| Learned Number of Sibling Peptide Distributions | ||||
| Neighboring bin smoothing: Y | ||||
| bin_number | nsp_range | pos_freq | neg_freq | pos/neg_ratio |
|---|---|---|---|---|
| 0 | 0.00 < nsp <= 0.21 | 0.046 | 0.500 | 0.09 |
| 1 | 0.21 < nsp <= 0.73 | 0.036 | 0.180 | 0.20 |
| 2 | 0.73 < nsp <= 1.28 | 0.059 | 0.078 | 0.75 |
| 3 | 1.28 < nsp <= 2.12 | 0.076 | 0.062 | 1.24 |
| 4 | 2.12 < nsp <= 3.10 | 0.082 | 0.044 | 1.87 |
| 5 | 3.10 < nsp <= 4.90 | 0.098 | 0.036 | 2.70 |
| 6 | 4.90 < nsp <= 7.53 | 0.127 | 0.032 | 3.92 |
| 7 | 7.53 < nsp <= 12.92 | 0.144 | 0.026 | 5.48 |
| 8 | 12.92 < nsp <= 24.44 | 0.159 | 0.021 | 7.48 |
| 9 | 24.44 < nsp < inf | 0.173 | 0.020 | 8.51 |
| Predicted Sensitivity and Error Rate | ||||
| min_prob | Sensitivity | Error_Rate | num_correct | num_incorrect |
|---|---|---|---|---|
| 1.00 | 0.420 | 0.000 | 1481 | 0 |
| 0.99 | 0.659 | 0.000 | 2324 | 0 |
| 0.98 | 0.839 | 0.003 | 2957 | 8 |
| 0.97 | 0.863 | 0.003 | 3041 | 10 |
| 0.96 | 0.875 | 0.004 | 3086 | 11 |
| 0.95 | 0.885 | 0.004 | 3121 | 13 |
| 0.90 | 0.912 | 0.006 | 3214 | 20 |
| 0.80 | 0.940 | 0.011 | 3315 | 37 |
| 0.70 | 0.960 | 0.018 | 3383 | 61 |
| 0.60 | 0.974 | 0.025 | 3431 | 87 |
| 0.50 | 0.992 | 0.039 | 3498 | 142 |
| 0.40 | 1.000 | 0.046 | 3525 | 171 |
| 0.30 | 1.000 | 0.046 | 3525 | 171 |
| 0.20 | 1.000 | 0.046 | 3525 | 171 |
| 0.10 | 1.000 | 0.046 | 3525 | 171 |
| 0.00 | 1.000 | 0.046 | 3525 | 171 |
| Error Table | |||
| Error_Rate | min_prob | num_correct | num_incorrect |
|---|---|---|---|
| 0.0000 | 1.0000 | 1481 | 0 |
| 0.0018 | 0.9893 | 2763 | 5 |
| 0.0020 | 0.9882 | 2832 | 6 |
| 0.0025 | 0.9829 | 2942 | 7 |
| 0.0030 | 0.9735 | 3018 | 9 |
| 0.0040 | 0.9533 | 3112 | 13 |
| 0.0050 | 0.9299 | 3167 | 16 |
| 0.0060 | 0.9076 | 3206 | 19 |
| 0.0070 | 0.8880 | 3235 | 23 |
| 0.0080 | 0.8624 | 3260 | 26 |
| 0.0090 | 0.8413 | 3280 | 30 |
| 0.0100 | 0.8241 | 3297 | 33 |
| 0.0150 | 0.7293 | 3360 | 51 |
| 0.0200 | 0.6593 | 3402 | 70 |
| 0.0250 | 0.5971 | 3434 | 88 |
| 0.0301 | 0.5529 | 3460 | 107 |
| 0.0400 | 0.4912 | 3502 | 146 |
| protein_summary_header | |
|---|---|
| initial_min_peptide_prob | 0.05 |
| min_peptide_probability | 0.20 |
| min_peptide_weight | 0.50 |
| num_input_1_spectra | 0 |
| num_input_2_spectra | 17792 |
| num_input_3_spectra | 9779 |
| num_input_4_spectra | 1698 |
| num_input_5_spectra | 149 |
| num_predicted_correct_prots | 3524.5 |
| reference_database | Cg-Giga_cont_AA.fa |
| residue_substitution_list | I -> L |
| sample_enzyme | trypsin |
| source_files | /home/sean/Documents/proteome/interact-20161205_Sample_27A.pep.xml |
| source_files_alt | /home/sean/Documents/proteome/interact-20161205_Sample_27A.pep.xml |
| total_no_spectrum_ids | 29154.6 |
| program_details | |
| analysis | proteinprophet |
| time | 2017-02-20T13:26:55 |
| version | Insilicos_LabKey_C++ (TPP v5.0.0 Typhoon, Build 201612091438-exported (Linux-x86_64)) |
| proteinprophet_details | |
| degen_flag | Y |
| final_peptide_wt_iters | 3 |
| fpkm_flag | N |
| groups_flag | Y |
| initial_peptide_wt_iters | 2 |
| nsp_distribution_iters | 9 |
| nsp_flag | Y |
| occam_flag | Y |
| tpp_models | |
| time | Mon Feb 20 13:27:02 2017 |