| +1 Models | |
|---|---|
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: 1.00 | |
| pos model | gaussian (mean 2.00, stdev 0.40) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010718 |
| pos_bandwidth | 0.010718 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| +2 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 24965.3 |
| num_iterations | 27 |
| prior_probability | 0.690 |
| tot_num_spectra | 46465 |
| Comet discrim score [fval] negmean: -2.01 | |
| pos model | gaussian (mean 3.07, stdev 2.11) |
| neg model | gaussian (mean -0.93, stdev 1.07) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.001, ntt=1 0.025, ntt=2 0.975) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.941, 1<=nmc<=2 0.059, nmc>=3 0.000) |
| neg model | (nmc=0 0.485, 1<=nmc<=2 0.514, nmc>=3 0.002) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010718 |
| pos_bandwidth | 0.010718 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.029, 0 0.857, 1 0.103, 2 0.011, 3 0.000) |
| neg model | (-3 0.000, -2 0.000, -1 0.307, 0 0.313, 1 0.162, 2 0.119, 3 0.099) |
| +3 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 15556.5 |
| num_iterations | 26 |
| prior_probability | 0.587 |
| tot_num_spectra | 36514 |
| Comet discrim score [fval] negmean: -1.59 | |
| pos model | gaussian (mean 4.25, stdev 2.48) |
| neg model | gaussian (mean -0.51, stdev 1.08) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.020, ntt=2 0.980) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.834, 1<=nmc<=2 0.166, nmc>=3 0.000) |
| neg model | (nmc=0 0.291, 1<=nmc<=2 0.701, nmc>=3 0.008) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010718 |
| pos_bandwidth | 0.010718 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.020, 0 0.782, 1 0.147, 2 0.044, 3 0.007) |
| neg model | (-3 0.000, -2 0.000, -1 0.239, 0 0.227, 1 0.196, 2 0.175, 3 0.162) |
| +4 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 2879.1 |
| num_iterations | 27 |
| prior_probability | 0.513 |
| tot_num_spectra | 8199 |
| Comet discrim score [fval] negmean: -2.01 | |
| pos model | gaussian (mean 2.03, stdev 1.53) |
| neg model | gaussian (mean -1.21, stdev 0.80) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.000, ntt=1 0.021, ntt=2 0.979) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.705, 1<=nmc<=2 0.295, nmc>=3 0.000) |
| neg model | (nmc=0 0.196, 1<=nmc<=2 0.784, nmc>=3 0.020) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010718 |
| pos_bandwidth | 0.010718 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.014, 0 0.820, 1 0.133, 2 0.031, 3 0.003) |
| neg model | (-3 0.000, -2 0.000, -1 0.225, 0 0.225, 1 0.205, 2 0.180, 3 0.165) |
| +5 Models | |
| comments | using no. tolerable trypsin term. [ntt] 0 data as pseudonegatives |
| est_tot_correct | 360.0 |
| num_iterations | 27 |
| prior_probability | 0.321 |
| tot_num_spectra | 1830 |
| Comet discrim score [fval] negmean: -2.87 | |
| pos model | gaussian (mean 2.04, stdev 1.51) |
| neg model | gaussian (mean -1.71, stdev 1.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.000, ntt=1 0.000, ntt=2 1.000) |
| neg model | (ntt=0 0.001, ntt=1 0.023, ntt=2 0.976) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.588, 1<=nmc<=2 0.411, nmc>=3 0.000) |
| neg model | (nmc=0 0.149, 1<=nmc<=2 0.826, nmc>=3 0.024) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010718 |
| pos_bandwidth | 0.010718 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.000, -2 0.000, -1 0.006, 0 0.851, 1 0.131, 2 0.011, 3 0.001) |
| neg model | (-3 0.000, -2 0.000, -1 0.202, 0 0.211, 1 0.207, 2 0.199, 3 0.181) |
| +6 Models | |
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: -5.00 | |
| pos model | gaussian (mean 4.56, stdev 1.24) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010718 |
| pos_bandwidth | 0.010718 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| +7 Models | |
| comments | using training data negative distributions |
| est_tot_correct | 0.0 |
| num_iterations | 21 |
| prior_probability | 0.000 |
| tot_num_spectra | 0 |
| Comet discrim score [fval] negmean: -5.00 | |
| pos model | gaussian (mean 4.56, stdev 1.24) |
| neg model | gaussian (mean 0.00, stdev 3.16) |
| no. tolerable trypsin term. [ntt] | |
| pos model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| neg model | (ntt=0 0.333, ntt=1 0.333, ntt=2 0.333) |
| no. missed enz. cleavages [nmc] | |
| pos model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| neg model | (nmc=0 0.333, 1<=nmc<=2 0.333, nmc>=3 0.333) |
| Accurate Mass Model | |
| neg_bandwidth | 0.010718 |
| pos_bandwidth | 0.010718 |
| isotopic peak mass difference [IsoMassDiff] | |
| pos model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| neg model | (-3 0.143, -2 0.143, -1 0.143, 0 0.143, 1 0.143, 2 0.143, 3 0.143) |
| MS run: /home/sean/Documents/proteome/20161205_Sample_20A | |
|---|---|
| msManufacturer | Thermo |
| msModel | Orbitrap Fusion Lumos |
| raw_data | .mzXML |
| raw_data_type | raw |
| sample_enzyme | |
| name | trypsin |
| specificity | cut: KR no_cut: P sense: C |
| search_summary | |
| base_name | /home/sean/Documents/proteome/20161205_Sample_20A |
| fragment_mass_type | monoisotopic |
| precursor_mass_type | monoisotopic |
| search_engine | Comet |
| search_engine_version | 2016.01 rev. 2 |
| search_id | 1 |
| search_database | |
| local_path | Cg-Giga_cont_AA.fa |
| type | AA |
| enzymatic_search_constraint | |
| enzyme | Trypsin |
| max_num_internal_cleavages | 2 |
| min_number_termini | 2 |
| Aminoacid and Terminal Modifications | |
| M | mass: 147.035385 massdiff: 15.994900 symbol: * variable: Y |
| C | mass: 160.030649 massdiff: 57.021464 variable: N |
| Search Parameters | |
| # comet_version | 2016.01 rev. 0 |
| activation_method | ALL |
| add_A_alanine | 0.000000 |
| add_B_user_amino_acid | 0.000000 |
| add_C_cysteine | 57.021464 |
| add_Cterm_peptide | 0.000000 |
| add_Cterm_protein | 0.000000 |
| add_D_aspartic_acid | 0.000000 |
| add_E_glutamic_acid | 0.000000 |
| add_F_phenylalanine | 0.000000 |
| add_G_glycine | 0.000000 |
| add_H_histidine | 0.000000 |
| add_I_isoleucine | 0.000000 |
| add_J_user_amino_acid | 0.000000 |
| add_K_lysine | 0.000000 |
| add_L_leucine | 0.000000 |
| add_M_methionine | 0.000000 |
| add_N_asparagine | 0.000000 |
| add_Nterm_peptide | 0.000000 |
| add_Nterm_protein | 0.000000 |
| add_O_ornithine | 0.000000 |
| add_P_proline | 0.000000 |
| add_Q_glutamine | 0.000000 |
| add_R_arginine | 0.000000 |
| add_S_serine | 0.000000 |
| add_T_threonine | 0.000000 |
| add_U_celenocysteinee | 0.000000 |
| add_V_valine | 0.000000 |
| add_W_tryptophan | 0.000000 |
| add_X_user_amino_acid | 0.000000 |
| add_Y_tyrosine | 0.000000 |
| add_Z_user_amino_acid | 0.000000 |
| allowed_missed_cleavage | 2 |
| clear_mz_range | 0.000000 0.000000 |
| clip_nterm_methionine | 0 |
| database_name | Cg-Giga_cont_AA.fa |
| decoy_prefix | DECOY_ |
| decoy_search | 1 |
| digest_mass_range | 600.000000 5000.000000 |
| fragment_bin_offset | 0.400000 |
| fragment_bin_tol | 1.000500 |
| isotope_error | 1 |
| mass_offsets | |
| mass_type_fragment | 1 |
| mass_type_parent | 1 |
| max_fragment_charge | 3 |
| max_precursor_charge | 6 |
| max_variable_mods_in_peptide | 5 |
| minimum_intensity | 0 |
| minimum_peaks | 10 |
| ms_level | 2 |
| nucleotide_reading_frame | 0 |
| num_enzyme_termini | 2 |
| num_output_lines | 5 |
| num_results | 100 |
| num_threads | 8 |
| output_outfiles | 0 |
| output_pepxmlfile | 1 |
| output_percolatorfile | 0 |
| output_sqtfile | 0 |
| output_sqtstream | 0 |
| output_suffix | |
| output_txtfile | 0 |
| override_charge | 0 |
| peptide_mass_tolerance | 20.000000 |
| peptide_mass_units | 2 |
| precursor_charge | 0 0 |
| precursor_tolerance_type | 1 |
| print_expect_score | 1 |
| remove_precursor_peak | 0 |
| remove_precursor_tolerance | 1.500000 |
| require_variable_mod | 0 |
| sample_enzyme_number | 1 |
| scan_range | 0 0 |
| search_enzyme_number | 1 |
| show_fragment_ions | 0 |
| skip_researching | 1 |
| spectrum_batch_size | 0 |
| theoretical_fragment_ions | 1 |
| use_A_ions | 0 |
| use_B_ions | 1 |
| use_C_ions | 0 |
| use_NL_ions | 0 |
| use_X_ions | 0 |
| use_Y_ions | 1 |
| use_Z_ions | 0 |
| variable_mod01 | 15.994900 M 0 3 -1 0 0 |
| variable_mod02 | 0.000000 X 0 3 -1 0 0 |
| variable_mod03 | 0.000000 X 0 3 -1 0 0 |
| variable_mod04 | 0.000000 X 0 3 -1 0 0 |
| variable_mod05 | 0.000000 X 0 3 -1 0 0 |
| variable_mod06 | 0.000000 X 0 3 -1 0 0 |
| variable_mod07 | 0.000000 X 0 3 -1 0 0 |
| variable_mod08 | 0.000000 X 0 3 -1 0 0 |
| variable_mod09 | 0.000000 X 0 3 -1 0 0 |
| Analysis Timestamps | |
| peptideprophet | 2017-02-20T13:11:45 (id: 1) |
| database_refresh | 2017-02-20T13:11:34 (id: 1) |
| database | Cg-Giga_cont_AA.fa |
| min_num_enz_term | 0 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 0.9999 | 0.5705 | 0.0000 | 24967 | 0 |
| 0.9990 | 0.6535 | 0.0001 | 28596 | 2 |
| 0.9900 | 0.7539 | 0.0006 | 32993 | 20 |
| 0.9800 | 0.7894 | 0.0012 | 34546 | 43 |
| 0.9500 | 0.8379 | 0.0032 | 36669 | 116 |
| 0.9000 | 0.8790 | 0.0067 | 38465 | 258 |
| 0.8500 | 0.9041 | 0.0103 | 39564 | 413 |
| 0.8000 | 0.9217 | 0.0141 | 40334 | 575 |
| 0.7500 | 0.9360 | 0.0182 | 40962 | 757 |
| 0.7000 | 0.9480 | 0.0225 | 41486 | 956 |
| 0.6500 | 0.9565 | 0.0264 | 41856 | 1134 |
| 0.6000 | 0.9624 | 0.0297 | 42113 | 1288 |
| 0.5500 | 0.9669 | 0.0328 | 42313 | 1436 |
| 0.5000 | 0.9705 | 0.0358 | 42471 | 1577 |
| 0.4500 | 0.9739 | 0.0392 | 42617 | 1738 |
| 0.4000 | 0.9770 | 0.0431 | 42756 | 1927 |
| 0.3500 | 0.9802 | 0.0479 | 42894 | 2157 |
| 0.3000 | 0.9831 | 0.0533 | 43020 | 2421 |
| 0.2500 | 0.9856 | 0.0593 | 43131 | 2717 |
| 0.2000 | 0.9884 | 0.0677 | 43255 | 3139 |
| 0.1500 | 0.9915 | 0.0800 | 43388 | 3773 |
| 0.1000 | 0.9946 | 0.0981 | 43524 | 4735 |
| 0.0500 | 0.9973 | 0.1254 | 43643 | 6258 |
| 0.0000 | 1.0000 | 0.5295 | 43761 | 49247 |
| +2 only | ||||
| 0.9999 | 0.5474 | 0.0000 | 13666 | 0 |
| 0.9990 | 0.6398 | 0.0001 | 15974 | 1 |
| 0.9900 | 0.7493 | 0.0007 | 18706 | 12 |
| 0.9800 | 0.7891 | 0.0014 | 19699 | 27 |
| 0.9500 | 0.8431 | 0.0035 | 21048 | 74 |
| 0.9000 | 0.8866 | 0.0072 | 22135 | 160 |
| 0.8500 | 0.9128 | 0.0109 | 22788 | 252 |
| 0.8000 | 0.9309 | 0.0147 | 23239 | 347 |
| 0.7500 | 0.9451 | 0.0187 | 23595 | 449 |
| 0.7000 | 0.9568 | 0.0229 | 23888 | 560 |
| 0.6500 | 0.9634 | 0.0259 | 24052 | 639 |
| 0.6000 | 0.9690 | 0.0290 | 24190 | 722 |
| 0.5500 | 0.9729 | 0.0317 | 24289 | 795 |
| 0.5000 | 0.9756 | 0.0339 | 24357 | 854 |
| 0.4500 | 0.9785 | 0.0368 | 24428 | 934 |
| 0.4000 | 0.9812 | 0.0402 | 24495 | 1025 |
| 0.3500 | 0.9840 | 0.0444 | 24565 | 1141 |
| 0.3000 | 0.9861 | 0.0484 | 24618 | 1253 |
| 0.2500 | 0.9881 | 0.0532 | 24668 | 1385 |
| 0.2000 | 0.9903 | 0.0598 | 24723 | 1574 |
| 0.1500 | 0.9927 | 0.0697 | 24783 | 1857 |
| 0.1000 | 0.9955 | 0.0863 | 24852 | 2347 |
| 0.0500 | 0.9979 | 0.1109 | 24912 | 3106 |
| 0.0000 | 1.0000 | 0.4627 | 24965 | 21500 |
| +3 only | ||||
| 0.9999 | 0.6145 | 0.0000 | 9559 | 0 |
| 0.9990 | 0.6812 | 0.0001 | 10597 | 1 |
| 0.9900 | 0.7657 | 0.0005 | 11911 | 6 |
| 0.9800 | 0.7958 | 0.0010 | 12380 | 13 |
| 0.9500 | 0.8347 | 0.0026 | 12985 | 34 |
| 0.9000 | 0.8710 | 0.0058 | 13551 | 78 |
| 0.8500 | 0.8944 | 0.0092 | 13913 | 129 |
| 0.8000 | 0.9119 | 0.0130 | 14186 | 187 |
| 0.7500 | 0.9260 | 0.0171 | 14405 | 251 |
| 0.7000 | 0.9388 | 0.0219 | 14605 | 326 |
| 0.6500 | 0.9503 | 0.0272 | 14783 | 413 |
| 0.6000 | 0.9563 | 0.0305 | 14876 | 469 |
| 0.5500 | 0.9613 | 0.0340 | 14954 | 526 |
| 0.5000 | 0.9658 | 0.0378 | 15025 | 590 |
| 0.4500 | 0.9695 | 0.0415 | 15082 | 653 |
| 0.4000 | 0.9731 | 0.0460 | 15138 | 729 |
| 0.3500 | 0.9767 | 0.0514 | 15194 | 823 |
| 0.3000 | 0.9803 | 0.0581 | 15250 | 940 |
| 0.2500 | 0.9832 | 0.0648 | 15295 | 1060 |
| 0.2000 | 0.9866 | 0.0747 | 15348 | 1239 |
| 0.1500 | 0.9904 | 0.0897 | 15406 | 1519 |
| 0.1000 | 0.9937 | 0.1089 | 15459 | 1890 |
| 0.0500 | 0.9967 | 0.1388 | 15506 | 2498 |
| 0.0000 | 1.0000 | 0.5740 | 15557 | 20957 |
| +4 only | ||||
| 0.9999 | 0.5637 | 0.0000 | 1623 | 0 |
| 0.9990 | 0.6463 | 0.0001 | 1861 | 0 |
| 0.9900 | 0.7449 | 0.0006 | 2145 | 1 |
| 0.9800 | 0.7723 | 0.0011 | 2224 | 2 |
| 0.9500 | 0.8213 | 0.0031 | 2365 | 7 |
| 0.9000 | 0.8648 | 0.0069 | 2490 | 17 |
| 0.8500 | 0.8903 | 0.0107 | 2563 | 28 |
| 0.8000 | 0.9035 | 0.0135 | 2601 | 36 |
| 0.7500 | 0.9207 | 0.0186 | 2651 | 50 |
| 0.7000 | 0.9280 | 0.0213 | 2672 | 58 |
| 0.6500 | 0.9358 | 0.0249 | 2694 | 69 |
| 0.6000 | 0.9435 | 0.0295 | 2717 | 82 |
| 0.5500 | 0.9504 | 0.0342 | 2736 | 97 |
| 0.5000 | 0.9567 | 0.0396 | 2755 | 113 |
| 0.4500 | 0.9616 | 0.0444 | 2768 | 129 |
| 0.4000 | 0.9666 | 0.0505 | 2783 | 148 |
| 0.3500 | 0.9705 | 0.0564 | 2794 | 167 |
| 0.3000 | 0.9751 | 0.0648 | 2807 | 195 |
| 0.2500 | 0.9792 | 0.0742 | 2819 | 226 |
| 0.2000 | 0.9838 | 0.0877 | 2833 | 272 |
| 0.1500 | 0.9885 | 0.1053 | 2846 | 335 |
| 0.1000 | 0.9924 | 0.1263 | 2857 | 413 |
| 0.0500 | 0.9959 | 0.1599 | 2867 | 546 |
| 0.0000 | 1.0000 | 0.6488 | 2879 | 5320 |
| +5 only | ||||
| 0.9999 | 0.3305 | 0.0000 | 119 | 0 |
| 0.9990 | 0.4555 | 0.0001 | 164 | 0 |
| 0.9900 | 0.6436 | 0.0012 | 232 | 0 |
| 0.9800 | 0.6766 | 0.0018 | 244 | 0 |
| 0.9500 | 0.7520 | 0.0047 | 271 | 1 |
| 0.9000 | 0.8036 | 0.0093 | 289 | 3 |
| 0.8500 | 0.8328 | 0.0138 | 300 | 4 |
| 0.8000 | 0.8533 | 0.0186 | 307 | 6 |
| 0.7500 | 0.8642 | 0.0217 | 311 | 7 |
| 0.7000 | 0.8944 | 0.0331 | 322 | 11 |
| 0.6500 | 0.9078 | 0.0388 | 327 | 13 |
| 0.6000 | 0.9165 | 0.0436 | 330 | 15 |
| 0.5500 | 0.9276 | 0.0514 | 334 | 18 |
| 0.5000 | 0.9305 | 0.0537 | 335 | 19 |
| 0.4500 | 0.9399 | 0.0628 | 338 | 23 |
| 0.4000 | 0.9446 | 0.0684 | 340 | 25 |
| 0.3500 | 0.9467 | 0.0714 | 341 | 26 |
| 0.3000 | 0.9565 | 0.0891 | 344 | 34 |
| 0.2500 | 0.9694 | 0.1165 | 349 | 46 |
| 0.2000 | 0.9756 | 0.1328 | 351 | 54 |
| 0.1500 | 0.9805 | 0.1495 | 353 | 62 |
| 0.1000 | 0.9891 | 0.1926 | 356 | 85 |
| 0.0500 | 0.9940 | 0.2321 | 358 | 108 |
| 0.0000 | 1.0000 | 0.8033 | 360 | 1470 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 7783 | 0 |
| 0.0001 | 0.9985 | 29356 | 3 |
| 0.0002 | 0.9968 | 30765 | 6 |
| 0.0003 | 0.9950 | 31583 | 9 |
| 0.0004 | 0.9934 | 32167 | 13 |
| 0.0005 | 0.9917 | 32628 | 16 |
| 0.0006 | 0.9899 | 33003 | 20 |
| 0.0007 | 0.9882 | 33323 | 23 |
| 0.0008 | 0.9867 | 33604 | 27 |
| 0.0009 | 0.9851 | 33854 | 31 |
| 0.0010 | 0.9834 | 34081 | 34 |
| 0.0015 | 0.9753 | 34975 | 53 |
| 0.0020 | 0.9671 | 35616 | 71 |
| 0.0025 | 0.9599 | 36120 | 91 |
| 0.0030 | 0.9524 | 36544 | 110 |
| 0.0040 | 0.9374 | 37228 | 150 |
| 0.0050 | 0.9223 | 37762 | 190 |
| 0.0060 | 0.9086 | 38206 | 231 |
| 0.0070 | 0.8953 | 38589 | 272 |
| 0.0080 | 0.8819 | 38923 | 314 |
| 0.0090 | 0.8688 | 39221 | 356 |
| 0.0100 | 0.8539 | 39487 | 399 |
| 0.0150 | 0.7883 | 40494 | 617 |
| 0.0200 | 0.7291 | 41200 | 841 |
| 0.0250 | 0.6669 | 41734 | 1071 |
| 0.0300 | 0.5934 | 42137 | 1304 |
| 0.0400 | 0.4379 | 42648 | 1778 |
| 0.0500 | 0.3292 | 42948 | 2261 |
| 0.0750 | 0.1686 | 43339 | 3516 |
| 0.1000 | 0.0952 | 43535 | 4839 |
| +2 only | |||
| 0.0000 | 1.0000 | 4459 | 0 |
| 0.0001 | 0.9986 | 16289 | 2 |
| 0.0002 | 0.9972 | 17196 | 3 |
| 0.0003 | 0.9954 | 17714 | 5 |
| 0.0004 | 0.9940 | 18080 | 7 |
| 0.0005 | 0.9924 | 18368 | 9 |
| 0.0006 | 0.9908 | 18603 | 11 |
| 0.0007 | 0.9891 | 18801 | 13 |
| 0.0008 | 0.9878 | 18973 | 15 |
| 0.0009 | 0.9864 | 19130 | 17 |
| 0.0010 | 0.9850 | 19271 | 19 |
| 0.0015 | 0.9778 | 19833 | 30 |
| 0.0020 | 0.9700 | 20236 | 41 |
| 0.0025 | 0.9630 | 20552 | 52 |
| 0.0030 | 0.9566 | 20819 | 63 |
| 0.0040 | 0.9431 | 21252 | 85 |
| 0.0050 | 0.9280 | 21587 | 109 |
| 0.0060 | 0.9147 | 21865 | 132 |
| 0.0070 | 0.9020 | 22101 | 156 |
| 0.0080 | 0.8883 | 22307 | 180 |
| 0.0090 | 0.8760 | 22489 | 204 |
| 0.0100 | 0.8626 | 22652 | 229 |
| 0.0150 | 0.7964 | 23270 | 355 |
| 0.0200 | 0.7349 | 23694 | 484 |
| 0.0250 | 0.6662 | 24008 | 616 |
| 0.0300 | 0.5801 | 24232 | 750 |
| 0.0400 | 0.4036 | 24493 | 1021 |
| 0.0500 | 0.2807 | 24637 | 1298 |
| 0.0750 | 0.1322 | 24808 | 2013 |
| 0.1000 | 0.0702 | 24890 | 2767 |
| +3 only | |||
| 0.0000 | 1.0000 | 2748 | 0 |
| 0.0001 | 0.9980 | 10969 | 1 |
| 0.0002 | 0.9959 | 11365 | 2 |
| 0.0003 | 0.9939 | 11604 | 3 |
| 0.0004 | 0.9918 | 11775 | 5 |
| 0.0005 | 0.9900 | 11911 | 6 |
| 0.0006 | 0.9881 | 12026 | 7 |
| 0.0007 | 0.9860 | 12123 | 9 |
| 0.0008 | 0.9841 | 12208 | 10 |
| 0.0009 | 0.9823 | 12284 | 11 |
| 0.0010 | 0.9807 | 12353 | 12 |
| 0.0015 | 0.9704 | 12621 | 19 |
| 0.0020 | 0.9607 | 12810 | 26 |
| 0.0025 | 0.9524 | 12960 | 33 |
| 0.0030 | 0.9432 | 13086 | 39 |
| 0.0040 | 0.9261 | 13287 | 53 |
| 0.0050 | 0.9108 | 13447 | 68 |
| 0.0060 | 0.8974 | 13583 | 82 |
| 0.0070 | 0.8836 | 13701 | 97 |
| 0.0080 | 0.8697 | 13806 | 112 |
| 0.0090 | 0.8529 | 13899 | 127 |
| 0.0100 | 0.8367 | 13981 | 141 |
| 0.0150 | 0.7739 | 14299 | 218 |
| 0.0200 | 0.7196 | 14532 | 297 |
| 0.0250 | 0.6684 | 14715 | 378 |
| 0.0300 | 0.6077 | 14864 | 460 |
| 0.0400 | 0.4693 | 15061 | 628 |
| 0.0500 | 0.3619 | 15181 | 800 |
| 0.0750 | 0.1990 | 15349 | 1246 |
| 0.1000 | 0.1213 | 15438 | 1716 |
| +4 only | |||
| 0.0000 | 1.0000 | 516 | 0 |
| 0.0001 | 0.9984 | 1907 | 0 |
| 0.0002 | 0.9967 | 1997 | 0 |
| 0.0003 | 0.9949 | 2051 | 1 |
| 0.0004 | 0.9937 | 2090 | 1 |
| 0.0005 | 0.9917 | 2122 | 1 |
| 0.0006 | 0.9900 | 2146 | 1 |
| 0.0007 | 0.9875 | 2165 | 2 |
| 0.0008 | 0.9859 | 2183 | 2 |
| 0.0009 | 0.9837 | 2198 | 2 |
| 0.0010 | 0.9819 | 2212 | 2 |
| 0.0015 | 0.9739 | 2264 | 3 |
| 0.0020 | 0.9657 | 2302 | 5 |
| 0.0025 | 0.9599 | 2334 | 6 |
| 0.0030 | 0.9508 | 2361 | 7 |
| 0.0040 | 0.9391 | 2404 | 10 |
| 0.0050 | 0.9233 | 2440 | 12 |
| 0.0060 | 0.9105 | 2469 | 15 |
| 0.0070 | 0.8983 | 2494 | 18 |
| 0.0080 | 0.8851 | 2517 | 21 |
| 0.0090 | 0.8694 | 2537 | 23 |
| 0.0100 | 0.8561 | 2554 | 26 |
| 0.0150 | 0.7832 | 2619 | 40 |
| 0.0200 | 0.7222 | 2663 | 55 |
| 0.0250 | 0.6475 | 2695 | 70 |
| 0.0300 | 0.5951 | 2720 | 85 |
| 0.0400 | 0.4958 | 2757 | 115 |
| 0.0500 | 0.4052 | 2782 | 148 |
| 0.0750 | 0.2481 | 2820 | 230 |
| 0.1000 | 0.1701 | 2843 | 317 |
| +5 only | |||
| 0.0000 | 1.0000 | 66 | 0 |
| 0.0001 | 0.9993 | 155 | 0 |
| 0.0002 | 0.9987 | 174 | 0 |
| 0.0003 | 0.9980 | 187 | 0 |
| 0.0004 | 0.9974 | 197 | 0 |
| 0.0005 | 0.9964 | 204 | 0 |
| 0.0006 | 0.9957 | 210 | 0 |
| 0.0007 | 0.9940 | 215 | 0 |
| 0.0008 | 0.9933 | 219 | 0 |
| 0.0009 | 0.9931 | 222 | 0 |
| 0.0010 | 0.9926 | 226 | 0 |
| 0.0015 | 0.9875 | 240 | 0 |
| 0.0020 | 0.9786 | 247 | 1 |
| 0.0025 | 0.9760 | 253 | 1 |
| 0.0030 | 0.9719 | 259 | 1 |
| 0.0040 | 0.9590 | 268 | 1 |
| 0.0050 | 0.9488 | 274 | 1 |
| 0.0060 | 0.9360 | 279 | 2 |
| 0.0070 | 0.9239 | 283 | 2 |
| 0.0080 | 0.9146 | 287 | 2 |
| 0.0090 | 0.9048 | 290 | 3 |
| 0.0100 | 0.8852 | 293 | 3 |
| 0.0150 | 0.8375 | 303 | 5 |
| 0.0200 | 0.7734 | 310 | 7 |
| 0.0250 | 0.7314 | 316 | 8 |
| 0.0300 | 0.7125 | 321 | 10 |
| 0.0400 | 0.6329 | 329 | 14 |
| 0.0500 | 0.5567 | 334 | 18 |
| 0.0750 | 0.3326 | 342 | 29 |
| 0.1000 | 0.2799 | 347 | 39 |
| peptideprophet | |
|---|---|
| time | 2017-02-20T13:11:45 |
| author | AKeller@ISB |
| est_tot_num_correct | 43760.9 |
| min_prob | 0.90 |
| options | DECOY=DECOY_ MINPROB=0.9 ACCMASS |
| type | unlinked |
| version | PeptideProphet (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| inputfile | /home/sean/Documents/proteome/20161205_Sample_20A.pep.xml |
| database_refresh | |
| time | 2017-02-20T13:11:34 |
| interact | |
| time | 2017-02-20T13:10:52 |
| directory | /home/sean/Documents/proteome |
| filename | /home/sean/Documents/proteome/interact-20161205_Sample_20A.pep.xml |
| directory | /home/sean/Documents/proteome |
| inputfile | 20161205_Sample_20A.pep.xml |
| tpp_models | |
| time | Mon Feb 20 13:14:14 2017 |