| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.23 | 0.043 | 0.444 | 0.10 |
| 1 | 0.23 < nsp <= 0.76 | 0.036 | 0.177 | 0.20 |
| 2 | 0.76 < nsp <= 1.40 | 0.058 | 0.103 | 0.56 |
| 3 | 1.40 < nsp <= 2.25 | 0.075 | 0.074 | 1.02 |
| 4 | 2.25 < nsp <= 3.47 | 0.089 | 0.061 | 1.45 |
| 5 | 3.47 < nsp <= 5.32 | 0.106 | 0.052 | 2.04 |
| 6 | 5.32 < nsp <= 7.95 | 0.121 | 0.033 | 3.66 |
| 7 | 7.95 < nsp <= 13.55 | 0.146 | 0.026 | 5.62 |
| 8 | 13.55 < nsp <= 25.39 | 0.158 | 0.017 | 9.52 |
| 9 | 25.39 < nsp < inf | 0.168 | 0.013 | 12.97 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.414 | 0.000 | 1518 | 0 |
| 0.99 | 0.679 | 0.000 | 2489 | 0 |
| 0.98 | 0.856 | 0.002 | 3138 | 8 |
| 0.97 | 0.872 | 0.003 | 3198 | 9 |
| 0.96 | 0.880 | 0.003 | 3227 | 10 |
| 0.95 | 0.889 | 0.004 | 3260 | 12 |
| 0.90 | 0.911 | 0.005 | 3339 | 18 |
| 0.80 | 0.939 | 0.010 | 3442 | 36 |
| 0.70 | 0.960 | 0.017 | 3520 | 62 |
| 0.60 | 0.979 | 0.027 | 3591 | 101 |
| 0.50 | 0.995 | 0.039 | 3649 | 147 |
| 0.40 | 1.000 | 0.044 | 3667 | 167 |
| 0.30 | 1.000 | 0.044 | 3667 | 167 |
| 0.20 | 1.000 | 0.044 | 3667 | 167 |
| 0.10 | 1.000 | 0.044 | 3667 | 167 |
| 0.00 | 1.000 | 0.044 | 3667 | 167 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1518 | 0 |
| 0.0001 | 0.9918 | 2486 | 0 |
| 0.0016 | 0.9897 | 2916 | 5 |
| 0.0020 | 0.9877 | 3036 | 6 |
| 0.0025 | 0.9796 | 3150 | 8 |
| 0.0030 | 0.9667 | 3210 | 10 |
| 0.0040 | 0.9391 | 3283 | 13 |
| 0.0050 | 0.9103 | 3326 | 17 |
| 0.0060 | 0.8880 | 3358 | 20 |
| 0.0071 | 0.8618 | 3383 | 24 |
| 0.0080 | 0.8431 | 3403 | 27 |
| 0.0091 | 0.8229 | 3422 | 31 |
| 0.0101 | 0.8070 | 3439 | 35 |
| 0.0150 | 0.7311 | 3499 | 53 |
| 0.0201 | 0.6668 | 3543 | 73 |
| 0.0252 | 0.6147 | 3579 | 92 |
| 0.0302 | 0.5795 | 3608 | 112 |
| 0.0401 | 0.4914 | 3654 | 152 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 18981 |
| num_input_3_spectra | 10899 |
| num_input_4_spectra | 1983 |
| num_input_5_spectra | 161 |
| num_predicted_correct_prots | 3666.9 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_24.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_24.pep.xml |
| total_no_spectrum_ids | 31718.7 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:23:53 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:24:01 2017 |