| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.31 | 0.039 | 0.427 | 0.09 |
| 1 | 0.31 < nsp <= 0.93 | 0.036 | 0.166 | 0.22 |
| 2 | 0.93 < nsp <= 1.60 | 0.059 | 0.091 | 0.65 |
| 3 | 1.60 < nsp <= 2.66 | 0.078 | 0.091 | 0.85 |
| 4 | 2.66 < nsp <= 3.91 | 0.091 | 0.066 | 1.37 |
| 5 | 3.91 < nsp <= 5.95 | 0.104 | 0.057 | 1.82 |
| 6 | 5.95 < nsp <= 8.92 | 0.122 | 0.041 | 2.95 |
| 7 | 8.92 < nsp <= 14.65 | 0.142 | 0.025 | 5.67 |
| 8 | 14.65 < nsp <= 25.72 | 0.154 | 0.018 | 8.60 |
| 9 | 25.72 < nsp < inf | 0.174 | 0.017 | 10.35 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.444 | 0.000 | 1795 | 0 |
| 0.99 | 0.695 | 0.000 | 2810 | 0 |
| 0.98 | 0.861 | 0.002 | 3481 | 8 |
| 0.97 | 0.879 | 0.003 | 3553 | 10 |
| 0.96 | 0.890 | 0.003 | 3600 | 12 |
| 0.95 | 0.898 | 0.004 | 3630 | 13 |
| 0.90 | 0.920 | 0.005 | 3719 | 20 |
| 0.80 | 0.944 | 0.009 | 3815 | 37 |
| 0.70 | 0.962 | 0.015 | 3888 | 60 |
| 0.60 | 0.977 | 0.024 | 3952 | 95 |
| 0.50 | 0.992 | 0.034 | 4009 | 143 |
| 0.40 | 1.000 | 0.043 | 4043 | 180 |
| 0.30 | 1.000 | 0.043 | 4043 | 180 |
| 0.20 | 1.000 | 0.043 | 4043 | 180 |
| 0.10 | 1.000 | 0.043 | 4043 | 180 |
| 0.00 | 1.000 | 0.043 | 4043 | 180 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1795 | 0 |
| 0.0016 | 0.9893 | 3259 | 5 |
| 0.0020 | 0.9861 | 3402 | 7 |
| 0.0025 | 0.9788 | 3507 | 9 |
| 0.0030 | 0.9664 | 3576 | 11 |
| 0.0040 | 0.9368 | 3657 | 15 |
| 0.0050 | 0.9114 | 3706 | 19 |
| 0.0060 | 0.8787 | 3740 | 23 |
| 0.0070 | 0.8577 | 3765 | 27 |
| 0.0081 | 0.8416 | 3789 | 31 |
| 0.0090 | 0.8146 | 3808 | 35 |
| 0.0100 | 0.7906 | 3824 | 39 |
| 0.0150 | 0.7064 | 3885 | 59 |
| 0.0201 | 0.6357 | 3927 | 81 |
| 0.0251 | 0.5898 | 3961 | 102 |
| 0.0301 | 0.5385 | 3989 | 124 |
| 0.0401 | 0.4645 | 4033 | 169 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 21616 |
| num_input_3_spectra | 13927 |
| num_input_4_spectra | 2671 |
| num_input_5_spectra | 318 |
| num_predicted_correct_prots | 4043.1 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_19.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_19.pep.xml |
| total_no_spectrum_ids | 38183.9 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:04:04 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:04:13 2017 |