Learned Number of Sibling Peptide Distributions | ||||
Neighboring bin smoothing: Y | ||||
bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
---|---|---|---|---|
0 | 0.00 < nsp <= 0.25 | 0.040 | 0.456 | 0.09 |
1 | 0.25 < nsp <= 0.83 | 0.034 | 0.173 | 0.20 |
2 | 0.83 < nsp <= 1.50 | 0.057 | 0.103 | 0.55 |
3 | 1.50 < nsp <= 2.45 | 0.072 | 0.074 | 0.97 |
4 | 2.45 < nsp <= 3.64 | 0.089 | 0.069 | 1.28 |
5 | 3.64 < nsp <= 5.95 | 0.112 | 0.047 | 2.37 |
6 | 5.95 < nsp <= 8.84 | 0.125 | 0.030 | 4.21 |
7 | 8.84 < nsp <= 14.14 | 0.145 | 0.019 | 7.53 |
8 | 14.14 < nsp <= 26.88 | 0.158 | 0.014 | 11.35 |
9 | 26.88 < nsp < inf | 0.167 | 0.014 | 11.86 |
Predicted Sensitivity and Error Rate | ||||
min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
---|---|---|---|---|
1.00 | 0.422 | 0.000 | 1647 | 0 |
0.99 | 0.679 | 0.000 | 2653 | 0 |
0.98 | 0.849 | 0.003 | 3317 | 8 |
0.97 | 0.867 | 0.003 | 3384 | 10 |
0.96 | 0.876 | 0.003 | 3421 | 12 |
0.95 | 0.884 | 0.004 | 3453 | 13 |
0.90 | 0.908 | 0.006 | 3545 | 20 |
0.80 | 0.936 | 0.011 | 3656 | 39 |
0.70 | 0.955 | 0.017 | 3730 | 63 |
0.60 | 0.973 | 0.026 | 3801 | 100 |
0.50 | 0.993 | 0.040 | 3876 | 161 |
0.40 | 1.000 | 0.047 | 3905 | 194 |
0.30 | 1.000 | 0.047 | 3905 | 194 |
0.20 | 1.000 | 0.047 | 3905 | 194 |
0.10 | 1.000 | 0.047 | 3905 | 194 |
0.00 | 1.000 | 0.047 | 3905 | 194 |
Error Table | |||
Error_Rate | min_prob | num_correct | num_incorrect |
---|---|---|---|
0.0000 | 1.0000 | 1647 | 0 |
0.0017 | 0.9888 | 3099 | 5 |
0.0021 | 0.9866 | 3224 | 7 |
0.0025 | 0.9800 | 3317 | 8 |
0.0030 | 0.9703 | 3384 | 10 |
0.0040 | 0.9411 | 3470 | 14 |
0.0050 | 0.9193 | 3518 | 18 |
0.0060 | 0.8929 | 3555 | 22 |
0.0070 | 0.8757 | 3584 | 25 |
0.0080 | 0.8599 | 3610 | 29 |
0.0091 | 0.8323 | 3632 | 33 |
0.0100 | 0.8094 | 3648 | 37 |
0.0151 | 0.7285 | 3715 | 57 |
0.0200 | 0.6680 | 3760 | 77 |
0.0252 | 0.6087 | 3797 | 98 |
0.0301 | 0.5719 | 3826 | 119 |
0.0400 | 0.5002 | 3876 | 161 |
protein_summary_header | |
---|---|
initial_min_peptide_prob | 0.05 |
min_peptide_probability | 0.20 |
min_peptide_weight | 0.50 |
num_input_1_spectra | 0 |
num_input_2_spectra | 19797 |
num_input_3_spectra | 13375 |
num_input_4_spectra | 2606 |
num_input_5_spectra | 266 |
num_predicted_correct_prots | 3904.5 |
reference_database | Cg-Giga_cont_AA.fa |
residue_substitution_list | I -> L |
sample_enzyme | trypsin |
source_files | /home/sean/Documents/proteome/interact-20161205_Sample_11.pep.xml |
source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_11.pep.xml |
total_no_spectrum_ids | 35712.5 |
program_details | |
analysis | proteinprophet |
time | 2017-02-20T12:43:22 |
version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
proteinprophet_details | |
degen_flag | Y |
final_peptide_wt_iters | 4 |
fpkm_flag | N |
groups_flag | Y |
initial_peptide_wt_iters | 2 |
nsp_distribution_iters | 9 |
nsp_flag | Y |
occam_flag | Y |
tpp_models | |
time | Mon Feb 20 12:43:31 2017 |