| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.25 | 0.041 | 0.441 | 0.09 |
| 1 | 0.25 < nsp <= 0.88 | 0.037 | 0.173 | 0.21 |
| 2 | 0.88 < nsp <= 1.52 | 0.057 | 0.088 | 0.65 |
| 3 | 1.52 < nsp <= 2.53 | 0.074 | 0.074 | 1.00 |
| 4 | 2.53 < nsp <= 3.59 | 0.086 | 0.061 | 1.40 |
| 5 | 3.59 < nsp <= 5.85 | 0.109 | 0.063 | 1.71 |
| 6 | 5.85 < nsp <= 8.69 | 0.126 | 0.045 | 2.80 |
| 7 | 8.69 < nsp <= 14.07 | 0.147 | 0.027 | 5.51 |
| 8 | 14.07 < nsp <= 27.59 | 0.157 | 0.014 | 10.87 |
| 9 | 27.59 < nsp < inf | 0.167 | 0.012 | 13.55 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.434 | 0.000 | 1710 | 0 |
| 0.99 | 0.680 | 0.000 | 2680 | 0 |
| 0.98 | 0.855 | 0.002 | 3368 | 8 |
| 0.97 | 0.872 | 0.003 | 3437 | 10 |
| 0.96 | 0.881 | 0.003 | 3474 | 11 |
| 0.95 | 0.887 | 0.004 | 3496 | 13 |
| 0.90 | 0.911 | 0.006 | 3590 | 20 |
| 0.80 | 0.941 | 0.011 | 3707 | 40 |
| 0.70 | 0.961 | 0.017 | 3785 | 67 |
| 0.60 | 0.974 | 0.024 | 3839 | 96 |
| 0.50 | 0.991 | 0.037 | 3906 | 151 |
| 0.40 | 1.000 | 0.046 | 3941 | 190 |
| 0.30 | 1.000 | 0.046 | 3941 | 190 |
| 0.20 | 1.000 | 0.046 | 3941 | 190 |
| 0.10 | 1.000 | 0.046 | 3941 | 190 |
| 0.00 | 1.000 | 0.046 | 3941 | 190 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1710 | 0 |
| 0.0017 | 0.9893 | 3163 | 5 |
| 0.0020 | 0.9871 | 3263 | 7 |
| 0.0025 | 0.9798 | 3375 | 9 |
| 0.0030 | 0.9684 | 3444 | 10 |
| 0.0040 | 0.9406 | 3525 | 14 |
| 0.0050 | 0.9098 | 3571 | 18 |
| 0.0061 | 0.8881 | 3607 | 22 |
| 0.0070 | 0.8692 | 3633 | 26 |
| 0.0081 | 0.8430 | 3658 | 30 |
| 0.0091 | 0.8273 | 3677 | 34 |
| 0.0101 | 0.8114 | 3694 | 38 |
| 0.0150 | 0.7313 | 3763 | 57 |
| 0.0201 | 0.6569 | 3810 | 78 |
| 0.0252 | 0.5904 | 3845 | 99 |
| 0.0301 | 0.5400 | 3872 | 120 |
| 0.0400 | 0.4853 | 3918 | 163 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 20316 |
| num_input_3_spectra | 13129 |
| num_input_4_spectra | 2539 |
| num_input_5_spectra | 280 |
| num_predicted_correct_prots | 3940.9 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_11A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_11A.pep.xml |
| total_no_spectrum_ids | 35923.6 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T12:40:10 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 12:40:19 2017 |