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Predicted Sensitivity and Error Rate

Learned NSP distributions

bin_number	nsp_range	pos_freq	neg_freq	pos/neg_ratio
Learned Number of Sibling Peptide Distributions
Neighboring bin smoothing: Y
0	0.00 < nsp <= 0.19	0.047	0.490	0.10
1	0.19 < nsp <= 0.69	0.036	0.171	0.21
2	0.69 < nsp <= 1.27	0.059	0.074	0.80
3	1.27 < nsp <= 2.10	0.077	0.066	1.16
4	2.10 < nsp <= 3.02	0.085	0.054	1.57
5	3.02 < nsp <= 4.85	0.098	0.050	1.95
6	4.85 < nsp <= 7.38	0.123	0.038	3.22
7	7.38 < nsp <= 11.98	0.144	0.024	6.03
8	11.98 < nsp <= 23.82	0.162	0.016	9.90
9	23.82 < nsp < inf	0.171	0.016	10.75

min_prob	Sensitivity	Error_Rate	num_correct	num_incorrect
Predicted Sensitivity and Error Rate
1.00	0.413	0.000	1438	0
0.99	0.650	0.000	2263	0
0.98	0.838	0.003	2920	8
0.97	0.855	0.003	2979	9
0.96	0.863	0.003	3006	10
0.95	0.873	0.004	3040	12
0.90	0.900	0.006	3134	19
0.80	0.933	0.012	3249	39
0.70	0.953	0.019	3320	63
0.60	0.973	0.029	3390	100
0.50	0.991	0.042	3453	152
0.40	1.000	0.050	3483	185
0.30	1.000	0.050	3483	185
0.20	1.000	0.050	3483	185
0.10	1.000	0.050	3483	185
0.00	1.000	0.050	3483	185

Error_Rate	min_prob	num_correct	num_incorrect
Error Table
0.0000	1.0000	1438	0
0.0017	0.9896	2688	5
0.0022	0.9875	2808	6
0.0025	0.9834	2888	7
0.0030	0.9724	2969	9
0.0040	0.9489	3048	12
0.0051	0.9219	3098	16
0.0061	0.9006	3134	19
0.0070	0.8802	3160	22
0.0080	0.8606	3182	26
0.0090	0.8448	3202	29
0.0101	0.8333	3220	33
0.0151	0.7498	3287	50
0.0201	0.6897	3332	68
0.0250	0.6388	3368	86
0.0301	0.5887	3398	105
0.0400	0.5177	3444	144
0.0500	0.4622	3483	183

protein_summary_header
initial_min_peptide_prob	0.05
min_peptide_probability	0.20
min_peptide_weight	0.50
num_input_1_spectra	0
num_input_2_spectra	17245
num_input_3_spectra	9831
num_input_4_spectra	1852
num_input_5_spectra	159
num_predicted_correct_prots	3483.4
reference_database	Cg-Giga_cont_AA.fa
residue_substitution_list	I -> L
sample_enzyme	trypsin
source_files	/home/sean/Documents/proteome/interact-20161205_Sample_27.pep.xml
source_files_alt	/home/sean/Documents/proteome/interact-20161205_Sample_27.pep.xml
total_no_spectrum_ids	28799.5
program_details
analysis	proteinprophet
time	2017-02-20T13:29:56
version	Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64))
proteinprophet_details
degen_flag	Y
final_peptide_wt_iters	4
fpkm_flag	N
groups_flag	Y
initial_peptide_wt_iters	2
nsp_distribution_iters	9
nsp_flag	Y
occam_flag	Y
tpp_models
time	Mon Feb 20 13:30:03 2017

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