| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.25 | 0.041 | 0.469 | 0.09 |
| 1 | 0.25 < nsp <= 0.82 | 0.036 | 0.182 | 0.20 |
| 2 | 0.82 < nsp <= 1.50 | 0.058 | 0.095 | 0.61 |
| 3 | 1.50 < nsp <= 2.47 | 0.074 | 0.061 | 1.20 |
| 4 | 2.47 < nsp <= 3.74 | 0.085 | 0.050 | 1.68 |
| 5 | 3.74 < nsp <= 5.67 | 0.105 | 0.044 | 2.38 |
| 6 | 5.67 < nsp <= 8.64 | 0.126 | 0.035 | 3.62 |
| 7 | 8.64 < nsp <= 14.30 | 0.150 | 0.026 | 5.69 |
| 8 | 14.30 < nsp <= 26.74 | 0.159 | 0.022 | 7.39 |
| 9 | 26.74 < nsp < inf | 0.167 | 0.016 | 10.53 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.426 | 0.000 | 1670 | 0 |
| 0.99 | 0.678 | 0.000 | 2657 | 0 |
| 0.98 | 0.846 | 0.003 | 3318 | 8 |
| 0.97 | 0.865 | 0.003 | 3391 | 10 |
| 0.96 | 0.875 | 0.003 | 3431 | 12 |
| 0.95 | 0.883 | 0.004 | 3464 | 13 |
| 0.90 | 0.908 | 0.006 | 3562 | 21 |
| 0.80 | 0.937 | 0.011 | 3674 | 41 |
| 0.70 | 0.958 | 0.018 | 3755 | 68 |
| 0.60 | 0.972 | 0.025 | 3812 | 98 |
| 0.50 | 0.990 | 0.038 | 3881 | 155 |
| 0.40 | 1.000 | 0.049 | 3921 | 202 |
| 0.30 | 1.000 | 0.049 | 3921 | 202 |
| 0.20 | 1.000 | 0.049 | 3921 | 202 |
| 0.10 | 1.000 | 0.049 | 3921 | 202 |
| 0.00 | 1.000 | 0.049 | 3921 | 202 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1670 | 0 |
| 0.0018 | 0.9887 | 3131 | 6 |
| 0.0021 | 0.9865 | 3223 | 7 |
| 0.0025 | 0.9810 | 3318 | 8 |
| 0.0030 | 0.9701 | 3391 | 10 |
| 0.0040 | 0.9438 | 3477 | 14 |
| 0.0050 | 0.9197 | 3529 | 18 |
| 0.0060 | 0.8968 | 3566 | 22 |
| 0.0071 | 0.8722 | 3597 | 26 |
| 0.0080 | 0.8547 | 3620 | 29 |
| 0.0091 | 0.8362 | 3642 | 33 |
| 0.0100 | 0.8161 | 3659 | 37 |
| 0.0150 | 0.7381 | 3728 | 57 |
| 0.0200 | 0.6625 | 3776 | 77 |
| 0.0251 | 0.6018 | 3811 | 98 |
| 0.0300 | 0.5638 | 3840 | 119 |
| 0.0400 | 0.4927 | 3888 | 162 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 21550 |
| num_input_3_spectra | 12677 |
| num_input_4_spectra | 2371 |
| num_input_5_spectra | 252 |
| num_predicted_correct_prots | 3921.5 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_16.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_16.pep.xml |
| total_no_spectrum_ids | 36510.4 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T12:57:11 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 12:57:20 2017 |