| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.30 | 0.039 | 0.458 | 0.09 |
| 1 | 0.30 < nsp <= 0.93 | 0.037 | 0.186 | 0.20 |
| 2 | 0.93 < nsp <= 1.63 | 0.058 | 0.099 | 0.58 |
| 3 | 1.63 < nsp <= 2.60 | 0.074 | 0.064 | 1.16 |
| 4 | 2.60 < nsp <= 3.97 | 0.092 | 0.052 | 1.76 |
| 5 | 3.97 < nsp <= 6.03 | 0.112 | 0.048 | 2.35 |
| 6 | 6.03 < nsp <= 8.98 | 0.121 | 0.033 | 3.65 |
| 7 | 8.98 < nsp <= 14.97 | 0.145 | 0.028 | 5.09 |
| 8 | 14.97 < nsp <= 27.66 | 0.155 | 0.018 | 8.57 |
| 9 | 27.66 < nsp < inf | 0.167 | 0.014 | 12.16 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.439 | 0.000 | 1858 | 0 |
| 0.99 | 0.695 | 0.000 | 2939 | 0 |
| 0.98 | 0.856 | 0.002 | 3621 | 9 |
| 0.97 | 0.872 | 0.003 | 3688 | 11 |
| 0.96 | 0.884 | 0.003 | 3737 | 12 |
| 0.95 | 0.890 | 0.004 | 3762 | 14 |
| 0.90 | 0.910 | 0.005 | 3849 | 21 |
| 0.80 | 0.936 | 0.010 | 3958 | 39 |
| 0.70 | 0.953 | 0.015 | 4029 | 63 |
| 0.60 | 0.972 | 0.025 | 4110 | 107 |
| 0.50 | 0.988 | 0.038 | 4179 | 164 |
| 0.40 | 1.000 | 0.049 | 4228 | 220 |
| 0.30 | 1.000 | 0.049 | 4228 | 220 |
| 0.20 | 1.000 | 0.049 | 4228 | 220 |
| 0.10 | 1.000 | 0.049 | 4228 | 220 |
| 0.00 | 1.000 | 0.049 | 4228 | 220 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1858 | 0 |
| 0.0001 | 0.9906 | 2938 | 0 |
| 0.0017 | 0.9884 | 3400 | 6 |
| 0.0021 | 0.9862 | 3528 | 7 |
| 0.0025 | 0.9794 | 3632 | 9 |
| 0.0030 | 0.9671 | 3707 | 11 |
| 0.0040 | 0.9393 | 3792 | 15 |
| 0.0050 | 0.9080 | 3839 | 19 |
| 0.0061 | 0.8823 | 3875 | 24 |
| 0.0071 | 0.8631 | 3903 | 28 |
| 0.0080 | 0.8362 | 3925 | 32 |
| 0.0091 | 0.8172 | 3947 | 36 |
| 0.0100 | 0.7974 | 3963 | 40 |
| 0.0150 | 0.7068 | 4026 | 61 |
| 0.0201 | 0.6461 | 4072 | 83 |
| 0.0250 | 0.6029 | 4108 | 106 |
| 0.0301 | 0.5556 | 4140 | 128 |
| 0.0403 | 0.4872 | 4191 | 176 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 22738 |
| num_input_3_spectra | 14856 |
| num_input_4_spectra | 3070 |
| num_input_5_spectra | 362 |
| num_predicted_correct_prots | 4228.1 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_12.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_12.pep.xml |
| total_no_spectrum_ids | 40643.1 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T12:50:32 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 12:50:42 2017 |