| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.28 | 0.040 | 0.432 | 0.09 |
| 1 | 0.28 < nsp <= 0.87 | 0.035 | 0.176 | 0.20 |
| 2 | 0.87 < nsp <= 1.62 | 0.059 | 0.107 | 0.55 |
| 3 | 1.62 < nsp <= 2.67 | 0.077 | 0.076 | 1.01 |
| 4 | 2.67 < nsp <= 3.92 | 0.092 | 0.057 | 1.60 |
| 5 | 3.92 < nsp <= 5.99 | 0.107 | 0.053 | 2.01 |
| 6 | 5.99 < nsp <= 8.98 | 0.125 | 0.038 | 3.30 |
| 7 | 8.98 < nsp <= 14.98 | 0.143 | 0.024 | 5.89 |
| 8 | 14.98 < nsp <= 27.82 | 0.153 | 0.019 | 8.07 |
| 9 | 27.82 < nsp < inf | 0.169 | 0.017 | 9.65 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.440 | 0.000 | 1803 | 0 |
| 0.99 | 0.690 | 0.000 | 2831 | 0 |
| 0.98 | 0.869 | 0.002 | 3563 | 9 |
| 0.97 | 0.886 | 0.003 | 3632 | 11 |
| 0.96 | 0.895 | 0.003 | 3672 | 12 |
| 0.95 | 0.901 | 0.004 | 3697 | 13 |
| 0.90 | 0.920 | 0.005 | 3772 | 19 |
| 0.80 | 0.944 | 0.009 | 3872 | 37 |
| 0.70 | 0.962 | 0.015 | 3944 | 61 |
| 0.60 | 0.978 | 0.024 | 4010 | 97 |
| 0.50 | 0.993 | 0.035 | 4072 | 148 |
| 0.40 | 1.000 | 0.042 | 4101 | 180 |
| 0.30 | 1.000 | 0.042 | 4101 | 180 |
| 0.20 | 1.000 | 0.042 | 4101 | 180 |
| 0.10 | 1.000 | 0.042 | 4101 | 180 |
| 0.00 | 1.000 | 0.042 | 4101 | 180 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1803 | 0 |
| 0.0017 | 0.9893 | 3335 | 6 |
| 0.0021 | 0.9872 | 3460 | 7 |
| 0.0026 | 0.9799 | 3577 | 9 |
| 0.0030 | 0.9684 | 3643 | 11 |
| 0.0040 | 0.9361 | 3727 | 15 |
| 0.0051 | 0.8983 | 3774 | 19 |
| 0.0060 | 0.8699 | 3803 | 23 |
| 0.0070 | 0.8454 | 3827 | 27 |
| 0.0080 | 0.8259 | 3848 | 31 |
| 0.0090 | 0.8065 | 3866 | 35 |
| 0.0101 | 0.7857 | 3883 | 40 |
| 0.0151 | 0.7016 | 3944 | 60 |
| 0.0201 | 0.6320 | 3987 | 82 |
| 0.0251 | 0.5871 | 4021 | 103 |
| 0.0301 | 0.5386 | 4048 | 126 |
| 0.0400 | 0.4634 | 4093 | 171 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 22295 |
| num_input_3_spectra | 13628 |
| num_input_4_spectra | 2507 |
| num_input_5_spectra | 292 |
| num_predicted_correct_prots | 4101.1 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_20A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_20A.pep.xml |
| total_no_spectrum_ids | 38382.8 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:14:05 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:14:14 2017 |