1455 - contained in read 276156 0- 2823 discard region 2048:2820 - contained in read 185592 313- 5452 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14894/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1000:6558 - closest read 276613 ( +1000) 0:6570 ( +12) (contained) saved region 1000:6558 - closest read 260818 ( +494) 506:9956 ( +3398) (contained) saved region 1000:6558 - closest read 260819 ( +449) 551:10036 ( +3478) (contained) saved region 1000:6558 - closest 5' read 260819 ( +449) 551:10036 ( +3478) saved region 1000:6558 - closest 3' read 276613 ( +1000) 0:6570 ( +12) search for confused edges: discard region 1000:6558 - no confusion in best edges Annotating repeats in reads for tig 14895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14897/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14906/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3133:5322 - contained in read 277919 474- 5445 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14907/90584. Annotated with 538 overlaps. Scan reads to discard spanned repeats. discard region 1822:7436 - contained in read 152529 141- 7436 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14909/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14917/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6220:6737 - contained in read 318313 4607- 9129 thickest edges to the repeat regions: saved region 4403:5033 - closest read 278747 ( +4116) 287:5266 ( +233) (contained) saved region 4403:5033 - closest 5' read 278747 ( +4116) 287:5266 ( +233) saved region 4403:5033 - closest 3' read 278747 ( +4116) 287:5266 ( +233) search for confused edges: discard region 4403:5033 - no confusion in best edges Annotating repeats in reads for tig 14919/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14920/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14927/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:3724 - closest 5' read 444947 ( +0) 0:3713 ( -11) saved region 0:3724 - closest 3' read 279955 ( -3084) 3084:7539 ( +3815) search for confused edges: tig 14927 read 279955 pos 3084-7539 IS confused by 5' edge to read 444951 - best edge read 444947 len 629 erate 0.0306 score 609.75 - alt edge len 627 erate 0.0241 score 611.89 - absdiff 2.14 percdiff 0.3498 saved region 0:3724 - 1 best edges are potentially confused break tig 14927 into up to 2 pieces: 0 4224 repeat (length 4224) 4224 7539 unique (length 3315) Creating Unitig 91359 Creating Unitig 91360 For tig 14927 repeat region 0 4224 - 1/ 0 reads repeat/unique - unitig 91359 created. For tig 14927 unique region 4224 7539 - 0/ 7 reads repeat/unique - unitig 91360 created. Annotating repeats in reads for tig 14932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14939/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14942/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14952/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14953/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14954/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14955/90584. Annotated with 63 overlaps. Scan reads to discard spanned repeats. discard region 507:0 - contained in read 448093 0- 6726 discard region 1860:3424 - contained in read 448093 0- 6726 discard region 3517:4608 - contained in read 448093 0- 6726 discard region 9041:10917 - contained in read 282067 6436- 10921 thickest edges to the repeat regions: saved region 6105:8969 - closest read 209477 ( +386) 5719:10279 ( +1310) (contained) saved region 6105:8969 - closest 5' read 209477 ( +386) 5719:10279 ( +1310) saved region 6105:8969 - closest 3' read 209477 ( +386) 5719:10279 ( +1310) search for confused edges: discard region 6105:8969 - no confusion in best edges Annotating repeats in reads for tig 14959/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14960/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14964/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 1922:6127 - contained in read 102504 110- 7101 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14966/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14970/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 1565:4834 - contained in read 282936 0- 6627 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14974/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14982/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 94:612 - contained in read 284157 0- 3379 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14986/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14987/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14992/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14996/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 14999/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15005/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15017/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. discard region 3712:4820 - contained in read 287028 0- 5879 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15019/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15020/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15027/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 6766:7371 - contained in read 288074 78- 7373 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15028/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15032/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 61:4257 - contained in read 288424 0- 6225 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15034/90584. Annotated with 34 overlaps. Scan reads to discard spanned repeats. discard region 2:4124 - contained in read 288482 0- 5476 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15035/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15046/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2634:6119 - contained in read 289909 0- 6119 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15052/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15054/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15055/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15057/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15058/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15059/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15062/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15071/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15080/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15081/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15087/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15095/90584. Annotated with 96 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3079:8651 - closest read 320453 ( +19) 3060:10334 ( +1683) (contained) saved region 3079:8651 - closest read 320457 ( +13) 3066:10404 ( +1753) (contained) saved region 3079:8651 - closest 5' read 320457 ( +13) 3066:10404 ( +1753) saved region 3079:8651 - closest 3' read 320453 ( +19) 3060:10334 ( +1683) search for confused edges: discard region 3079:8651 - no confusion in best edges Annotating repeats in reads for tig 15096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15103/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5182:9452 - closest 5' read 294635 ( +5182) 0:6373 ( -3079) saved region 5182:9452 - closest 3' read 374047 ( -423) 5605:10579 ( +1127) search for confused edges: discard region 5182:9452 - no confusion in best edges Annotating repeats in reads for tig 15104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15125/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6216:8237 - contained in read 296241 3692- 8478 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15133/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3521:5717 - contained in read 296650 0- 6355 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15135/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15149/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2629:5366 - contained in read 128807 102- 6300 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15153/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 2976:4244 - contained in read 297870 0- 6864 discard region 6724:8400 - contained in read 325914 2849- 8407 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15156/90584. Annotated with 110 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1248:3257 - closest read 192175 ( +495) 753:3257 ( +0) (contained) saved region 1248:3257 - closest 5' read 192175 ( +495) 753:3257 ( +0) saved region 1248:3257 - closest 3' read 192175 ( +495) 753:3257 ( +0) search for confused edges: discard region 1248:3257 - no confusion in best edges Annotating repeats in reads for tig 15158/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15163/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 392:2348 - contained in read 298820 0- 7390 discard region 5562:7394 - contained in read 298819 21- 7398 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15175/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1669:2854 - contained in read 300021 0- 5927 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15179/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15186/90584. Annotated with 95 overlaps. Scan reads to discard spanned repeats. discard region 2691:7742 - contained in read 301120 0- 8059 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15188/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15206/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2677:5321 - contained in read 160857 954- 5321 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15208/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15211/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15213/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15216/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15219/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2:1015 - contained in read 303665 0- 5920 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15232/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15234/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1322:2599 - closest 5' read 280522 ( +1272) 50:2583 ( -16) saved region 1322:2599 - closest 3' read 304430 ( -14) 1336:2773 ( +174) search for confused edges: tig 15234 read 304430 pos 1336-2773 IS confused by 5' edge to read 170266 - best edge read 280522 len 1247 erate 0.0281 score 1211.96 - alt edge len 1244 erate 0.0274 score 1209.91 - absdiff 2.04 percdiff 0.1689 tig 15234 read 304430 pos 1336-2773 IS confused by 5' edge to read 494164 - best edge read 280522 len 1247 erate 0.0281 score 1211.96 - alt edge len 1239 erate 0.0323 score 1198.98 - absdiff 12.98 percdiff 1.0767 tig 15234 read 304430 pos 1336-2773 IS confused by 5' edge to read 494472 - best edge read 280522 len 1247 erate 0.0281 score 1211.96 - alt edge len 1234 erate 0.0324 score 1194.02 - absdiff 17.94 percdiff 1.4914 tig 15234 read 304430 pos 1336-2773 IS confused by 5' edge to read 494474 - best edge read 280522 len 1247 erate 0.0281 score 1211.96 - alt edge len 1246 erate 0.0289 score 1209.99 - absdiff 1.97 percdiff 0.1626 saved region 1322:2599 - 4 best edges are potentially confused break tig 15234 into up to 2 pieces: 0 822 unique (length 822) 822 2773 repeat (length 1951) Creating Unitig 91361 Creating Unitig 91362 For tig 15234 unique region 0 822 - 0/ 2 reads repeat/unique - unitig 91361 created. For tig 15234 repeat region 822 2773 - 8/ 0 reads repeat/unique - unitig 91362 created. Annotating repeats in reads for tig 15235/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3290:3998 - contained in read 344941 2370- 4586 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15242/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15244/90584. Annotated with 33 overlaps. Scan reads to discard spanned repeats. discard region 245:5529 - contained in read 305142 0- 6611 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15245/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15246/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1056:1591 - closest read 325652 ( +71) 985:4247 ( +2656) (contained) saved region 1056:1591 - closest 5' read 325652 ( +71) 985:4247 ( +2656) saved region 1056:1591 - closest 3' read 325652 ( +71) 985:4247 ( +2656) search for confused edges: discard region 1056:1591 - no confusion in best edges Annotating repeats in reads for tig 15247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15248/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15258/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1232:5510 - contained in read 306537 9- 5510 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15260/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15261/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6247:149 - contained in read 73414 0- 6258 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15266/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 3:2604 - contained in read 307149 0- 4540 discard region 4543:3943 - contained in read 307149 0- 4540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15267/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15279/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15283/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15286/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 69:3265 - closest read 309004 ( +69) 0:3726 ( +461) (contained) saved region 69:3265 - closest read 309005 ( +58) 11:5681 ( +2416) (contained) saved region 69:3265 - closest read 309001 ( +49) 20:4885 ( +1620) (contained) saved region 69:3265 - closest read 309003 ( +29) 40:5906 ( +2641) (contained) saved region 69:3265 - closest read 308999 ( +28) 41:4574 ( +1309) (contained) saved region 69:3265 - closest read 309002 ( +20) 49:5896 ( +2631) (contained) saved region 69:3265 - closest read 309000 ( +5) 64:4717 ( +1452) (contained) saved region 69:3265 - closest 5' read 309003 ( +29) 40:5906 ( +2641) saved region 69:3265 - closest 3' read 309004 ( +69) 0:3726 ( +461) search for confused edges: discard region 69:3265 - no confusion in best edges Annotating repeats in reads for tig 15287/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15299/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15305/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15306/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15315/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4978:7376 - contained in read 299856 9- 7892 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15318/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15327/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15347/90584. Annotated with 92 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5674 - closest read 313640 ( +0) 0:5976 ( +302) (contained) saved region 0:5674 - closest 5' read 313640 ( +0) 0:5976 ( +302) saved region 0:5674 - closest 3' read 313640 ( +0) 0:5976 ( +302) search for confused edges: discard region 0:5674 - no confusion in best edges Annotating repeats in reads for tig 15348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15360/90584. Annotated with 526 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 418:6116 - closest read 425448 ( +229) 189:6116 ( +0) (contained) saved region 418:6116 - closest 5' read 425448 ( +229) 189:6116 ( +0) saved region 418:6116 - closest 3' read 425448 ( +229) 189:6116 ( +0) search for confused edges: discard region 418:6116 - no confusion in best edges Annotating repeats in reads for tig 15362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15367/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15370/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15376/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15384/90584. Annotated with 54 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1280:7400 - closest read 376832 ( +1280) 0:7446 ( +46) (contained) saved region 1280:7400 - closest 5' read 376832 ( +1280) 0:7446 ( +46) saved region 1280:7400 - closest 3' read 376832 ( +1280) 0:7446 ( +46) search for confused edges: discard region 1280:7400 - no confusion in best edges Annotating repeats in reads for tig 15387/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15389/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15394/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15396/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6035:6977 - contained in read 316772 0- 10020 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15397/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15400/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3428:10491 - closest read 316974 ( +3428) 0:10746 ( +255) (contained) saved region 3428:10491 - closest read 316975 ( +3416) 12:10945 ( +454) (contained) saved region 3428:10491 - closest read 316973 ( +240) 3188:11397 ( +906) (contained) saved region 3428:10491 - closest 5' read 316973 ( +240) 3188:11397 ( +906) saved region 3428:10491 - closest 3' read 316974 ( +3428) 0:10746 ( +255) search for confused edges: discard region 3428:10491 - no confusion in best edges Annotating repeats in reads for tig 15401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15402/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15408/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15411/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15418/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1509:7233 - closest 5' read 367953 ( +1509) 0:7206 ( -27) saved region 1509:7233 - closest 3' read 222557 ( -22) 1531:9740 ( +2507) search for confused edges: tig 15418 read 222557 pos 1531-9740 IS confused by 3' edge to read 214339 - best edge read 367953 len 5675 erate 0.0203 score 5559.80 - alt edge len 5028 erate 0.0207 score 4923.92 - absdiff 635.88 percdiff 12.1308 tig 15418 read 222557 pos 1531-9740 IS confused by 3' edge to read 214340 - best edge read 367953 len 5675 erate 0.0203 score 5559.80 - alt edge len 4986 erate 0.0213 score 4879.80 - absdiff 680.00 percdiff 13.0273 tig 15418 read 222557 pos 1531-9740 IS confused by 3' edge to read 214342 - best edge read 367953 len 5675 erate 0.0203 score 5559.80 - alt edge len 5029 erate 0.0195 score 4930.93 - absdiff 628.86 percdiff 11.9889 tig 15418 read 222557 pos 1531-9740 NOT confused by 3' edge to read 244989 - best edge read 367953 len 5675 erate 0.0203 score 5559.80 - alt edge len 2424 erate 0.0190 score 2377.94 - absdiff 3181.85 percdiff 80.1702 saved region 1509:7233 - 3 best edges are potentially confused break tig 15418 into up to 3 pieces: 0 1009 unique (length 1009) 1009 7733 repeat (length 6724) 7733 9749 unique (length 2016) Creating Unitig 91363 Creating Unitig 91364 Creating Unitig 91365 For tig 15418 unique region 0 1009 - 0/ 4 reads repeat/unique - unitig 91363 created. For tig 15418 repeat region 1009 7733 - 11/ 0 reads repeat/unique - unitig 91365 created. For tig 15418 unique region 7733 9749 - 0/ 7 reads repeat/unique - unitig 91364 created. Annotating repeats in reads for tig 15421/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15425/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 103:1145 - contained in read 488542 0- 2502 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15426/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15431/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15432/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3170:1939 - contained in read 319701 0- 2712 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15433/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15435/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15437/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:6172 - closest 5' read 320059 ( +0) 0:6122 ( -50) saved region 0:6172 - closest 3' read 320056 ( -2) 2:6183 ( +11) search for confused edges: tig 15437 read 320059 pos 0-6122 IS confused by 3' edge to read 320057 - best edge read 320056 len 6120 erate 0.0299 score 5937.01 - alt edge len 6096 erate 0.0243 score 5947.87 - absdiff 10.86 percdiff 0.1827 saved region 0:6172 - 1 best edges are potentially confused Annotating repeats in reads for tig 15438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15439/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15456/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15457/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1443:833 - contained in read 207521 0- 6547 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15464/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2687:6170 - contained in read 346418 0- 7071 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15469/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15476/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15481/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15484/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15486/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1738:4141 - closest 5' read 282370 ( +2) 1736:4134 ( -7) saved region 1738:4141 - closest 3' read 361148 ( -11) 1749:4197 ( +56) search for confused edges: discard region 1738:4141 - no confusion in best edges Annotating repeats in reads for tig 15487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15489/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15494/90584. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 3376:4915 - contained in read 374351 623- 6075 thickest edges to the repeat regions: saved region 496:3014 - closest read 529370 ( +495) 1:5066 ( +2052) (contained) saved region 496:3014 - closest 5' read 529370 ( +495) 1:5066 ( +2052) saved region 496:3014 - closest 3' read 529370 ( +495) 1:5066 ( +2052) search for confused edges: discard region 496:3014 - no confusion in best edges Annotating repeats in reads for tig 15495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15502/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2372:3221 - contained in read 384543 0- 6518 discard region 8302:5441 - contained in read 384543 0- 6518 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15509/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15510/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15517/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15519/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 602:2999 - contained in read 387105 0- 8688 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15526/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15528/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15534/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15535/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15536/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15540/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15542/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1215:4189 - contained in read 44119 325- 4617 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15546/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15547/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15551/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 1273:7566 - contained in read 294597 0- 8549 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15562/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5364:1575 - contained in read 357577 0- 7427 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15568/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 28:2651 - contained in read 212459 0- 3661 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15582/90584. Annotated with 115 overlaps. Scan reads to discard spanned repeats. discard region 2807:8150 - contained in read 329055 0- 8965 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15594/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 790:2984 - contained in read 329787 0- 5949 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15605/90584. Annotated with 127 overlaps. Scan reads to discard spanned repeats. discard region 3138:6115 - contained in read 215057 443- 6115 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15606/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15607/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15608/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15622/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 3024:5505 - contained in read 331691 2- 5505 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15626/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2766:3578 - closest read 83656 ( +2766) 0:3591 ( +13) (contained) saved region 2766:3578 - closest read 83655 ( +1764) 1002:3603 ( +25) (contained) saved region 2766:3578 - closest read 332031 ( +0) 2766:4372 ( +794) (contained) saved region 2766:3578 - closest 5' read 332031 ( +0) 2766:4372 ( +794) saved region 2766:3578 - closest 3' read 83656 ( +2766) 0:3591 ( +13) search for confused edges: discard region 2766:3578 - no confusion in best edges Annotating repeats in reads for tig 15631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15633/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15634/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6813:4378 - contained in read 332618 0- 6695 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15640/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8780:14087 - closest read 38175 ( +8780) 0:14112 ( +25) (contained) saved region 8780:14087 - closest 5' read 38175 ( +8780) 0:14112 ( +25) saved region 8780:14087 - closest 3' read 38175 ( +8780) 0:14112 ( +25) search for confused edges: discard region 8780:14087 - no confusion in best edges Annotating repeats in reads for tig 15644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15647/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4654:7716 - closest read 361904 ( +11) 4643:13189 ( +5473) (contained) saved region 4654:7716 - closest read 361902 ( +0) 4654:13246 ( +5530) (contained) saved region 4654:7716 - closest 5' read 361902 ( +0) 4654:13246 ( +5530) saved region 4654:7716 - closest 3' read 361904 ( +11) 4643:13189 ( +5473) search for confused edges: discard region 4654:7716 - no confusion in best edges Annotating repeats in reads for tig 15652/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15656/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:847 - contained in read 148686 0- 5572 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15659/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15664/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 15:3449 - contained in read 517707 0- 4740 discard region 9666:10818 - contained in read 335078 1228- 10836 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15668/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15669/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15679/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15680/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8919:10528 - contained in read 336334 26- 10572 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15681/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2475:3566 - contained in read 498558 0- 4516 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15703/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1289:1842 - contained in read 337757 0- 8809 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15706/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15723/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15739/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15740/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3441:4906 - contained in read 513759 0- 5845 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15751/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15759/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15768/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15773/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15779/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3857:6531 - closest read 343904 ( +3834) 23:6636 ( +105) (contained) saved region 3857:6531 - closest 5' read 343904 ( +3834) 23:6636 ( +105) saved region 3857:6531 - closest 3' read 343904 ( +3834) 23:6636 ( +105) search for confused edges: discard region 3857:6531 - no confusion in best edges Annotating repeats in reads for tig 15781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15783/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2301:5947 - contained in read 344076 0- 5947 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15801/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15804/90584. Annotated with 69 overlaps. Scan reads to discard spanned repeats. discard region 11055:12085 - contained in read 38544 5073- 15673 discard region 13568:13060 - contained in read 38544 5073- 15673 discard region 15452:17507 - contained in read 179359 11055- 19100 thickest edges to the repeat regions: saved region 4520:8485 - closest 5' read 345354 ( +4520) 0:7033 ( -1452) saved region 4520:8485 - closest 3' read 38544 ( -553) 5073:15673 ( +7188) search for confused edges: discard region 4520:8485 - no confusion in best edges Annotating repeats in reads for tig 15805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15818/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15821/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15824/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15841/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 10666:11204 - contained in read 36348 2- 11210 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15844/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15852/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4427:5349 - contained in read 348325 0- 5882 discard region 7462:9360 - contained in read 130789 4467- 11416 discard region 9328:11416 - contained in read 130789 4467- 11416 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15863/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15870/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 5841:8838 - contained in read 349599 77- 8838 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15874/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15876/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15880/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7829:10184 - closest 5' read 260125 ( +7800) 29:10145 ( -39) saved region 7829:10184 - closest 3' read 400450 ( -603) 8432:13000 ( +2816) search for confused edges: tig 15880 read 260125 pos 29-10145 IS confused by 5' edge to read 269372 - best edge read 400450 len 1713 erate 0.0261 score 1668.29 - alt edge len 1516 erate 0.0330 score 1465.97 - absdiff 202.32 percdiff 12.9101 saved region 7829:10184 - 1 best edges are potentially confused break tig 15880 into up to 3 pieces: 0 7329 unique (length 7329) 7329 10684 repeat (length 3355) 10684 13000 unique (length 2316) Creating Unitig 91366 Creating Unitig 91367 Creating Unitig 91368 For tig 15880 unique region 0 7329 - 0/ 3 reads repeat/unique - unitig 91366 created. For tig 15880 repeat region 7329 10684 - 2/ 0 reads repeat/unique - unitig 91367 created. For tig 15880 unique region 10684 13000 - 0/ 3 reads repeat/unique - unitig 91368 created. Annotating repeats in reads for tig 15881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15883/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15885/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15899/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15903/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15910/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15915/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15924/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15929/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15931/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15949/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15955/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15963/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15972/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 775:4179 - closest read 514521 ( +201) 574:7346 ( +3167) (contained) saved region 775:4179 - closest read 514522 ( +200) 575:7325 ( +3146) (contained) saved region 775:4179 - closest 5' read 514521 ( +201) 574:7346 ( +3167) saved region 775:4179 - closest 3' read 514521 ( +201) 574:7346 ( +3167) search for confused edges: discard region 775:4179 - no confusion in best edges Annotating repeats in reads for tig 15973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15974/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15979/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2002:7246 - contained in read 357430 0- 9199 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 15998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16001/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16003/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16012/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 2479:1068 - contained in read 359132 0- 5960 discard region 2917:1070 - contained in read 359132 0- 5960 discard region 3004:5583 - contained in read 208813 448- 6878 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16019/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3606:4880 - contained in read 463003 78- 4880 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16023/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 1056:6346 - contained in read 360391 0- 6346 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16024/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2988:3635 - contained in read 464099 0- 5919 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16031/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16033/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16037/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16050/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16052/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16065/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16069/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 782:0 - contained in read 264169 0- 5351 discard region 1139:8557 - contained in read 190560 343- 10851 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16074/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5995:3147 - contained in read 364112 0- 7902 discard region 7214:7902 - contained in read 364112 0- 7902 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16084/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1977:533 - contained in read 289354 0- 8578 discard region 3049:3730 - contained in read 289354 0- 8578 discard region 7550:8993 - contained in read 365145 3473- 10357 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16086/90584. Annotated with 70 overlaps. Scan reads to discard spanned repeats. discard region 0:5172 - contained in read 200501 0- 7394 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16095/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16099/90584. Annotated with 48 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4123:8655 - closest read 392074 ( +4062) 61:8660 ( +5) (contained) saved region 4123:8655 - closest read 465271 ( +5) 4118:8690 ( +35) (contained) saved region 4123:8655 - closest 5' read 465271 ( +5) 4118:8690 ( +35) saved region 4123:8655 - closest 3' read 392074 ( +4062) 61:8660 ( +5) search for confused edges: tig 16099 read 275326 pos 5343-12742 IS confused by 5' edge to read 45030 - best edge read 392075 len 3309 erate 0.0103 score 3274.92 - alt edge len 1549 erate 0.0260 score 1508.73 - absdiff 1766.19 percdiff 73.8429 tig 16099 read 275326 pos 5343-12742 IS confused by 5' edge to read 308306 - best edge read 392075 len 3309 erate 0.0103 score 3274.92 - alt edge len 2856 erate 0.0347 score 2756.90 - absdiff 518.02 percdiff 17.1763 tig 16099 read 275326 pos 5343-12742 IS confused by 5' edge to read 411914 - best edge read 392075 len 3309 erate 0.0103 score 3274.92 - alt edge len 3287 erate 0.0079 score 3261.03 - absdiff 13.88 percdiff 0.4249 saved region 4123:8655 - 3 best edges are potentially confused break tig 16099 into up to 3 pieces: 0 3623 unique (length 3623) 3623 9155 repeat (length 5532) 9155 13436 unique (length 4281) Creating Unitig 91369 Creating Unitig 91370 Creating Unitig 91371 For tig 16099 unique region 0 3623 - 0/ 2 reads repeat/unique - unitig 91369 created. For tig 16099 repeat region 3623 9155 - 13/ 0 reads repeat/unique - unitig 91370 created. For tig 16099 unique region 9155 13436 - 0/ 10 reads repeat/unique - unitig 91371 created. Annotating repeats in reads for tig 16100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16108/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:1924 - closest read 415943 ( +0) 0:2200 ( +276) (contained) saved region 0:1924 - closest 5' read 415943 ( +0) 0:2200 ( +276) saved region 0:1924 - closest 3' read 415943 ( +0) 0:2200 ( +276) search for confused edges: discard region 0:1924 - no confusion in best edges Annotating repeats in reads for tig 16110/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 2867:3831 - contained in read 366834 0- 6790 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16113/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5081:7649 - closest read 380451 ( +51) 5030:9888 ( +2239) (contained) saved region 5081:7649 - closest read 380450 ( +8) 5073:9889 ( +2240) (contained) saved region 5081:7649 - closest 5' read 380450 ( +8) 5073:9889 ( +2240) saved region 5081:7649 - closest 3' read 380451 ( +51) 5030:9888 ( +2239) search for confused edges: discard region 5081:7649 - no confusion in best edges Annotating repeats in reads for tig 16117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16129/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16138/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16146/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16147/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 7062:748 - contained in read 369863 0- 7031 discard region 7067:1931 - contained in read 369863 0- 7031 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16148/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16154/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16159/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 7322:9478 - contained in read 278436 2317- 9478 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16184/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16190/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16196/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16202/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16218/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16225/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16226/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16234/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16235/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16239/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1842:1324 - contained in read 376145 0- 9332 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16241/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 7683:5305 - contained in read 376217 0- 6273 discard region 7942:5358 - contained in read 376217 0- 6273 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16245/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16251/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16263/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16264/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 3563:4990 - contained in read 378161 0- 7574 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16271/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16279/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 4588:7412 - contained in read 115912 1244- 7437 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16312/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16314/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16318/90584. Annotated with 76 overlaps. Scan reads to discard spanned repeats. discard region 0:6586 - contained in read 141188 0- 7741 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16331/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1730:2628 - contained in read 158541 0- 6487 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16343/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16354/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5088:4059 - contained in read 384085 0- 6084 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16368/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16374/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1040:8 - contained in read 63889 0- 5446 discard region 1940:3092 - contained in read 63889 0- 5446 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16388/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16390/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:3259 - contained in read 386340 0- 7695 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16407/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16419/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16433/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6683:4546 - contained in read 389736 0- 6664 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16436/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:3501 - contained in read 522097 0- 5892 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16440/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 1194:4025 - contained in read 517421 0- 6452 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16446/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16455/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16468/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2149:6029 - contained in read 217723 318- 6029 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16470/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16475/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16497/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16499/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3076:0 - contained in read 394047 0- 5553 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16504/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 98:1464 - closest read 394345 ( +98) 0:1485 ( +21) (contained) saved region 98:1464 - closest read 394348 ( +97) 1:1469 ( +5) (contained) saved region 98:1464 - closest read 492117 ( +5) 93:1493 ( +29) (contained) saved region 98:1464 - closest read 355724 ( +4) 94:3245 ( +1781) (contained) saved region 98:1464 - closest 5' read 355724 ( +4) 94:3245 ( +1781) saved region 98:1464 - closest 3' read 394345 ( +98) 0:1485 ( +21) search for confused edges: discard region 98:1464 - no confusion in best edges Annotating repeats in reads for tig 16505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16517/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16520/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 0:4338 - contained in read 277710 0- 7678 discard region 5796:7603 - contained in read 204749 1929- 8900 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16527/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 431:2624 - closest read 492038 ( +412) 19:4792 ( +2168) (contained) saved region 431:2624 - closest read 437287 ( +398) 33:3431 ( +807) (contained) saved region 431:2624 - closest read 437291 ( +391) 40:3485 ( +861) (contained) saved region 431:2624 - closest 5' read 492038 ( +412) 19:4792 ( +2168) saved region 431:2624 - closest 3' read 492038 ( +412) 19:4792 ( +2168) search for confused edges: discard region 431:2624 - no confusion in best edges Annotating repeats in reads for tig 16528/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16532/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16538/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16540/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16545/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16551/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16599/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16610/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16616/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 541:0 - contained in read 402758 0- 6085 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16619/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:691 - contained in read 258404 0- 3557 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16625/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16626/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16638/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 4615:9331 - contained in read 403612 2236- 12398 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16673/90584. Annotated with 61 overlaps. Scan reads to discard spanned repeats. discard region 2173:4848 - contained in read 406403 5- 4848 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16682/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16684/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6934:7762 - contained in read 407319 0- 7775 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16685/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16691/90584. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 3499:8621 - contained in read 15684 14- 8621 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16705/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16717/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 35:10892 - closest read 339627 ( +12) 23:11015 ( +123) (contained) saved region 35:10892 - closest 5' read 339627 ( +12) 23:11015 ( +123) saved region 35:10892 - closest 3' read 339627 ( +12) 23:11015 ( +123) search for confused edges: discard region 35:10892 - no confusion in best edges Annotating repeats in reads for tig 16723/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16726/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16738/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16743/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16769/90584. Annotated with 49 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4906:10224 - closest 5' read 495928 ( +4245) 661:9950 ( -274) saved region 4906:10224 - closest 3' read 412365 ( -204) 5110:11301 ( +1077) search for confused edges: discard region 4906:10224 - no confusion in best edges Annotating repeats in reads for tig 16777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16779/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16782/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 200:2391 - contained in read 413205 0- 7037 discard region 6523:7509 - contained in read 402663 3587- 7549 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16796/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16823/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16824/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16829/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7:2946 - contained in read 416258 0- 6632 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16832/90584. Annotated with 167 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:9909 - closest 5' read 146019 ( +0) 0:8664 ( -1245) saved region 0:9909 - closest 3' read 287001 ( -1167) 1167:10157 ( +248) search for confused edges: discard region 0:9909 - no confusion in best edges Annotating repeats in reads for tig 16836/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16856/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16873/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16877/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16883/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 315:4857 - contained in read 419145 0- 6359 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16889/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4821:5411 - contained in read 419541 0- 7176 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16897/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16911/90584. Annotated with 97 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1493:9262 - closest 5' read 5852 ( +1214) 279:7783 ( -1479) saved region 1493:9262 - closest 3' read 38881 ( -3) 1496:11596 ( +2334) search for confused edges: tig 16911 read 5852 pos 279-7783 NOT confused by 5' edge to read 40715 - best edge read 38881 len 6287 erate 0.0285 score 6107.82 - alt edge len 3584 erate 0.0318 score 3470.03 - absdiff 2637.79 percdiff 55.0811 tig 16911 read 5852 pos 279-7783 NOT confused by 5' edge to read 40716 - best edge read 38881 len 6287 erate 0.0285 score 6107.82 - alt edge len 3569 erate 0.0320 score 3454.79 - absdiff 2653.03 percdiff 55.4875 discard region 1493:9262 - no confusion in best edges Annotating repeats in reads for tig 16917/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 13075:11568 - contained in read 456666 418- 13044 discard region 13075:11611 - contained in read 456666 418- 13044 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16921/90584. Annotated with 54 overlaps. Scan reads to discard spanned repeats. discard region 2710:5727 - contained in read 421966 10- 5727 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16922/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1302:739 - contained in read 467965 0- 5433 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16927/90584. Annotated with 1288 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:10571 - closest 5' read 306337 ( +0) 0:9385 ( -1186) saved region 0:10571 - closest 3' read 422377 ( -1556) 1556:10571 ( +0) search for confused edges: tig 16927 read 422377 pos 1556-10571 NOT confused by 5' edge to read 62033 - best edge read 306337 len 7829 erate 0.0247 score 7635.62 - alt edge len 1018 erate 0.0246 score 992.96 - absdiff 6642.67 percdiff 153.9689 tig 16927 read 422377 pos 1556-10571 NOT confused by 5' edge to read 79491 - best edge read 306337 len 7829 erate 0.0247 score 7635.62 - alt edge len 3875 erate 0.0445 score 3702.56 - absdiff 3933.06 percdiff 69.3773 tig 16927 read 422377 pos 1556-10571 NOT confused by 5' edge to read 81464 - best edge read 306337 len 7829 erate 0.0247 score 7635.62 - alt edge len 2121 erate 0.0415 score 2032.98 - absdiff 5602.65 percdiff 115.8936 tig 16927 read 422377 pos 1556-10571 NOT confused by 5' edge to read 408220 - best edge read 306337 len 7829 erate 0.0247 score 7635.62 - alt edge len 2028 erate 0.0202 score 1987.03 - absdiff 5648.59 percdiff 117.4018 discard region 0:10571 - no confusion in best edges Annotating repeats in reads for tig 16930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16951/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16952/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16984/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 16997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17001/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17018/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6295:9683 - contained in read 427475 198- 9683 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17033/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17038/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17041/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17042/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17044/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17051/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 892:4979 - closest 5' read 105514 ( +880) 12:4972 ( -7) saved region 892:4979 - closest 3' read 430940 ( -2731) 3623:4994 ( +15) search for confused edges: discard region 892:4979 - no confusion in best edges Annotating repeats in reads for tig 17053/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17058/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17067/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7628:8197 - contained in read 432288 2297- 8202 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17070/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1718:784 - contained in read 432468 0- 8212 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17071/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17073/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 12:1706 - contained in read 119631 0- 5684 discard region 3324:2265 - contained in read 119631 0- 5684 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17080/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17098/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 841:5893 - closest read 200683 ( +841) 0:5897 ( +4) (contained) saved region 841:5893 - closest read 434732 ( +0) 841:5919 ( +26) (contained) saved region 841:5893 - closest 5' read 434732 ( +0) 841:5919 ( +26) saved region 841:5893 - closest 3' read 200683 ( +841) 0:5897 ( +4) search for confused edges: discard region 841:5893 - no confusion in best edges Annotating repeats in reads for tig 17105/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17113/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17121/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17131/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3130:4309 - contained in read 437745 0- 4311 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17135/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17144/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17158/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17179/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17187/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12417:9703 - contained in read 389477 976- 10618 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17196/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17210/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1434:4542 - closest 5' read 197104 ( +1434) 0:3732 ( -810) saved region 1434:4542 - closest 3' read 18266 ( -51) 1485:6026 ( +1484) search for confused edges: tig 17210 read 18266 pos 1485-6026 IS confused by 5' edge to read 99939 - best edge read 197104 len 2247 erate 0.0273 score 2185.66 - alt edge len 1262 erate 0.0349 score 1217.96 - absdiff 967.70 percdiff 56.8631 saved region 1434:4542 - 1 best edges are potentially confused break tig 17210 into up to 3 pieces: 0 934 unique (length 934) 934 5042 repeat (length 4108) 5042 6040 unique (length 998) Creating Unitig 91372 Creating Unitig 91373 Creating Unitig 91374 For tig 17210 unique region 0 934 - 0/ 1 reads repeat/unique - unitig 91372 created. For tig 17210 repeat region 934 5042 - 5/ 0 reads repeat/unique - unitig 91373 created. For tig 17210 unique region 5042 6040 - 0/ 3 reads repeat/unique - unitig 91374 created. Annotating repeats in reads for tig 17211/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4143:6536 - contained in read 443911 19- 6536 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17213/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17225/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17235/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17245/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17248/90584. Annotated with 577 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5324 - closest read 442798 ( +0) 0:5503 ( +179) (contained) saved region 0:5324 - closest 5' read 442798 ( +0) 0:5503 ( +179) saved region 0:5324 - closest 3' read 442798 ( +0) 0:5503 ( +179) search for confused edges: discard region 0:5324 - no confusion in best edges Annotating repeats in reads for tig 17254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17266/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17278/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17288/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2973:7557 - contained in read 190546 2281- 7557 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17299/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17311/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17321/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17322/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17347/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7487:6973 - contained in read 76428 2828- 7491 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17349/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3230:5114 - contained in read 451992 0- 6850 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17351/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 0:723 - contained in read 452004 0- 3284 discard region 1540:965 - contained in read 452004 0- 3284 discard region 1683:3351 - contained in read 452005 403- 3394 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17366/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17372/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1194:1750 - contained in read 453462 0- 6201 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17383/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1299:3192 - contained in read 454203 0- 3769 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17391/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17397/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 1586:6990 - contained in read 455248 0- 7669 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17411/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17414/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17415/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17416/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17426/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17433/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17439/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17443/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5758:8805 - contained in read 16859 1759- 8822 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17455/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17456/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17460/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17473/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17485/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5790:7473 - contained in read 224222 1482- 7476 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17488/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17499/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17527/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4470:0 - contained in read 18379 0- 5595 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17532/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17547/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17553/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17566/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17573/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1329:2829 - contained in read 73442 737- 5331 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17585/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:5712 - closest read 258257 ( +0) 0:6184 ( +472) (contained) saved region 0:5712 - closest 5' read 258257 ( +0) 0:6184 ( +472) saved region 0:5712 - closest 3' read 258257 ( +0) 0:6184 ( +472) search for confused edges: discard region 0:5712 - no confusion in best edges Annotating repeats in reads for tig 17587/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3986:8368 - closest read 398836 ( +172) 3814:8383 ( +15) (contained) saved region 3986:8368 - closest 5' read 398836 ( +172) 3814:8383 ( +15) saved region 3986:8368 - closest 3' read 398836 ( +172) 3814:8383 ( +15) search for confused edges: discard region 3986:8368 - no confusion in best edges Annotating repeats in reads for tig 17588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17606/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2529:3249 - contained in read 468851 0- 6863 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17642/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17648/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17660/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3923:5582 - contained in read 471833 0- 6694 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17675/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 2908:3657 - contained in read 229617 0- 5447 discard region 3677:5200 - contained in read 473180 2908- 8843 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17691/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. discard region 0:1019 - contained in read 474192 0- 2682 discard region 6789:7713 - contained in read 168722 6055- 16215 discard region 10234:10909 - contained in read 168722 6055- 16215 thickest edges to the repeat regions: saved region 1453:5432 - closest read 528015 ( +517) 936:5438 ( +6) (contained) saved region 1453:5432 - closest 5' read 528015 ( +517) 936:5438 ( +6) saved region 1453:5432 - closest 3' read 528015 ( +517) 936:5438 ( +6) search for confused edges: tig 17691 read 474192 pos 0-2682 IS confused by 3' edge to read 166160 - best edge read 336740 len 1222 erate 0.0270 score 1189.01 - alt edge len 709 erate 0.0254 score 690.99 - absdiff 498.01 percdiff 52.9803 saved region 1453:5432 - 1 best edges are potentially confused break tig 17691 into up to 3 pieces: 0 953 unique (length 953) 953 5932 repeat (length 4979) 5932 16215 unique (length 10283) Creating Unitig 91375 Creating Unitig 91376 Creating Unitig 91377 For tig 17691 unique region 0 953 - 0/ 2 reads repeat/unique - unitig 91375 created. For tig 17691 repeat region 953 5932 - 3/ 0 reads repeat/unique - unitig 91377 created. For tig 17691 unique region 5932 16215 - 0/ 9 reads repeat/unique - unitig 91376 created. Annotating repeats in reads for tig 17694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17699/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17702/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9387:8549 - contained in read 475230 159- 10192 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17714/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17732/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 0:4271 - contained in read 476555 0- 5031 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17742/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17750/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. discard region 194:1339 - contained in read 415431 0- 14998 discard region 2788:5492 - contained in read 415431 0- 14998 discard region 10858:12466 - contained in read 415431 0- 14998 thickest edges to the repeat regions: saved region 12797:15885 - closest 5' read 320582 ( +3875) 8922:15055 ( -830) saved region 12797:15885 - closest 3' read 477734 ( -349) 13146:19449 ( +3564) search for confused edges: discard region 12797:15885 - no confusion in best edges Annotating repeats in reads for tig 17752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17761/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 30:4453 - contained in read 379665 0- 7443 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17788/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3407:4116 - contained in read 479704 0- 6458 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17789/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1249:3904 - contained in read 479766 0- 6563 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17825/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1785:5848 - contained in read 168264 142- 7154 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17854/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17858/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 9497:5340 - contained in read 484271 0- 9471 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17876/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2327:3 - contained in read 132602 0- 5324 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17887/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:2145 - contained in read 486532 0- 6860 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17900/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17922/90584. Annotated with 486 overlaps. Scan reads to discard spanned repeats. discard region 0:3354 - contained in read 71843 0- 5915 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17925/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17952/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 17995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18024/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5314:7883 - contained in read 88363 0- 12471 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18077/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18084/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18108/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18110/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 12:13541 - closest 5' read 511043 ( +12) 0:3768 ( -9773) saved region 12:13541 - closest 3' read 500727 ( -89) 101:13546 ( +5) search for confused edges: discard region 12:13541 - no confusion in best edges Annotating repeats in reads for tig 18116/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2647:7670 - contained in read 501251 78- 7730 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18139/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1664:5529 - closest read 502508 ( +1600) 64:5530 ( +1) (contained) saved region 1664:5529 - closest 5' read 502508 ( +1600) 64:5530 ( +1) saved region 1664:5529 - closest 3' read 502508 ( +1600) 64:5530 ( +1) search for confused edges: tig 18139 read 502509 pos 15-5525 IS confused by 5' edge to read 492526 - best edge read 78544 len 956 erate 0.0418 score 916.04 - alt edge len 1380 erate 0.0269 score 1342.88 - absdiff 426.84 percdiff 37.7915 saved region 1664:5529 - 1 best edges are potentially confused break tig 18139 into up to 3 pieces: 0 1164 unique (length 1164) 1164 6029 repeat (length 4865) 6029 10965 unique (length 4936) Creating Unitig 91378 Creating Unitig 91379 Creating Unitig 91380 For tig 18139 unique region 0 1164 - 0/ 3 reads repeat/unique - unitig 91378 created. For tig 18139 repeat region 1164 6029 - 25/ 0 reads repeat/unique - unitig 91379 created. For tig 18139 unique region 6029 10965 - 0/ 8 reads repeat/unique - unitig 91380 created. Annotating repeats in reads for tig 18157/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6026:1380 - contained in read 503544 0- 6014 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18184/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18246/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3078:2155 - contained in read 523637 0- 2701 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18253/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18254/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1264:5945 - contained in read 510965 303- 5945 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18278/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18279/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18280/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18325/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18338/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18356/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. discard region 5779:8237 - contained in read 526413 2788- 8734 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18374/90584. Annotated with 16 overlaps. Scan reads to discard spanned repeats. discard region 0:2769 - contained in read 383566 0- 5608 discard region 2904:4562 - contained in read 383566 0- 5608 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18411/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18507/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:2002 - contained in read 109630 0- 4117 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18528/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18539/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1323:3450 - contained in read 530399 0- 6409 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18564/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4342:2889 - contained in read 531824 0- 7593 discard region 6212:6779 - contained in read 531824 0- 7593 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18566/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18573/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18576/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18578/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18580/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1928:3313 - contained in read 511 0- 4096 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18585/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18586/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18589/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18600/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18607/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18608/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18614/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18622/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18625/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18627/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18632/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18633/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18642/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18645/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18647/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18648/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18649/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18652/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4421:5429 - contained in read 2496 296- 5886 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18653/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18654/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4776:8349 - contained in read 2594 52- 8787 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18655/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18658/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18660/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1038 - contained in read 423362 0- 5014 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18668/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18669/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18671/90584. Annotated with 15 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2941:5331 - closest 5' read 440455 ( +2931) 10:5307 ( -24) saved region 2941:5331 - closest 3' read 3412 ( -807) 3748:8358 ( +3027) search for confused edges: discard region 2941:5331 - no confusion in best edges Annotating repeats in reads for tig 18673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18674/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18679/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18681/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18682/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18684/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4762:8465 - closest read 456074 ( +4762) 0:8467 ( +2) (contained) saved region 4762:8465 - closest 5' read 456074 ( +4762) 0:8467 ( +2) saved region 4762:8465 - closest 3' read 456074 ( +4762) 0:8467 ( +2) search for confused edges: discard region 4762:8465 - no confusion in best edges Annotating repeats in reads for tig 18685/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18687/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18688/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18690/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18693/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18695/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18696/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18699/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18701/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18703/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18705/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18706/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18712/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18723/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18726/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18728/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18729/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18730/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18732/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1687:4120 - contained in read 5842 36- 4312 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18734/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18737/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18738/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18739/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18742/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 871:2262 - contained in read 6287 0- 6031 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18743/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18749/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18751/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18755/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18759/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18761/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 902:1931 - contained in read 7167 0- 7534 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18763/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18765/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3596:722 - contained in read 7255 0- 6445 discard region 3747:955 - contained in read 7255 0- 6445 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18768/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18774/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18784/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18785/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18787/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18789/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18796/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18797/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 310:2407 - contained in read 8347 0- 9228 thickest edges to the repeat regions: saved region 8654:9224 - closest read 8347 ( +8654) 0:9228 ( +4) (contained) saved region 8654:9224 - closest read 151350 ( +64) 8590:10814 ( +1590) (contained) saved region 8654:9224 - closest 5' read 151350 ( +64) 8590:10814 ( +1590) saved region 8654:9224 - closest 3' read 8347 ( +8654) 0:9228 ( +4) search for confused edges: discard region 8654:9224 - no confusion in best edges Annotating repeats in reads for tig 18798/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18799/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18800/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18801/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18804/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18808/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18811/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4094:7111 - contained in read 8621 0- 7745 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18816/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1382:4270 - contained in read 80370 329- 7577 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18817/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18821/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18823/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18830/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18835/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18836/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18837/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18841/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18844/90584. Annotated with 41 overlaps. Scan reads to discard spanned repeats. discard region 9271:8217 - contained in read 12062 2412- 10934 thickest edges to the repeat regions: saved region 2411:4866 - closest read 9851 ( +2411) 0:5305 ( +439) (contained) saved region 2411:4866 - closest 5' read 9851 ( +2411) 0:5305 ( +439) saved region 2411:4866 - closest 3' read 9851 ( +2411) 0:5305 ( +439) search for confused edges: discard region 2411:4866 - no confusion in best edges Annotating repeats in reads for tig 18845/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18847/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18854/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18856/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18860/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18861/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18863/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18870/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18871/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18872/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18875/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2330:5118 - closest 5' read 27570 ( +2330) 0:4614 ( -504) saved region 2330:5118 - closest 3' read 10635 ( -741) 3071:8703 ( +3585) search for confused edges: tig 18875 read 10635 pos 3071-8703 IS confused by 5' edge to read 229548 - best edge read 27570 len 1543 erate 0.0338 score 1490.85 - alt edge len 1153 erate 0.0279 score 1120.83 - absdiff 370.02 percdiff 28.3354 saved region 2330:5118 - 1 best edges are potentially confused break tig 18875 into up to 3 pieces: 0 1830 unique (length 1830) 1830 5618 repeat (length 3788) 5618 8703 unique (length 3085) Creating Unitig 91381 Creating Unitig 91382 For tig 18875 unique region 0 1830 - 0/ 1 reads repeat/unique - unitig 91381 created. For tig 18875 repeat region 1830 5618 - 0/ 0 repeat/unique reads - no new unitig created. For tig 18875 unique region 5618 8703 - 0/ 3 reads repeat/unique - unitig 91382 created. Annotating repeats in reads for tig 18876/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18877/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18879/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18880/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 3721:6364 - contained in read 344607 4- 6731 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18884/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18885/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18886/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18887/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7381:7916 - contained in read 10918 0- 7953 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18889/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18890/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18891/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18896/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18897/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3891:4934 - contained in read 11298 0- 6956 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18899/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18902/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18903/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18905/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2360:3511 - contained in read 81413 0- 7648 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18909/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18910/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18914/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18916/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4257:3477 - contained in read 11996 0- 4118 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18919/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18920/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18921/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18922/90584. Annotated with 40 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3292:9604 - closest read 12349 ( +3292) 0:9627 ( +23) (contained) saved region 3292:9604 - closest read 12350 ( +3292) 0:9621 ( +17) (contained) saved region 3292:9604 - closest 5' read 12349 ( +3292) 0:9627 ( +23) saved region 3292:9604 - closest 3' read 12349 ( +3292) 0:9627 ( +23) search for confused edges: discard region 3292:9604 - no confusion in best edges Annotating repeats in reads for tig 18923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18925/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18926/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4398:3230 - contained in read 12544 0- 6264 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18927/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18929/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18931/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18934/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18936/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18942/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18944/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18947/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18949/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18952/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 2937:3994 - contained in read 13992 0- 4666 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18954/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18959/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18961/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18962/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6045:2252 - contained in read 14477 0- 6655 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18965/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2018:3382 - contained in read 479456 43- 3388 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18966/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18974/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18976/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18977/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18984/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18986/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 1019:3682 - contained in read 15035 0- 6173 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 18999/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19000/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19001/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19003/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19005/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19008/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19011/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19015/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19020/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19026/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19031/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19033/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19035/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19037/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19038/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19042/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19044/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19047/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5152:1177 - contained in read 17215 0- 5806 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19052/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19054/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19056/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19058/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4806:7305 - contained in read 438472 0- 9905 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19062/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19063/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 2568:4694 - contained in read 18035 961- 4771 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19065/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19067/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4178:7264 - contained in read 262304 1790- 7266 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19071/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 85:4825 - contained in read 18463 0- 6861 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19077/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19081/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19083/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19087/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19088/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19092/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19095/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19099/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19103/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19105/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19108/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19113/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19115/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19118/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19121/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19129/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19134/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19139/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19146/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19148/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19150/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19152/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5172:7726 - contained in read 21242 186- 8053 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19154/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19167/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2732:4234 - contained in read 156873 1474- 8813 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19177/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 3881:4586 - contained in read 22023 0- 5263 discard region 6275:7581 - contained in read 311573 3121- 7921 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19186/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19188/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19190/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19193/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19200/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19201/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19203/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19208/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19211/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 889:0 - contained in read 23095 0- 4954 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19213/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19214/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19215/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19217/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19225/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19226/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19227/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19230/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19232/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19234/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19235/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19236/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:574 - contained in read 23817 0- 5369 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19239/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19242/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19243/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19245/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19252/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19253/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 441:2837 - contained in read 24350 0- 5617 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19256/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 5789:8304 - contained in read 24702 0- 9599 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19257/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19260/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19266/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19267/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19274/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19278/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19279/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19283/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19287/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19289/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19294/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19296/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19301/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19305/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19306/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19308/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3452:7945 - contained in read 98403 289- 7945 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19309/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 7716:8637 - contained in read 26931 4322- 12359 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19311/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19312/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19316/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19318/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19321/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19322/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19323/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19325/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19327/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19330/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19331/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19340/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19343/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19364/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19366/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19368/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19381/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19383/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19385/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19387/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19389/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19390/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19392/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19394/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19397/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19400/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19402/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2523:4087 - contained in read 30032 0- 7672 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19405/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19407/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19408/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19411/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19413/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19414/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19415/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19416/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19417/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19418/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19419/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19421/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19422/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19426/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19431/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19436/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19439/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19440/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19442/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7647:8613 - closest read 320941 ( +7647) 0:8624 ( +11) (contained) saved region 7647:8613 - closest 5' read 320941 ( +7647) 0:8624 ( +11) saved region 7647:8613 - closest 3' read 320941 ( +7647) 0:8624 ( +11) search for confused edges: discard region 7647:8613 - no confusion in best edges Annotating repeats in reads for tig 19443/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19445/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19446/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19451/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2717:1139 - contained in read 31923 0- 2470 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19453/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19455/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19457/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19458/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4649:6228 - contained in read 32119 0- 8475 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19459/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6038:1 - contained in read 32165 0- 7303 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19460/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19465/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19469/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19470/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19473/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19475/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19476/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19480/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19483/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19484/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19489/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 3776:6193 - contained in read 390452 432- 6310 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19490/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19499/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19500/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19504/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19507/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19508/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1157:3849 - contained in read 346443 0- 4537 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19509/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19511/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19513/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19515/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19517/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4741:3428 - contained in read 34101 0- 4751 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19525/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19535/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 741:4942 - contained in read 222587 0- 7410 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19536/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19540/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19541/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19542/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19546/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19556/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19566/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19573/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19579/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 388:1000 - contained in read 36346 0- 5432 discard region 1585:2358 - contained in read 36346 0- 5432 discard region 3041:5714 - contained in read 233219 1364- 6782 discard region 6150:6913 - contained in read 99593 3550- 8532 discard region 7200:8293 - contained in read 99593 3550- 8532 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19585/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19586/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19589/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19599/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19600/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19606/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19610/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19622/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6843:7586 - closest read 37824 ( +6828) 15:7602 ( +16) (contained) saved region 6843:7586 - closest read 219455 ( +26) 6817:8455 ( +869) (contained) saved region 6843:7586 - closest 5' read 219455 ( +26) 6817:8455 ( +869) saved region 6843:7586 - closest 3' read 37824 ( +6828) 15:7602 ( +16) search for confused edges: discard region 6843:7586 - no confusion in best edges Annotating repeats in reads for tig 19625/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19626/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19627/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19633/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19642/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19645/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19647/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2826:3817 - contained in read 38569 0- 6938 discard region 6986:5877 - contained in read 38569 0- 6938 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19649/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19652/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19653/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1223:2382 - contained in read 38950 0- 5327 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19655/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19658/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19663/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19669/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19674/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3803:1 - contained in read 40019 0- 7951 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19679/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19682/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19685/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19687/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19690/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19696/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19699/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19700/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1502:5553 - contained in read 41052 0- 8451 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19703/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19705/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19706/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19721/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19726/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19728/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. discard region 6481:8665 - contained in read 41863 0- 8665 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19729/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19733/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19734/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19737/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19743/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19750/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6826:9325 - closest 5' read 429445 ( +6788) 38:8738 ( -587) saved region 6826:9325 - closest 3' read 42743 ( -27) 6853:12183 ( +2858) search for confused edges: discard region 6826:9325 - no confusion in best edges Annotating repeats in reads for tig 19751/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19755/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19763/90584. Annotated with 2167 overlaps. Scan reads to discard spanned repeats. discard region 1990:3946 - contained in read 43389 9- 3946 thickest edges to the repeat regions: saved region 5:1966 - closest read 77731 ( +3) 2:1974 ( +8) (contained) saved region 5:1966 - closest read 3956 ( +3) 2:1973 ( +7) (contained) saved region 5:1966 - closest read 844 ( +3) 2:1972 ( +6) (contained) saved region 5:1966 - closest read 426759 ( +3) 2:1972 ( +6) (contained) saved region 5:1966 - closest read 22049 ( +3) 2:1972 ( +6) (contained) saved region 5:1966 - closest read 447237 ( +3) 2:1972 ( +6) (contained) saved region 5:1966 - closest read 447247 ( +3) 2:1972 ( +6) (contained) saved region 5:1966 - closest read 378662 ( +3) 2:1972 ( +6) (contained) saved region 5:1966 - closest read 60359 ( +3) 2:1972 ( +6) (contained) saved region 5:1966 - closest read 383736 ( +3) 2:1971 ( +5) (contained) saved region 5:1966 - closest read 159165 ( +3) 2:1971 ( +5) (contained) saved region 5:1966 - closest read 97359 ( +3) 2:1971 ( +5) (contained) saved region 5:1966 - closest read 847 ( +3) 2:1970 ( +4) (contained) saved region 5:1966 - closest read 8405 ( +3) 2:1970 ( +4) (contained) saved region 5:1966 - closest read 60365 ( +3) 2:1969 ( +3) (contained) saved region 5:1966 - closest read 339825 ( +3) 2:1969 ( +3) (contained) saved region 5:1966 - closest read 387534 ( +3) 2:1969 ( +3) (contained) saved region 5:1966 - closest read 92588 ( +3) 2:1969 ( +3) (contained) saved region 5:1966 - closest read 8407 ( +3) 2:1969 ( +3) (contained) saved region 5:1966 - closest read 159160 ( +3) 2:1968 ( +2) (contained) saved region 5:1966 - closest read 80022 ( +3) 2:1968 ( +2) (contained) saved region 5:1966 - closest read 77733 ( +3) 2:1968 ( +2) (contained) saved region 5:1966 - closest read 429160 ( +3) 2:1968 ( +2) (contained) saved region 5:1966 - closest read 97346 ( +3) 2:1967 ( +1) (contained) saved region 5:1966 - closest read 79258 ( +3) 2:1967 ( +1) (contained) saved region 5:1966 - closest read 447250 ( +2) 3:1973 ( +7) (contained) saved region 5:1966 - closest read 216943 ( +2) 3:1972 ( +6) (contained) saved region 5:1966 - closest read 69126 ( +2) 3:1972 ( +6) (contained) saved region 5:1966 - closest read 474818 ( +2) 3:1971 ( +5) (contained) saved region 5:1966 - closest read 85840 ( +2) 3:1971 ( +5) (contained) saved region 5:1966 - closest read 390884 ( +2) 3:1971 ( +5) (contained) saved region 5:1966 - closest read 424873 ( +2) 3:1970 ( +4) (contained) saved region 5:1966 - closest read 474080 ( +2) 3:1969 ( +3) (contained) saved region 5:1966 - closest read 323622 ( +2) 3:1969 ( +3) (contained) saved region 5:1966 - closest read 422820 ( +2) 3:1969 ( +3) (contained) saved region 5:1966 - closest read 39790 ( +2) 3:1969 ( +3) (contained) saved region 5:1966 - closest read 459643 ( +2) 3:1968 ( +2) (contained) saved region 5:1966 - closest read 85837 ( +2) 3:1967 ( +1) (contained) saved region 5:1966 - closest read 22047 ( +2) 3:1967 ( +1) (contained) saved region 5:1966 - closest read 79249 ( +1) 4:1977 ( +11) (contained) saved region 5:1966 - closest read 59755 ( +1) 4:1976 ( +10) (contained) saved region 5:1966 - closest read 73002 ( +1) 4:1976 ( +10) (contained) saved region 5:1966 - closest read 379826 ( +1) 4:1975 ( +9) (contained) saved region 5:1966 - closest read 79262 ( +1) 4:1975 ( +9) (contained) saved region 5:1966 - closest read 339833 ( +1) 4:1974 ( +8) (contained) saved region 5:1966 - closest read 411033 ( +1) 4:1974 ( +8) (contained) saved region 5:1966 - closest read 59907 ( +1) 4:1974 ( +8) (contained) saved region 5:1966 - closest read 77736 ( +1) 4:1974 ( +8) (contained) saved region 5:1966 - closest read 77732 ( +1) 4:1973 ( +7) (contained) saved region 5:1966 - closest read 459634 ( +1) 4:1973 ( +7) (contained) saved region 5:1966 - closest read 73003 ( +1) 4:1973 ( +7) (contained) saved region 5:1966 - closest read 206019 ( +1) 4:1973 ( +7) (contained) saved region 5:1966 - closest read 411027 ( +1) 4:1972 ( +6) (contained) saved region 5:1966 - closest read 443432 ( +1) 4:1972 ( +6) (contained) saved region 5:1966 - closest read 60360 ( +1) 4:1972 ( +6) (contained) saved region 5:1966 - closest read 79263 ( +1) 4:1972 ( +6) (contained) saved region 5:1966 - closest read 97351 ( +1) 4:1972 ( +6) (contained) saved region 5:1966 - closest read 392335 ( +1) 4:1972 ( +6) (contained) saved region 5:1966 - closest read 424886 ( +1) 4:1972 ( +6) (contained) saved region 5:1966 - closest read 447249 ( +1) 4:1971 ( +5) (contained) saved region 5:1966 - closest read 162605 ( +1) 4:1971 ( +5) (contained) saved region 5:1966 - closest read 441273 ( +1) 4:1971 ( +5) (contained) saved region 5:1966 - closest read 261439 ( +1) 4:1971 ( +5) (contained) saved region 5:1966 - closest read 359124 ( +1) 4:1970 ( +4) (contained) saved region 5:1966 - closest read 288371 ( +1) 4:1970 ( +4) (contained) saved region 5:1966 - closest read 96682 ( +1) 4:1970 ( +4) (contained) saved region 5:1966 - closest read 61054 ( +1) 4:1969 ( +3) (contained) saved region 5:1966 - closest read 159154 ( +1) 4:1969 ( +3) (contained) saved region 5:1966 - closest read 248353 ( +1) 4:1968 ( +2) (contained) saved region 5:1966 - closest read 159159 ( +1) 4:1968 ( +2) (contained) saved region 5:1966 - closest read 316212 ( +1) 4:1968 ( +2) (contained) saved region 5:1966 - closest read 51533 ( +1) 4:1968 ( +2) (contained) saved region 5:1966 - closest read 51781 ( +1) 4:1967 ( +1) (contained) saved region 5:1966 - closest read 8406 ( +1) 4:1967 ( +1) (contained) saved region 5:1966 - closest read 376513 ( +1) 4:1967 ( +1) (contained) saved region 5:1966 - closest read 288369 ( +1) 4:1967 ( +1) (contained) saved region 5:1966 - closest read 387535 ( +1) 4:1967 ( +1) (contained) saved region 5:1966 - closest read 261430 ( +1) 4:1966 ( +0) (contained) saved region 5:1966 - closest read 182256 ( +1) 4:1966 ( +0) (contained) saved region 5:1966 - closest read 15793 ( +1) 4:1966 ( +0) (contained) saved region 5:1966 - closest read 517648 ( +1) 4:1966 ( +0) (contained) saved region 5:1966 - closest read 502556 ( +1) 4:1966 ( +0) (contained) saved region 5:1966 - closest read 89727 ( +1) 4:1966 ( +0) (contained) saved region 5:1966 - closest read 309834 ( +0) 5:1980 ( +14) (contained) saved region 5:1966 - closest read 323624 ( +0) 5:1979 ( +13) (contained) saved region 5:1966 - closest read 51782 ( +0) 5:1979 ( +13) (contained) saved region 5:1966 - closest read 379829 ( +0) 5:1977 ( +11) (contained) saved region 5:1966 - closest read 390637 ( +0) 5:1977 ( +11) (contained) saved region 5:1966 - closest read 396191 ( +0) 5:1977 ( +11) (contained) saved region 5:1966 - closest read 59525 ( +0) 5:1977 ( +11) (contained) saved region 5:1966 - closest read 312477 ( +0) 5:1977 ( +11) (contained) saved region 5:1966 - closest read 182255 ( +0) 5:1977 ( +11) (contained) saved region 5:1966 - closest read 296901 ( +0) 5:1977 ( +11) (contained) saved region 5:1966 - closest read 398698 ( +0) 5:1977 ( +11) (contained) saved region 5:1966 - closest read 159168 ( +0) 5:1977 ( +11) (contained) saved region 5:1966 - closest read 96677 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 85831 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 162609 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 59903 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 37402 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 59911 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 206021 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 443433 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 77737 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 392484 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 61659 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 474816 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 339822 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 120826 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 13445 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 72209 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 128769 ( +0) 5:1976 ( +10) (contained) saved region 5:1966 - closest read 86197 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 274497 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 329263 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 342241 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 447240 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 237692 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 92590 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 8408 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 383729 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 383733 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 53556 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 8404 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 460187 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 216942 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 367489 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 79251 ( +0) 5:1975 ( +9) (contained) saved region 5:1966 - closest read 392486 ( +0) 5:1974 ( +8) (contained) saved region 5:1966 - closest read 378656 ( +0) 5:1974 ( +8) (contained) saved region 5:1966 - closest read 334341 ( +0) 5:1974 ( +8) (contained) saved region 5:1966 - closest read 392488 ( +0) 5:1974 ( +8) (contained) saved region 5:1966 - closest read 397513 ( +0) 5:1974 ( +8) (contained) saved region 5:1966 - closest read 424870 ( +0) 5:1974 ( +8) (contained) saved region 5:1966 - closest read 175680 ( +0) 5:1974 ( +8) (contained) saved region 5:1966 - closest read 182261 ( +0) 5:1974 ( +8) (contained) saved region 5:1966 - closest read 80023 ( +0) 5:1974 ( +8) (contained) saved region 5:1966 - closest read 367486 ( +0) 5:1974 ( +8) (contained) saved region 5:1966 - closest read 359123 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 159156 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 159167 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 441278 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 70035 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 398694 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 206011 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 39792 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 339831 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 162603 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 8416 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 33918 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 375320 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 399397 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 375327 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 367492 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 375316 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 51783 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 367490 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 127704 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 329268 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 457379 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 389176 ( +0) 5:1973 ( +7) (contained) saved region 5:1966 - closest read 206017 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 73005 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 53564 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 411026 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 312466 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 323617 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 309838 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 61055 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 261435 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 375328 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 415511 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 60357 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 87417 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 79266 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 411028 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 424890 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 376524 ( +0) 5:1972 ( +6) (contained) saved region 5:1966 - closest read 228861 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 137271 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 3754 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 39796 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 59921 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 39794 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 467131 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 79264 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 51539 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 424891 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 443441 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 431446 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 70043 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 128768 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 72215 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 404538 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 284739 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 86193 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 288368 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 467904 ( +0) 5:1971 ( +5) (contained) saved region 5:1966 - closest read 37404 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 379828 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 375323 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 528176 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 376518 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 379830 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 206027 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 206678 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 432280 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 3763 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 522001 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 39801 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 394596 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 85832 ( +0) 5:1970 ( +4) (contained) saved region 5:1966 - closest read 391907 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 51540 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 59756 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 162608 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 387543 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 448140 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 468414 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 96684 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 367491 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 422813 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 15792 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 96680 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 505872 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 206686 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 3950 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 3755 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 478525 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 465660 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 39797 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 312472 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 341776 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 10624 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 33920 ( +0) 5:1969 ( +3) (contained) saved region 5:1966 - closest read 3759 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 455343 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 162606 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 85835 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 387537 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 392490 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 325826 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 206025 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 401795 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 43381 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 339826 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 460433 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 334340 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 70024 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 410810 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 54268 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 460184 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 128330 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 430811 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 522005 ( +0) 5:1968 ( +2) (contained) saved region 5:1966 - closest read 22045 ( +0) 5:1967 ( +1) (contained) saved region 5:1966 - closest read 60364 ( +0) 5:1967 ( +1) (contained) saved region 5:1966 - closest read 478531 ( +0) 5:1967 ( +1) (contained) saved region 5:1966 - closest read 471651 ( +0) 5:1967 ( +1) (contained) saved region 5:1966 - closest read 316214 ( +0) 5:1967 ( +1) (contained) saved region 5:1966 - closest read 465646 ( +0) 5:1967 ( +1) (contained) saved region 5:1966 - closest read 51789 ( +0) 5:1967 ( +1) (contained) saved region 5:1966 - closest read 478533 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 206013 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 69399 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 510054 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 466295 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 455335 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 426762 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 312468 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 37401 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 471654 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 457365 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 159166 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 159169 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 390630 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 468417 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 457361 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 505859 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 447254 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 284746 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 175678 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 59917 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 206683 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest read 165470 ( +0) 5:1966 ( +0) (contained) saved region 5:1966 - closest 5' read 309834 ( +0) 5:1980 ( +14) saved region 5:1966 - closest 3' read 77731 ( +3) 2:1974 ( +8) search for confused edges: discard region 5:1966 - no confusion in best edges Annotating repeats in reads for tig 19765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19768/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19773/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19779/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19785/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19787/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19789/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19791/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19793/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1647:2486 - contained in read 44439 0- 6691 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19797/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1804:6816 - contained in read 44596 1158- 6838 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19799/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19801/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19804/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19808/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19811/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19817/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19818/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19824/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19830/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19832/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19835/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19836/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19837/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19841/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19844/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19846/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19847/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:4073 - contained in read 46847 0- 11237 discard region 10316:9084 - contained in read 46847 0- 11237 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19848/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19853/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19856/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19859/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2807:4102 - contained in read 47400 0- 6015 discard region 6039:4698 - contained in read 47400 0- 6015 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19863/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19866/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19871/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19872/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5051:4208 - contained in read 344577 0- 6935 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19873/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19874/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19875/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19876/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19877/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19879/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19880/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19881/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4081:2572 - contained in read 361189 0- 5164 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19885/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4109:4866 - closest read 120123 ( +0) 4109:8363 ( +3497) (contained) saved region 4109:4866 - closest 5' read 120123 ( +0) 4109:8363 ( +3497) saved region 4109:4866 - closest 3' read 120123 ( +0) 4109:8363 ( +3497) search for confused edges: discard region 4109:4866 - no confusion in best edges Annotating repeats in reads for tig 19887/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19889/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19890/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19894/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19896/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19897/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5079:3442 - contained in read 49191 0- 5025 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19899/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19900/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3620:4214 - closest read 358994 ( +3620) 0:4473 ( +259) (contained) saved region 3620:4214 - closest read 358993 ( +3311) 309:4510 ( +296) (contained) saved region 3620:4214 - closest read 49290 ( +0) 3620:4913 ( +699) (contained) saved region 3620:4214 - closest 5' read 49290 ( +0) 3620:4913 ( +699) saved region 3620:4214 - closest 3' read 358994 ( +3620) 0:4473 ( +259) search for confused edges: discard region 3620:4214 - no confusion in best edges Annotating repeats in reads for tig 19901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19903/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19910/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19912/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2480:3776 - contained in read 49933 0- 5925 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19916/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19919/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3853:4964 - contained in read 445718 40- 5527 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19921/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2358:3159 - contained in read 68136 0- 5324 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19922/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19924/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19925/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19928/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. discard region 5682:6395 - contained in read 50678 0- 6397 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19930/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5209:5913 - contained in read 50740 0- 5932 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19934/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19936/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19939/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19949/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4995:3985 - contained in read 51377 0- 7577 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19951/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19953/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1707:654 - contained in read 51456 0- 5980 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19955/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19959/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19963/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19966/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19974/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19976/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19977/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19982/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19984/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19986/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19997/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1581:2728 - contained in read 456866 539- 7769 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 19999/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20001/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20003/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20005/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20008/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20011/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20015/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20017/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4894:5584 - closest read 54097 ( +4887) 7:5587 ( +3) (contained) saved region 4894:5584 - closest read 54093 ( +4879) 15:5592 ( +8) (contained) saved region 4894:5584 - closest read 54095 ( +4875) 19:5592 ( +8) (contained) saved region 4894:5584 - closest 5' read 54093 ( +4879) 15:5592 ( +8) saved region 4894:5584 - closest 3' read 54097 ( +4887) 7:5587 ( +3) search for confused edges: discard region 4894:5584 - no confusion in best edges Annotating repeats in reads for tig 20018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20019/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20021/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20031/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20034/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3684:5034 - contained in read 370678 431- 6342 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20037/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20041/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20042/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20044/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 121:1135 - contained in read 314265 0- 3877 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20047/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20052/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20053/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20055/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6547:5654 - contained in read 527977 539- 6554 thickest edges to the repeat regions: saved region 235:1040 - closest read 55558 ( +235) 0:1077 ( +37) (contained) saved region 235:1040 - closest read 55561 ( +235) 0:1053 ( +13) (contained) saved region 235:1040 - closest 5' read 55558 ( +235) 0:1077 ( +37) saved region 235:1040 - closest 3' read 55558 ( +235) 0:1077 ( +37) search for confused edges: discard region 235:1040 - no confusion in best edges Annotating repeats in reads for tig 20056/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20058/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20059/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20061/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2683:5053 - contained in read 393104 0- 8361 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20071/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20077/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20079/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20080/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 1806:3702 - contained in read 56383 0- 6603 discard region 5146:6654 - contained in read 399201 1908- 8870 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20081/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20083/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20088/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20095/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20099/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20103/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20107/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:751 - contained in read 57015 0- 5797 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20110/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20112/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20113/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20115/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20129/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20131/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2797:2226 - contained in read 198813 0- 3383 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20135/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20138/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20140/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 7764:10615 - contained in read 122996 6987- 10823 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20144/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20145/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 849:1390 - closest read 58714 ( +849) 0:1577 ( +187) (contained) saved region 849:1390 - closest read 58713 ( +840) 9:1399 ( +9) (contained) saved region 849:1390 - closest read 58712 ( +839) 10:1394 ( +4) (contained) saved region 849:1390 - closest read 58715 ( +834) 15:1803 ( +413) (contained) saved region 849:1390 - closest 5' read 58715 ( +834) 15:1803 ( +413) saved region 849:1390 - closest 3' read 58714 ( +849) 0:1577 ( +187) search for confused edges: discard region 849:1390 - no confusion in best edges Annotating repeats in reads for tig 20147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20150/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20154/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4925:6120 - closest read 185323 ( +4925) 0:6248 ( +128) (contained) saved region 4925:6120 - closest read 185322 ( +4914) 11:6249 ( +129) (contained) saved region 4925:6120 - closest read 185324 ( +4910) 15:6242 ( +122) (contained) saved region 4925:6120 - closest read 185325 ( +3562) 1363:6257 ( +137) (contained) saved region 4925:6120 - closest 5' read 185325 ( +3562) 1363:6257 ( +137) saved region 4925:6120 - closest 3' read 185323 ( +4925) 0:6248 ( +128) search for confused edges: discard region 4925:6120 - no confusion in best edges Annotating repeats in reads for tig 20155/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20158/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20160/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20164/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 281:1258 - contained in read 59333 0- 3963 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20167/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20174/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20179/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20184/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20186/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20188/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20193/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20196/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20200/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20201/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20202/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20203/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20205/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20208/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20211/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20212/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20214/90584. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 1026:2034 - contained in read 242661 0- 4343 discard region 5775:8652 - contained in read 61485 1026- 8848 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20217/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20226/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20227/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20228/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 2739:3532 - contained in read 517819 0- 4416 thickest edges to the repeat regions: saved region 3790:4418 - closest read 122734 ( +345) 3445:7651 ( +3233) (contained) saved region 3790:4418 - closest read 61837 ( +333) 3457:13269 ( +8851) (contained) saved region 3790:4418 - closest read 61835 ( +326) 3464:13183 ( +8765) (contained) saved region 3790:4418 - closest read 61834 ( +317) 3473:13166 ( +8748) (contained) saved region 3790:4418 - closest read 61836 ( +309) 3481:13120 ( +8702) (contained) saved region 3790:4418 - closest read 122732 ( +0) 3790:5967 ( +1549) (contained) saved region 3790:4418 - closest 5' read 61837 ( +333) 3457:13269 ( +8851) saved region 3790:4418 - closest 3' read 122734 ( +345) 3445:7651 ( +3233) search for confused edges: discard region 3790:4418 - no confusion in best edges Annotating repeats in reads for tig 20230/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20232/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20234/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20235/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20237/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20243/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20244/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20245/90584. Annotated with 286 overlaps. Scan reads to discard spanned repeats. discard region 834:6543 - contained in read 62688 6- 6767 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20248/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20251/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 2669:3947 - contained in read 431123 757- 6484 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20256/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20262/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20266/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20271/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20276/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6523:4099 - contained in read 63930 0- 7972 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20278/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 698:5548 - closest 5' read 184207 ( +698) 0:3402 ( -2146) saved region 698:5548 - closest 3' read 64011 ( -1037) 1735:8809 ( +3261) search for confused edges: tig 20278 read 64011 pos 1735-8809 IS confused by 5' edge to read 166930 - best edge read 184207 len 1667 erate 0.0450 score 1591.98 - alt edge len 1621 erate 0.0426 score 1551.95 - absdiff 40.04 percdiff 2.5471 saved region 698:5548 - 1 best edges are potentially confused break tig 20278 into up to 3 pieces: 0 198 unique (length 198) 198 6048 repeat (length 5850) 6048 8809 unique (length 2761) Creating Unitig 91383 Creating Unitig 91384 Creating Unitig 91385 For tig 20278 unique region 0 198 - 0/ 1 reads repeat/unique - unitig 91383 created. For tig 20278 repeat region 198 6048 - 9/ 0 reads repeat/unique - unitig 91384 created. For tig 20278 unique region 6048 8809 - 0/ 3 reads repeat/unique - unitig 91385 created. Annotating repeats in reads for tig 20279/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20280/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20281/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20283/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20288/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20289/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20290/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 1310:4005 - contained in read 64453 0- 5973 discard region 4081:5314 - contained in read 64453 0- 5973 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20294/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20299/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20301/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 875:2117 - contained in read 480716 77- 2681 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20305/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20306/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20309/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20311/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1:2862 - closest read 65130 ( +1) 0:3157 ( +295) (contained) saved region 1:2862 - closest 5' read 65130 ( +1) 0:3157 ( +295) saved region 1:2862 - closest 3' read 65130 ( +1) 0:3157 ( +295) search for confused edges: discard region 1:2862 - no confusion in best edges Annotating repeats in reads for tig 20313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20315/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 1831:2576 - contained in read 65284 0- 4223 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20316/90584. Annotated with 145 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 246:5818 - closest 5' read 65466 ( +246) 0:3068 ( -2750) saved region 246:5818 - closest 3' read 351577 ( -5) 251:10444 ( +4626) search for confused edges: tig 20316 read 65466 pos 0-3068 IS confused by 3' edge to read 152415 - best edge read 351575 len 2740 erate 0.0227 score 2677.80 - alt edge len 2814 erate 0.0117 score 2781.08 - absdiff 103.27 percdiff 3.7837 saved region 246:5818 - 1 best edges are potentially confused break tig 20316 into up to 2 pieces: 0 6318 repeat (length 6318) 6318 10524 unique (length 4206) Creating Unitig 91386 Creating Unitig 91387 For tig 20316 repeat region 0 6318 - 6/ 0 reads repeat/unique - unitig 91386 created. For tig 20316 unique region 6318 10524 - 0/ 4 reads repeat/unique - unitig 91387 created. Annotating repeats in reads for tig 20317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20319/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20321/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20323/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20330/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20338/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20340/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20347/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20350/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20364/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20367/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2706:3811 - contained in read 67043 0- 6767 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20369/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20376/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20381/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 2767:4397 - contained in read 420031 23- 4397 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20383/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20386/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20387/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20390/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20391/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20393/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20397/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20402/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20407/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20408/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20411/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20413/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20414/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20415/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20416/90584. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 157:2352 - contained in read 68653 0- 6449 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20417/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20418/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20419/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20421/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20431/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20435/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20436/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20439/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20441/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 795:2406 - closest read 115516 ( +52) 743:2410 ( +4) (contained) saved region 795:2406 - closest 5' read 115516 ( +52) 743:2410 ( +4) saved region 795:2406 - closest 3' read 115516 ( +52) 743:2410 ( +4) search for confused edges: discard region 795:2406 - no confusion in best edges Annotating repeats in reads for tig 20443/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20446/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20450/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7567:9314 - contained in read 70127 5308- 9913 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20451/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20453/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20455/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20456/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20462/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4920:6771 - closest read 70619 ( +0) 4920:8391 ( +1620) (contained) saved region 4920:6771 - closest 5' read 70619 ( +0) 4920:8391 ( +1620) saved region 4920:6771 - closest 3' read 70619 ( +0) 4920:8391 ( +1620) search for confused edges: discard region 4920:6771 - no confusion in best edges Annotating repeats in reads for tig 20463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20465/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20469/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20470/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20475/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20477/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20480/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 2947:5363 - contained in read 71228 0- 6250 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20483/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20484/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20485/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20488/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20490/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20491/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20497/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20499/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20501/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20504/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20507/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20509/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20511/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20514/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20515/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20516/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20517/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20520/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12759:13788 - contained in read 455477 4909- 14650 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20526/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20530/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20532/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20534/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20536/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20538/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20540/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20541/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2626:3753 - contained in read 126868 275- 4669 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20542/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20543/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20546/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20551/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20553/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20573/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20576/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20579/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20587/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 575:1803 - contained in read 74864 0- 4650 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20589/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20599/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20600/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20606/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20607/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20608/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20610/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20614/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20622/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20625/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20626/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20628/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20633/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20639/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1908:4425 - contained in read 488656 61- 7735 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20642/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 1840:6626 - contained in read 77062 317- 8839 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20643/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1938:336 - contained in read 77306 0- 5671 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20645/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20647/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20652/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20653/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20656/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5977:6605 - closest read 77844 ( +23) 5954:7445 ( +840) (contained) saved region 5977:6605 - closest 5' read 77844 ( +23) 5954:7445 ( +840) saved region 5977:6605 - closest 3' read 77844 ( +23) 5954:7445 ( +840) search for confused edges: discard region 5977:6605 - no confusion in best edges Annotating repeats in reads for tig 20657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20659/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20663/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20669/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20681/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20683/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20685/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20687/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20690/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20695/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20700/90584. Annotated with 100 overlaps. Scan reads to discard spanned repeats. discard region 3342:5777 - contained in read 79636 0- 5777 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20701/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20703/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20706/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20712/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20726/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20728/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20729/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20730/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20733/90584. Annotated with 57 overlaps. Scan reads to discard spanned repeats. discard region 8311:13329 - contained in read 310752 7779- 13333 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20734/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 4607:4019 - contained in read 80524 0- 4592 discard region 6253:7621 - contained in read 69075 4027- 11438 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20737/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20738/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20739/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8251:2508 - contained in read 80701 0- 8548 discard region 8261:2564 - contained in read 80701 0- 8548 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20742/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20751/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20755/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20759/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20768/90584. Annotated with 499 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:10171 - closest 5' read 79491 ( +0) 0:7872 ( -2299) saved region 0:10171 - closest 3' read 81464 ( -5493) 5493:10667 ( +496) search for confused edges: tig 20768 read 81464 pos 5493-10667 IS confused by 5' edge to read 137517 - best edge read 79491 len 2379 erate 0.0355 score 2294.55 - alt edge len 792 erate 0.0370 score 762.70 - absdiff 1531.85 percdiff 100.2112 tig 20768 read 81464 pos 5493-10667 IS confused by 5' edge to read 422377 - best edge read 79491 len 2379 erate 0.0355 score 2294.55 - alt edge len 2130 erate 0.0415 score 2041.61 - absdiff 252.94 percdiff 11.6666 tig 20768 read 81464 pos 5493-10667 IS confused by 5' edge to read 516035 - best edge read 79491 len 2379 erate 0.0355 score 2294.55 - alt edge len 1826 erate 0.0334 score 1765.01 - absdiff 529.53 percdiff 26.0883 saved region 0:10171 - 3 best edges are potentially confused Annotating repeats in reads for tig 20770/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 872:4382 - contained in read 491599 0- 7470 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20772/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5001:1 - contained in read 81662 0- 6178 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20779/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20782/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20784/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20787/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20789/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5317:8935 - contained in read 82024 3604- 11930 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20791/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20796/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20797/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20798/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20801/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20808/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20809/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 3076:4735 - contained in read 82798 667- 7079 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20811/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20817/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20819/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20823/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20824/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20828/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2900:3758 - contained in read 427701 724- 3775 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20830/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20832/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20835/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4871:3416 - contained in read 83351 0- 4653 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20836/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1113:2979 - contained in read 83354 0- 5967 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20841/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20844/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20846/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20847/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20851/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20859/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20866/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20870/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20871/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20872/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20873/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20874/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20875/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20879/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20880/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20883/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20885/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20887/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20889/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20890/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20896/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20900/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 7339:6374 - contained in read 215812 1824- 9060 discard region 7702:8340 - contained in read 215812 1824- 9060 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20902/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20903/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20910/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20912/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20915/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20919/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20920/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20921/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20922/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20925/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3085:6025 - contained in read 86863 0- 9026 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20927/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20928/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5148:2497 - contained in read 114748 0- 6954 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20929/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20930/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2972:8328 - closest read 451417 ( +2) 2970:8512 ( +184) (contained) saved region 2972:8328 - closest 5' read 451417 ( +2) 2970:8512 ( +184) saved region 2972:8328 - closest 3' read 451417 ( +2) 2970:8512 ( +184) search for confused edges: tig 20930 read 87037 pos 3617-15942 IS confused by 5' edge to read 289681 - best edge read 151758 len 3817 erate 0.0134 score 3765.85 - alt edge len 2673 erate 0.0266 score 2601.90 - absdiff 1163.95 percdiff 36.5578 tig 20930 read 87037 pos 3617-15942 IS confused by 5' edge to read 289682 - best edge read 151758 len 3817 erate 0.0134 score 3765.85 - alt edge len 2521 erate 0.0259 score 2455.71 - absdiff 1310.15 percdiff 42.1163 saved region 2972:8328 - 2 best edges are potentially confused break tig 20930 into up to 3 pieces: 0 2472 unique (length 2472) 2472 8828 repeat (length 6356) 8828 15942 unique (length 7114) Creating Unitig 91388 Creating Unitig 91389 Creating Unitig 91390 For tig 20930 unique region 0 2472 - 0/ 2 reads repeat/unique - unitig 91388 created. For tig 20930 repeat region 2472 8828 - 2/ 0 reads repeat/unique - unitig 91389 created. For tig 20930 unique region 8828 15942 - 0/ 4 reads repeat/unique - unitig 91390 created. Annotating repeats in reads for tig 20931/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20934/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5191:5828 - closest read 87128 ( +1) 5190:8178 ( +2350) (contained) saved region 5191:5828 - closest read 87124 ( +0) 5191:8163 ( +2335) (contained) saved region 5191:5828 - closest 5' read 87128 ( +1) 5190:8178 ( +2350) saved region 5191:5828 - closest 3' read 87128 ( +1) 5190:8178 ( +2350) search for confused edges: discard region 5191:5828 - no confusion in best edges Annotating repeats in reads for tig 20935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20936/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20939/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20945/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6392:1700 - contained in read 87724 0- 6493 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20947/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20951/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20955/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20960/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20965/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20966/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20968/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2553:4253 - contained in read 517318 645- 6697 discard region 6697:4576 - contained in read 517318 645- 6697 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20974/90584. Annotated with 719 overlaps. Scan reads to discard spanned repeats. discard region 1660:7410 - contained in read 88640 129- 7461 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20976/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20977/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20978/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 264:2200 - closest 5' read 88707 ( +264) 0:1659 ( -541) saved region 264:2200 - closest 3' read 52 ( -4) 268:5650 ( +3450) search for confused edges: discard region 264:2200 - no confusion in best edges Annotating repeats in reads for tig 20979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20984/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20987/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20996/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 20999/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6179:6973 - contained in read 288145 0- 8151 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21001/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21005/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21007/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 3451:2197 - contained in read 89793 0- 3484 discard region 3451:2895 - contained in read 89793 0- 3484 discard region 5584:6371 - contained in read 213491 2538- 9650 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21008/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21009/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21015/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21021/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21024/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21026/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21032/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21033/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21034/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21037/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21038/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21041/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21042/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21047/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21050/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21053/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21055/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21057/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21059/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21062/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21071/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21077/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21080/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4046:5791 - contained in read 403714 0- 6323 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21081/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21083/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21084/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21086/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1652:0 - contained in read 93286 0- 6804 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21088/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21095/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21099/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21103/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21107/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21108/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21111/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 5475:6532 - contained in read 473117 0- 9702 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21112/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21115/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21116/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3599:6360 - contained in read 94542 0- 9127 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21118/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21120/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21121/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21129/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21134/90584. Annotated with 43 overlaps. Scan reads to discard spanned repeats. discard region 5331:7552 - contained in read 68057 2994- 8407 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21135/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21138/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21140/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21141/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3991:2855 - contained in read 200043 0- 5949 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21144/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21146/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21150/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21154/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21155/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21158/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 1965:3420 - contained in read 96614 0- 4222 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21160/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21161/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21167/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3681:5057 - contained in read 96880 0- 5586 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21171/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1773:3831 - contained in read 97014 0- 6579 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21173/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4275:5458 - contained in read 367526 3- 5458 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21174/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21179/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21189/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21190/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21196/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21200/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 9015:11011 - contained in read 98643 0- 12322 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21202/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21203/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4198:5836 - contained in read 525988 187- 7030 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21205/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21208/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21211/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21212/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21213/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21214/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21215/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21216/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21227/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21228/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 2018:4652 - contained in read 380317 0- 5756 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21232/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21234/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 917:3150 - closest read 248146 ( +1) 916:5268 ( +2118) (contained) saved region 917:3150 - closest read 304522 ( +0) 917:5287 ( +2137) (contained) saved region 917:3150 - closest 5' read 304522 ( +0) 917:5287 ( +2137) saved region 917:3150 - closest 3' read 248146 ( +1) 916:5268 ( +2118) search for confused edges: discard region 917:3150 - no confusion in best edges Annotating repeats in reads for tig 21235/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21237/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21239/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21242/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21243/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21248/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21252/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21255/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 560:2242 - closest read 364297 ( +372) 188:2246 ( +4) (contained) saved region 560:2242 - closest 5' read 364297 ( +372) 188:2246 ( +4) saved region 560:2242 - closest 3' read 364297 ( +372) 188:2246 ( +4) search for confused edges: discard region 560:2242 - no confusion in best edges Annotating repeats in reads for tig 21258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21262/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21265/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21271/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21274/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21279/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21281/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21283/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21286/90584. Annotated with 71 overlaps. Scan reads to discard spanned repeats. discard region 8844:10840 - contained in read 102450 5990- 14274 discard region 11405:12513 - contained in read 102450 5990- 14274 thickest edges to the repeat regions: saved region 5045:8772 - closest 5' read 526904 ( +4650) 395:7973 ( -799) saved region 5045:8772 - closest 3' read 102450 ( -945) 5990:14274 ( +5502) search for confused edges: tig 21286 read 102448 pos 6008-14279 IS confused by 5' edge to read 25606 - best edge read 526907 len 1831 erate 0.0299 score 1776.25 - alt edge len 577 erate 0.0332 score 557.84 - absdiff 1218.41 percdiff 104.4009 tig 21286 read 102448 pos 6008-14279 IS confused by 5' edge to read 80754 - best edge read 526907 len 1831 erate 0.0299 score 1776.25 - alt edge len 712 erate 0.0339 score 687.86 - absdiff 1088.39 percdiff 88.3392 tig 21286 read 102448 pos 6008-14279 IS confused by 5' edge to read 103470 - best edge read 526907 len 1831 erate 0.0299 score 1776.25 - alt edge len 559 erate 0.0287 score 542.96 - absdiff 1233.30 percdiff 106.3549 tig 21286 read 102448 pos 6008-14279 IS confused by 5' edge to read 103471 - best edge read 526907 len 1831 erate 0.0299 score 1776.25 - alt edge len 566 erate 0.0337 score 546.93 - absdiff 1229.33 percdiff 105.8315 tig 21286 read 102448 pos 6008-14279 IS confused by 5' edge to read 438308 - best edge read 526907 len 1831 erate 0.0299 score 1776.25 - alt edge len 606 erate 0.0251 score 590.79 - absdiff 1185.46 percdiff 100.1641 saved region 5045:8772 - 5 best edges are potentially confused break tig 21286 into up to 3 pieces: 0 4545 unique (length 4545) 4545 9272 repeat (length 4727) 9272 14279 unique (length 5007) Creating Unitig 91391 Creating Unitig 91392 For tig 21286 unique region 0 4545 - 0/ 2 reads repeat/unique - unitig 91391 created. For tig 21286 repeat region 4545 9272 - 0/ 0 repeat/unique reads - no new unitig created. For tig 21286 unique region 9272 14279 - 0/ 10 reads repeat/unique - unitig 91392 created. Annotating repeats in reads for tig 21287/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21288/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21289/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21294/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21296/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21305/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21308/90584. Annotated with 18 overlaps. Scan reads to discard spanned repeats. discard region 6661:10702 - contained in read 322926 4382- 12315 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21312/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21314/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21316/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21319/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21321/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21325/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21328/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 898:3458 - contained in read 103997 0- 5538 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21330/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21338/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21343/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21347/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21352/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 3908:7349 - contained in read 234408 0- 7970 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21362/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 3975:5531 - contained in read 425115 592- 10652 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21363/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3385:2602 - contained in read 179909 0- 6287 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21364/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21366/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21367/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21368/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21370/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21376/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21379/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21381/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21383/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21387/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21389/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3347:2651 - contained in read 182354 7- 6540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21390/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21391/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21397/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21398/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21402/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 296:2065 - contained in read 107281 0- 6426 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21404/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1852:4250 - contained in read 107366 0- 8396 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21405/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21407/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21408/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21410/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21414/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21415/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21416/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21417/90584. Annotated with 36 overlaps. Scan reads to discard spanned repeats. discard region 0:4978 - contained in read 200760 0- 8223 thickest edges to the repeat regions: saved region 7898:9154 - closest read 108101 ( +218) 7680:12944 ( +3790) (contained) saved region 7898:9154 - closest read 394252 ( +50) 7848:9162 ( +8) (contained) saved region 7898:9154 - closest 5' read 108101 ( +218) 7680:12944 ( +3790) saved region 7898:9154 - closest 3' read 108101 ( +218) 7680:12944 ( +3790) search for confused edges: discard region 7898:9154 - no confusion in best edges Annotating repeats in reads for tig 21418/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21421/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21422/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21426/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21433/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21435/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21436/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2374:3286 - contained in read 308837 202- 3298 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21437/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1820:4071 - contained in read 383381 0- 5883 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21440/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21443/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21445/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21446/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21450/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21451/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:1914 - contained in read 110033 0- 5636 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21456/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21460/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4159:2555 - contained in read 526834 0- 4989 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21469/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7046:5604 - contained in read 110662 2903- 7046 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21470/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21475/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21476/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21477/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21478/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21480/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21481/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21485/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21488/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21490/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21491/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21494/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21497/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21499/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21501/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21508/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21509/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21510/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21516/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21525/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21528/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21530/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21532/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21534/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21535/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21536/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21545/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21547/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21554/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 4520:5057 - closest read 114260 ( +91) 4429:7636 ( +2579) (contained) saved region 4520:5057 - closest 5' read 114260 ( +91) 4429:7636 ( +2579) saved region 4520:5057 - closest 3' read 114260 ( +91) 4429:7636 ( +2579) search for confused edges: discard region 4520:5057 - no confusion in best edges Annotating repeats in reads for tig 21556/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21566/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21573/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21578/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21579/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21583/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3587:5420 - contained in read 115568 0- 6937 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21596/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21600/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21608/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21622/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21623/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:4277 - contained in read 117647 0- 11524 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21626/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21627/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21628/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21645/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21647/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21653/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21655/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21658/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21659/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21663/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21668/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21669/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 273:2738 - contained in read 274065 0- 4094 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21671/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4889:6350 - contained in read 119673 1009- 6797 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21679/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21681/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21683/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21684/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21693/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21694/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:1797 - contained in read 120440 0- 5578 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21696/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21699/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21700/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21701/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21703/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21705/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21712/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2119:3641 - contained in read 121177 1284- 4080 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21714/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21721/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21733/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21734/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21737/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21740/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1724:3126 - contained in read 122820 0- 4748 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21742/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21743/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1636:6607 - closest 5' read 123024 ( +1636) 0:6568 ( -39) saved region 1636:6607 - closest 3' read 528044 ( -121) 1757:8728 ( +2121) search for confused edges: tig 21743 read 123026 pos 0-6555 IS confused by 3' edge to read 175080 - best edge read 528044 len 4798 erate 0.0286 score 4660.78 - alt edge len 4751 erate 0.0293 score 4611.80 - absdiff 48.98 percdiff 1.0565 tig 21743 read 123026 pos 0-6555 IS confused by 3' edge to read 491061 - best edge read 528044 len 4798 erate 0.0286 score 4660.78 - alt edge len 4747 erate 0.0257 score 4625.00 - absdiff 35.78 percdiff 0.7705 saved region 1636:6607 - 2 best edges are potentially confused break tig 21743 into up to 3 pieces: 0 1136 unique (length 1136) 1136 7107 repeat (length 5971) 7107 8728 unique (length 1621) Creating Unitig 91393 Creating Unitig 91394 Creating Unitig 91395 For tig 21743 unique region 0 1136 - 0/ 2 reads repeat/unique - unitig 91393 created. For tig 21743 repeat region 1136 7107 - 9/ 0 reads repeat/unique - unitig 91394 created. For tig 21743 unique region 7107 8728 - 0/ 5 reads repeat/unique - unitig 91395 created. Annotating repeats in reads for tig 21744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21749/90584. Annotated with 56 overlaps. Scan reads to discard spanned repeats. discard region 2577:4246 - contained in read 177659 0- 4954 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21759/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21768/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21774/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21775/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21784/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21787/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21789/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21796/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21797/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21799/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21801/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21817/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21818/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1852:6257 - contained in read 126912 330- 6453 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21821/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21823/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8398:7782 - contained in read 297020 2158- 8398 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21830/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21832/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21835/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21836/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21837/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21841/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21844/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21845/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21846/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21848/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21851/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21859/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21860/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21861/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21864/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5776:7675 - contained in read 454576 387- 7675 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21870/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21871/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21872/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 224:3734 - contained in read 129645 0- 6199 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21873/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21875/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21876/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21879/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21880/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21881/90584. Annotated with 32 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 115:4150 - closest read 130047 ( +115) 0:4232 ( +82) (contained) saved region 115:4150 - closest 5' read 130047 ( +115) 0:4232 ( +82) saved region 115:4150 - closest 3' read 130047 ( +115) 0:4232 ( +82) search for confused edges: discard region 115:4150 - no confusion in best edges Annotating repeats in reads for tig 21882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21885/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21887/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4681:5685 - contained in read 130462 0- 7175 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21891/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21892/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1579 - contained in read 130682 0- 3540 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21894/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21896/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21899/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21909/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21912/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21914/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21915/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21916/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21919/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21921/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21922/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21929/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21934/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21936/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21939/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21941/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 283:2278 - contained in read 132599 0- 3594 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21942/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 6843:9547 - contained in read 436786 0- 12278 discard region 11786:12314 - contained in read 132622 7345- 12470 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21944/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21946/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1206:2220 - contained in read 132752 0- 4971 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21947/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21951/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21953/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21954/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21960/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21961/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21965/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21966/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21976/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21983/90584. Annotated with 93 overlaps. Scan reads to discard spanned repeats. discard region 781:4886 - contained in read 134381 0- 5610 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21984/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21987/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21996/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 21999/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22000/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22009/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22020/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22021/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22024/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22026/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22028/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22031/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22034/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22038/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22041/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22045/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 572:2166 - contained in read 53619 0- 2832 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22047/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22054/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22056/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22057/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22059/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22071/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22079/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22080/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22081/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22083/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22087/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22088/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22092/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22095/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22096/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 4614:5592 - contained in read 139475 0- 6214 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22098/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5246:7197 - contained in read 496975 3582- 10222 discard region 7785:10222 - contained in read 496975 3582- 10222 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22099/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22103/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22107/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22108/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22110/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22112/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22113/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22115/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22118/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22121/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22130/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22148/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22152/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. discard region 263:4880 - contained in read 142375 0- 7992 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22155/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22160/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22167/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4534:5951 - contained in read 242177 57- 6100 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22174/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22175/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1450:4194 - contained in read 143512 0- 6188 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22179/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3240:84 - contained in read 143722 0- 5384 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22182/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2243:4984 - contained in read 306906 855- 5541 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22189/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22196/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22200/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22201/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22202/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22205/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22208/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22211/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22214/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22215/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22216/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22217/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22218/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22223/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22226/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22228/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22230/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22232/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22234/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22237/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22240/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1108:507 - contained in read 208246 0- 6696 discard region 1232:515 - contained in read 208246 0- 6696 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22244/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22248/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22251/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3141:1923 - contained in read 147242 0- 3072 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22252/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22253/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22257/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22262/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22263/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22265/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22266/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22267/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22271/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22272/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 812:4199 - closest read 417140 ( +812) 0:4273 ( +74) (contained) saved region 812:4199 - closest 5' read 417140 ( +812) 0:4273 ( +74) saved region 812:4199 - closest 3' read 417140 ( +812) 0:4273 ( +74) search for confused edges: discard region 812:4199 - no confusion in best edges Annotating repeats in reads for tig 22275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22283/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22288/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22292/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22296/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22301/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22311/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22319/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22322/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22325/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22327/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22330/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4787:3254 - contained in read 447146 877- 5169 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22331/90584. Annotated with 81 overlaps. Scan reads to discard spanned repeats. discard region 634:4020 - contained in read 193842 0- 6471 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22340/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22343/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22363/90584. Annotated with 157 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3098:11721 - closest 5' read 152415 ( +3098) 0:8655 ( -3066) saved region 3098:11721 - closest 3' read 453839 ( -2968) 6066:11721 ( +0) search for confused edges: tig 22363 read 152415 pos 0-8655 IS confused by 3' edge to read 65466 - best edge read 453839 len 2589 erate 0.0357 score 2496.57 - alt edge len 2814 erate 0.0117 score 2781.08 - absdiff 284.50 percdiff 10.7814 tig 22363 read 152415 pos 0-8655 NOT confused by 3' edge to read 320452 - best edge read 453839 len 2589 erate 0.0357 score 2496.57 - alt edge len 5546 erate 0.0097 score 5492.20 - absdiff 2995.63 percdiff 74.9960 saved region 3098:11721 - 1 best edges are potentially confused break tig 22363 into up to 2 pieces: 0 2598 unique (length 2598) 2598 11721 repeat (length 9123) Creating Unitig 91396 Creating Unitig 91397 For tig 22363 unique region 0 2598 - 0/ 3 reads repeat/unique - unitig 91396 created. For tig 22363 repeat region 2598 11721 - 17/ 0 reads repeat/unique - unitig 91397 created. Annotating repeats in reads for tig 22364/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22366/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22369/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22370/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22377/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 738:1990 - contained in read 162662 0- 7797 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22379/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22381/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22385/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22389/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22390/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22391/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22392/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5828:6365 - contained in read 320621 1972- 9555 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22393/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22394/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22397/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22400/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22405/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22411/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22416/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22417/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22418/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22422/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22435/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 3516:6472 - contained in read 155896 139- 6472 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22436/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22441/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22443/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22444/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5088:5856 - contained in read 156255 38- 5871 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22445/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3086:2477 - contained in read 156280 0- 4937 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22446/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22450/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22453/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7619:6453 - contained in read 371443 41- 9759 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22455/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22457/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22465/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22469/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22470/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22473/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22475/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22477/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22478/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22480/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22481/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22483/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22485/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22488/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22489/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22494/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22504/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22507/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22508/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22511/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22514/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22517/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22522/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22526/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22528/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22534/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22536/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6837:3519 - contained in read 159895 0- 7387 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22538/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22542/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2773:2052 - contained in read 160138 0- 2777 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22543/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22545/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22552/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5304:6031 - closest read 244049 ( +5304) 0:6035 ( +4) (contained) saved region 5304:6031 - closest read 244048 ( +5293) 11:6034 ( +3) (contained) saved region 5304:6031 - closest read 160504 ( +2) 5302:12441 ( +6410) (contained) saved region 5304:6031 - closest read 160502 ( +2) 5302:12417 ( +6386) (contained) saved region 5304:6031 - closest 5' read 160504 ( +2) 5302:12441 ( +6410) saved region 5304:6031 - closest 3' read 244049 ( +5304) 0:6035 ( +4) search for confused edges: discard region 5304:6031 - no confusion in best edges Annotating repeats in reads for tig 22553/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22556/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22566/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22572/90584. Annotated with 29 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3996:7433 - closest read 445975 ( +5) 3991:12122 ( +4689) (contained) saved region 3996:7433 - closest read 445976 ( +5) 3991:12041 ( +4608) (contained) saved region 3996:7433 - closest 5' read 445975 ( +5) 3991:12122 ( +4689) saved region 3996:7433 - closest 3' read 445975 ( +5) 3991:12122 ( +4689) search for confused edges: discard region 3996:7433 - no confusion in best edges Annotating repeats in reads for tig 22573/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3434:4802 - contained in read 333804 0- 6318 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22574/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3024:3953 - contained in read 161281 0- 4945 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22578/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22579/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22584/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22585/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22586/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22588/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6079:5578 - contained in read 162059 19- 6079 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22589/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22593/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3935:2888 - contained in read 359153 0- 4957 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22596/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22599/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22612/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3493:2380 - contained in read 163326 0- 5524 discard region 4976:5525 - contained in read 437956 3138- 5525 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22614/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4131:6484 - contained in read 474788 3535- 9406 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22619/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7832:9367 - closest read 311393 ( +7832) 0:9368 ( +1) (contained) saved region 7832:9367 - closest 5' read 311393 ( +7832) 0:9368 ( +1) saved region 7832:9367 - closest 3' read 311393 ( +7832) 0:9368 ( +1) search for confused edges: discard region 7832:9367 - no confusion in best edges Annotating repeats in reads for tig 22623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22628/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22632/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22633/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22635/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1776:3434 - closest read 164334 ( +1776) 0:3444 ( +10) (contained) saved region 1776:3434 - closest 5' read 164334 ( +1776) 0:3444 ( +10) saved region 1776:3434 - closest 3' read 164334 ( +1776) 0:3444 ( +10) search for confused edges: discard region 1776:3434 - no confusion in best edges Annotating repeats in reads for tig 22638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22642/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22643/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22645/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22647/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22649/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22652/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22653/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22663/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22665/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5885:7432 - contained in read 199045 0- 9966 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22668/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22674/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 3995:6768 - contained in read 166020 24- 6899 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22679/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22681/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22682/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22683/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22685/90584. Annotated with 22 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2118:6325 - closest read 166333 ( +2118) 0:6408 ( +83) (contained) saved region 2118:6325 - closest read 7371 ( +2096) 22:6420 ( +95) (contained) saved region 2118:6325 - closest read 166334 ( +388) 1730:6997 ( +672) (contained) saved region 2118:6325 - closest 5' read 166334 ( +388) 1730:6997 ( +672) saved region 2118:6325 - closest 3' read 166333 ( +2118) 0:6408 ( +83) search for confused edges: discard region 2118:6325 - no confusion in best edges Annotating repeats in reads for tig 22686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22688/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3130:4515 - contained in read 166432 0- 5373 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22693/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22699/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22700/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22701/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22706/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22709/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:2610 - closest read 167058 ( +0) 0:2663 ( +53) (contained) saved region 0:2610 - closest 5' read 167058 ( +0) 0:2663 ( +53) saved region 0:2610 - closest 3' read 167058 ( +0) 0:2663 ( +53) search for confused edges: discard region 0:2610 - no confusion in best edges Annotating repeats in reads for tig 22710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22723/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6005:4650 - contained in read 167532 0- 5930 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22728/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22729/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22730/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22734/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22736/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 3815:5721 - contained in read 168113 2- 5915 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22741/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1001:1992 - contained in read 252321 0- 5012 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22742/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22763/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22768/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22773/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22785/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22787/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22789/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22791/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22793/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22797/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22798/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22800/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22801/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22804/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22805/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22811/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22818/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22821/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22823/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22824/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22832/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22835/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5360:4318 - contained in read 504185 0- 9290 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22836/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 12142:13078 - contained in read 384475 4013- 13078 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22841/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22845/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22846/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22848/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22850/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22851/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22853/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22860/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22861/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22863/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22866/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22871/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22873/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22874/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22875/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22877/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22878/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5961:5398 - contained in read 194791 0- 5956 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22879/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22883/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22884/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22887/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22889/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22891/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22893/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3882:4689 - contained in read 175561 444- 6976 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22894/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22897/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22903/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22910/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22916/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22920/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 6269:7802 - contained in read 177133 1055- 7802 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22921/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22924/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22934/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1075:555 - contained in read 178005 0- 4131 discard region 1473:1989 - contained in read 178005 0- 4131 thickest edges to the repeat regions: saved region 2556:4120 - closest read 178005 ( +2556) 0:4131 ( +11) (contained) saved region 2556:4120 - closest read 164293 ( +0) 2556:4670 ( +550) (contained) saved region 2556:4120 - closest 5' read 164293 ( +0) 2556:4670 ( +550) saved region 2556:4120 - closest 3' read 178005 ( +2556) 0:4131 ( +11) search for confused edges: discard region 2556:4120 - no confusion in best edges Annotating repeats in reads for tig 22936/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22937/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4036:2110 - contained in read 178093 0- 5897 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22939/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22944/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6737:4560 - contained in read 178384 0- 7573 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22949/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22951/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22956/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 735:1337 - contained in read 178888 0- 6777 discard region 6201:6733 - contained in read 202122 1979- 7187 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22957/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1198:3607 - contained in read 178966 13- 3607 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22959/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22961/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22966/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22971/90584. Annotated with 17 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 118:1455 - closest 5' read 179354 ( +118) 0:1453 ( -2) saved region 118:1455 - closest 3' read 316933 ( -3) 121:1456 ( +1) search for confused edges: tig 22971 read 179354 pos 0-1453 IS confused by 3' edge to read 139402 - best edge read 355119 len 1313 erate 0.0359 score 1265.86 - alt edge len 1298 erate 0.0362 score 1251.01 - absdiff 14.85 percdiff 1.1801 tig 22971 read 179354 pos 0-1453 IS confused by 3' edge to read 373666 - best edge read 355119 len 1313 erate 0.0359 score 1265.86 - alt edge len 1334 erate 0.0218 score 1304.92 - absdiff 39.06 percdiff 3.0384 saved region 118:1455 - 2 best edges are potentially confused break tig 22971 into up to 2 pieces: 0 1955 repeat (length 1955) 1955 6586 unique (length 4631) Creating Unitig 91398 Creating Unitig 91399 For tig 22971 repeat region 0 1955 - 19/ 0 reads repeat/unique - unitig 91398 created. For tig 22971 unique region 1955 6586 - 0/ 1 reads repeat/unique - unitig 91399 created. Annotating repeats in reads for tig 22973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22981/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5472:1748 - contained in read 179892 0- 5510 discard region 5475:2172 - contained in read 179892 0- 5510 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22984/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22987/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 22998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23000/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23005/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 18:2155 - closest read 181017 ( +18) 0:2155 ( +0) (contained) saved region 18:2155 - closest read 311723 ( +12) 6:6195 ( +4040) (contained) saved region 18:2155 - closest 5' read 311723 ( +12) 6:6195 ( +4040) saved region 18:2155 - closest 3' read 181017 ( +18) 0:2155 ( +0) search for confused edges: discard region 18:2155 - no confusion in best edges Annotating repeats in reads for tig 23006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23010/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6345:4919 - contained in read 181161 0- 6075 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23019/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23020/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23021/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23026/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23029/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:4180 - closest read 400350 ( +0) 0:4533 ( +353) (contained) saved region 0:4180 - closest 5' read 400350 ( +0) 0:4533 ( +353) saved region 0:4180 - closest 3' read 400350 ( +0) 0:4533 ( +353) search for confused edges: discard region 0:4180 - no confusion in best edges Annotating repeats in reads for tig 23030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23034/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23037/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3561:849 - contained in read 182178 0- 5777 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23042/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23044/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23050/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23052/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 691:1638 - contained in read 256329 0- 3346 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23055/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23056/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23063/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23077/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23079/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23081/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 1991:3944 - contained in read 184690 0- 5308 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23083/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23084/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23087/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 1324:6416 - contained in read 430948 9- 6450 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23092/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23095/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23105/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23110/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23112/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23115/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23118/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1532:2448 - closest 5' read 185988 ( +1532) 0:2436 ( -12) saved region 1532:2448 - closest 3' read 473502 ( -9) 1541:4930 ( +2482) search for confused edges: discard region 1532:2448 - no confusion in best edges Annotating repeats in reads for tig 23119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23121/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23129/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23130/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23134/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23136/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5856:6755 - contained in read 420301 1897- 6755 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23140/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 1608:3434 - contained in read 187215 1080- 3566 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23146/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23148/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23154/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23155/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23158/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23164/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23167/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23169/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23174/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 197:1951 - contained in read 309695 0- 5932 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23186/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23190/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23203/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23205/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23208/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23211/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23212/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23214/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23217/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23227/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23228/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23230/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23239/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23242/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23244/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23248/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23260/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23263/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23271/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23274/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23279/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23281/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1256:53 - contained in read 192403 0- 2510 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23290/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5994:5317 - contained in read 192788 0- 6019 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23294/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23299/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23301/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23302/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23312/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23314/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23316/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23321/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23322/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23325/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23327/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23343/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23344/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1280:2381 - closest read 195347 ( +1280) 0:2576 ( +195) (contained) saved region 1280:2381 - closest read 323790 ( +101) 1179:8104 ( +5723) (contained) saved region 1280:2381 - closest read 521358 ( +0) 1280:2399 ( +18) (contained) saved region 1280:2381 - closest 5' read 323790 ( +101) 1179:8104 ( +5723) saved region 1280:2381 - closest 3' read 195347 ( +1280) 0:2576 ( +195) search for confused edges: discard region 1280:2381 - no confusion in best edges Annotating repeats in reads for tig 23345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23347/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23352/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23366/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23368/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23369/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23376/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23378/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2124:4579 - contained in read 196741 0- 5598 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23383/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23387/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23388/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23391/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23394/90584. Annotated with 81 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 310:5166 - closest 5' read 334403 ( +0) 310:5162 ( -4) saved region 310:5166 - closest 3' read 464931 ( -85) 395:5284 ( +118) search for confused edges: tig 23394 read 197393 pos 0-5106 NOT confused by 3' edge to read 51890 - best edge read 464931 len 4711 erate 0.0405 score 4520.20 - alt edge len 1041 erate 0.0318 score 1007.90 - absdiff 3512.31 percdiff 127.0711 tig 23394 read 197393 pos 0-5106 IS confused by 3' edge to read 154019 - best edge read 464931 len 4711 erate 0.0405 score 4520.20 - alt edge len 3106 erate 0.0423 score 2974.62 - absdiff 1545.59 percdiff 41.2442 tig 23394 read 197393 pos 0-5106 NOT confused by 3' edge to read 280544 - best edge read 464931 len 4711 erate 0.0405 score 4520.20 - alt edge len 1996 erate 0.0266 score 1942.91 - absdiff 2577.30 percdiff 79.7541 tig 23394 read 197393 pos 0-5106 NOT confused by 3' edge to read 413156 - best edge read 464931 len 4711 erate 0.0405 score 4520.20 - alt edge len 1382 erate 0.0217 score 1352.01 - absdiff 3168.19 percdiff 107.9046 tig 23394 read 197393 pos 0-5106 NOT confused by 3' edge to read 413160 - best edge read 464931 len 4711 erate 0.0405 score 4520.20 - alt edge len 1274 erate 0.0235 score 1244.06 - absdiff 3276.14 percdiff 113.6708 tig 23394 read 197393 pos 0-5106 NOT confused by 3' edge to read 413162 - best edge read 464931 len 4711 erate 0.0405 score 4520.20 - alt edge len 1309 erate 0.0283 score 1271.96 - absdiff 3248.25 percdiff 112.1602 tig 23394 read 197393 pos 0-5106 NOT confused by 3' edge to read 413163 - best edge read 464931 len 4711 erate 0.0405 score 4520.20 - alt edge len 1387 erate 0.0238 score 1353.99 - absdiff 3166.22 percdiff 107.8008 tig 23394 read 197393 pos 0-5106 NOT confused by 3' edge to read 442106 - best edge read 464931 len 4711 erate 0.0405 score 4520.20 - alt edge len 1090 erate 0.0416 score 1044.66 - absdiff 3475.55 percdiff 124.9105 tig 23394 read 197393 pos 0-5106 NOT confused by 3' edge to read 442108 - best edge read 464931 len 4711 erate 0.0405 score 4520.20 - alt edge len 1143 erate 0.0405 score 1096.71 - absdiff 3423.50 percdiff 121.8996 tig 23394 read 197393 pos 0-5106 NOT confused by 3' edge to read 498506 - best edge read 464931 len 4711 erate 0.0405 score 4520.20 - alt edge len 1752 erate 0.0447 score 1673.69 - absdiff 2846.52 percdiff 91.9138 saved region 310:5166 - 1 best edges are potentially confused Annotating repeats in reads for tig 23395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23402/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23405/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23407/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23411/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23414/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23419/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23422/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23426/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23430/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1042:2076 - closest read 377496 ( +17) 1025:6484 ( +4408) (contained) saved region 1042:2076 - closest 5' read 377496 ( +17) 1025:6484 ( +4408) saved region 1042:2076 - closest 3' read 377496 ( +17) 1025:6484 ( +4408) search for confused edges: discard region 1042:2076 - no confusion in best edges Annotating repeats in reads for tig 23432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23435/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23438/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3265:5286 - closest read 280719 ( +3265) 0:5291 ( +5) (contained) saved region 3265:5286 - closest read 280720 ( +2238) 1027:5297 ( +11) (contained) saved region 3265:5286 - closest 5' read 280720 ( +2238) 1027:5297 ( +11) saved region 3265:5286 - closest 3' read 280719 ( +3265) 0:5291 ( +5) search for confused edges: discard region 3265:5286 - no confusion in best edges Annotating repeats in reads for tig 23440/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1318:2870 - contained in read 312173 0- 4269 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23442/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23444/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2130:2859 - contained in read 377612 787- 6654 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23445/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2820:3712 - contained in read 446919 0- 9452 discard region 4728:6191 - contained in read 446919 0- 9452 discard region 9470:7337 - contained in read 446919 0- 9452 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23450/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23455/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23457/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23469/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23473/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23475/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23476/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23477/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23478/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23481/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23483/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 0:2039 - contained in read 201320 0- 4432 discard region 4420:2326 - contained in read 201320 0- 4432 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23490/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23491/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23501/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23504/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23509/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23513/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23515/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 5485:8216 - contained in read 394838 2086- 10349 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23516/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23517/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23525/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23528/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23530/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23535/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23538/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23543/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23545/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23546/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23547/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23553/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23556/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23566/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23568/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 123:2912 - contained in read 347537 0- 4045 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23584/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23586/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23599/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23606/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23608/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2459:417 - contained in read 529214 0- 6053 discard region 6070:3289 - contained in read 529214 0- 6053 discard region 8626:9174 - contained in read 206968 323- 15700 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23610/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23622/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23627/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23632/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23633/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23642/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23649/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23652/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23662/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 827:1811 - contained in read 10489 231- 6421 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23665/90584. Annotated with 290 overlaps. Scan reads to discard spanned repeats. discard region 1496:2661 - contained in read 198829 0- 5235 discard region 2769:4821 - contained in read 209544 1496- 5365 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23669/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23674/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23679/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23681/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23682/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23684/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4150:5216 - contained in read 210161 0- 7750 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23687/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23693/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 5460:6922 - contained in read 210399 15- 6962 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23695/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23699/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23700/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23701/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23703/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23705/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23723/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23728/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23729/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23737/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23740/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1431:4682 - closest 5' read 212638 ( +1431) 0:4254 ( -428) saved region 1431:4682 - closest 3' read 193655 ( -1782) 3213:6335 ( +1653) search for confused edges: discard region 1431:4682 - no confusion in best edges Annotating repeats in reads for tig 23741/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1170:32 - contained in read 212675 0- 1983 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23742/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23747/90584. Annotated with 25 overlaps. Scan reads to discard spanned repeats. discard region 0:826 - contained in read 212898 0- 18042 discard region 4695:4010 - contained in read 212898 0- 18042 discard region 8408:12819 - contained in read 212898 0- 18042 discard region 16036:17332 - contained in read 212898 0- 18042 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23748/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23755/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23759/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23774/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23782/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 4010:5154 - contained in read 343145 377- 8083 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23791/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23796/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23797/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23800/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23808/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23819/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23822/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3350:4329 - contained in read 274189 56- 5356 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23824/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23836/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2610:6999 - contained in read 216703 613- 7023 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23841/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4011:2922 - contained in read 216891 0- 5434 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23844/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23847/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23851/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23853/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4558:800 - contained in read 217236 0- 6982 discard region 4569:2826 - contained in read 217236 0- 6982 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23854/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9229:12385 - contained in read 529333 1706- 12385 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23856/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 9152:11285 - contained in read 292324 63- 11285 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23861/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23862/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5177:2962 - contained in read 409568 1487- 5177 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23863/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23873/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23874/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23875/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23881/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5729:6286 - closest read 312861 ( +5729) 0:6335 ( +49) (contained) saved region 5729:6286 - closest read 312867 ( +5711) 18:6290 ( +4) (contained) saved region 5729:6286 - closest read 312865 ( +5691) 38:6324 ( +38) (contained) saved region 5729:6286 - closest read 218264 ( +1) 5728:8422 ( +2136) (contained) saved region 5729:6286 - closest 5' read 218264 ( +1) 5728:8422 ( +2136) saved region 5729:6286 - closest 3' read 312861 ( +5729) 0:6335 ( +49) search for confused edges: discard region 5729:6286 - no confusion in best edges Annotating repeats in reads for tig 23886/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23887/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23889/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23890/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23893/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 12:995 - contained in read 218765 0- 3766 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23894/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23896/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23897/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23903/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23912/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23915/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23919/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23924/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23925/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23927/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23934/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23939/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23942/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23944/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23947/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23951/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23952/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23953/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23959/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3616:1616 - contained in read 222394 0- 9608 discard region 3620:2152 - contained in read 222394 0- 9608 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23961/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23974/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23982/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23984/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23985/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 5467:9478 - contained in read 511912 458- 9592 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23986/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23996/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 23998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24001/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24011/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24020/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24021/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24024/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24027/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:1487 - contained in read 225117 0- 2803 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24031/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24037/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24044/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24047/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24048/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 6571:8123 - closest read 460601 ( +0) 6571:8365 ( +242) (contained) saved region 6571:8123 - closest 5' read 460601 ( +0) 6571:8365 ( +242) saved region 6571:8123 - closest 3' read 460601 ( +0) 6571:8365 ( +242) search for confused edges: discard region 6571:8123 - no confusion in best edges Annotating repeats in reads for tig 24049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24050/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24054/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24055/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24058/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24062/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24063/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24065/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24080/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24083/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24092/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24093/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 217:735 - closest read 227714 ( +217) 0:1008 ( +273) (contained) saved region 217:735 - closest read 4940 ( +0) 217:2486 ( +1751) (contained) saved region 217:735 - closest 5' read 4940 ( +0) 217:2486 ( +1751) saved region 217:735 - closest 3' read 227714 ( +217) 0:1008 ( +273) search for confused edges: discard region 217:735 - no confusion in best edges Annotating repeats in reads for tig 24101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24107/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2364:3308 - contained in read 431630 0- 6730 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24110/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24112/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24115/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24118/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 6:763 - contained in read 228441 0- 1470 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24121/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24124/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24126/90584. Annotated with 38 overlaps. Scan reads to discard spanned repeats. discard region 1644:4320 - contained in read 2273 549- 6534 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24129/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24130/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24134/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24138/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24139/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24144/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24150/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24154/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24155/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24158/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 497:1126 - closest read 230117 ( +497) 0:1152 ( +26) (contained) saved region 497:1126 - closest read 367709 ( +0) 497:5547 ( +4421) (contained) saved region 497:1126 - closest 5' read 367709 ( +0) 497:5547 ( +4421) saved region 497:1126 - closest 3' read 230117 ( +497) 0:1152 ( +26) search for confused edges: discard region 497:1126 - no confusion in best edges Annotating repeats in reads for tig 24159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24160/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24161/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24167/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24174/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24180/90584. Annotated with 24 overlaps. Scan reads to discard spanned repeats. discard region 2351:5584 - contained in read 231055 2- 5584 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24184/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24188/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24200/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 4156:6337 - contained in read 231568 2547- 6337 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24201/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24202/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24203/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24212/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24214/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24215/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24217/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3928:5528 - contained in read 232242 0- 6243 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24237/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24243/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4377:754 - contained in read 233076 0- 6995 discard region 6113:5356 - contained in read 233076 0- 6995 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24245/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24251/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 5:4230 - contained in read 510920 0- 6571 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24252/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24253/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24256/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24262/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 233:1129 - contained in read 233768 0- 6102 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24263/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24266/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5780:4612 - contained in read 384280 0- 6147 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24276/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24289/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24294/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24296/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24304/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 3240:3763 - contained in read 354057 0- 6446 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24305/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24306/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24307/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24309/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24313/90584. Annotated with 21 overlaps. Scan reads to discard spanned repeats. discard region 612:5236 - contained in read 180453 74- 5236 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24315/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3075:4430 - contained in read 236017 0- 6262 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24321/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24323/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24330/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24334/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 0:602 - contained in read 236833 0- 7122 discard region 2805:6368 - contained in read 236833 0- 7122 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24340/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24343/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24345/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24347/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24355/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 3196:7977 - contained in read 253516 0- 8543 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24359/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24367/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24369/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24380/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5692:7111 - closest read 238710 ( +0) 5692:8565 ( +1454) (contained) saved region 5692:7111 - closest 5' read 238710 ( +0) 5692:8565 ( +1454) saved region 5692:7111 - closest 3' read 238710 ( +0) 5692:8565 ( +1454) search for confused edges: discard region 5692:7111 - no confusion in best edges Annotating repeats in reads for tig 24382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24385/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24391/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24408/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24409/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24411/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24414/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24415/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24417/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24419/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24425/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24426/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24431/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24433/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24435/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24441/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24443/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24450/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24451/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24455/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24463/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 8046:7397 - contained in read 241591 0- 7972 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24466/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 6091:6641 - contained in read 300398 5266- 11579 discard region 10732:11572 - contained in read 300398 5266- 11579 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24470/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24473/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1041:3323 - contained in read 242118 0- 6325 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24477/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24480/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24484/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4356:5883 - contained in read 342377 3821- 7808 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24488/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24490/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24491/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24494/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24499/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24507/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24508/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24513/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24516/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24523/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24525/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24536/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24538/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24542/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24545/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24548/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24551/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24553/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24556/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24576/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24584/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24589/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3232:2243 - contained in read 247101 0- 3189 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24590/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24592/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24596/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24600/90584. Annotated with 42 overlaps. Scan reads to discard spanned repeats. discard region 2374:7372 - contained in read 440590 0- 8553 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24603/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24606/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24608/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24610/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24614/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24626/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24635/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:717 - contained in read 8652 0- 5153 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24643/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24645/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24647/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24649/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24652/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24653/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24663/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24679/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 15:2202 - contained in read 250807 0- 4222 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24682/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4279:3348 - contained in read 251094 0- 6051 discard region 5901:4808 - contained in read 251094 0- 6051 discard region 6515:4828 - contained in read 251094 0- 6051 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24687/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24688/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24695/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24701/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24709/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1882:1324 - contained in read 252262 789- 1885 discard region 1885:1336 - contained in read 252262 789- 1885 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24721/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24723/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24724/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24737/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24738/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24742/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24749/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24751/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24753/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24780/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1956:1332 - contained in read 255843 0- 5079 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24782/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24784/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6188:8937 - contained in read 57183 3373- 8973 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24794/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24798/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24800/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24815/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 2571:1504 - contained in read 241222 358- 3715 discard region 2805:4031 - contained in read 363720 579- 5175 discard region 4585:5482 - contained in read 528623 707- 6310 thickest edges to the repeat regions: saved region 108:1334 - closest read 257884 ( +108) 0:1495 ( +161) (contained) saved region 108:1334 - closest 5' read 257884 ( +108) 0:1495 ( +161) saved region 108:1334 - closest 3' read 257884 ( +108) 0:1495 ( +161) search for confused edges: discard region 108:1334 - no confusion in best edges Annotating repeats in reads for tig 24816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24819/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24821/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24823/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24824/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 3693:9516 - contained in read 395728 0- 15594 discard region 13909:12526 - contained in read 395728 0- 15594 discard region 15528:12747 - contained in read 395728 0- 15594 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24830/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24832/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24845/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24847/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24851/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24853/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24856/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24859/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24861/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24863/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24871/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24885/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24887/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24891/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24895/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2081:2858 - contained in read 261250 596- 8807 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24896/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 9180:10767 - contained in read 5837 4666- 11969 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24902/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24909/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24910/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24920/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24921/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24924/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24925/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24944/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24948/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 42:657 - contained in read 45626 0- 6298 discard region 3515:2714 - contained in read 45626 0- 6298 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24951/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24952/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24954/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24961/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24963/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24985/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1713:2366 - contained in read 265103 0- 5130 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24992/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24996/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 24999/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25003/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25008/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25009/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25018/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25034/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25041/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25044/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25046/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4917:6292 - contained in read 142120 0- 6801 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25047/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25052/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25055/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25057/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25065/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25067/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25084/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25088/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25100/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 59:4115 - contained in read 269986 0- 6118 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25105/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25117/90584. Annotated with 624 overlaps. Scan reads to discard spanned repeats. discard region 1630:5108 - contained in read 270786 0- 6912 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25120/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25125/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25129/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25130/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25134/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25139/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25144/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25146/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25160/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25161/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25176/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2658:2130 - contained in read 213265 309- 2663 discard region 3606:4342 - contained in read 272955 1790- 7867 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25183/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2:562 - contained in read 273304 0- 5726 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25188/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25201/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25212/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25214/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25217/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25220/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25226/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25234/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25242/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25243/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25248/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25249/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5261:6635 - contained in read 245026 1344- 7194 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25250/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25252/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25265/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25267/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25271/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25274/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25276/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25278/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5456:4933 - contained in read 503893 0- 5452 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25279/90584. Annotated with 19 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3986:8607 - closest 5' read 531760 ( +3794) 192:8329 ( -278) saved region 3986:8607 - closest 3' read 277531 ( -2477) 6463:12683 ( +4076) search for confused edges: discard region 3986:8607 - no confusion in best edges Annotating repeats in reads for tig 25280/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25283/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25296/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25305/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25311/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25313/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25322/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25338/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25343/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25347/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25361/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25363/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25371/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5938:3920 - contained in read 280544 5- 5939 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25379/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25380/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25381/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25382/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2244:3317 - contained in read 281094 0- 5069 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25386/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25392/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3694:6586 - closest read 223212 ( +3694) 0:6712 ( +126) (contained) saved region 3694:6586 - closest read 281653 ( +1) 3693:10242 ( +3656) (contained) saved region 3694:6586 - closest 5' read 281653 ( +1) 3693:10242 ( +3656) saved region 3694:6586 - closest 3' read 223212 ( +3694) 0:6712 ( +126) search for confused edges: discard region 3694:6586 - no confusion in best edges Annotating repeats in reads for tig 25393/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25394/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25397/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 684:17 - contained in read 281917 0- 1878 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25400/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25407/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25410/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25413/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25417/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25419/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1941:3055 - contained in read 282687 0- 4024 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25422/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25433/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25435/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 0:1411 - contained in read 472788 0- 3803 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25439/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25440/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25449/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1481:2001 - closest read 529073 ( +0) 1481:10278 ( +8277) (contained) saved region 1481:2001 - closest 5' read 529073 ( +0) 1481:10278 ( +8277) saved region 1481:2001 - closest 3' read 529073 ( +0) 1481:10278 ( +8277) search for confused edges: discard region 1481:2001 - no confusion in best edges Annotating repeats in reads for tig 25450/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25451/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 687:115 - contained in read 283940 0- 4040 discard region 1303:4197 - contained in read 512929 115- 6547 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25455/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1254:3618 - contained in read 284021 73- 5217 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25456/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2776:357 - contained in read 284096 0- 6261 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25464/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25465/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25469/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25473/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25475/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25476/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8:3885 - closest read 285297 ( +8) 0:4122 ( +237) (contained) saved region 8:3885 - closest read 443285 ( +7) 1:3887 ( +2) (contained) saved region 8:3885 - closest 5' read 285297 ( +8) 0:4122 ( +237) saved region 8:3885 - closest 3' read 285297 ( +8) 0:4122 ( +237) search for confused edges: discard region 8:3885 - no confusion in best edges Annotating repeats in reads for tig 25479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25481/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25488/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25494/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1:3930 - contained in read 410878 0- 6228 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25500/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25502/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25507/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25508/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25510/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25511/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25514/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25516/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25517/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2807:3514 - contained in read 287068 0- 4816 discard region 3777:4797 - contained in read 260421 27- 4828 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25532/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25535/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25540/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25545/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25547/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25551/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25555/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5509:6278 - contained in read 288648 10- 6286 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25562/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 1507:6612 - contained in read 407517 101- 6695 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25569/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7194:5315 - contained in read 232842 0- 6543 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25573/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25574/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 46:2790 - contained in read 289278 0- 6556 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25600/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25601/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 433:3392 - closest 5' read 290448 ( +433) 0:3018 ( -374) saved region 433:3392 - closest 3' read 320120 ( -19) 452:6590 ( +3198) search for confused edges: tig 25601 read 290448 pos 0-3018 IS confused by 3' edge to read 248731 - best edge read 320120 len 2566 erate 0.0184 score 2518.79 - alt edge len 1332 erate 0.0158 score 1310.95 - absdiff 1207.83 percdiff 63.0764 saved region 433:3392 - 1 best edges are potentially confused break tig 25601 into up to 2 pieces: 0 3892 repeat (length 3892) 3892 6590 unique (length 2698) Creating Unitig 91400 Creating Unitig 91401 For tig 25601 repeat region 0 3892 - 5/ 0 reads repeat/unique - unitig 91400 created. For tig 25601 unique region 3892 6590 - 0/ 1 reads repeat/unique - unitig 91401 created. Annotating repeats in reads for tig 25602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25606/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25609/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25610/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25613/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25621/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25625/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25631/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25633/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25637/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25649/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 855:3812 - contained in read 292463 0- 7209 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25652/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25654/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3093:5615 - contained in read 292626 0- 5635 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25655/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25656/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25668/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25669/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25679/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25688/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25700/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25702/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25707/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25709/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25715/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25728/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25730/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 1811:6524 - contained in read 377965 66- 6524 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25737/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25739/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25742/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25755/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25759/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25773/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25779/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25784/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25793/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25797/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25799/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25800/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25801/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25808/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25810/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 7186:8208 - contained in read 299448 6263- 9259 thickest edges to the repeat regions: saved region 6413:7185 - closest read 371463 ( +6413) 0:7420 ( +235) (contained) saved region 6413:7185 - closest read 299448 ( +150) 6263:9259 ( +2074) (contained) saved region 6413:7185 - closest read 132737 ( +37) 6376:8059 ( +874) (contained) saved region 6413:7185 - closest read 183754 ( +2) 6411:8164 ( +979) (contained) saved region 6413:7185 - closest 5' read 299448 ( +150) 6263:9259 ( +2074) saved region 6413:7185 - closest 3' read 371463 ( +6413) 0:7420 ( +235) search for confused edges: discard region 6413:7185 - no confusion in best edges Annotating repeats in reads for tig 25815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25818/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25819/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25823/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25827/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25832/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25836/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25845/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25854/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25859/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25860/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25866/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25872/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:1459 - contained in read 302814 0- 6004 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25880/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25883/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25895/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25899/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3553:5645 - contained in read 304152 326- 5655 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25907/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25920/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25925/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25927/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25929/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25933/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25934/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 167:3967 - contained in read 305574 0- 9501 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25952/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25959/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25961/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25964/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25968/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25970/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. discard region 5895:8976 - contained in read 307023 3942- 8976 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25976/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25977/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2835:5494 - contained in read 18256 0- 7965 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25980/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25982/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25986/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25996/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 25999/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26000/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 995:3946 - contained in read 308441 0- 5524 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26002/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 5065:9056 - contained in read 497279 4279- 10180 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26006/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26009/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26011/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26020/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26021/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26035/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26041/90584. Annotated with 14 overlaps. Scan reads to discard spanned repeats. discard region 2148:3563 - contained in read 309641 0- 4878 discard region 4883:3892 - contained in read 309641 0- 4878 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26045/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26047/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26050/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26054/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4774:3726 - contained in read 273023 0- 8311 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26058/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26061/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26065/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3411:4228 - contained in read 310548 0- 5921 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26071/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26072/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26079/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26081/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26085/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26087/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26095/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26098/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:1047 - contained in read 311600 0- 6477 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26103/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26120/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26131/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26139/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26144/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26150/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26154/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26158/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26163/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26173/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26178/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26179/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26181/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4741:3124 - contained in read 314486 0- 7245 discard region 7224:3593 - contained in read 314486 0- 7245 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26185/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26187/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3129:4037 - contained in read 314650 0- 4660 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26189/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26196/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26202/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26203/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26206/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3155:5429 - contained in read 445415 151- 5550 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26211/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. discard region 2021:4167 - contained in read 315621 0- 6223 discard region 4979:6307 - contained in read 315623 249- 6328 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26213/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26216/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 11516:10880 - contained in read 315709 0- 11588 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26227/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26230/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26242/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26255/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26260/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26265/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26266/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26267/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26271/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26274/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26278/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26280/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26281/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26283/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:1903 - contained in read 27814 0- 7150 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26285/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1113:0 - contained in read 318490 0- 5411 discard region 1784:1200 - contained in read 318490 0- 5411 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26287/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26288/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26289/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26296/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26309/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26312/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26319/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26322/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 24:3766 - contained in read 330469 0- 7364 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26326/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26327/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26347/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1273:3525 - contained in read 320724 0- 10849 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26353/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26366/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26370/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26381/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26385/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26389/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26392/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26395/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26399/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7472:9666 - closest read 322398 ( +322) 7150:9860 ( +194) (contained) saved region 7472:9666 - closest 5' read 322398 ( +322) 7150:9860 ( +194) saved region 7472:9666 - closest 3' read 322398 ( +322) 7150:9860 ( +194) search for confused edges: discard region 7472:9666 - no confusion in best edges Annotating repeats in reads for tig 26401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26402/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26408/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26415/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26416/90584. Annotated with 36 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8875:11714 - closest 5' read 122247 ( +8875) 0:11691 ( -23) saved region 8875:11714 - closest 3' read 322955 ( -3) 8878:12409 ( +695) search for confused edges: tig 26416 read 322955 pos 8878-12409 IS confused by 5' edge to read 447478 - best edge read 122247 len 2813 erate 0.0267 score 2737.89 - alt edge len 1135 erate 0.0283 score 1102.88 - absdiff 1635.01 percdiff 85.1398 saved region 8875:11714 - 1 best edges are potentially confused break tig 26416 into up to 3 pieces: 0 8375 unique (length 8375) 8375 12214 repeat (length 3839) 12214 12409 unique (length 195) Creating Unitig 91402 Creating Unitig 91403 Creating Unitig 91404 For tig 26416 unique region 0 8375 - 0/ 3 reads repeat/unique - unitig 91402 created. For tig 26416 repeat region 8375 12214 - 3/ 0 reads repeat/unique - unitig 91404 created. For tig 26416 unique region 12214 12409 - 0/ 1 reads repeat/unique - unitig 91403 created. Annotating repeats in reads for tig 26417/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26429/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26431/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26433/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26435/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26438/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26440/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26441/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26443/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 8557:9430 - closest read 323893 ( +0) 8557:14768 ( +5338) (contained) saved region 8557:9430 - closest read 323891 ( +0) 8557:14762 ( +5332) (contained) saved region 8557:9430 - closest 5' read 323893 ( +0) 8557:14768 ( +5338) saved region 8557:9430 - closest 3' read 323893 ( +0) 8557:14768 ( +5338) search for confused edges: discard region 8557:9430 - no confusion in best edges Annotating repeats in reads for tig 26444/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26451/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26453/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26460/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26461/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 2808:3641 - contained in read 324775 0- 5233 discard region 4812:3830 - contained in read 324775 0- 5233 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26462/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26469/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26473/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26478/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26489/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26497/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26501/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26505/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26508/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26511/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26515/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26541/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26544/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26557/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26567/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26578/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26584/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26589/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26599/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26603/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1155:4337 - closest read 363491 ( +1155) 0:4348 ( +11) (contained) saved region 1155:4337 - closest read 330878 ( +61) 1094:4960 ( +623) (contained) saved region 1155:4337 - closest 5' read 330878 ( +61) 1094:4960 ( +623) saved region 1155:4337 - closest 3' read 363491 ( +1155) 0:4348 ( +11) search for confused edges: discard region 1155:4337 - no confusion in best edges Annotating repeats in reads for tig 26605/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26609/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2658:3280 - contained in read 335768 16- 3280 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26612/90584. Annotated with 57 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 0:8987 - closest 5' read 331237 ( +0) 0:7629 ( -1358) saved region 0:8987 - closest 3' read 331234 ( -152) 152:8987 ( +0) search for confused edges: discard region 0:8987 - no confusion in best edges Annotating repeats in reads for tig 26614/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26624/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26626/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26628/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26635/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26640/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26641/90584. Annotated with 8 overlaps. Scan reads to discard spanned repeats. discard region 1586:3481 - contained in read 332507 22- 6220 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26642/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26649/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26653/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26659/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26670/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26682/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26683/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26684/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26690/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26696/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26700/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26701/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26714/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26715/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 5353:8810 - contained in read 335597 0- 9853 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26729/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26730/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26733/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 3931:205 - contained in read 336145 0- 3916 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26735/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26738/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26743/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26747/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26749/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26763/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26767/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26773/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26774/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26798/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26800/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26809/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26811/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26818/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26831/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26835/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26836/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26844/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26847/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26848/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26850/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26852/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3567:5537 - contained in read 340295 8- 5537 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26856/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26858/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26878/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26885/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26887/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26888/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26891/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26894/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26896/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26902/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 806:223 - contained in read 342368 0- 6141 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26905/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26911/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26922/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26929/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26945/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26947/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26949/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26955/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26976/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:2091 - contained in read 422284 0- 7928 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26978/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26980/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1118:6945 - contained in read 488674 36- 11420 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 26998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27000/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 0:4401 - contained in read 345542 0- 6769 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27001/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27003/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27015/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27022/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27026/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27030/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27032/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27034/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27038/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27046/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27051/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4541:906 - contained in read 347580 0- 7168 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27055/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27058/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27069/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27071/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27079/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27082/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27087/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27101/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27103/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27105/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27107/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27114/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27118/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 29:4896 - closest read 348716 ( +25) 4:4939 ( +43) (contained) saved region 29:4896 - closest 5' read 348716 ( +25) 4:4939 ( +43) saved region 29:4896 - closest 3' read 348716 ( +25) 4:4939 ( +43) search for confused edges: discard region 29:4896 - no confusion in best edges Annotating repeats in reads for tig 27122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27127/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27135/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27139/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27140/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27151/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27186/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27189/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27193/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 83:3456 - contained in read 502422 0- 10996 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27197/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27201/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27202/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27204/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27207/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27210/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27211/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27214/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27217/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 260:1495 - contained in read 353938 0- 5667 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27226/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27228/90584. Annotated with 20 overlaps. Scan reads to discard spanned repeats. discard region 5782:9038 - contained in read 354401 0- 12142 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27234/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27236/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27238/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27242/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27243/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27246/90584. Annotated with 30 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1163:3080 - closest read 370860 ( +1163) 0:3211 ( +131) (contained) saved region 1163:3080 - closest 5' read 370860 ( +1163) 0:3211 ( +131) saved region 1163:3080 - closest 3' read 370860 ( +1163) 0:3211 ( +131) search for confused edges: discard region 1163:3080 - no confusion in best edges Annotating repeats in reads for tig 27247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27252/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27257/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27269/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27273/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27279/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27285/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27287/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27291/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27299/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27301/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27309/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27318/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27327/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27331/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27337/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27356/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27368/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27374/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27383/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27385/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27388/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27390/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27394/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27398/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27402/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27405/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27408/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 1976:4311 - contained in read 360529 0- 5740 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27410/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27414/90584. Annotated with 31 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2:3898 - closest read 360742 ( +2) 0:4158 ( +260) (contained) saved region 2:3898 - closest 5' read 360742 ( +2) 0:4158 ( +260) saved region 2:3898 - closest 3' read 360742 ( +2) 0:4158 ( +260) search for confused edges: discard region 2:3898 - no confusion in best edges Annotating repeats in reads for tig 27416/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27418/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27421/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27425/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1259:3461 - contained in read 361082 0- 6545 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27432/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2379:1163 - contained in read 361460 0- 4496 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27440/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27445/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27447/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27461/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27463/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27465/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 0:524 - contained in read 166160 0- 4027 discard region 849:3202 - contained in read 166160 0- 4027 thickest edges to the repeat regions: saved region 3405:4164 - closest read 362592 ( +0) 3405:4656 ( +492) (contained) saved region 3405:4164 - closest 5' read 362592 ( +0) 3405:4656 ( +492) saved region 3405:4164 - closest 3' read 362592 ( +0) 3405:4656 ( +492) search for confused edges: discard region 3405:4164 - no confusion in best edges Annotating repeats in reads for tig 27467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27474/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27477/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27481/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27483/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27486/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 2171:5348 - contained in read 363384 88- 6728 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27489/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27491/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27493/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27495/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27500/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27508/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27509/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27514/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 750:4508 - contained in read 364624 0- 5760 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27515/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27520/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27525/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27528/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27535/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27539/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27543/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27546/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27558/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5010:3646 - contained in read 366461 0- 5530 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27573/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27580/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27589/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27594/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27601/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27611/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27614/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27616/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27622/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27627/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27628/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27630/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27633/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27641/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27643/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27647/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27649/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27652/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27654/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27659/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27666/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27681/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27683/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27684/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27688/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 665:1811 - contained in read 371402 0- 5132 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27693/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27706/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27710/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27714/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27716/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27720/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27726/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27728/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27731/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27736/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27739/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27741/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27755/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27756/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27764/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27766/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27771/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27773/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27776/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27781/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27786/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27787/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27789/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27795/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27797/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27799/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27803/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27804/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27811/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27820/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27821/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27826/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27828/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27835/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27840/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27844/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27847/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27848/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27853/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 3482:4718 - contained in read 524891 9- 4718 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27859/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27862/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27869/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 2742:5809 - contained in read 399368 767- 6788 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27872/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27874/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27880/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27884/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27900/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27901/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27909/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27914/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27929/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27930/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27940/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27951/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27954/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27961/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27963/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27966/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27975/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27982/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27989/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27992/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 27999/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28009/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5667:4388 - contained in read 382825 0- 6247 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28015/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28019/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28024/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28027/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 0:4431 - contained in read 383339 0- 6865 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28038/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28039/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28041/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28055/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28056/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28057/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28062/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28064/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28078/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28083/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28084/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28087/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28092/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1520:2273 - contained in read 385576 0- 6241 discard region 4280:5645 - contained in read 385576 0- 6241 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28094/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28102/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28105/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28113/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28115/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28137/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28142/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28143/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28158/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28166/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28168/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28177/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28179/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28184/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28189/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28191/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3618:20 - contained in read 190076 0- 8926 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28192/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28194/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28195/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28198/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28209/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28212/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28215/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28216/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28226/90584. Annotated with 27 overlaps. Scan reads to discard spanned repeats. discard region 1106:5947 - contained in read 390483 74- 5947 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28231/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28233/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28237/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28243/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:3642 - contained in read 505895 0- 17973 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28249/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28252/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28254/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28257/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28261/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28263/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28264/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28265/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28268/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 4350:6018 - contained in read 391841 216- 6018 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28272/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 7125:7947 - contained in read 391931 5729- 8207 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28284/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28289/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28294/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28296/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28297/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28300/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 8420:7866 - contained in read 392746 0- 8414 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28304/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28318/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28321/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28325/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28329/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28332/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28334/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28341/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28355/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28358/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 257:2129 - contained in read 477764 0- 3773 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28359/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 715:4996 - contained in read 141315 0- 10798 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28371/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28387/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 2448:4219 - contained in read 396467 0- 5987 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28390/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28393/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28396/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28401/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28403/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28411/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28415/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28416/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28423/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28426/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28428/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28431/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28432/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28434/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28440/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28443/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28449/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28455/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28456/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28466/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28468/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4156:3065 - contained in read 399739 0- 7821 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28480/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28485/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28487/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28490/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28494/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28502/90584. Annotated with 37 overlaps. Scan reads to discard spanned repeats. discard region 0:1209 - contained in read 400576 0- 6551 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28504/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28506/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28514/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28524/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28531/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28535/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28537/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28541/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 58:962 - contained in read 402029 0- 5329 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28545/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28551/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28564/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28569/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28574/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28575/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28577/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28579/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28587/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28593/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28607/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28618/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28629/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28632/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28636/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28637/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4780:5613 - contained in read 47822 391- 5620 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28643/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28649/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28652/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28658/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28661/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28665/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28669/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28671/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28674/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28676/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28684/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 3299:6400 - closest read 362565 ( +0) 3299:9389 ( +2989) (contained) saved region 3299:6400 - closest 5' read 362565 ( +0) 3299:9389 ( +2989) saved region 3299:6400 - closest 3' read 362565 ( +0) 3299:9389 ( +2989) search for confused edges: discard region 3299:6400 - no confusion in best edges Annotating repeats in reads for tig 28687/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28690/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28698/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28700/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28703/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28704/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28706/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28708/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28711/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28719/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28723/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28725/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28729/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2808:7380 - closest read 407770 ( +210) 2598:7399 ( +19) (contained) saved region 2808:7380 - closest 5' read 407770 ( +210) 2598:7399 ( +19) saved region 2808:7380 - closest 3' read 407770 ( +210) 2598:7399 ( +19) search for confused edges: discard region 2808:7380 - no confusion in best edges Annotating repeats in reads for tig 28730/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3669:2518 - contained in read 407796 0- 6421 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28749/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28751/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28755/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28766/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1414:216 - contained in read 409140 0- 2961 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28773/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28793/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28800/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28802/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28811/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28814/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28819/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28822/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28830/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28833/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3643:5970 - contained in read 411672 3- 5970 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28843/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28846/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28855/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28860/90584. Annotated with 134 overlaps. Scan reads to discard spanned repeats. discard region 2088:3724 - contained in read 463707 0- 8964 thickest edges to the repeat regions: saved region 4430:9419 - closest 5' read 383564 ( +1288) 3142:9299 ( -120) saved region 4430:9419 - closest 3' read 412559 ( -251) 4681:11313 ( +1894) search for confused edges: tig 28860 read 412559 pos 4681-11313 NOT confused by 5' edge to read 168252 - best edge read 463707 len 4283 erate 0.0432 score 4097.97 - alt edge len 1955 erate 0.0379 score 1880.91 - absdiff 2217.07 percdiff 74.1634 tig 28860 read 412559 pos 4681-11313 IS confused by 5' edge to read 196244 - best edge read 463707 len 4283 erate 0.0432 score 4097.97 - alt edge len 2926 erate 0.0369 score 2818.03 - absdiff 1279.94 percdiff 37.0140 tig 28860 read 412559 pos 4681-11313 IS confused by 5' edge to read 362250 - best edge read 463707 len 4283 erate 0.0432 score 4097.97 - alt edge len 3134 erate 0.0364 score 3019.92 - absdiff 1078.05 percdiff 30.2913 saved region 4430:9419 - 2 best edges are potentially confused break tig 28860 into up to 3 pieces: 0 3930 unique (length 3930) 3930 9919 repeat (length 5989) 9919 11313 unique (length 1394) Creating Unitig 91405 Creating Unitig 91406 Creating Unitig 91407 For tig 28860 unique region 0 3930 - 0/ 10 reads repeat/unique - unitig 91405 created. For tig 28860 repeat region 3930 9919 - 2/ 0 reads repeat/unique - unitig 91407 created. For tig 28860 unique region 9919 11313 - 0/ 8 reads repeat/unique - unitig 91406 created. Annotating repeats in reads for tig 28861/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28869/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28882/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28884/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28886/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28890/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28896/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28900/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28906/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 5113:6742 - contained in read 414558 16- 6742 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28914/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28920/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28922/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28923/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28924/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28925/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28926/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28932/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28935/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28939/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28946/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28951/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28956/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28958/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28966/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 1195:7290 - closest read 416227 ( +1195) 0:7301 ( +11) (contained) saved region 1195:7290 - closest 5' read 416227 ( +1195) 0:7301 ( +11) saved region 1195:7290 - closest 3' read 416227 ( +1195) 0:7301 ( +11) search for confused edges: discard region 1195:7290 - no confusion in best edges Annotating repeats in reads for tig 28969/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28976/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28986/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28988/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 28998/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29000/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:2596 - contained in read 417341 0- 6776 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29002/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29005/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29009/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29014/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29016/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29018/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 4155:3516 - contained in read 417809 0- 4094 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29019/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 6178:9116 - contained in read 417832 4777- 9131 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29020/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29027/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29032/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29036/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29040/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29044/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29050/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29057/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29060/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29063/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29065/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29073/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29076/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29081/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29090/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29094/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 1186:6520 - contained in read 420995 0- 10929 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29096/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29100/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29107/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29109/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29116/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29121/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29123/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 7883:9582 - closest read 398178 ( +0) 7883:13004 ( +3422) (contained) saved region 7883:9582 - closest 5' read 398178 ( +0) 7883:13004 ( +3422) saved region 7883:9582 - closest 3' read 398178 ( +0) 7883:13004 ( +3422) search for confused edges: discard region 7883:9582 - no confusion in best edges Annotating repeats in reads for tig 29128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29138/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29140/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29144/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2:2038 - contained in read 422484 0- 9644 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29146/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29149/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29154/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29165/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29176/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29181/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29182/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29183/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29188/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29190/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29193/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29199/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29202/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29203/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29206/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29211/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29217/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29223/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29229/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29232/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29234/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29235/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29237/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29244/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29259/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29262/90584. Annotated with 48 overlaps. Scan reads to discard spanned repeats. discard region 98:2492 - contained in read 204373 0- 4025 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29266/90584. Annotated with 7 overlaps. Scan reads to discard spanned repeats. discard region 5245:5839 - contained in read 427025 0- 7704 discard region 12484:14325 - contained in read 79653 5696- 15584 discard region 14510:15104 - contained in read 79653 5696- 15584 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29275/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29277/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 214:3441 - contained in read 427371 0- 6626 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29279/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29283/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29290/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29293/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29300/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29305/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29311/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29312/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29315/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 24:2299 - contained in read 428491 0- 6899 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29320/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29322/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29327/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29328/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29332/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1639:2869 - contained in read 352575 0- 3979 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29335/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29339/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29346/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29357/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29360/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29363/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29375/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29378/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29383/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29389/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29392/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29394/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29412/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29419/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29422/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29424/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29427/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29430/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29436/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29441/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29454/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29455/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29458/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29470/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29471/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29475/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29476/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29479/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29483/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29486/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29501/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29503/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29505/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 28:8808 - closest 5' read 292494 ( +28) 0:7568 ( -1240) saved region 28:8808 - closest 3' read 435282 ( -33) 61:10686 ( +1878) search for confused edges: discard region 28:8808 - no confusion in best edges Annotating repeats in reads for tig 29507/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29510/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29511/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1788:2329 - contained in read 435509 0- 7345 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29513/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29519/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29526/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29533/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29536/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1970:4409 - contained in read 436596 0- 6448 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29546/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29547/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29552/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29553/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29558/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29559/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29565/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29571/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29576/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29585/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29587/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 5845:6797 - closest read 438248 ( +66) 5779:13120 ( +6323) (contained) saved region 5845:6797 - closest read 438250 ( +65) 5780:13113 ( +6316) (contained) saved region 5845:6797 - closest read 83850 ( +55) 5790:11664 ( +4867) (contained) saved region 5845:6797 - closest read 438247 ( +35) 5810:12781 ( +5984) (contained) saved region 5845:6797 - closest read 438249 ( +29) 5816:13117 ( +6320) (contained) saved region 5845:6797 - closest read 83848 ( +21) 5824:11654 ( +4857) (contained) saved region 5845:6797 - closest read 83849 ( +17) 5828:11676 ( +4879) (contained) saved region 5845:6797 - closest read 83846 ( +0) 5845:11668 ( +4871) (contained) saved region 5845:6797 - closest 5' read 438248 ( +66) 5779:13120 ( +6323) saved region 5845:6797 - closest 3' read 438248 ( +66) 5779:13120 ( +6323) search for confused edges: discard region 5845:6797 - no confusion in best edges Annotating repeats in reads for tig 29588/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29591/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29598/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29599/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29602/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29604/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29620/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29624/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4545:3774 - contained in read 439694 0- 4533 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29625/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29634/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29638/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29642/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29658/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29659/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29662/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29664/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29667/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29672/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29684/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29685/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29688/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29690/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29691/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29694/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29696/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29705/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29713/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29714/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29717/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29718/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29727/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29737/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29739/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29742/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29745/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29754/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29755/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29758/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29759/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29761/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29765/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29768/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29770/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29787/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29807/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29818/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29825/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29830/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29833/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29835/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29837/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29838/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29848/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 4023:5662 - contained in read 511120 947- 5662 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29850/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29852/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5041:0 - contained in read 153026 0- 5914 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29861/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29865/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29867/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29871/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29875/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29880/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29884/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:513 - contained in read 448998 0- 2513 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29887/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29895/90584. Annotated with 11 overlaps. Scan reads to discard spanned repeats. discard region 4887:12289 - contained in read 449624 2235- 13095 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29897/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29900/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29908/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29913/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29917/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29927/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29929/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29932/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1066:130 - contained in read 450868 0- 5738 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29941/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29942/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29944/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29948/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29949/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29950/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29952/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29959/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29962/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29972/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29981/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29983/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29986/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29991/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29992/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 29994/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30001/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30004/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30011/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30023/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30025/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30028/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30029/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30049/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30056/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1863:629 - contained in read 455470 0- 5827 discard region 2556:5624 - contained in read 476157 27- 6294 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30099/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30104/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30113/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30119/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30120/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30123/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30130/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30140/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30146/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30150/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30156/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30157/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30161/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 3233:23 - contained in read 459213 0- 4137 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30171/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30179/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30180/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30189/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30191/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30211/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30219/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30221/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30224/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30232/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30239/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30240/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30241/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30247/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 6544:5343 - contained in read 462568 0- 6678 discard region 8168:10591 - contained in read 509081 5234- 10592 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30256/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1005:1 - contained in read 462975 0- 6156 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30263/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30265/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30267/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30268/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30270/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30272/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30277/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30280/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30282/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30286/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30288/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30292/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 808:3678 - contained in read 308836 123- 3678 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30295/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30298/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30301/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30303/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30305/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30315/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30317/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30337/90584. Annotated with 9 overlaps. Scan reads to discard spanned repeats. discard region 14:4311 - contained in read 353976 0- 5733 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30340/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30344/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30350/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30354/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30358/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30362/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30372/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30373/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30379/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30391/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1257:3046 - contained in read 171897 0- 4152 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30394/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30399/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30406/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30410/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30418/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30420/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30422/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30426/90584. Annotated with 12 overlaps. Scan reads to discard spanned repeats. discard region 0:6124 - contained in read 174395 0- 9566 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30433/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30450/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30451/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30459/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30468/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30472/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30480/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30482/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30484/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30492/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30496/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30497/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30501/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30529/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30540/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30546/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30549/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30550/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30555/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30560/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30561/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30568/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30572/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30577/90584. Annotated with 13 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 398:4676 - closest 5' read 453268 ( +398) 0:3960 ( -716) saved region 398:4676 - closest 3' read 464787 ( -4) 402:4683 ( +7) search for confused edges: tig 30577 read 475665 pos 1030-8045 IS confused by 5' edge to read 395529 - best edge read 453268 len 2930 erate 0.0152 score 2885.46 - alt edge len 1946 erate 0.0198 score 1907.47 - absdiff 977.99 percdiff 40.8099 saved region 398:4676 - 1 best edges are potentially confused break tig 30577 into up to 2 pieces: 0 5176 repeat (length 5176) 5176 8045 unique (length 2869) Creating Unitig 91408 Creating Unitig 91409 For tig 30577 repeat region 0 5176 - 4/ 0 reads repeat/unique - unitig 91408 created. For tig 30577 unique region 5176 8045 - 0/ 1 reads repeat/unique - unitig 91409 created. Annotating repeats in reads for tig 30581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30583/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30612/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30628/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30644/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30651/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30655/90584. Annotated with 28 overlaps. Scan reads to discard spanned repeats. discard region 192:3146 - contained in read 478517 0- 6746 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30660/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30673/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30675/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30678/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30686/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30688/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30690/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30692/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30696/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30697/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30705/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30707/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30722/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30738/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30740/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30744/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30746/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30749/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30751/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30762/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30763/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30769/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30772/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30777/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30779/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30785/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30787/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30794/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 5331:2284 - contained in read 483171 0- 5342 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30801/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30812/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30815/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30818/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3396:6032 - contained in read 483730 28- 6038 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30824/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30842/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30846/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30852/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30863/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30864/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30868/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30871/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30877/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30881/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30883/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30890/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30892/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30894/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30904/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30906/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30910/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30912/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30915/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30921/90584. Annotated with 35 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 851:5860 - closest 5' read 487174 ( +851) 0:5847 ( -13) saved region 851:5860 - closest 3' read 489441 ( -4149) 5000:11313 ( +5453) search for confused edges: tig 30921 read 487174 pos 0-5847 IS confused by 3' edge to read 212134 - best edge read 489440 len 789 erate 0.0304 score 765.01 - alt edge len 1256 erate 0.0390 score 1207.02 - absdiff 442.00 percdiff 44.8271 saved region 851:5860 - 1 best edges are potentially confused break tig 30921 into up to 3 pieces: 0 351 unique (length 351) 351 6360 repeat (length 6009) 6360 11374 unique (length 5014) Creating Unitig 91410 Creating Unitig 91411 Creating Unitig 91412 For tig 30921 unique region 0 351 - 0/ 1 reads repeat/unique - unitig 91410 created. For tig 30921 repeat region 351 6360 - 10/ 0 reads repeat/unique - unitig 91411 created. For tig 30921 unique region 6360 11374 - 0/ 3 reads repeat/unique - unitig 91412 created. Annotating repeats in reads for tig 30924/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1134:2340 - contained in read 487240 0- 6419 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30928/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30934/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30937/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30938/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30942/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30951/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30960/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30967/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30971/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30973/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30982/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 1668:3440 - contained in read 489565 0- 6324 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30992/90584. Annotated with 26 overlaps. Scan reads to discard spanned repeats. discard region 4839:7942 - contained in read 489966 674- 10165 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30993/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 30995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31003/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 0:681 - contained in read 490345 0- 5796 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31010/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31012/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31015/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 0:4359 - contained in read 490526 0- 7266 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31017/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31024/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31027/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. discard region 1885:6627 - contained in read 491061 0- 6627 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31029/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 1888:3190 - contained in read 491099 0- 6270 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31043/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31048/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31059/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31062/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31068/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31070/90584. Annotated with 23 overlaps. Scan reads to discard spanned repeats. discard region 340:1922 - contained in read 504564 0- 5866 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31074/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31086/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31097/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31115/90584. Annotated with 5 overlaps. Scan reads to discard spanned repeats. discard region 2126:3399 - contained in read 494474 1- 3399 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31122/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31130/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31133/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31136/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31141/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31145/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31152/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31153/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31158/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31162/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31170/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31175/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31187/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31200/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31207/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 1093:5098 - contained in read 497328 0- 6569 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31211/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31222/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31228/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31230/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31246/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31247/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31258/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31282/90584. Annotated with 3 overlaps. Scan reads to discard spanned repeats. discard region 196:2296 - contained in read 499737 0- 4440 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31294/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31308/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31310/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31322/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31324/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31333/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31336/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31338/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31342/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31348/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31349/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31351/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31365/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31368/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31377/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31379/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31382/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31384/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31386/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31391/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31397/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31404/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31408/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 1968:4 - contained in read 504107 0- 5524 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31410/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31437/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31439/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31448/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31452/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31465/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31467/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31477/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31484/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31488/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31498/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31508/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31512/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31516/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31518/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31521/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31527/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31536/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31541/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31543/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31553/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2612:3672 - contained in read 275361 655- 5779 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31554/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31562/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31563/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31566/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31570/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31572/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4457:2481 - contained in read 509270 0- 8695 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31579/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31581/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31582/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31584/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31595/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31597/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31606/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31610/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31615/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31617/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31619/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31623/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31627/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31639/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31646/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31650/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31652/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31657/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31674/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31677/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31680/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31689/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31725/90584. Annotated with 2 overlaps. Scan reads to discard spanned repeats. discard region 5124:5935 - contained in read 514509 0- 5941 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31732/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31750/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31752/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31757/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31760/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31777/90584. Annotated with 4 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: saved region 2503:7160 - closest read 459966 ( +223) 2280:7802 ( +642) (contained) saved region 2503:7160 - closest 5' read 459966 ( +223) 2280:7802 ( +642) saved region 2503:7160 - closest 3' read 459966 ( +223) 2280:7802 ( +642) search for confused edges: discard region 2503:7160 - no confusion in best edges Annotating repeats in reads for tig 31778/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31780/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31783/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31788/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31790/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31792/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31806/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31810/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31813/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31816/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31818/90584. Annotated with 10 overlaps. Scan reads to discard spanned repeats. discard region 980:5743 - contained in read 518245 305- 5743 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31829/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31834/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31839/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31849/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31857/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31861/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 0:502 - contained in read 519702 0- 4256 discard region 2182:4256 - contained in read 519702 0- 4256 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31876/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31885/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31893/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31894/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31898/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31918/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31924/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31940/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 2412:1354 - contained in read 522887 0- 4877 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31943/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31955/90584. Annotated with 69 overlaps. Scan reads to discard spanned repeats. discard region 787:6360 - contained in read 523336 0- 9777 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31957/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31960/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31970/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31979/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31985/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31990/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31995/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 31997/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32000/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32007/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32013/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32017/90584. Annotated with 6 overlaps. Scan reads to discard spanned repeats. discard region 3837:6814 - contained in read 274850 311- 6814 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32020/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32035/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32042/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32049/90584. Annotated with 1 overlaps. Scan reads to discard spanned repeats. discard region 4383:3596 - contained in read 527049 0- 5480 thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32051/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32057/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32059/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32066/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32070/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32075/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32083/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32089/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32091/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32093/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32098/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32106/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32108/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32111/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32117/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32126/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32128/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32132/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32147/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32159/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32161/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: Annotating repeats in reads for tig 32172/90584. Annotated with 0 overlaps. Scan reads to discard spanned repeats. thickest edges to the repeat regions: search for confused edges: