| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.28 | 0.040 | 0.445 | 0.09 |
| 1 | 0.28 < nsp <= 0.91 | 0.036 | 0.158 | 0.23 |
| 2 | 0.91 < nsp <= 1.62 | 0.061 | 0.090 | 0.68 |
| 3 | 1.62 < nsp <= 2.63 | 0.079 | 0.091 | 0.87 |
| 4 | 2.63 < nsp <= 3.98 | 0.091 | 0.061 | 1.50 |
| 5 | 3.98 < nsp <= 5.99 | 0.105 | 0.047 | 2.22 |
| 6 | 5.99 < nsp <= 8.94 | 0.120 | 0.041 | 2.95 |
| 7 | 8.94 < nsp <= 14.84 | 0.142 | 0.029 | 4.98 |
| 8 | 14.84 < nsp <= 26.83 | 0.155 | 0.020 | 7.58 |
| 9 | 26.83 < nsp < inf | 0.172 | 0.019 | 9.19 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.443 | 0.000 | 1841 | 0 |
| 0.99 | 0.692 | 0.000 | 2880 | 0 |
| 0.98 | 0.857 | 0.002 | 3565 | 9 |
| 0.97 | 0.875 | 0.003 | 3639 | 10 |
| 0.96 | 0.884 | 0.003 | 3675 | 12 |
| 0.95 | 0.890 | 0.003 | 3701 | 13 |
| 0.90 | 0.911 | 0.005 | 3790 | 20 |
| 0.80 | 0.938 | 0.010 | 3901 | 39 |
| 0.70 | 0.957 | 0.016 | 3978 | 65 |
| 0.60 | 0.974 | 0.025 | 4053 | 104 |
| 0.50 | 0.990 | 0.037 | 4119 | 159 |
| 0.40 | 1.000 | 0.047 | 4159 | 203 |
| 0.30 | 1.000 | 0.047 | 4159 | 203 |
| 0.20 | 1.000 | 0.047 | 4159 | 203 |
| 0.10 | 1.000 | 0.047 | 4159 | 203 |
| 0.00 | 1.000 | 0.047 | 4159 | 203 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1841 | 0 |
| 0.0016 | 0.9889 | 3349 | 5 |
| 0.0020 | 0.9867 | 3465 | 7 |
| 0.0025 | 0.9780 | 3583 | 9 |
| 0.0030 | 0.9673 | 3655 | 11 |
| 0.0040 | 0.9385 | 3738 | 15 |
| 0.0050 | 0.9074 | 3785 | 19 |
| 0.0061 | 0.8808 | 3821 | 23 |
| 0.0070 | 0.8581 | 3846 | 27 |
| 0.0080 | 0.8373 | 3869 | 31 |
| 0.0090 | 0.8197 | 3888 | 35 |
| 0.0100 | 0.7953 | 3905 | 40 |
| 0.0151 | 0.7099 | 3969 | 61 |
| 0.0200 | 0.6576 | 4016 | 82 |
| 0.0250 | 0.6001 | 4053 | 104 |
| 0.0300 | 0.5551 | 4084 | 126 |
| 0.0400 | 0.4823 | 4133 | 172 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 22867 |
| num_input_3_spectra | 13746 |
| num_input_4_spectra | 2482 |
| num_input_5_spectra | 294 |
| num_predicted_correct_prots | 4159.1 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_19A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_19A.pep.xml |
| total_no_spectrum_ids | 39026.8 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:00:43 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 5 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:00:52 2017 |