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Predicted Sensitivity and Error Rate

Learned NSP distributions

bin_number	nsp_range	pos_freq	neg_freq	pos/neg_ratio
Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
0	0.00 < nsp <= 0.26	0.040	0.377	0.11
1	0.26 < nsp <= 0.85	0.035	0.161	0.21
2	0.85 < nsp <= 1.56	0.060	0.126	0.47
3	1.56 < nsp <= 2.50	0.074	0.141	0.52
4	2.50 < nsp <= 3.74	0.086	0.075	1.15
5	3.74 < nsp <= 5.90	0.109	0.038	2.86
6	5.90 < nsp <= 8.89	0.128	0.026	4.99
7	8.89 < nsp <= 14.51	0.144	0.023	6.21
8	14.51 < nsp <= 23.99	0.154	0.017	9.15
9	23.99 < nsp < inf	0.171	0.016	10.62

min_prob	Sensitivity	Error_Rate	num_correct	num_incorrect
Predicted Sensitivity and Error Rate
1.00	0.426	0.000	1826	0
0.99	0.806	0.001	3453	5
0.98	0.867	0.002	3715	8
0.97	0.883	0.003	3783	10
0.96	0.895	0.003	3832	12
0.95	0.901	0.003	3862	13
0.90	0.924	0.005	3960	21
0.80	0.948	0.009	4063	38
0.70	0.966	0.015	4140	64
0.60	0.984	0.024	4217	105
0.50	0.998	0.035	4274	153
0.40	1.000	0.037	4284	163
0.30	1.000	0.037	4284	163
0.20	1.000	0.037	4284	163
0.10	1.000	0.037	4284	163
0.00	1.000	0.037	4284	163

Error_Rate	min_prob	num_correct	num_incorrect
Error Table
0.0000	1.0000	1826	0
0.0014	0.9908	3448	5
0.0017	0.9898	3546	6
0.0020	0.9853	3661	7
0.0025	0.9736	3766	10
0.0031	0.9605	3832	12
0.0040	0.9351	3903	16
0.0050	0.9031	3952	20
0.0060	0.8810	3987	24
0.0070	0.8550	4015	28
0.0080	0.8329	4037	33
0.0090	0.8061	4057	37
0.0100	0.7904	4075	41
0.0150	0.7056	4139	63
0.0201	0.6383	4184	86
0.0250	0.5941	4221	108
0.0301	0.5421	4251	132

protein_summary_header
initial_min_peptide_prob	0.05
min_peptide_probability	0.20
min_peptide_weight	0.50
num_input_1_spectra	0
num_input_2_spectra	21296
num_input_3_spectra	14386
num_input_4_spectra	2767
num_input_5_spectra	337
num_predicted_correct_prots	4284.1
reference_database	Cg-Giga_cont_AA.fa
residue_substitution_list	I -> L
sample_enzyme	trypsin
source_files	/home/sean/Documents/proteome/interact-20161205_Sample_1A.pep.xml
source_files_alt	/home/sean/Documents/proteome/interact-20161205_Sample_1A.pep.xml
total_no_spectrum_ids	38439.8
program_details
analysis	proteinprophet
time	2017-02-20T13:07:25
version	Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flag	Y
final_peptide_wt_iters	5
fpkm_flag	N
groups_flag	Y
initial_peptide_wt_iters	2
nsp_distribution_iters	9
nsp_flag	Y
occam_flag	Y
tpp_models
time	Mon Feb 20 13:07:34 2017

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