| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.25 | 0.040 | 0.456 | 0.09 |
| 1 | 0.25 < nsp <= 0.83 | 0.034 | 0.173 | 0.20 |
| 2 | 0.83 < nsp <= 1.50 | 0.057 | 0.103 | 0.55 |
| 3 | 1.50 < nsp <= 2.45 | 0.072 | 0.074 | 0.97 |
| 4 | 2.45 < nsp <= 3.64 | 0.089 | 0.069 | 1.28 |
| 5 | 3.64 < nsp <= 5.95 | 0.112 | 0.047 | 2.37 |
| 6 | 5.95 < nsp <= 8.84 | 0.125 | 0.030 | 4.21 |
| 7 | 8.84 < nsp <= 14.14 | 0.145 | 0.019 | 7.53 |
| 8 | 14.14 < nsp <= 26.88 | 0.158 | 0.014 | 11.35 |
| 9 | 26.88 < nsp < inf | 0.167 | 0.014 | 11.86 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.422 | 0.000 | 1647 | 0 |
| 0.99 | 0.679 | 0.000 | 2653 | 0 |
| 0.98 | 0.849 | 0.003 | 3317 | 8 |
| 0.97 | 0.867 | 0.003 | 3384 | 10 |
| 0.96 | 0.876 | 0.003 | 3421 | 12 |
| 0.95 | 0.884 | 0.004 | 3453 | 13 |
| 0.90 | 0.908 | 0.006 | 3545 | 20 |
| 0.80 | 0.936 | 0.011 | 3656 | 39 |
| 0.70 | 0.955 | 0.017 | 3730 | 63 |
| 0.60 | 0.973 | 0.026 | 3801 | 100 |
| 0.50 | 0.993 | 0.040 | 3876 | 161 |
| 0.40 | 1.000 | 0.047 | 3905 | 194 |
| 0.30 | 1.000 | 0.047 | 3905 | 194 |
| 0.20 | 1.000 | 0.047 | 3905 | 194 |
| 0.10 | 1.000 | 0.047 | 3905 | 194 |
| 0.00 | 1.000 | 0.047 | 3905 | 194 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1647 | 0 |
| 0.0017 | 0.9888 | 3099 | 5 |
| 0.0021 | 0.9866 | 3224 | 7 |
| 0.0025 | 0.9800 | 3317 | 8 |
| 0.0030 | 0.9703 | 3384 | 10 |
| 0.0040 | 0.9411 | 3470 | 14 |
| 0.0050 | 0.9193 | 3518 | 18 |
| 0.0060 | 0.8929 | 3555 | 22 |
| 0.0070 | 0.8757 | 3584 | 25 |
| 0.0080 | 0.8599 | 3610 | 29 |
| 0.0091 | 0.8323 | 3632 | 33 |
| 0.0100 | 0.8094 | 3648 | 37 |
| 0.0151 | 0.7285 | 3715 | 57 |
| 0.0200 | 0.6680 | 3760 | 77 |
| 0.0252 | 0.6087 | 3797 | 98 |
| 0.0301 | 0.5719 | 3826 | 119 |
| 0.0400 | 0.5002 | 3876 | 161 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 19797 |
| num_input_3_spectra | 13375 |
| num_input_4_spectra | 2606 |
| num_input_5_spectra | 266 |
| num_predicted_correct_prots | 3904.5 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_11.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_11.pep.xml |
| total_no_spectrum_ids | 35712.5 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T12:43:22 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 12:43:31 2017 |