================================================== file name: Ostrea_lurida-Scaff-30k.fa sequences: 264 total length: 10027135 bp (9397015 bp excl N/X-runs) GC level: 35.47 % bases masked: 1077998 bp ( 10.75 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- Retroelements 1768 608537 bp 6.07 % SINEs: 23 3238 bp 0.03 % Penelope 1513 553767 bp 5.52 % LINEs: 1694 589035 bp 5.87 % CRE/SLACS 0 0 bp 0.00 % L2/CR1/Rex 7 5913 bp 0.06 % R1/LOA/Jockey 0 0 bp 0.00 % R2/R4/NeSL 0 0 bp 0.00 % RTE/Bov-B 61 10797 bp 0.11 % L1/CIN4 0 0 bp 0.00 % LTR elements: 51 16264 bp 0.16 % BEL/Pao 4 469 bp 0.00 % Ty1/Copia 0 0 bp 0.00 % Gypsy/DIRS1 41 15239 bp 0.15 % Retroviral 0 0 bp 0.00 % DNA transposons 1478 217799 bp 2.17 % hobo-Activator 93 9527 bp 0.10 % Tc1-IS630-Pogo 290 54450 bp 0.54 % En-Spm 0 0 bp 0.00 % MuDR-IS905 0 0 bp 0.00 % PiggyBac 55 6615 bp 0.07 % Tourist/Harbinger 61 5415 bp 0.05 % Other (Mirage, 0 0 bp 0.00 % P-element, Transib) Rolling-circles 0 0 bp 0.00 % Unclassified: 815 145889 bp 1.45 % Total interspersed repeats: 972225 bp 9.70 % Small RNA: 2 357 bp 0.00 % Satellites: 31 6269 bp 0.06 % Simple repeats: 2143 82551 bp 0.82 % Low complexity: 313 16829 bp 0.17 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The query species was assumed to be crassostrea gigas RepeatMasker version open-4.0.6 , default mode run with rmblastn version 2.2.27+ RepBase Update 20160829, RM database version 20160829