| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.29 | 0.040 | 0.401 | 0.10 |
| 1 | 0.29 < nsp <= 0.92 | 0.037 | 0.174 | 0.21 |
| 2 | 0.92 < nsp <= 1.62 | 0.058 | 0.125 | 0.46 |
| 3 | 1.62 < nsp <= 2.66 | 0.077 | 0.091 | 0.84 |
| 4 | 2.66 < nsp <= 3.97 | 0.091 | 0.062 | 1.47 |
| 5 | 3.97 < nsp <= 5.99 | 0.104 | 0.049 | 2.10 |
| 6 | 5.99 < nsp <= 9.00 | 0.126 | 0.041 | 3.07 |
| 7 | 9.00 < nsp <= 14.95 | 0.145 | 0.026 | 5.67 |
| 8 | 14.95 < nsp <= 26.70 | 0.154 | 0.017 | 9.13 |
| 9 | 26.70 < nsp < inf | 0.170 | 0.014 | 11.75 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.442 | 0.000 | 1868 | 0 |
| 0.99 | 0.813 | 0.002 | 3440 | 5 |
| 0.98 | 0.872 | 0.002 | 3687 | 9 |
| 0.97 | 0.885 | 0.003 | 3743 | 10 |
| 0.96 | 0.892 | 0.003 | 3775 | 11 |
| 0.95 | 0.898 | 0.003 | 3801 | 13 |
| 0.90 | 0.919 | 0.005 | 3888 | 19 |
| 0.80 | 0.946 | 0.010 | 4002 | 39 |
| 0.70 | 0.962 | 0.015 | 4069 | 61 |
| 0.60 | 0.981 | 0.025 | 4152 | 106 |
| 0.50 | 0.995 | 0.036 | 4212 | 155 |
| 0.40 | 1.000 | 0.040 | 4231 | 176 |
| 0.30 | 1.000 | 0.040 | 4231 | 176 |
| 0.20 | 1.000 | 0.040 | 4231 | 176 |
| 0.10 | 1.000 | 0.040 | 4231 | 176 |
| 0.00 | 1.000 | 0.040 | 4231 | 176 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1868 | 0 |
| 0.0015 | 0.9901 | 3437 | 5 |
| 0.0020 | 0.9862 | 3602 | 7 |
| 0.0025 | 0.9765 | 3717 | 9 |
| 0.0030 | 0.9595 | 3778 | 11 |
| 0.0040 | 0.9254 | 3847 | 16 |
| 0.0050 | 0.8982 | 3889 | 20 |
| 0.0061 | 0.8749 | 3923 | 24 |
| 0.0070 | 0.8495 | 3948 | 28 |
| 0.0081 | 0.8283 | 3971 | 32 |
| 0.0090 | 0.8094 | 3989 | 36 |
| 0.0100 | 0.7972 | 4006 | 41 |
| 0.0150 | 0.6973 | 4071 | 62 |
| 0.0200 | 0.6430 | 4115 | 84 |
| 0.0251 | 0.5983 | 4152 | 107 |
| 0.0300 | 0.5469 | 4183 | 129 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 22888 |
| num_input_3_spectra | 14399 |
| num_input_4_spectra | 2753 |
| num_input_5_spectra | 345 |
| num_predicted_correct_prots | 4230.9 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_12A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_12A.pep.xml |
| total_no_spectrum_ids | 40033.3 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T12:46:55 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 12:47:05 2017 |