+1 Models | |
---|---|
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: 1.00 | |
pos model | gaussian (mean 2.00, stdev 0.40) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010789 |
pos_bandwidth | 0.010789 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
+2 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 25770.6 |
num_iterations | 27 |
prior_probability | 0.693 |
tot_num_spectra | 47789 |
Comet discrim score [fval] negmean: -2.03 | |
pos model | gaussian (mean 3.01, stdev 2.11) |
neg model | gaussian (mean -0.93, stdev 1.10) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.023, ntt=2 0.976) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.932, 1<=nmc<=2 0.068, nmc>=3 0.000) |
neg model | (nmc=0 0.483, 1<=nmc<=2 0.515, nmc>=3 0.003) |
Accurate Mass Model | |
neg_bandwidth | 0.010789 |
pos_bandwidth | 0.010789 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.031, 0 0.853, 1 0.106, 2 0.010, 3 0.000) |
neg model | (-3 0.000, -2 0.000, -1 0.303, 0 0.315, 1 0.165, 2 0.115, 3 0.103) |
+3 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 15699.7 |
num_iterations | 27 |
prior_probability | 0.594 |
tot_num_spectra | 36675 |
Comet discrim score [fval] negmean: -1.59 | |
pos model | gaussian (mean 4.17, stdev 2.50) |
neg model | gaussian (mean -0.53, stdev 1.06) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.021, ntt=2 0.979) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.821, 1<=nmc<=2 0.179, nmc>=3 0.000) |
neg model | (nmc=0 0.269, 1<=nmc<=2 0.722, nmc>=3 0.009) |
Accurate Mass Model | |
neg_bandwidth | 0.010789 |
pos_bandwidth | 0.010789 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.022, 0 0.774, 1 0.151, 2 0.045, 3 0.008) |
neg model | (-3 0.000, -2 0.000, -1 0.230, 0 0.225, 1 0.204, 2 0.178, 3 0.164) |
+4 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 2904.4 |
num_iterations | 26 |
prior_probability | 0.513 |
tot_num_spectra | 8241 |
Comet discrim score [fval] negmean: -2.04 | |
pos model | gaussian (mean 1.99, stdev 1.54) |
neg model | gaussian (mean -1.23, stdev 0.81) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.025, ntt=2 0.975) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.681, 1<=nmc<=2 0.319, nmc>=3 0.000) |
neg model | (nmc=0 0.170, 1<=nmc<=2 0.812, nmc>=3 0.019) |
Accurate Mass Model | |
neg_bandwidth | 0.010789 |
pos_bandwidth | 0.010789 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.016, 0 0.778, 1 0.155, 2 0.043, 3 0.007) |
neg model | (-3 0.000, -2 0.000, -1 0.228, 0 0.212, 1 0.202, 2 0.179, 3 0.178) |
+5 Models | |
comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
est_tot_correct | 352.3 |
num_iterations | 26 |
prior_probability | 0.353 |
tot_num_spectra | 1684 |
Comet discrim score [fval] negmean: -2.93 | |
pos model | gaussian (mean 1.96, stdev 1.54) |
neg model | gaussian (mean -1.76, stdev 1.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
neg model | (ntt=0 0.000, ntt=1 0.021, ntt=2 0.979) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.587, 1<=nmc<=2 0.413, nmc>=3 0.000) |
neg model | (nmc=0 0.126, 1<=nmc<=2 0.848, nmc>=3 0.026) |
Accurate Mass Model | |
neg_bandwidth | 0.010789 |
pos_bandwidth | 0.010789 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.000, -2 0.000, -1 0.005, 0 0.892, 1 0.095, 2 0.007, 3 0.001) |
neg model | (-3 0.000, -2 0.000, -1 0.208, 0 0.181, 1 0.209, 2 0.207, 3 0.194) |
+6 Models | |
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: -5.00 | |
pos model | gaussian (mean 4.56, stdev 1.24) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010789 |
pos_bandwidth | 0.010789 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
+7 Models | |
comments | using training data negative distributions |
est_tot_correct | 0.0 |
num_iterations | 21 |
prior_probability | 0.000 |
tot_num_spectra | 0 |
Comet discrim score [fval] negmean: -5.00 | |
pos model | gaussian (mean 4.56, stdev 1.24) |
neg model | gaussian (mean 0.00, stdev 3.16) |
no. tolerable trypsin term. [ntt] | |
pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
no. missed enz. cleavages [nmc] | |
pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
Accurate Mass Model | |
neg_bandwidth | 0.010789 |
pos_bandwidth | 0.010789 |
isotopic peak mass difference [IsoMassDiff] | |
pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
MS run: /home/sean/Documents/proteome/20161205_Sample_19A | |
---|---|
msManufacturer | Thermo |
msModel | Orbitrap Fusion Lumos |
raw_data | .mzXML |
raw_data_type | raw |
sample_enzyme | |
name | trypsin |
specificity | cut: KR no_cut: P sense: C |
search_summary | |
base_name | /home/sean/Documents/proteome/20161205_Sample_19A |
fragment_mass_type | monoisotopic |
precursor_mass_type | monoisotopic |
search_engine | Comet |
search_engine_version | 2016.01 rev. 2 |
search_id | 1 |
search_database | |
local_path | Cg-Giga_cont_AA.fa |
type | AA |
enzymatic_search_constraint | |
enzyme | Trypsin |
max_num_internal_cleavages | 2 |
min_number_termini | 2 |
Aminoacid and Terminal Modifications | |
M | mass: 147.035385 massdiff: 15.994900 symbol: * variable: Y |
C | mass: 160.030649 massdiff: 57.021464 variable: N |
Search Parameters | |
# comet_version | 2016.01 rev. 0 |
activation_method | ALL |
add_A_alanine | 0.000000 |
add_B_user_amino_acid | 0.000000 |
add_C_cysteine | 57.021464 |
add_Cterm_peptide | 0.000000 |
add_Cterm_protein | 0.000000 |
add_D_aspartic_acid | 0.000000 |
add_E_glutamic_acid | 0.000000 |
add_F_phenylalanine | 0.000000 |
add_G_glycine | 0.000000 |
add_H_histidine | 0.000000 |
add_I_isoleucine | 0.000000 |
add_J_user_amino_acid | 0.000000 |
add_K_lysine | 0.000000 |
add_L_leucine | 0.000000 |
add_M_methionine | 0.000000 |
add_N_asparagine | 0.000000 |
add_Nterm_peptide | 0.000000 |
add_Nterm_protein | 0.000000 |
add_O_ornithine | 0.000000 |
add_P_proline | 0.000000 |
add_Q_glutamine | 0.000000 |
add_R_arginine | 0.000000 |
add_S_serine | 0.000000 |
add_T_threonine | 0.000000 |
add_U_celenocysteinee | 0.000000 |
add_V_valine | 0.000000 |
add_W_tryptophan | 0.000000 |
add_X_user_amino_acid | 0.000000 |
add_Y_tyrosine | 0.000000 |
add_Z_user_amino_acid | 0.000000 |
allowed_missed_cleavage | 2 |
clear_mz_range | 0.000000 0.000000 |
clip_nterm_methionine | 0 |
database_name | Cg-Giga_cont_AA.fa |
decoy_prefix | DECOY_ |
decoy_search | 1 |
digest_mass_range | 600.000000 5000.000000 |
fragment_bin_offset | 0.400000 |
fragment_bin_tol | 1.000500 |
isotope_error | 1 |
mass_offsets | |
mass_type_fragment | 1 |
mass_type_parent | 1 |
max_fragment_charge | 3 |
max_precursor_charge | 6 |
max_variable_mods_in_peptide | 5 |
minimum_intensity | 0 |
minimum_peaks | 10 |
ms_level | 2 |
nucleotide_reading_frame | 0 |
num_enzyme_termini | 2 |
num_output_lines | 5 |
num_results | 100 |
num_threads | 8 |
output_outfiles | 0 |
output_pepxmlfile | 1 |
output_percolatorfile | 0 |
output_sqtfile | 0 |
output_sqtstream | 0 |
output_suffix | |
output_txtfile | 0 |
override_charge | 0 |
peptide_mass_tolerance | 20.000000 |
peptide_mass_units | 2 |
precursor_charge | 0 0 |
precursor_tolerance_type | 1 |
print_expect_score | 1 |
remove_precursor_peak | 0 |
remove_precursor_tolerance | 1.500000 |
require_variable_mod | 0 |
sample_enzyme_number | 1 |
scan_range | 0 0 |
search_enzyme_number | 1 |
show_fragment_ions | 0 |
skip_researching | 1 |
spectrum_batch_size | 0 |
theoretical_fragment_ions | 1 |
use_A_ions | 0 |
use_B_ions | 1 |
use_C_ions | 0 |
use_NL_ions | 0 |
use_X_ions | 0 |
use_Y_ions | 1 |
use_Z_ions | 0 |
variable_mod01 | 15.994900 M 0 3 -1 0 0 |
variable_mod02 | 0.000000 X 0 3 -1 0 0 |
variable_mod03 | 0.000000 X 0 3 -1 0 0 |
variable_mod04 | 0.000000 X 0 3 -1 0 0 |
variable_mod05 | 0.000000 X 0 3 -1 0 0 |
variable_mod06 | 0.000000 X 0 3 -1 0 0 |
variable_mod07 | 0.000000 X 0 3 -1 0 0 |
variable_mod08 | 0.000000 X 0 3 -1 0 0 |
variable_mod09 | 0.000000 X 0 3 -1 0 0 |
Analysis Timestamps | |
peptideprophet | 2017-02-20T12:58:13 (id: 1) |
database_refresh | 2017-02-20T12:58:01 (id: 1) |
database | Cg-Giga_cont_AA.fa |
min_num_enz_term | 0 |
Predicted Sensitivity and Error Rate | ||||
min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
---|---|---|---|---|
0.9999 | 0.5528 | 0.0000 | 24725 | 0 |
0.9990 | 0.6374 | 0.0001 | 28508 | 2 |
0.9900 | 0.7437 | 0.0006 | 33265 | 22 |
0.9800 | 0.7797 | 0.0013 | 34875 | 45 |
0.9500 | 0.8315 | 0.0033 | 37191 | 124 |
0.9000 | 0.8745 | 0.0070 | 39115 | 275 |
0.8500 | 0.9024 | 0.0111 | 40363 | 451 |
0.8000 | 0.9212 | 0.0150 | 41201 | 628 |
0.7500 | 0.9358 | 0.0191 | 41854 | 816 |
0.7000 | 0.9482 | 0.0237 | 42412 | 1028 |
0.6500 | 0.9561 | 0.0272 | 42764 | 1195 |
0.6000 | 0.9612 | 0.0300 | 42993 | 1332 |
0.5500 | 0.9655 | 0.0330 | 43186 | 1475 |
0.5000 | 0.9693 | 0.0362 | 43355 | 1629 |
0.4500 | 0.9732 | 0.0401 | 43528 | 1818 |
0.4000 | 0.9767 | 0.0445 | 43686 | 2032 |
0.3500 | 0.9796 | 0.0488 | 43815 | 2248 |
0.3000 | 0.9826 | 0.0544 | 43950 | 2527 |
0.2500 | 0.9856 | 0.0613 | 44082 | 2878 |
0.2000 | 0.9884 | 0.0698 | 44209 | 3318 |
0.1500 | 0.9916 | 0.0828 | 44351 | 4004 |
0.1000 | 0.9944 | 0.0993 | 44477 | 4905 |
0.0500 | 0.9973 | 0.1281 | 44606 | 6554 |
0.0000 | 1.0000 | 0.5261 | 44727 | 49662 |
+2 only | ||||
0.9999 | 0.5211 | 0.0000 | 13428 | 0 |
0.9990 | 0.6158 | 0.0001 | 15870 | 1 |
0.9900 | 0.7347 | 0.0007 | 18934 | 14 |
0.9800 | 0.7747 | 0.0015 | 19964 | 29 |
0.9500 | 0.8334 | 0.0037 | 21478 | 81 |
0.9000 | 0.8805 | 0.0077 | 22692 | 176 |
0.8500 | 0.9101 | 0.0120 | 23454 | 285 |
0.8000 | 0.9299 | 0.0161 | 23963 | 392 |
0.7500 | 0.9438 | 0.0200 | 24323 | 496 |
0.7000 | 0.9547 | 0.0239 | 24603 | 601 |
0.6500 | 0.9619 | 0.0271 | 24788 | 689 |
0.6000 | 0.9670 | 0.0299 | 24920 | 768 |
0.5500 | 0.9707 | 0.0324 | 25014 | 839 |
0.5000 | 0.9741 | 0.0353 | 25103 | 919 |
0.4500 | 0.9773 | 0.0386 | 25187 | 1011 |
0.4000 | 0.9803 | 0.0423 | 25263 | 1115 |
0.3500 | 0.9827 | 0.0458 | 25324 | 1217 |
0.3000 | 0.9851 | 0.0503 | 25386 | 1343 |
0.2500 | 0.9877 | 0.0564 | 25453 | 1521 |
0.2000 | 0.9901 | 0.0639 | 25516 | 1743 |
0.1500 | 0.9928 | 0.0751 | 25586 | 2078 |
0.1000 | 0.9955 | 0.0907 | 25654 | 2559 |
0.0500 | 0.9979 | 0.1154 | 25717 | 3356 |
0.0000 | 1.0000 | 0.4607 | 25771 | 22018 |
+3 only | ||||
0.9999 | 0.6114 | 0.0000 | 9599 | 0 |
0.9990 | 0.6783 | 0.0001 | 10648 | 1 |
0.9900 | 0.7634 | 0.0005 | 11985 | 6 |
0.9800 | 0.7914 | 0.0010 | 12424 | 13 |
0.9500 | 0.8338 | 0.0027 | 13091 | 35 |
0.9000 | 0.8705 | 0.0058 | 13666 | 80 |
0.8500 | 0.8950 | 0.0095 | 14052 | 134 |
0.8000 | 0.9119 | 0.0131 | 14316 | 190 |
0.7500 | 0.9272 | 0.0175 | 14556 | 260 |
0.7000 | 0.9427 | 0.0232 | 14799 | 352 |
0.6500 | 0.9516 | 0.0272 | 14939 | 418 |
0.6000 | 0.9559 | 0.0297 | 15007 | 459 |
0.5500 | 0.9608 | 0.0331 | 15085 | 516 |
0.5000 | 0.9649 | 0.0365 | 15149 | 574 |
0.4500 | 0.9695 | 0.0412 | 15221 | 655 |
0.4000 | 0.9737 | 0.0464 | 15287 | 743 |
0.3500 | 0.9770 | 0.0513 | 15338 | 829 |
0.3000 | 0.9804 | 0.0576 | 15392 | 941 |
0.2500 | 0.9836 | 0.0650 | 15442 | 1074 |
0.2000 | 0.9868 | 0.0746 | 15493 | 1249 |
0.1500 | 0.9906 | 0.0898 | 15552 | 1534 |
0.1000 | 0.9933 | 0.1057 | 15594 | 1844 |
0.0500 | 0.9967 | 0.1390 | 15647 | 2527 |
0.0000 | 1.0000 | 0.5719 | 15700 | 20975 |
+4 only | ||||
0.9999 | 0.5399 | 0.0000 | 1568 | 0 |
0.9990 | 0.6252 | 0.0001 | 1816 | 0 |
0.9900 | 0.7308 | 0.0007 | 2123 | 1 |
0.9800 | 0.7698 | 0.0014 | 2236 | 3 |
0.9500 | 0.8081 | 0.0029 | 2347 | 7 |
0.9000 | 0.8491 | 0.0064 | 2466 | 16 |
0.8500 | 0.8793 | 0.0109 | 2554 | 28 |
0.8000 | 0.9001 | 0.0154 | 2614 | 41 |
0.7500 | 0.9164 | 0.0200 | 2662 | 54 |
0.7000 | 0.9274 | 0.0240 | 2694 | 66 |
0.6500 | 0.9356 | 0.0278 | 2717 | 78 |
0.6000 | 0.9440 | 0.0326 | 2742 | 92 |
0.5500 | 0.9497 | 0.0365 | 2758 | 105 |
0.5000 | 0.9553 | 0.0412 | 2775 | 119 |
0.4500 | 0.9598 | 0.0456 | 2788 | 133 |
0.4000 | 0.9649 | 0.0519 | 2803 | 153 |
0.3500 | 0.9697 | 0.0590 | 2816 | 177 |
0.3000 | 0.9756 | 0.0697 | 2834 | 212 |
0.2500 | 0.9795 | 0.0784 | 2845 | 242 |
0.2000 | 0.9829 | 0.0882 | 2855 | 276 |
0.1500 | 0.9870 | 0.1041 | 2867 | 333 |
0.1000 | 0.9918 | 0.1300 | 2881 | 430 |
0.0500 | 0.9956 | 0.1652 | 2892 | 572 |
0.0000 | 1.0000 | 0.6476 | 2904 | 5337 |
+5 only | ||||
0.9999 | 0.3689 | 0.0000 | 130 | 0 |
0.9990 | 0.4938 | 0.0001 | 174 | 0 |
0.9900 | 0.6350 | 0.0011 | 224 | 0 |
0.9800 | 0.7105 | 0.0026 | 250 | 1 |
0.9500 | 0.7791 | 0.0054 | 275 | 1 |
0.9000 | 0.8266 | 0.0094 | 291 | 3 |
0.8500 | 0.8590 | 0.0141 | 303 | 4 |
0.8000 | 0.8730 | 0.0173 | 308 | 5 |
0.7500 | 0.8861 | 0.0213 | 312 | 7 |
0.7000 | 0.8986 | 0.0258 | 317 | 8 |
0.6500 | 0.9082 | 0.0303 | 320 | 10 |
0.6000 | 0.9205 | 0.0376 | 324 | 13 |
0.5500 | 0.9321 | 0.0452 | 328 | 16 |
0.5000 | 0.9337 | 0.0464 | 329 | 16 |
0.4500 | 0.9417 | 0.0547 | 332 | 19 |
0.4000 | 0.9453 | 0.0592 | 333 | 21 |
0.3500 | 0.9538 | 0.0717 | 336 | 26 |
0.3000 | 0.9604 | 0.0830 | 338 | 31 |
0.2500 | 0.9711 | 0.1066 | 342 | 41 |
0.2000 | 0.9788 | 0.1269 | 345 | 50 |
0.1500 | 0.9836 | 0.1443 | 347 | 58 |
0.1000 | 0.9888 | 0.1705 | 348 | 72 |
0.0500 | 0.9945 | 0.2196 | 350 | 99 |
0.0000 | 1.0000 | 0.7908 | 352 | 1332 |
Error Table | |||
Error_Rate | min_prob | num_correct | num_incorrect |
---|---|---|---|
0.0000 | 1.0000 | 7957 | 0 |
0.0001 | 0.9985 | 29190 | 3 |
0.0002 | 0.9970 | 30677 | 6 |
0.0003 | 0.9954 | 31565 | 9 |
0.0004 | 0.9938 | 32200 | 13 |
0.0005 | 0.9922 | 32692 | 16 |
0.0006 | 0.9906 | 33097 | 20 |
0.0007 | 0.9891 | 33446 | 23 |
0.0008 | 0.9875 | 33749 | 27 |
0.0009 | 0.9860 | 34019 | 31 |
0.0010 | 0.9845 | 34264 | 34 |
0.0015 | 0.9768 | 35221 | 53 |
0.0020 | 0.9697 | 35917 | 72 |
0.0025 | 0.9626 | 36474 | 91 |
0.0030 | 0.9553 | 36936 | 111 |
0.0040 | 0.9402 | 37662 | 151 |
0.0050 | 0.9266 | 38236 | 192 |
0.0060 | 0.9131 | 38712 | 234 |
0.0070 | 0.8997 | 39122 | 276 |
0.0080 | 0.8873 | 39479 | 319 |
0.0090 | 0.8752 | 39799 | 362 |
0.0100 | 0.8622 | 40088 | 405 |
0.0150 | 0.8000 | 41201 | 628 |
0.0200 | 0.7398 | 41972 | 857 |
0.0250 | 0.6849 | 42556 | 1092 |
0.0300 | 0.6005 | 42991 | 1330 |
0.0400 | 0.4517 | 43525 | 1814 |
0.0500 | 0.3387 | 43847 | 2309 |
0.0750 | 0.1743 | 44271 | 3591 |
0.1000 | 0.0983 | 44482 | 4943 |
+2 only | |||
0.0000 | 1.0000 | 4629 | 0 |
0.0001 | 0.9987 | 16117 | 2 |
0.0002 | 0.9974 | 17086 | 3 |
0.0003 | 0.9960 | 17659 | 5 |
0.0004 | 0.9946 | 18071 | 7 |
0.0005 | 0.9931 | 18388 | 9 |
0.0006 | 0.9916 | 18647 | 11 |
0.0007 | 0.9903 | 18869 | 13 |
0.0008 | 0.9890 | 19065 | 15 |
0.0009 | 0.9875 | 19239 | 17 |
0.0010 | 0.9862 | 19396 | 19 |
0.0015 | 0.9792 | 20014 | 30 |
0.0020 | 0.9727 | 20459 | 41 |
0.0025 | 0.9666 | 20816 | 52 |
0.0030 | 0.9602 | 21115 | 64 |
0.0040 | 0.9459 | 21592 | 87 |
0.0050 | 0.9328 | 21960 | 110 |
0.0060 | 0.9203 | 22264 | 135 |
0.0070 | 0.9089 | 22526 | 159 |
0.0080 | 0.8970 | 22756 | 184 |
0.0090 | 0.8835 | 22959 | 209 |
0.0100 | 0.8722 | 23141 | 234 |
0.0150 | 0.8134 | 23846 | 363 |
0.0200 | 0.7495 | 24326 | 497 |
0.0250 | 0.6851 | 24674 | 633 |
0.0300 | 0.5978 | 24925 | 771 |
0.0400 | 0.4275 | 25218 | 1052 |
0.0500 | 0.3030 | 25383 | 1337 |
0.0750 | 0.1500 | 25585 | 2076 |
0.1000 | 0.0788 | 25683 | 2855 |
+3 only | |||
0.0000 | 1.0000 | 2777 | 0 |
0.0001 | 0.9980 | 11000 | 1 |
0.0002 | 0.9961 | 11424 | 2 |
0.0003 | 0.9941 | 11674 | 4 |
0.0004 | 0.9919 | 11851 | 5 |
0.0005 | 0.9899 | 11989 | 6 |
0.0006 | 0.9878 | 12102 | 7 |
0.0007 | 0.9859 | 12197 | 9 |
0.0008 | 0.9837 | 12281 | 10 |
0.0009 | 0.9818 | 12355 | 11 |
0.0010 | 0.9800 | 12423 | 12 |
0.0015 | 0.9714 | 12691 | 19 |
0.0020 | 0.9624 | 12889 | 26 |
0.0025 | 0.9529 | 13045 | 33 |
0.0030 | 0.9447 | 13174 | 40 |
0.0040 | 0.9282 | 13384 | 54 |
0.0050 | 0.9128 | 13551 | 68 |
0.0060 | 0.8970 | 13690 | 83 |
0.0070 | 0.8845 | 13809 | 98 |
0.0080 | 0.8718 | 13917 | 112 |
0.0090 | 0.8573 | 14013 | 127 |
0.0100 | 0.8426 | 14098 | 143 |
0.0150 | 0.7764 | 14429 | 220 |
0.0200 | 0.7281 | 14670 | 300 |
0.0250 | 0.6837 | 14867 | 382 |
0.0300 | 0.5923 | 15017 | 465 |
0.0400 | 0.4630 | 15205 | 634 |
0.0500 | 0.3622 | 15326 | 808 |
0.0750 | 0.1988 | 15495 | 1257 |
0.1000 | 0.1126 | 15581 | 1733 |
+4 only | |||
0.0000 | 1.0000 | 492 | 0 |
0.0001 | 0.9984 | 1860 | 0 |
0.0002 | 0.9968 | 1947 | 0 |
0.0003 | 0.9955 | 2002 | 1 |
0.0004 | 0.9942 | 2044 | 1 |
0.0005 | 0.9927 | 2078 | 1 |
0.0006 | 0.9914 | 2107 | 1 |
0.0007 | 0.9895 | 2130 | 2 |
0.0008 | 0.9881 | 2151 | 2 |
0.0009 | 0.9867 | 2169 | 2 |
0.0010 | 0.9855 | 2186 | 2 |
0.0015 | 0.9773 | 2252 | 3 |
0.0020 | 0.9672 | 2294 | 5 |
0.0025 | 0.9596 | 2327 | 6 |
0.0030 | 0.9481 | 2353 | 7 |
0.0040 | 0.9370 | 2394 | 10 |
0.0050 | 0.9250 | 2429 | 12 |
0.0060 | 0.9076 | 2457 | 15 |
0.0070 | 0.8927 | 2481 | 18 |
0.0080 | 0.8845 | 2503 | 20 |
0.0090 | 0.8742 | 2523 | 23 |
0.0100 | 0.8606 | 2540 | 26 |
0.0150 | 0.8035 | 2611 | 40 |
0.0200 | 0.7496 | 2663 | 55 |
0.0250 | 0.6878 | 2701 | 70 |
0.0300 | 0.6273 | 2730 | 85 |
0.0400 | 0.5151 | 2772 | 116 |
0.0500 | 0.4197 | 2799 | 148 |
0.0750 | 0.2664 | 2841 | 232 |
0.1000 | 0.1616 | 2864 | 320 |
+5 only | |||
0.0000 | 1.0000 | 65 | 0 |
0.0001 | 0.9993 | 164 | 0 |
0.0002 | 0.9985 | 185 | 0 |
0.0003 | 0.9974 | 195 | 0 |
0.0004 | 0.9962 | 201 | 0 |
0.0005 | 0.9943 | 206 | 0 |
0.0006 | 0.9935 | 210 | 0 |
0.0007 | 0.9926 | 213 | 0 |
0.0008 | 0.9922 | 216 | 0 |
0.0009 | 0.9918 | 219 | 0 |
0.0010 | 0.9912 | 222 | 0 |
0.0015 | 0.9879 | 234 | 0 |
0.0020 | 0.9838 | 242 | 1 |
0.0025 | 0.9802 | 250 | 1 |
0.0030 | 0.9749 | 257 | 1 |
0.0040 | 0.9650 | 267 | 1 |
0.0050 | 0.9538 | 274 | 1 |
0.0060 | 0.9456 | 279 | 2 |
0.0070 | 0.9282 | 284 | 2 |
0.0080 | 0.9181 | 288 | 2 |
0.0090 | 0.9073 | 291 | 3 |
0.0100 | 0.8948 | 294 | 3 |
0.0150 | 0.8392 | 305 | 5 |
0.0200 | 0.7569 | 312 | 7 |
0.0250 | 0.7183 | 317 | 8 |
0.0300 | 0.6611 | 321 | 10 |
0.0400 | 0.5981 | 327 | 14 |
0.0500 | 0.4744 | 331 | 18 |
0.0750 | 0.3399 | 337 | 29 |
0.1000 | 0.2600 | 342 | 39 |
peptideprophet | |
---|---|
time | 2017-02-20T12:58:13 |
author | AKeller@ISB |
est_tot_num_correct | 44727.0 |
min_prob | 0.90 |
options | DECOY=DECOY_ MINPROB=0.9 ACCMASS |
type | unlinked |
version | PeptideProphet (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
inputfile | /home/sean/Documents/proteome/20161205_Sample_19A.pep.xml |
database_refresh | |
time | 2017-02-20T12:58:01 |
interact | |
time | 2017-02-20T12:57:20 |
directory | /home/sean/Documents/proteome |
filename | /home/sean/Documents/proteome/interact-20161205_Sample_19A.pep.xml |
directory | /home/sean/Documents/proteome |
inputfile | 20161205_Sample_19A.pep.xml |
tpp_models | |
time | Mon Feb 20 13:00:51 2017 |