| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.20 | 0.043 | 0.485 | 0.09 |
| 1 | 0.20 < nsp <= 0.76 | 0.036 | 0.178 | 0.20 |
| 2 | 0.76 < nsp <= 1.36 | 0.058 | 0.090 | 0.64 |
| 3 | 1.36 < nsp <= 2.28 | 0.075 | 0.066 | 1.14 |
| 4 | 2.28 < nsp <= 3.39 | 0.089 | 0.042 | 2.10 |
| 5 | 3.39 < nsp <= 5.10 | 0.107 | 0.045 | 2.39 |
| 6 | 5.10 < nsp <= 8.06 | 0.128 | 0.040 | 3.18 |
| 7 | 8.06 < nsp <= 13.52 | 0.146 | 0.024 | 6.15 |
| 8 | 13.52 < nsp <= 25.97 | 0.157 | 0.016 | 9.98 |
| 9 | 25.97 < nsp < inf | 0.160 | 0.014 | 11.73 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.426 | 0.000 | 1591 | 0 |
| 0.99 | 0.673 | 0.000 | 2516 | 0 |
| 0.98 | 0.851 | 0.003 | 3182 | 8 |
| 0.97 | 0.865 | 0.003 | 3234 | 10 |
| 0.96 | 0.877 | 0.003 | 3278 | 11 |
| 0.95 | 0.883 | 0.004 | 3302 | 12 |
| 0.90 | 0.908 | 0.006 | 3394 | 20 |
| 0.80 | 0.934 | 0.010 | 3492 | 37 |
| 0.70 | 0.959 | 0.018 | 3582 | 67 |
| 0.60 | 0.975 | 0.027 | 3643 | 100 |
| 0.50 | 0.992 | 0.039 | 3707 | 152 |
| 0.40 | 1.000 | 0.047 | 3737 | 186 |
| 0.30 | 1.000 | 0.047 | 3737 | 186 |
| 0.20 | 1.000 | 0.047 | 3737 | 186 |
| 0.10 | 1.000 | 0.047 | 3737 | 186 |
| 0.00 | 1.000 | 0.047 | 3737 | 186 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1591 | 0 |
| 0.0018 | 0.9889 | 2986 | 5 |
| 0.0020 | 0.9878 | 3049 | 6 |
| 0.0026 | 0.9812 | 3170 | 8 |
| 0.0030 | 0.9705 | 3234 | 10 |
| 0.0040 | 0.9456 | 3318 | 13 |
| 0.0050 | 0.9189 | 3368 | 17 |
| 0.0060 | 0.8945 | 3402 | 21 |
| 0.0071 | 0.8669 | 3431 | 24 |
| 0.0080 | 0.8465 | 3452 | 28 |
| 0.0091 | 0.8262 | 3471 | 32 |
| 0.0100 | 0.8098 | 3487 | 35 |
| 0.0152 | 0.7377 | 3552 | 55 |
| 0.0200 | 0.6697 | 3598 | 73 |
| 0.0252 | 0.6142 | 3634 | 94 |
| 0.0300 | 0.5762 | 3663 | 113 |
| 0.0400 | 0.4964 | 3710 | 155 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 19792 |
| num_input_3_spectra | 10556 |
| num_input_4_spectra | 1728 |
| num_input_5_spectra | 188 |
| num_predicted_correct_prots | 3737.5 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_24A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_24A.pep.xml |
| total_no_spectrum_ids | 31978.4 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:20:47 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 4 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:20:55 2017 |