| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.28 | 0.038 | 0.425 | 0.09 |
| 1 | 0.28 < nsp <= 0.89 | 0.035 | 0.169 | 0.21 |
| 2 | 0.89 < nsp <= 1.61 | 0.058 | 0.101 | 0.57 |
| 3 | 1.61 < nsp <= 2.64 | 0.077 | 0.095 | 0.81 |
| 4 | 2.64 < nsp <= 3.93 | 0.091 | 0.065 | 1.41 |
| 5 | 3.93 < nsp <= 6.01 | 0.114 | 0.054 | 2.11 |
| 6 | 6.01 < nsp <= 8.98 | 0.122 | 0.038 | 3.25 |
| 7 | 8.98 < nsp <= 14.94 | 0.142 | 0.025 | 5.61 |
| 8 | 14.94 < nsp <= 28.17 | 0.155 | 0.015 | 10.45 |
| 9 | 28.17 < nsp < inf | 0.168 | 0.014 | 12.37 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.438 | 0.000 | 1780 | 0 |
| 0.99 | 0.695 | 0.000 | 2824 | 0 |
| 0.98 | 0.858 | 0.002 | 3484 | 8 |
| 0.97 | 0.876 | 0.003 | 3560 | 10 |
| 0.96 | 0.884 | 0.003 | 3591 | 11 |
| 0.95 | 0.891 | 0.003 | 3618 | 13 |
| 0.90 | 0.910 | 0.005 | 3694 | 19 |
| 0.80 | 0.939 | 0.010 | 3813 | 39 |
| 0.70 | 0.958 | 0.017 | 3892 | 66 |
| 0.60 | 0.976 | 0.026 | 3964 | 104 |
| 0.50 | 0.991 | 0.037 | 4027 | 157 |
| 0.40 | 1.000 | 0.046 | 4062 | 195 |
| 0.30 | 1.000 | 0.046 | 4062 | 195 |
| 0.20 | 1.000 | 0.046 | 4062 | 195 |
| 0.10 | 1.000 | 0.046 | 4062 | 195 |
| 0.00 | 1.000 | 0.046 | 4062 | 195 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1780 | 0 |
| 0.0001 | 0.9905 | 2822 | 0 |
| 0.0016 | 0.9890 | 3273 | 5 |
| 0.0021 | 0.9857 | 3417 | 7 |
| 0.0026 | 0.9771 | 3514 | 9 |
| 0.0030 | 0.9644 | 3577 | 11 |
| 0.0040 | 0.9311 | 3651 | 15 |
| 0.0050 | 0.9007 | 3694 | 19 |
| 0.0060 | 0.8781 | 3725 | 23 |
| 0.0070 | 0.8600 | 3751 | 27 |
| 0.0081 | 0.8392 | 3774 | 31 |
| 0.0090 | 0.8201 | 3793 | 35 |
| 0.0101 | 0.8018 | 3811 | 39 |
| 0.0151 | 0.7152 | 3877 | 60 |
| 0.0200 | 0.6594 | 3923 | 80 |
| 0.0250 | 0.6052 | 3959 | 102 |
| 0.0301 | 0.5595 | 3990 | 124 |
| 0.0401 | 0.4837 | 4039 | 168 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 21841 |
| num_input_3_spectra | 14190 |
| num_input_4_spectra | 2745 |
| num_input_5_spectra | 305 |
| num_predicted_correct_prots | 4061.8 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_20.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_20.pep.xml |
| total_no_spectrum_ids | 38716.2 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:17:33 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:17:42 2017 |