| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.26 | 0.041 | 0.442 | 0.09 |
| 1 | 0.26 < nsp <= 0.84 | 0.035 | 0.171 | 0.21 |
| 2 | 0.84 < nsp <= 1.54 | 0.059 | 0.092 | 0.64 |
| 3 | 1.54 < nsp <= 2.51 | 0.072 | 0.072 | 1.00 |
| 4 | 2.51 < nsp <= 3.73 | 0.085 | 0.056 | 1.51 |
| 5 | 3.73 < nsp <= 5.71 | 0.106 | 0.053 | 1.99 |
| 6 | 5.71 < nsp <= 8.68 | 0.130 | 0.042 | 3.07 |
| 7 | 8.68 < nsp <= 14.11 | 0.149 | 0.031 | 4.80 |
| 8 | 14.11 < nsp <= 27.70 | 0.158 | 0.022 | 7.33 |
| 9 | 27.70 < nsp < inf | 0.165 | 0.018 | 9.13 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.437 | 0.000 | 1675 | 0 |
| 0.99 | 0.679 | 0.000 | 2601 | 0 |
| 0.98 | 0.860 | 0.003 | 3297 | 8 |
| 0.97 | 0.876 | 0.003 | 3358 | 10 |
| 0.96 | 0.888 | 0.003 | 3402 | 12 |
| 0.95 | 0.896 | 0.004 | 3435 | 13 |
| 0.90 | 0.919 | 0.006 | 3522 | 20 |
| 0.80 | 0.945 | 0.010 | 3622 | 38 |
| 0.70 | 0.964 | 0.017 | 3694 | 62 |
| 0.60 | 0.982 | 0.025 | 3763 | 98 |
| 0.50 | 0.994 | 0.035 | 3810 | 138 |
| 0.40 | 1.000 | 0.041 | 3832 | 163 |
| 0.30 | 1.000 | 0.041 | 3832 | 163 |
| 0.20 | 1.000 | 0.041 | 3832 | 163 |
| 0.10 | 1.000 | 0.041 | 3832 | 163 |
| 0.00 | 1.000 | 0.041 | 3832 | 163 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1675 | 0 |
| 0.0018 | 0.9894 | 3094 | 5 |
| 0.0021 | 0.9873 | 3196 | 7 |
| 0.0025 | 0.9810 | 3294 | 8 |
| 0.0030 | 0.9698 | 3367 | 10 |
| 0.0041 | 0.9450 | 3453 | 14 |
| 0.0051 | 0.9113 | 3503 | 18 |
| 0.0060 | 0.8857 | 3534 | 21 |
| 0.0070 | 0.8614 | 3560 | 25 |
| 0.0081 | 0.8398 | 3582 | 29 |
| 0.0091 | 0.8191 | 3601 | 33 |
| 0.0100 | 0.8058 | 3616 | 37 |
| 0.0151 | 0.7214 | 3680 | 56 |
| 0.0201 | 0.6640 | 3725 | 76 |
| 0.0252 | 0.6074 | 3761 | 97 |
| 0.0300 | 0.5417 | 3788 | 117 |
| 0.0401 | 0.4582 | 3830 | 160 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 20598 |
| num_input_3_spectra | 12374 |
| num_input_4_spectra | 2286 |
| num_input_5_spectra | 260 |
| num_predicted_correct_prots | 3832.4 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_16A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_16A.pep.xml |
| total_no_spectrum_ids | 35211.6 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T12:53:47 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 12:53:55 2017 |